BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0493 (nuoB) DE:NADH dehydrogenase I, subunit B
(195 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75114 NADH dehydrogenase I chain B PAB0493 - Pyrococcus ab... 427 e-119
pir||D71019 probable NADH-ubiquinone oxidoreductase subunit - Py... 400 e-111
pir||D72281 hypothetical protein TM1214 - Thermotoga maritima (s... 230 1e-59
sp|Q9XBL7|NUKC_ANAVA NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 141 6e-33
emb|CAB45640.1| (AJ012180) NDH-K protein [Anabaena PCC7120] 140 1e-32
sp|Q44240|NUKC_ANASP NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 138 5e-32
gi|11467814 subunit K of NADH-ubiquinone oxidoreductase [Nephros... 137 9e-32
gi|11466396 subunit K of NADH-ubiquinone oxidoreductase [Mesosti... 136 2e-31
sp|P19050|NUKC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 136 3e-31
gi|11466706 psbG [Marchantia polymorpha] >gi|131322|sp|P06410|NU... 134 8e-31
gi|11465961 NADH dehydrogenase 27kD subunit [Nicotiana tabacum] ... 134 1e-30
sp|P06409|NUKC_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 134 1e-30
emb|CAA06191.1| (AJ004882) NADH-plastoquinone oxidoreductase sub... 134 1e-30
gi|7525037 photosystem II G protein [Arabidopsis thaliana] >gi|6... 134 1e-30
gi|11497532 NADH dehydrogenase 32kDa subunit [Spinacia oleracea]... 133 1e-30
sp|P52766|NUKC_LUPLU NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 133 1e-30
gi|11466791 psbG; PSII G protein [Oryza sativa] >gi|131323|sp|P1... 133 2e-30
sp|P26304|NUKC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 133 2e-30
pir||F2ZMG NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nd... 133 2e-30
gi|11467196 ndhK [Zea mays] >gi|1171864|sp|P06670|NUKC_MAIZE NAD... 133 2e-30
gb|AAF65732.1|AF228525_2 (AF228525) F420H2 dehydrogenase subunit... 132 2e-30
emb|CAC08301.1| (AL392148) NADH dehydrogenase subunit [Streptomy... 132 3e-30
sp|P31175|NUKC_SOYBN NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT K >g... 129 2e-29
sp|P17062|NUJC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 126 2e-28
sp|P42026|NUKM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 124 7e-28
gb|AAC27669.1| (AC005329) NUKM_HUMAN, partial CDS; COMPLE; CI-20... 123 1e-27
sp|O75251|NUKM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 123 1e-27
gi|11466592 NADH dehydrogenase subunit 10 [Rhodomonas salina] >g... 123 2e-27
gb|AAF03193.1|AF110138_25 (AF110138) NADH dehydrogenase subunit ... 122 3e-27
gb|AAF48552.1| (AE003500) CG9172 gene product [Drosophila melano... 122 3e-27
sp|O47950|NUKM_NEUCR PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 19.... 121 6e-27
gi|11466535 NADH dehydrogenase, subunit 10 [Reclinomonas america... 120 1e-26
sp|P42027|NUKM_BRAOL NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 120 1e-26
gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, put... 119 2e-26
sp|Q42577|NUKM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 119 3e-26
sp|Q9ZDH2|NUOB_RICPR NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 119 3e-26
sp|P56897|NUB2_RHIME NADH DEHYDROGENASE I CHAIN B 2 (NADH-UBIQUI... 119 3e-26
gb|AAF56901.1| (AE003770) CG2014 gene product [Drosophila melano... 119 3e-26
pir||T44818 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain P... 118 4e-26
gb|AAF91434.1| (AF281035) NADH-ubiquinone oxidoreductase subunit... 118 4e-26
sp|Q43844|NUKM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 118 7e-26
gb|AAA03036.1| (M93015) NADH dehydrogenase [Paracoccus denitrifi... 117 9e-26
gb|AAF91429.1|AF279902_1 (AF279902) NADH-ubiquinone oxidoreducta... 117 9e-26
gb|AAG19138.1| (AE005011) NADH dehydrogenase/oxidoreductase; Ndh... 117 1e-25
sp|P29918|NQO6_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NAD... 116 1e-25
emb|CAA76119.1| (Y16191) echC [Methanosarcina barkeri] 116 2e-25
emb|CAC12098.1| (AL445066) probable NADH dehydrogenase, chain B ... 116 2e-25
gb|AAA79257.1| (M26930) photosystem II protein G [Paramecium aur... 116 3e-25
gi|11466261 NADH dehydrogenase subunit 10 [Tetrahymena pyriformi... 115 3e-25
sp|O68853|NUB1_RHIME NADH DEHYDROGENASE I CHAIN B 1 (NADH-UBIQUI... 115 4e-25
emb|CAB65525.1| (AJ250340) subunit NUKM of protein NADH:Ubiquino... 115 4e-25
sp|O84970|NUOB_RHOCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 115 6e-25
pir||D75115 co-induced hydrogenase related, chain l PAB1890 - Py... 115 6e-25
pir||D82821 NADH-ubiquinone oxidoreductase, NQO6 subunit XF0306 ... 114 1e-24
gb|AAK40969.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus ... 113 1e-24
pir||C72621 probable NADH dehydrogenase (ubiquinone) chain 10 AP... 113 1e-24
emb|CAB57637.1| (Y18930) hypothetical protein [Sulfolobus solfat... 113 1e-24
pir||E71017 probable NADH-ubiquinone oxidoreductase subunit - Py... 112 3e-24
pir||F81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 112 4e-24
pir||H81221 NADH dehydrogenase I, B chain NMB0242 [imported] - N... 111 5e-24
sp|Q94360|NUKM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 20 ... 111 8e-24
gb|AAC12755.1| (AF055637) NADH-ubiqionone oxidoreductase subunit... 110 1e-23
emb|CAB67131.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 109 3e-23
pir||T51316 probable CO-induced hydrogenase complex chain CooL [... 108 4e-23
pir||C83316 NADH dehydrogenase I chain B PA2638 [imported] - Pse... 108 4e-23
sp|P15602|NUKM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 108 6e-23
gi|8928600 NADH dehydrogenase subunit 10 [Paramecium aurelia] 108 6e-23
gb|AAF97798.1|AF281148_2 (AF281148) NADH dehydrogenase I subunit... 108 6e-23
pir||E64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 107 1e-22
pir||C71838 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 107 1e-22
pir||S37059 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B... 106 2e-22
sp|O67334|NUOB_AQUAE NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 105 5e-22
sp|P57253|NUOB_BUCAI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 105 5e-22
sp|P33598|NUOB_ECOLI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 104 1e-21
pir||H81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 104 1e-21
pir||T34623 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain n... 103 2e-21
pir||C75388 NADH dehydrogenase I, B subunit - Deinococcus radiod... 103 2e-21
sp|Q56218|NQO6_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NAD... 102 2e-21
sp|O85274|NUOB_ERWCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 101 7e-21
sp|P95180|NUOB_MYCTU NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 100 2e-20
sp|Q26783|NUKM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 98 1e-19
pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jan... 95 5e-19
gb|AAB98505.1| (U67501) carbon monoxide dehydrogenase, hydrogena... 95 5e-19
sp|P16433|HYCG_ECOLI FORMATE HYDROGENLYASE SUBUNIT 7 (FHL SUBUNI... 92 6e-18
emb|CAA35552.1| (X17506) hycG [Escherichia coli] >gi|1093500|prf... 91 8e-18
pir||C75060 hydrogenase (EC 1.-.-.-) 4 component I PAB1396 [impo... 91 8e-18
emb|CAB52769.1| (AJ243655) hydrogenase small subunit [Methanobac... 87 2e-16
pir||E69151 formate hydrogenlyase, subunit 7 - Methanobacterium ... 87 2e-16
sp|P77668|HYFI_ECOLI HYDROGENASE-4 COMPONENT I >gi|7443160|pir||... 83 2e-15
dbj|BAA16377.1| (D90877) probable hydrogenase 3 protein 7 [Esche... 83 2e-15
dbj|BAA16121.1| (D90860) NADH DEHYDROGENASE I CHAIN B (EC 1.6.5.... 82 5e-15
pir||C70850 probable oxidoreductase subunit - Mycobacterium tube... 81 9e-15
gb|AAB88386.1| (AF034788) formate hydrogenlyase subunit 7 [Metha... 78 6e-14
pir||B64470 formate hydrogenlyase, subunit 7 - Methanococcus jan... 78 1e-13
pir||E69032 formate hydrogenlyase, subunit 7 - Methanobacterium ... 75 5e-13
emb|CAB52790.1| (AJ243656) hydrogenase small subunit [Methanobac... 74 1e-12
>pir||A75114 NADH dehydrogenase I chain B PAB0493 - Pyrococcus abyssi (strain
Orsay) >gi|5458137|emb|CAB49626.1| (AJ248285) NADH
dehydrogenase I, subunit B [Pyrococcus abyssi]
Length = 195
Score = 427 bits (1087), Expect = e-119
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MREMVDWRLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQY 60
MREMVDWRLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQY
Sbjct: 1 MREMVDWRLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQY 60
Query: 61 DLFLITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVD 120
DLFLITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVD
Sbjct: 61 DLFLITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVD 120
Query: 121 VFIAGCMPRPEAVLDGIYKLMEMIENGEADGWKRYKENYEWYRKNQDELLGEGWREKEAK 180
VFIAGCMPRPEAVLDGIYKLMEMIENGEADGWKRYKENYEWYRKNQDELLGEGWREKEAK
Sbjct: 121 VFIAGCMPRPEAVLDGIYKLMEMIENGEADGWKRYKENYEWYRKNQDELLGEGWREKEAK 180
Query: 181 KWIPWLVDKKKEVKQ 195
KWIPWLVDKKKEVKQ
Sbjct: 181 KWIPWLVDKKKEVKQ 195
>pir||D71019 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257873|dbj|BAA30556.1| (AP000006) 195aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 195
Score = 400 bits (1016), Expect = e-111
Identities = 175/192 (91%), Positives = 189/192 (98%)
Query: 4 MVDWRLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLF 63
MVDWRLFEPLFNWARKKSLWIV+FCTGCGGIEMPPLMT+RYDIERFGM+ DPSPRQYDLF
Sbjct: 4 MVDWRLFEPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGMLSDPSPRQYDLF 63
Query: 64 LITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFI 123
LITGYVTPKTLKRIIITYELSPDPKYVLAHGSCP+NGG+YWDSYN +KHLDKYIPVDVFI
Sbjct: 64 LITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPINGGVYWDSYNTVKHLDKYIPVDVFI 123
Query: 124 AGCMPRPEAVLDGIYKLMEMIENGEADGWKRYKENYEWYRKNQDELLGEGWREKEAKKWI 183
AGCMPRPEAV+DGIYKLM+MIE+GEADGW+RYKENYEWY+KNQDELLGEGWREKEA+KWI
Sbjct: 124 AGCMPRPEAVMDGIYKLMDMIESGEADGWRRYKENYEWYKKNQDELLGEGWREKEARKWI 183
Query: 184 PWLVDKKKEVKQ 195
PWLVDK +EVK+
Sbjct: 184 PWLVDKTREVKK 195
>pir||D72281 hypothetical protein TM1214 - Thermotoga maritima (strain MSB8)
>gi|4981767|gb|AAD36289.1|AE001778_10 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 178
Score = 230 bits (580), Expect = 1e-59
Identities = 100/169 (59%), Positives = 130/169 (76%)
Query: 4 MVDWRLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLF 63
M + ++E + + R +S+W++ +CTGCG +E+PP MTSR+D+ERFG+ P +PRQ D+
Sbjct: 1 MKERSIWERIADNLRSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADIL 60
Query: 64 LITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFI 123
LITGY+ KTL+R+I TYE PDPKYV+ GSC +NGGIY+DSY + LD YIPVDV+I
Sbjct: 61 LITGYLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYI 120
Query: 124 AGCMPRPEAVLDGIYKLMEMIENGEADGWKRYKENYEWYRKNQDELLGE 172
AGCMPRPEA+L+ LME I GEADGWKRY+ENYEWY++NQ LGE
Sbjct: 121 AGCMPRPEAILEAFNYLMEKIRKGEADGWKRYRENYEWYKQNQIRSLGE 169
>sp|Q9XBL7|NUKC_ANAVA NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K (NDH-K)
>gi|5139342|emb|CAB45647.1| (AJ012181) NDH-K protein
[Anabaena variabilis]
Length = 245
Score = 141 bits (352), Expect = 6e-33
Identities = 67/153 (43%), Positives = 97/153 (62%), Gaps = 1/153 (0%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L+NWAR SLW + F T C IE L+ SR+D +RFG+IP SPRQ DL + G +T
Sbjct: 38 DDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTIT 97
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPR 129
K +++ YE P+PKYV+A G+C + GG++ DS A++ +DK IPVDV++ GC PR
Sbjct: 98 MKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPR 157
Query: 130 PEAVLDGIYKLMEMIENGEADGWKRYKENYEWY 162
PEA++D I KL + I N ++ + +Y
Sbjct: 158 PEAIIDAIIKLRKKIANDSMQERSLIRQTHRFY 190
>emb|CAB45640.1| (AJ012180) NDH-K protein [Anabaena PCC7120]
Length = 245
Score = 140 bits (349), Expect = 1e-32
Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L+NWAR SLW + F T C IE L+ SR+D +RFG+IP SPRQ DL + G +T
Sbjct: 38 DDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTIT 97
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPR 129
K +++ YE P+PKYV+A G+C + GG++ DS A++ +DK IPVDV++ GC PR
Sbjct: 98 MKMAPQLVRLYEQMPEPKYVIAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPR 157
Query: 130 PEAVLDGIYKLMEMIENGEADGWKRYKENYEWY 162
PEA++D + KL + I N ++ + +Y
Sbjct: 158 PEAIIDAMIKLRKKIANDSMQERSLIRQTHRFY 190
>sp|Q44240|NUKC_ANASP NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|7443152|pir||S74216
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK
- Anabaena sp. (PCC 7120) >gi|1173548|gb|AAC44353.1|
(U31208) NADH dehydrogenase type 1 subunit [Anabaena
sp.]
Length = 245
Score = 138 bits (344), Expect = 5e-32
Identities = 65/153 (42%), Positives = 97/153 (62%), Gaps = 1/153 (0%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L+NWAR SLW + F T C IE L+ SR+D +RFG+IP SPRQ DL + G +T
Sbjct: 38 DDLYNWARLSSLWPLLFGTACCFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTIT 97
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPR 129
K +++ YE P+PKYV+A G+C + GG++ +S A++ +DK IPVDV++ GC PR
Sbjct: 98 MKMAPQMVRLYEKMPEPKYVIAMGACTITGGMFSVESPTAVRGVDKLIPVDVYLPGCPPR 157
Query: 130 PEAVLDGIYKLMEMIENGEADGWKRYKENYEWY 162
PEA++D + KL + I N ++ + +Y
Sbjct: 158 PEAIIDAMIKLRKKIANDSMQERSLIRQTHRFY 190
>gi|11467814 subunit K of NADH-ubiquinone oxidoreductase [Nephroselmis olivacea]
>gi|5880743|gb|AAD54836.1|AF137379_59 (AF137379) subunit
K of NADH-ubiquinone oxidoreductase [Nephroselmis
olivacea]
Length = 237
Score = 137 bits (342), Expect = 9e-32
Identities = 62/133 (46%), Positives = 90/133 (67%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L+NWAR SLW + + T C IE L+ SR+D +RFG++P SPRQ DL + G VT K
Sbjct: 37 LYNWARLSSLWPLLYGTSCCFIEFACLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMK 96
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE PDPKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 97 MAPSLVRLYEQMPDPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 156
Query: 132 AVLDGIYKLMEMI 144
A++D + KL + +
Sbjct: 157 AIIDAVIKLRKKV 169
>gi|11466396 subunit K of NADH-ubiquinone oxidoreductase [Mesostigma viride]
>gi|7259539|gb|AAF43840.1|AF166114_52 (AF166114) subunit
K of NADH-ubiquinone oxidoreductase [Mesostigma viride]
Length = 247
Score = 136 bits (339), Expect = 2e-31
Identities = 65/150 (43%), Positives = 96/150 (63%), Gaps = 7/150 (4%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L+NWAR SLW + + T C IE L+ SR+D +RFG++P SPRQ DL + G VT K
Sbjct: 46 LYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFGLVPRCSPRQADLIITAGTVTMK 105
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 106 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 165
Query: 132 AVLDGIYKLME------MIENGEADGWKRY 155
A++D + KL + ++E G+ RY
Sbjct: 166 AIIDAVIKLRKKVAQENLVERGKLAQTHRY 195
>sp|P19050|NUKC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K HOMOLOG
>gi|79727|pir||S04437 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain ndhK - Synechocystis sp. (strain PCC
6803) >gi|48047|emb|CAA35485.1| (X17439) PSII-G protein
(AA 1 - 248) [Synechocystis PCC6803]
>gi|1653370|dbj|BAA18284.1| (D90913) NADH-ubiquinone
oxidoreductase subunit PsbG [Synechocystis sp.]
Length = 248
Score = 136 bits (338), Expect = 3e-31
Identities = 63/137 (45%), Positives = 90/137 (64%), Gaps = 1/137 (0%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L+NWA+ SLW + + T C IE L+ SR+D +RFG++P SPRQ DL + G +T
Sbjct: 42 DDLYNWAKLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTIT 101
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPR 129
K ++ YE P+PKYV+A G+C + GG++ DS A++ +DK IPVDV+I GC PR
Sbjct: 102 MKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPR 161
Query: 130 PEAVLDGIYKLMEMIEN 146
PEA+ D I KL + + N
Sbjct: 162 PEAIFDAIIKLRKKVAN 178
>gi|11466706 psbG [Marchantia polymorpha] >gi|131322|sp|P06410|NUKC_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
>gi|72690|pir||F2LVG psbG protein - liverwort
(Marchantia polymorpha) chloroplast
>gi|11676|emb|CAA28088.1| (X04465) psbG [Marchantia
polymorpha]
Length = 243
Score = 134 bits (334), Expect = 8e-31
Identities = 64/157 (40%), Positives = 95/157 (59%), Gaps = 1/157 (0%)
Query: 10 FEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYV 69
F NWAR SLW + + T C IE L+ SR+D +R+G++P SPRQ DL + G V
Sbjct: 44 FNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTV 103
Query: 70 TPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMP 128
T K ++ YE P+PKYV+A G+C + GG++ DSY ++ +DK IPVD+++ GC P
Sbjct: 104 TMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPVDIYLPGCPP 163
Query: 129 RPEAVLDGIYKLMEMIENGEADGWKRYKENYEWYRKN 165
+PEA++D I KL + I + K K+ ++ N
Sbjct: 164 KPEAIIDAIIKLRKKIAQEIYEEKKILKKGTRFFTLN 200
>gi|11465961 NADH dehydrogenase 27kD subunit [Nicotiana tabacum]
>gi|11837|emb|CAA77357.1| (Z00044) NADH dehydrogenase
27kD subunit [Nicotiana tabacum]
>gi|225205|prf||1211235AK bhpB gene [Nicotiana tabacum]
Length = 284
Score = 134 bits (333), Expect = 1e-30
Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 84 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 143
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 144 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 203
Query: 132 AVLDGIYKLMEMI 144
AV+D I KL + I
Sbjct: 204 AVIDAITKLRKKI 216
>sp|P06409|NUKC_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|72687|pir||F2NTG
psbG protein - common tobacco chloroplast
Length = 247
Score = 134 bits (333), Expect = 1e-30
Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 47 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 106
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 107 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 166
Query: 132 AVLDGIYKLMEMI 144
AV+D I KL + I
Sbjct: 167 AVIDAITKLRKKI 179
>emb|CAA06191.1| (AJ004882) NADH-plastoquinone oxidoreductase subunit, NdhK [Pisum
sativum]
Length = 227
Score = 134 bits (333), Expect = 1e-30
Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 25 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 84
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 85 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 144
Query: 132 AVLDGIYKLMEMI 144
AV+D I KL + I
Sbjct: 145 AVIDAITKLRKKI 157
>gi|7525037 photosystem II G protein [Arabidopsis thaliana]
>gi|6685682|sp|P56756|NUKC_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT K >gi|5881698|dbj|BAA84389.1|
(AP000423) photosystem II G protein [Arabidopsis
thaliana]
Length = 225
Score = 134 bits (333), Expect = 1e-30
Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 25 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 84
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 85 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 144
Query: 132 AVLDGIYKLMEMI 144
AV+D I KL + I
Sbjct: 145 AVIDAITKLRKKI 157
>gi|11497532 NADH dehydrogenase 32kDa subunit [Spinacia oleracea]
>gi|7636113|emb|CAB88733.1| (AJ400848) NADH
dehydrogenase 32kDa subunit [Spinacia oleracea]
Length = 281
Score = 133 bits (332), Expect = 1e-30
Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 79 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRASPRQADLILTAGTVTMK 138
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 139 MAPSLLRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 198
Query: 132 AVLDGIYKLMEMI 144
AV+D I KL + I
Sbjct: 199 AVIDAITKLRKKI 211
>sp|P52766|NUKC_LUPLU NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|7443163|pir||T09637
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK
- yellow lupine chloroplast >gi|881443|gb|AAB86906.1|
(U27654) NADH-ubiquinone oxidoreductase subunit [Lupinus
luteus]
Length = 226
Score = 133 bits (332), Expect = 1e-30
Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 25 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 84
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 85 MAPSLVRLYEQMPEPKYVIAIGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 144
Query: 132 AVLDGIYKLMEMI 144
AV+D I KL + I
Sbjct: 145 AVIDAITKLRKKI 157
>gi|11466791 psbG; PSII G protein [Oryza sativa] >gi|131323|sp|P12159|NUKC_ORYSA
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
>gi|72688|pir||F2RZG psbG protein - rice chloroplast
>gi|11988|emb|CAA34000.1| (X15901) psbG; PSII G protein
[Oryza sativa] >gi|226609|prf||1603356AF photosystem II
G protein [Oryza sativa]
Length = 246
Score = 133 bits (331), Expect = 2e-30
Identities = 62/133 (46%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 46 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 105
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 106 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 165
Query: 132 AVLDGIYKLMEMI 144
AV+D + KL + I
Sbjct: 166 AVIDALTKLRKKI 178
>sp|P26304|NUKC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|100799|pir||S09666
psbG protein - wheat chloroplast
>gi|556460|gb|AAA84731.1| (J04954) thylakoid membrane
protein [Triticum aestivum]
Length = 245
Score = 133 bits (331), Expect = 2e-30
Identities = 62/133 (46%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 45 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 104
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 105 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 164
Query: 132 AVLDGIYKLMEMI 144
AV+D + KL + I
Sbjct: 165 AVIDALTKLRKKI 177
>pir||F2ZMG NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK - maize
chloroplast >gi|12427|emb|CAA35482.1| (X17438) PSII-G
protein (AA 1 - 248) [Zea mays]
>gi|552735|gb|AAA84484.1| (M12704) PSII-G [Zea mays]
Length = 248
Score = 133 bits (331), Expect = 2e-30
Identities = 62/133 (46%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 46 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 105
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 106 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 165
Query: 132 AVLDGIYKLMEMI 144
AV+D + KL + I
Sbjct: 166 AVIDALTKLRKKI 178
>gi|11467196 ndhK [Zea mays] >gi|1171864|sp|P06670|NUKC_MAIZE NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT K >gi|902226|emb|CAA60290.1|
(X86563) ndhK [Zea mays]
Length = 248
Score = 133 bits (331), Expect = 2e-30
Identities = 62/133 (46%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 46 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 105
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC P+PE
Sbjct: 106 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 165
Query: 132 AVLDGIYKLMEMI 144
AV+D + KL + I
Sbjct: 166 AVIDALTKLRKKI 178
>gb|AAF65732.1|AF228525_2 (AF228525) F420H2 dehydrogenase subunit FpoB [Methanosarcina mazei]
Length = 184
Score = 132 bits (330), Expect = 2e-30
Identities = 57/135 (42%), Positives = 90/135 (66%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ + NW RK SLW ++ GC G+EM + YD +RFG+IP SPR D+ +I+GYVT
Sbjct: 41 QDIINWGRKNSLWFMTQPMGCCGVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISGYVT 100
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K L + ++ P PK+V+A G C ++GG +++SY+ ++++D+ P+DV+I GC PRP
Sbjct: 101 KKYLPALKRLWDQMPAPKWVIAMGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCPPRP 160
Query: 131 EAVLDGIYKLMEMIE 145
EA++ G +L E I+
Sbjct: 161 EALIQGFVELQEKIK 175
>emb|CAC08301.1| (AL392148) NADH dehydrogenase subunit [Streptomyces coelicolor]
Length = 232
Score = 132 bits (329), Expect = 3e-30
Identities = 63/133 (47%), Positives = 84/133 (62%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIP-DPSPRQYDLFLITGYVTP 71
+ NW R+ SLW+ +F C IE +R+D R G+IP P PRQ DL +++G VT
Sbjct: 34 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 93
Query: 72 KTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
K + YE P+PKYV++ G+C GG YWDSY+ K +D+ IPVDV++ GC PRPE
Sbjct: 94 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 153
Query: 132 AVLDGIYKLMEMI 144
A+L GI KL E I
Sbjct: 154 ALLQGILKLQEKI 166
>sp|P31175|NUKC_SOYBN NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT K >gi|282904|pir||S27978
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK
- soybean chloroplast (fragment)
>gi|11304|emb|CAA45612.1| (X64329) ndhK [Glycine max]
Length = 224
Score = 129 bits (322), Expect = 2e-29
Identities = 61/133 (45%), Positives = 88/133 (65%), Gaps = 1/133 (0%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 22 LSNWSRLPSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTVGTVTMK 81
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ ++ +DK IPVDV++ GC +PE
Sbjct: 82 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPTKPE 141
Query: 132 AVLDGIYKLMEMI 144
A++D I KL + I
Sbjct: 142 AIIDAITKLRKEI 154
>sp|P17062|NUJC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K HOMOLOG 2
>gi|72691|pir||F2YBG2 hypothetical ndhK homolog -
Synechocystis sp. (strain PCC 6803)
>gi|48068|emb|CAA35236.1| (X17359) put. psbG2 product
(AA 1-219) [Synechocystis PCC6803]
Length = 219
Score = 126 bits (314), Expect = 2e-28
Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 4/164 (2%)
Query: 1 MREMVDWRLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQY 60
+ E V + ++NWAR +L+ + F T C +E R+D+ERFG IP +PRQ
Sbjct: 23 LSENVILTCLDDIYNWARLSTLYPMMFGTACCFMEFMAAFGPRFDLERFGSIPRATPRQA 82
Query: 61 DLFLITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPV 119
DL + G +T K ++ YE P+PKYV+A G+C + G++ DS A++ +DK IPV
Sbjct: 83 DLMITAGTITMKYAPALVQLYEQIPEPKYVIAMGACTITAGMFSADSPTAVRGVDKLIPV 142
Query: 120 DVFIAGCMPRPEAVLDGIYKLMEMIENGEADGWKRYKENYEWYR 163
DV+I GC PRPEAV+DGI KL + + + + Y E+ + +R
Sbjct: 143 DVYIPGCPPRPEAVIDGIIKLRKKV---AGESRQDYTEDLQTHR 183
>sp|P42026|NUKM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) (PSST SUBUNIT) >gi|108826|pir||S22371
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST
- bovine >gi|599691|emb|CAA46154.1| (X65020) PSST
subunit of the NADH: ubiquinone oxidoreductase complex
[Bos taurus]
Length = 216
Score = 124 bits (309), Expect = 7e-28
Identities = 59/154 (38%), Positives = 91/154 (58%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR+ SLW ++F C +EM + RYD++RFG++ SPRQ D+ ++ G +T
Sbjct: 71 DDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLT 130
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 131 NKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 190
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L GI +L + I KR K WYR+
Sbjct: 191 EALLYGILQLQKKI--------KREKRLRIWYRR 216
>gb|AAC27669.1| (AC005329) NUKM_HUMAN, partial CDS; COMPLE; CI-20KD; PSST SUBUNIT
[Homo sapiens]
Length = 158
Score = 123 bits (306), Expect = 1e-27
Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR+ SLW ++F C +EM + RYD++RFG++ SPRQ D+ ++ G +T
Sbjct: 13 DDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLT 72
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD++I GC P
Sbjct: 73 NKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTA 132
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L GI +L I KR + WYR+
Sbjct: 133 EALLYGILQLQRKI--------KRERRLQIWYRR 158
>sp|O75251|NUKM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) (PSST SUBUNIT)
Length = 213
Score = 123 bits (306), Expect = 1e-27
Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR+ SLW ++F C +EM + RYD++RFG++ SPRQ D+ ++ G +T
Sbjct: 68 DDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLT 127
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD++I GC P
Sbjct: 128 NKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTA 187
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L GI +L I KR + WYR+
Sbjct: 188 EALLYGILQLQRKI--------KRERRLQIWYRR 213
>gi|11466592 NADH dehydrogenase subunit 10 [Rhodomonas salina]
>gi|10444179|gb|AAG17753.1|AF288090_29 (AF288090) NADH
dehydrogenase subunit 10 [Rhodomonas salina]
Length = 158
Score = 123 bits (305), Expect = 2e-27
Identities = 62/154 (40%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR+ SLW ++F C +EM SRYD +RFG+I SPRQ D+ ++ G +T
Sbjct: 13 DDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASPRQSDIMIVAGTLT 72
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P++V++ GSC GG Y SY+ ++ DK +PVDVF+ GC P
Sbjct: 73 NKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHFSYSVVRGCDKIVPVDVFVPGCPPTA 132
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L GI +L + I KR K W+ K
Sbjct: 133 EALLYGILQLQKKI--------KRTKTVQTWFLK 158
>gb|AAF03193.1|AF110138_25 (AF110138) NADH dehydrogenase subunit 10 [Nephroselmis olivacea]
Length = 158
Score = 122 bits (303), Expect = 3e-27
Identities = 57/154 (37%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWARK S+W ++F C +EM SRYD++RFG+I PSPRQ D+ ++ G +T
Sbjct: 13 DSLLNWARKGSMWPMTFGLACCAVEMMHCGASRYDLDRFGIIFRPSPRQSDVMIVAGTLT 72
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P++V++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 73 NKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 132
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L G+ +L + I+ R + WY++
Sbjct: 133 EALLYGLLQLQKKIQ--------RTNNSVLWYQQ 158
>gb|AAF48552.1| (AE003500) CG9172 gene product [Drosophila melanogaster]
Length = 221
Score = 122 bits (303), Expect = 3e-27
Identities = 57/163 (34%), Positives = 94/163 (56%), Gaps = 10/163 (6%)
Query: 4 MVDWRL--FEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYD 61
+ +W L + L NW RK S+W ++F C +EM + RYD++R+G++ SPRQ D
Sbjct: 67 VAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQAD 126
Query: 62 LFLITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDV 121
+ ++ G +T K + Y+ P+P++V++ GSC GG Y SY+ ++ D+ IPVD+
Sbjct: 127 VIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDI 186
Query: 122 FIAGCMPRPEAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
++ GC P EA++ G+ +L + + KR K WYRK
Sbjct: 187 YVPGCPPTAEALMYGVLQLQKKV--------KRMKTLQMWYRK 221
>sp|O47950|NUKM_NEUCR PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 19.3 KDA SUBUNIT PRECURSOR
(COMPLEX I-19.3KD) (CI-19.3KD)
>gi|2764632|emb|CAA04802.1| (AJ001520) 19.3kD
iron-sulfur subunit of mitochondrial complex I
[Neurospora crassa]
Length = 226
Score = 121 bits (301), Expect = 6e-27
Identities = 58/154 (37%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ + NWAR+ SLW ++F C +EM L T RYD +R G+I SPRQ D+ ++ G +T
Sbjct: 81 DSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLT 140
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ PDP++V++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 141 NKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTS 200
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA++ GI++L + N K WYRK
Sbjct: 201 EALMYGIFQLQRKMRN--------TKITRMWYRK 226
>gi|11466535 NADH dehydrogenase, subunit 10 [Reclinomonas americana]
>gi|6647649|sp|O21272|NUKM_RECAM NADH-UBIQUINONE
OXIDOREDUCTASE 20 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 10) >gi|7443157|pir||S78166 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 10 - Reclinomonas
americana (ATCC 50394) mitochondrion
>gi|2258365|gb|AAD11899.1| (AF007261) NADH
dehydrogenase, subunit 10 [Reclinomonas americana]
Length = 182
Score = 120 bits (299), Expect = 1e-26
Identities = 58/154 (37%), Positives = 91/154 (58%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWARK SLW ++F C +EM SRYD++RFG+I PSPRQ D+ ++ G +T
Sbjct: 37 DELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGIIFRPSPRQSDVMIVAGTLT 96
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ +P++V++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 97 NKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 156
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L G+ +L + I KR ++ W +K
Sbjct: 157 EALLYGLLQLQKKI--------KRSRKTLYWLQK 182
>sp|P42027|NUKM_BRAOL NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|629601|pir||S48826 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST
precursor - wild cabbage >gi|562282|emb|CAA57725.1|
(X82274) PSST subunit of NADH: ubiquinone oxidoreductase
[Brassica oleracea]
Length = 215
Score = 120 bits (298), Expect = 1e-26
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR+ S+W ++F C +EM +RYD++RFG+I PSPRQ D ++ G +T
Sbjct: 70 DDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLT 129
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P++V++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 130 NKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 189
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L G+ +L + I R K+ W+ K
Sbjct: 190 EALLYGLLQLQKKI--------NRRKDFLHWWNK 215
>gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus] >gi|7483897|pir||D69478 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3), 39.7 kDa
subunit homolog - Archaeoglobus fulgidus
>gi|2648716|gb|AAB89421.1| (AE000976) F420H2:quinone
oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus]
Length = 353
Score = 119 bits (296), Expect = 2e-26
Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 12 PLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTP 71
P+ W K SLW V T C G E+ YD ER G + RQ +L ++ G +T
Sbjct: 18 PIKKWGTKWSLWPVHLVTACCGAELAHAFACGYDGERIGALNYGIARQTNLIIVEGAITR 77
Query: 72 KTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
K K + IT+E PDPK+V+ G+C L GGI+W+ Y+ +K D +PVD FI GC P PE
Sbjct: 78 KMAKVLRITWEQMPDPKFVIVMGACGLQGGIFWNGYHMVKPSD-VVPVDFFIPGCPPTPE 136
Query: 132 AVLDGIYKLMEMIENGEA 149
A+L GI +L IE GEA
Sbjct: 137 ALLRGIRQLQFKIETGEA 154
>sp|Q42577|NUKM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|1084345|pir||S52286 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST
precursor - Arabidopsis thaliana
>gi|643090|emb|CAA58887.1| (X84078) NADH dehydrogenase
[Arabidopsis thaliana] >gi|7573391|emb|CAB87695.1|
(AL163814) NADH dehydrogenase (ubiquinone) [Arabidopsis
thaliana]
Length = 218
Score = 119 bits (295), Expect = 3e-26
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR S+W ++F C +EM +RYD++RFG+I PSPRQ D ++ G +T
Sbjct: 73 DDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLT 132
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P++V++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 133 NKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 192
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L G+ +L + I R K+ W+ K
Sbjct: 193 EALLYGLLQLQKKI--------NRRKDFLHWWNK 218
>sp|Q9ZDH2|NUOB_RICPR NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|7443155|pir||F71692 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain B RP356 - Rickettsia
prowazekii >gi|3860916|emb|CAA14816.1| (AJ235271) NADH
DEHYDROGENASE I CHAIN B (nuoB) [Rickettsia prowazekii]
Length = 174
Score = 119 bits (295), Expect = 3e-26
Identities = 54/135 (40%), Positives = 84/135 (62%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ + +WAR SLW ++F C +EM SRYD++RFGM+ PSPRQ DL ++ G +T
Sbjct: 27 DEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLT 86
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ +PK+VL+ GSC GG Y SY+ ++ D+ +PVDV++ GC P
Sbjct: 87 NKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTA 146
Query: 131 EAVLDGIYKLMEMIE 145
EA++ G+ +L + I+
Sbjct: 147 EALIYGLMQLQKKIK 161
>sp|P56897|NUB2_RHIME NADH DEHYDROGENASE I CHAIN B 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN B 2) >gi|5650745|emb|CAB51630.1| (AJ245399)
putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 167
Score = 119 bits (295), Expect = 3e-26
Identities = 55/149 (36%), Positives = 93/149 (61%), Gaps = 1/149 (0%)
Query: 1 MREMVDWRLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQY 60
+R+ V + + + +W+R+ +LW +F C IEM +RYD++RFG++ PSPRQ
Sbjct: 8 IRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSPRQS 67
Query: 61 DLFLITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVD 120
D+ +I G VT K + Y+ P+P++V+A G+C ++GG+Y ++Y ++ + ++PVD
Sbjct: 68 DVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVY-NTYAVVQGSETFVPVD 126
Query: 121 VFIAGCMPRPEAVLDGIYKLMEMIENGEA 149
V + GC PRPEA++ G L E I+ A
Sbjct: 127 VHVPGCPPRPEALMHGFLLLQEKIKKSRA 155
>gb|AAF56901.1| (AE003770) CG2014 gene product [Drosophila melanogaster]
Length = 212
Score = 119 bits (295), Expect = 3e-26
Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NW RK SLW ++F C +EM + RYD++R+G++ SPRQ D+ ++ G +T
Sbjct: 67 DDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAGTLT 126
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K Y+ P+P++V++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 127 NKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 186
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA++ GI +L + + KR + WYRK
Sbjct: 187 EALMYGILQLQKKV--------KRMRTLQMWYRK 212
>pir||T44818 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST precursor
[imported] - yellow lupine >gi|6007781|gb|AAF01037.1|
(AF185271) NADH ubiquinone oxidoreductase PSST subunit
[Lupinus luteus]
Length = 213
Score = 118 bits (294), Expect = 4e-26
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR+ S+W ++F C +EM +RYD++RFG+I PSPRQ D ++ G +T
Sbjct: 68 DDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLT 127
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P++V++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 128 NKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 187
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L G+ +L + I R K+ W+ K
Sbjct: 188 EALLYGLLQLQKKI--------NRRKDFLLWWTK 213
>gb|AAF91434.1| (AF281035) NADH-ubiquinone oxidoreductase subunit PSST [Lupinus
luteus]
Length = 192
Score = 118 bits (294), Expect = 4e-26
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR+ S+W ++F C +EM +RYD++RFG+I PSPRQ D ++ G +T
Sbjct: 47 DDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLT 106
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P++V++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 107 NKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 166
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L G+ +L + I R K+ W+ K
Sbjct: 167 EALLYGLLQLQKKI--------NRRKDFLLWWTK 192
>sp|Q43844|NUKM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|7443153|pir||T07603 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) 22K chain -
potato >gi|1235607|emb|CAA65451.1| (X96671)
NADH-ubiquinone oxidoreductase [Solanum tuberosum]
Length = 213
Score = 118 bits (292), Expect = 7e-26
Identities = 53/134 (39%), Positives = 83/134 (61%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR+ S+W ++F C +EM +RYD +RFG+I PSPRQ D+ ++ G +T
Sbjct: 68 DDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLT 127
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P++V++ GSC GG Y SY ++ D+ +PVD+++ GC P
Sbjct: 128 NKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTA 187
Query: 131 EAVLDGIYKLMEMI 144
EA+L GI +L + I
Sbjct: 188 EALLYGILQLQKKI 201
>gb|AAA03036.1| (M93015) NADH dehydrogenase [Paracoccus denitrificans]
Length = 174
Score = 117 bits (291), Expect = 9e-26
Identities = 55/134 (41%), Positives = 79/134 (58%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
E + NWAR SL ++F C +EM RYD+ERFG P SPRQ DL ++ G +T
Sbjct: 33 EDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLT 92
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 93 NKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 152
Query: 131 EAVLDGIYKLMEMI 144
EA+L GI +L I
Sbjct: 153 EALLYGILQLQRRI 166
>gb|AAF91429.1|AF279902_1 (AF279902) NADH-ubiquinone oxidoreductase subunit PSST [Lupinus
luteus]
Length = 210
Score = 117 bits (291), Expect = 9e-26
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR+ S+W ++F C +EM +RYD++RFG+I PSPRQ D ++ G +T
Sbjct: 65 DDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLT 124
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P++V++ GSC GG Y SY ++ D+ +PVD+++ GC P
Sbjct: 125 NKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYYVVRGCDRIVPVDIYVPGCPPTA 184
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L G+ +L + I R K+ W+ K
Sbjct: 185 EALLYGLLQLQKKI--------NRRKDFLLWWTK 210
>gb|AAG19138.1| (AE005011) NADH dehydrogenase/oxidoreductase; NdhG1 [Halobacterium
sp. NRC-1]
Length = 235
Score = 117 bits (290), Expect = 1e-25
Identities = 54/141 (38%), Positives = 86/141 (60%), Gaps = 1/141 (0%)
Query: 10 FEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGM-IPDPSPRQYDLFLITGY 68
F+ NW R S++++ F C IEM + ++D++RF +P SPRQ D+ ++ G
Sbjct: 51 FDKFMNWVRGSSMFMLQFGIACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADVMIVPGT 110
Query: 69 VTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMP 128
+ K R+ Y+ P+PK+V+ G+C +GG + + YN +K ++ IPVD+ I GC P
Sbjct: 111 IVSKFAPRMKRVYDQMPEPKFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIHIPGCPP 170
Query: 129 RPEAVLDGIYKLMEMIENGEA 149
RPEA++ G+ KL E I NGE+
Sbjct: 171 RPEALVYGVAKLQERIANGES 191
>sp|P29918|NQO6_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NADH DEHYDROGENASE 1, CHAIN
6) (NDH-1, CHAIN 6) >gi|281482|pir||E42573 psbG homolog
protein - Paracoccus denitrificans
Length = 173
Score = 116 bits (289), Expect = 1e-25
Identities = 55/139 (39%), Positives = 79/139 (56%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
E + NWAR SL ++F C +EM RYD+ERFG P SPRQ DL ++ G +T
Sbjct: 33 EDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLT 92
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 93 NKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 152
Query: 131 EAVLDGIYKLMEMIENGEA 149
EA+L GI +L A
Sbjct: 153 EALLYGILQLQRRASGAPA 171
>emb|CAA76119.1| (Y16191) echC [Methanosarcina barkeri]
Length = 156
Score = 116 bits (288), Expect = 2e-25
Identities = 57/130 (43%), Positives = 80/130 (60%), Gaps = 3/130 (2%)
Query: 20 KSLWIVSF-CTGCGG--IEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKR 76
KS WI+ C C G IE+ +T YD ERFG++ +P+Q D+ ++TG V K +
Sbjct: 5 KSPWIIHVNCNSCNGCDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVNV 64
Query: 77 IIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVLDG 136
+ Y PDPK VLA G+C GGI+ D YN I +D+ IPVD ++ GC PRPEA+LDG
Sbjct: 65 LKNIYNQIPDPKVVLAVGACASTGGIFHDCYNVIGGVDQVIPVDAYVPGCCPRPEAILDG 124
Query: 137 IYKLMEMIEN 146
+ + ++EN
Sbjct: 125 VVAALSILEN 134
>emb|CAC12098.1| (AL445066) probable NADH dehydrogenase, chain B [Thermoplasma
acidophilum]
Length = 149
Score = 116 bits (288), Expect = 2e-25
Identities = 62/136 (45%), Positives = 81/136 (58%), Gaps = 2/136 (1%)
Query: 16 WARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGM-IPDPSPRQYDLFLITGYVTPKTL 74
WAR SLW ++F C IEM + S DI RFG I SPRQ DL +++G VT K
Sbjct: 14 WARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSPRQSDLMIVSGTVTKKMA 73
Query: 75 KRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVL 134
R+ Y+ P PKYV+A G C + GG Y Y+ + +D+ +PVDV+I GC P PEA+
Sbjct: 74 PRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDRVVPVDVYIPGCPPTPEALT 133
Query: 135 DGIYKLMEMIENGEAD 150
+GI L + I GEAD
Sbjct: 134 NGIILLQKKI-RGEAD 148
>gb|AAA79257.1| (M26930) photosystem II protein G [Paramecium aurelia]
Length = 156
Score = 116 bits (287), Expect = 3e-25
Identities = 56/132 (42%), Positives = 79/132 (59%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L +WAR+ S W ++F C +EM SRYD +RFG+I +PRQ DL ++ G VT K
Sbjct: 15 LISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLIIVAGTVTNK 74
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEA 132
+ Y+ + DPK+VL+ GSC GG Y SY +K DK IPVD+F+ GC P EA
Sbjct: 75 MAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPTAEA 134
Query: 133 VLDGIYKLMEMI 144
+ G+ +L + +
Sbjct: 135 LFFGVLQLQKTL 146
>gi|11466261 NADH dehydrogenase subunit 10 [Tetrahymena pyriformis]
>gi|5306137|gb|AAD41921.1|AF160864_9 (AF160864) NADH
dehydrogenase subunit 10 [Tetrahymena pyriformis]
Length = 162
Score = 115 bits (286), Expect = 3e-25
Identities = 55/143 (38%), Positives = 86/143 (59%)
Query: 15 NWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTL 74
+WAR+ S W ++F C +EM SRYD +RFG+I +PRQ DL L+ G +T K
Sbjct: 15 SWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLILVAGTLTNKMA 74
Query: 75 KRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVL 134
+ YE + DPK+VL+ GSC GG Y SY+ ++ ++ IPVD+++ GC P EA++
Sbjct: 75 PGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVPGCPPTAEALM 134
Query: 135 DGIYKLMEMIENGEADGWKRYKE 157
G+ +L + + +G K+Y +
Sbjct: 135 FGVLQLQKSLYRQVNEGEKKYNK 157
>sp|O68853|NUB1_RHIME NADH DEHYDROGENASE I CHAIN B 1 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN B 1) >gi|5650735|emb|CAB51621.1| (AJ245398) nuoB1
[Sinorhizobium meliloti]
Length = 192
Score = 115 bits (285), Expect = 4e-25
Identities = 53/134 (39%), Positives = 79/134 (58%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR SL ++F C +EM + RYD ERFG P SPRQ D+ ++ G +T
Sbjct: 51 DELINWARTGSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLT 110
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 111 NKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTA 170
Query: 131 EAVLDGIYKLMEMI 144
EA+L G+ L + I
Sbjct: 171 EALLYGVLLLQKKI 184
>emb|CAB65525.1| (AJ250340) subunit NUKM of protein NADH:Ubiquinone Oxidoreductase
(Complex I) [Yarrowia lipolytica]
Length = 210
Score = 115 bits (285), Expect = 4e-25
Identities = 58/162 (35%), Positives = 91/162 (55%), Gaps = 10/162 (6%)
Query: 5 VDWRL--FEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDL 62
VD+ L + + NWAR+ S W V+F C +EM + RYD +R G+I SPRQ D+
Sbjct: 57 VDYTLTTLDAVANWARQGSFWPVTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDI 116
Query: 63 FLITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVF 122
++ G +T K + Y+ P+P++V++ GSC GG Y SY+ ++ D+ +PVDV+
Sbjct: 117 MIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSCANGGGYYHFSYSVVRGCDRIVPVDVY 176
Query: 123 IAGCMPRPEAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
+ GC P EA++ G+++L + N K WYRK
Sbjct: 177 VPGCPPTSEALMYGVFQLQRKMRN--------TKITRMWYRK 210
>sp|O84970|NUOB_RHOCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|3282560|gb|AAC24986.1| (AF029365) NUOB
[Rhodobacter capsulatus]
Length = 177
Score = 115 bits (284), Expect = 6e-25
Identities = 52/134 (38%), Positives = 79/134 (58%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
E + NWAR SL ++F C +EM RYD+ER+G P SPRQ D+ ++ G +T
Sbjct: 36 EDIINWARNGSLHWMTFGLACCAVEMMHTAMPRYDVERYGFAPRASPRQSDVMIVAGTLT 95
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 96 NKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSA 155
Query: 131 EAVLDGIYKLMEMI 144
EA++ GI +L I
Sbjct: 156 EALMYGILQLQRKI 169
>pir||D75115 co-induced hydrogenase related, chain l PAB1890 - Pyrococcus abyssi
(strain Orsay) >gi|5458148|emb|CAB49637.1| (AJ248285)
CO-induced hydrogenase related, subunit L [Pyrococcus
abyssi]
Length = 170
Score = 115 bits (284), Expect = 6e-25
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 28 CTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSPDP 87
C GC IE+ +T RYD ERFG+ SPR D+ L+TG VT ++L+R+ + YE +P+P
Sbjct: 40 CNGCD-IEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEP 98
Query: 88 KYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVLDGIYKLMEMI 144
K V+A GSCP G ++++S LD+ IPVDVF+ GC PRPEA+L G+ +E +
Sbjct: 99 KIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
>pir||D82821 NADH-ubiquinone oxidoreductase, NQO6 subunit XF0306 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105129|gb|AAF83117.1|AE003884_2 (AE003884)
NADH-ubiquinone oxidoreductase, NQO6 subunit [Xylella
fastidiosa]
Length = 191
Score = 114 bits (282), Expect = 1e-24
Identities = 51/134 (38%), Positives = 82/134 (61%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NWAR S+W ++F C +EM +R D++R+G++ PSPRQ D+ ++ G +
Sbjct: 50 DALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLV 109
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ PDPK+V++ GSC GG Y SY+ ++ D+ +PVDV++ GC P
Sbjct: 110 NKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTA 169
Query: 131 EAVLDGIYKLMEMI 144
EA++ GI +L + I
Sbjct: 170 EALVYGILQLQKKI 183
>gb|AAK40969.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus]
Length = 170
Score = 113 bits (281), Expect = 1e-24
Identities = 53/141 (37%), Positives = 83/141 (58%)
Query: 4 MVDWRLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLF 63
+++ + + + +W SLW F T C G E +R+D ER+GM+P S RQ ++
Sbjct: 22 LINRKPIKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNIL 81
Query: 64 LITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFI 123
++ G ++ K + I Y+ P+PKYV+A G+C L GGI+W+SYN + D IPVD+++
Sbjct: 82 ILEGTLSRKMGRAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDIGIPVDLYV 141
Query: 124 AGCMPRPEAVLDGIYKLMEMI 144
GC RPEAV + L + I
Sbjct: 142 PGCPIRPEAVARAVLMLQKKI 162
>pir||C72621 probable NADH dehydrogenase (ubiquinone) chain 10 APE1428 -
Aeropyrum pernix (strain K1) >gi|5105111|dbj|BAA80425.1|
(AP000061) 202aa long hypothetical NADH dehydrogenase
(ubiquinone) chain 10 [Aeropyrum pernix]
Length = 202
Score = 113 bits (281), Expect = 1e-24
Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 11/173 (6%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ + +WA SLW V T C E R D E+FG +P PRQ +L +I G VT
Sbjct: 35 DKMVDWATSFSLWPVHLTTSCCSTEFAATFAPRIDGEQFGALPWVGPRQTNLIIIEGTVT 94
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + +T+E P PK+ +A G+C L+GG++++SYN +K + +P+D++I GC PRP
Sbjct: 95 KKMACAVRLTWEQMPHPKFAIAMGACALDGGLFYNSYNIVKPW-QVLPIDIYIPGCPPRP 153
Query: 131 EAVLDGIYKLMEMIENGE-ADGWKRYKENYEWYRKNQDELLGE----GWREKE 178
E V I +L I + + A GW R E +R +++ L+ GW K+
Sbjct: 154 EGVARAIVELQRKIRSKKIASGWVR-----EGWRPDREPLIPTEDLCGWAVKK 201
>emb|CAB57637.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 170
Score = 113 bits (281), Expect = 1e-24
Identities = 53/141 (37%), Positives = 83/141 (58%)
Query: 4 MVDWRLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLF 63
+++ + + + +W SLW F T C G E +R+D ER+GM+P S RQ ++
Sbjct: 22 LINRKPIKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNIL 81
Query: 64 LITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFI 123
++ G ++ K + I Y+ P+PKYV+A G+C L GGI+W+SYN + D IPVD+++
Sbjct: 82 ILEGTLSRKMGRAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDIGIPVDLYV 141
Query: 124 AGCMPRPEAVLDGIYKLMEMI 144
GC RPEAV + L + I
Sbjct: 142 PGCPIRPEAVARAVLMLQKKI 162
>pir||E71017 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257858|dbj|BAA30541.1| (AP000006) 173aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 173
Score = 112 bits (278), Expect = 3e-24
Identities = 58/129 (44%), Positives = 80/129 (61%), Gaps = 5/129 (3%)
Query: 20 KSLWIVSF----CTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLK 75
KS W+ C GC IE+ +T RYD ERFG+ SPR D+ L+TG VT ++L+
Sbjct: 31 KSPWVFHVNSGSCNGCD-IEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLE 89
Query: 76 RIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVLD 135
R+ + YE +PDPK V+A GSC G ++++S LD IPVDVF+ GC PRPEA+L
Sbjct: 90 RVKLVYEQTPDPKIVIAVGSCATGGSVFYESPFTNAPLDNVIPVDVFVPGCPPRPEAILY 149
Query: 136 GIYKLMEMI 144
G+ +E +
Sbjct: 150 GVVLALEKL 158
>pir||F81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain B NMA0018
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7378796|emb|CAB83338.1| (AL162752) NADH
dehydrogenase I chain B [Neisseria meningitidis Z2491]
Length = 160
Score = 112 bits (277), Expect = 4e-24
Identities = 52/135 (38%), Positives = 83/135 (60%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ + N+ R SLW V+F C +EM +RYD++RFG+I PSPRQ DL ++ G +T
Sbjct: 17 DTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLT 76
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ +P++VL+ GSC GG Y SY+ ++ D+ +PVDV++ GC P
Sbjct: 77 NKMASALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTA 136
Query: 131 EAVLDGIYKLMEMIE 145
EA++ G+ +L + I+
Sbjct: 137 EALIYGLIQLQQKIK 151
>pir||H81221 NADH dehydrogenase I, B chain NMB0242 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225464|gb|AAF40696.1| (AE002381) NADH dehydrogenase
I, B subunit [Neisseria meningitidis MC58]
Length = 160
Score = 111 bits (276), Expect = 5e-24
Identities = 52/135 (38%), Positives = 83/135 (60%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ + N+ R SLW V+F C +EM +RYD++RFG+I PSPRQ DL ++ G +T
Sbjct: 17 DTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLT 76
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ +P++VL+ GSC GG Y SY+ ++ D+ +PVDV++ GC P
Sbjct: 77 NKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTA 136
Query: 131 EAVLDGIYKLMEMIE 145
EA++ G+ +L + I+
Sbjct: 137 EALIYGLIQLQQKIK 151
>sp|Q94360|NUKM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR
(COMPLEX I-20KD) (CI-20KD) >gi|7509195|pir||T26329
hypothetical protein W10D5.2 - Caenorhabditis elegans
>gi|3880584|emb|CAB02132.1| (Z79758) Similarity to
Bovine NADH-ubiquinone oxidoreductase 20 KD subunit
(SW:NUKM_BOVIN), contains similarity to Pfam domain:
PF01058 (NADH ubiquinone oxidoreductase, 20 Kd subunit),
Score=224.4, E-value=5.4e-64, N=1~cDNA EST yk98a6.3
comes from this>
Length = 199
Score = 111 bits (274), Expect = 8e-24
Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 8/154 (5%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ + N A++ S+W ++F C +EM RYD++R+G++ SPRQ DL + G VT
Sbjct: 54 DDVLNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQADLIFVAGTVT 113
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ P+ K+V++ GSC GG Y +Y+ ++ D+ IPVD+++ GC P
Sbjct: 114 NKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVDIYVPGCPPTA 173
Query: 131 EAVLDGIYKLMEMIENGEADGWKRYKENYEWYRK 164
EA+L G+ +L + I KR +E WYR+
Sbjct: 174 EALLYGVLQLQKKI--------KRKREAQLWYRR 199
>gb|AAC12755.1| (AF055637) NADH-ubiqionone oxidoreductase subunit NuoB
[Sinorhizobium meliloti]
Length = 165
Score = 110 bits (273), Expect = 1e-23
Identities = 53/135 (39%), Positives = 77/135 (56%), Gaps = 1/135 (0%)
Query: 11 EPLFNWARKKSL-WIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYV 69
+ L NWAR SL W C +EM + RYD ERFG P SPRQ D+ ++ G +
Sbjct: 23 DELINWARTGSLMWNELSVLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTL 82
Query: 70 TPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPR 129
T K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 83 TNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPT 142
Query: 130 PEAVLDGIYKLMEMI 144
EA+L G+ L + I
Sbjct: 143 AEALLYGVLLLQKKI 157
>emb|CAB67131.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit K [Oenothera
elata subsp. hookeri]
Length = 247
Score = 109 bits (269), Expect = 3e-23
Identities = 60/157 (38%), Positives = 87/157 (55%), Gaps = 11/157 (7%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L NW+R SLW + + T C IE L+ SR+D +R+G++P SPRQ DL L G VT K
Sbjct: 47 LSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMK 106
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
++ YE P+PKYV+A G+C + GG++ DSY+ + A C P+PE
Sbjct: 107 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTGSWSRQANSCRCLFASCPPKPE 166
Query: 132 AVLDGIYKLMEMIENGEADGWKRYKENYEWYRKNQDE 168
A++D I KL + I +E YE ++Q+E
Sbjct: 167 AIIDAITKLRKKIS----------REIYEDRFRSQEE 193
>pir||T51316 probable CO-induced hydrogenase complex chain CooL [imported] -
Rhodospirillum rubrum >gi|1515468|gb|AAC45118.1|
(U65510) CooL [Rhodospirillum rubrum]
Length = 142
Score = 108 bits (268), Expect = 4e-23
Identities = 51/129 (39%), Positives = 82/129 (63%), Gaps = 4/129 (3%)
Query: 19 KKSLWIVSFCTG-CGGIEMPPLMTS---RYDIERFGMIPDPSPRQYDLFLITGYVTPKTL 74
KKS W+ G C G ++ T+ RYD+ER G SP+ D+ L+TG +T +
Sbjct: 9 KKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCQYCGSPKHADIVLVTGPLTARVK 68
Query: 75 KRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVL 134
+++ YE PDPK +A G CP++GG++ +SY+ + +D+Y+PVDV + GC PRP+A++
Sbjct: 69 DKVLRVYEEIPDPKVTVAIGVCPISGGVFRESYSIVGPIDRYLPVDVNVPGCPPRPQAII 128
Query: 135 DGIYKLMEM 143
+GI K +E+
Sbjct: 129 EGIAKAIEI 137
>pir||C83316 NADH dehydrogenase I chain B PA2638 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948706|gb|AAG06026.1|AE004692_5 (AE004692) NADH
dehydrogenase I chain B [Pseudomonas aeruginosa]
Length = 225
Score = 108 bits (268), Expect = 4e-23
Identities = 58/131 (44%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 15 NWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGM-IPDPSPRQYDLFLITGYVTPKT 73
NW RK SLW +F C +EM T+ +DI RFG + SPRQ D +I G K
Sbjct: 52 NWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKM 111
Query: 74 LKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAV 133
I YE +PK+V++ GSC +GG+Y D Y+ ++ +DK++PVDV+I GC PRPEA
Sbjct: 112 APVIQRLYEQMLEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAF 170
Query: 134 LDGIYKLMEMI 144
L G+ L E I
Sbjct: 171 LQGLMLLQESI 181
>sp|P15602|NUKM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT >gi|72692|pir||F2PPG
psbG protein - Paramecium tetraurelia mitochondrion
>gi|578753|emb|CAA34045.1| (X15917) psbG protein (AA
1-156) [Paramecium aurelia]
Length = 156
Score = 108 bits (267), Expect = 6e-23
Identities = 54/132 (40%), Positives = 76/132 (56%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L +WAR+ S W ++F C +EM SRYD +RFG+I +PRQ DL ++ G VT K
Sbjct: 15 LISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLIIVAGTVTNK 74
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEA 132
+ Y+ + DPK+VL+ GSC GG Y SY +K DK IPVD+ C P EA
Sbjct: 75 MAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDMLCPRCPPTAEA 134
Query: 133 VLDGIYKLMEMI 144
+ G+ +L + +
Sbjct: 135 LFFGVLQLQKTL 146
>gi|8928600 NADH dehydrogenase subunit 10 [Paramecium aurelia]
Length = 154
Score = 108 bits (267), Expect = 6e-23
Identities = 54/132 (40%), Positives = 76/132 (56%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L +WAR+ S W ++F C +EM SRYD +RFG+I +PRQ DL ++ G VT K
Sbjct: 13 LISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLIIVAGTVTNK 72
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEA 132
+ Y+ + DPK+VL+ GSC GG Y SY +K DK IPVD+ C P EA
Sbjct: 73 MAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDMLCPRCPPTAEA 132
Query: 133 VLDGIYKLMEMI 144
+ G+ +L + +
Sbjct: 133 LFFGVLQLQKTL 144
>gb|AAF97798.1|AF281148_2 (AF281148) NADH dehydrogenase I subunit B [Pseudomonas fluorescens]
Length = 224
Score = 108 bits (267), Expect = 6e-23
Identities = 57/131 (43%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 15 NWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGM-IPDPSPRQYDLFLITGYVTPKT 73
NW RK SLW +F C +EM T+ +DI RFG + SPRQ D +I G K
Sbjct: 51 NWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKM 110
Query: 74 LKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAV 133
I YE +PK+V++ GSC +GG+Y D Y+ ++ +DK++PVDV++ GC PRPEA
Sbjct: 111 APIIQRLYEQMLEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAF 169
Query: 134 LDGIYKLMEMI 144
L G+ L E I
Sbjct: 170 LQGLMLLQESI 180
>pir||E64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 -
Helicobacter pylori (strain 26695)
>gi|2314428|gb|AAD08307.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO6 subunit (NQO6) [Helicobacter pylori
26695]
Length = 159
Score = 107 bits (265), Expect = 1e-22
Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NW R SLW +++ C IEM SR+D +RFG I SPRQ D+ +I G +T
Sbjct: 12 DKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMIIAGTLT 71
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + + Y+ P+PK+V++ GSC GG++ ++Y ++ D+ +PVD+++ GC PRP
Sbjct: 72 KKHAEFMRRLYDQMPEPKWVISMGSCANTGGMF-NTYATVQGADRVVPVDIYLPGCAPRP 130
Query: 131 EAVLDGIYKLMEMIENGEA 149
E + + L + I +A
Sbjct: 131 ETLQYALMVLQDKIRRSKA 149
>pir||C71838 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 -
Helicobacter pylori (strain J99)
>gi|4155792|gb|AAD06768.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 159
Score = 107 bits (265), Expect = 1e-22
Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L NW R SLW +++ C IEM SR+D +RFG I SPRQ D+ +I G +T
Sbjct: 12 DKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMIIAGTLT 71
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + + Y+ P+PK+V++ GSC GG++ ++Y ++ D+ +PVD+++ GC PRP
Sbjct: 72 KKHAEFMRRLYDQMPEPKWVISMGSCANTGGMF-NTYATVQGADRVVPVDIYLPGCAPRP 130
Query: 131 EAVLDGIYKLMEMIENGEA 149
E + + L + I +A
Sbjct: 131 ETLQYALMVLQDKIRRSKA 149
>pir||S37059 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B - Escherichia
coli >gi|397899|emb|CAA48361.1| (X68301) NADH
dehydrogenase I, subunit nuoB [Escherichia coli]
Length = 220
Score = 106 bits (262), Expect = 2e-22
Identities = 54/133 (40%), Positives = 80/133 (59%), Gaps = 2/133 (1%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGM-IPDPSPRQYDLFLITGYVTP 71
+ NW RK S+W +F C +EM L T+ +D+ RFG + SPRQ DL ++ G
Sbjct: 45 MVNWGRKNSIWPYNFGLSCCYVEMVTLFTAVHDVARFGAEVLRASPRQADLMVVAGTCFT 104
Query: 72 KTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
K I Y+ +PK+V++ G+C +GG+Y D Y+ ++ +DK+IPVDV+I GC PRPE
Sbjct: 105 KMAPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPE 163
Query: 132 AVLDGIYKLMEMI 144
A + + L E I
Sbjct: 164 AYMQALMLLQESI 176
>sp|O67334|NUOB_AQUAE NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|7443158|pir||C70413 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain nuoB - Aquifex
aeolicus >gi|2983736|gb|AAC07297.1| (AE000734) NADH
dehydrogenase I chain B [Aquifex aeolicus]
Length = 179
Score = 105 bits (259), Expect = 5e-22
Identities = 50/135 (37%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
E L W R+ SLW V+ C IEM SR+D++R G+I SPRQ D+ ++ G V
Sbjct: 15 EELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQADVLIVAGTVV 74
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + + ++ PDPK+ ++ G C GG + +Y+ ++ +D+ IPVDV+I GC P P
Sbjct: 75 NKVAPMLKLIWDQMPDPKWCISMGGCASAGGPF-PTYSTLQGVDRIIPVDVYIPGCPPTP 133
Query: 131 EAVLDGIYKLMEMIE 145
+ ++ GI +L I+
Sbjct: 134 QGLIYGILQLQRKIK 148
>sp|P57253|NUOB_BUCAI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|10038838|dbj|BAB12873.1| (AP001118) NADH
dehydrogenase I chain B [Buchnera sp. APS]
Length = 224
Score = 105 bits (259), Expect = 5e-22
Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 8 RLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGM-IPDPSPRQYDLFLIT 66
+L L NW RK SLW +F C +EM TS +D+ RFG + SPRQ D+ +I
Sbjct: 44 QLLHKLVNWGRKNSLWPYNFGLSCCYVEMVSAFTSVHDVARFGSEVLRASPRQADVMVIA 103
Query: 67 GYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGC 126
G K I Y+ +PK+V++ G+C +GG+Y D Y+ ++ +DK++PVD++I GC
Sbjct: 104 GTPFIKMAPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDIYIPGC 162
Query: 127 MPRPEAVLDGIYKLMEMI 144
PRPEA + + L ++I
Sbjct: 163 PPRPEAYMQALILLQKLI 180
>sp|P33598|NUOB_ECOLI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
2) (NUO2) >gi|7428919|pir||E65000 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain B - Escherichia coli
>gi|1788624|gb|AAC75347.1| (AE000318) NADH dehydrogenase
I chain B [Escherichia coli K12]
Length = 220
Score = 104 bits (256), Expect = 1e-21
Identities = 53/133 (39%), Positives = 79/133 (58%), Gaps = 2/133 (1%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGM-IPDPSPRQYDLFLITGYVTP 71
+ NW RK S+W +F C +EM T+ +D+ RFG + SPRQ DL ++ G
Sbjct: 45 MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFT 104
Query: 72 KTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPE 131
K I Y+ +PK+V++ G+C +GG+Y D Y+ ++ +DK+IPVDV+I GC PRPE
Sbjct: 105 KMAPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPE 163
Query: 132 AVLDGIYKLMEMI 144
A + + L E I
Sbjct: 164 AYMQALMLLQESI 176
>pir||H81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain B Cj1578c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968995|emb|CAB73566.1| (AL139079) NADH
dehydrogenase I chain B [Campylobacter jejuni]
Length = 167
Score = 104 bits (256), Expect = 1e-21
Identities = 51/139 (36%), Positives = 80/139 (56%), Gaps = 1/139 (0%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVT 70
+ L W R SLW +S+ C IEM SRYD +RFG I SPR ++ +I G +
Sbjct: 20 DKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLC 79
Query: 71 PKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRP 130
K + Y+ PDPK+V++ GSC GG++ ++Y+ ++ +D+ IPVD+++ GC PRP
Sbjct: 80 KKHAEFTRRLYDQMPDPKWVISMGSCANTGGMF-NTYSTVQGVDRIIPVDIYVPGCAPRP 138
Query: 131 EAVLDGIYKLMEMIENGEA 149
E+ + L + I +A
Sbjct: 139 ESFQFALMILQKKIRKEKA 157
>pir||T34623 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nuoB -
Streptomyces coelicolor >gi|5042276|emb|CAB44530.1|
(AL078618) nuo, NADH dehydrogenase subunit [Streptomyces
coelicolor]
Length = 184
Score = 103 bits (254), Expect = 2e-21
Identities = 51/139 (36%), Positives = 83/139 (59%), Gaps = 2/139 (1%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGM-IPDPSPRQYDLFLITGYV 69
E W RK S++ +F C IEM RYD+ RFGM + SPRQ DL ++ G V
Sbjct: 17 EQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGSPRQADLMIVAGRV 76
Query: 70 TPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPR 129
+ K + Y+ P+PK+V++ G C +GG++ ++Y ++ +D +PVD+++ GC PR
Sbjct: 77 SQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMF-NNYAIVQGVDHVVPVDIYLPGCPPR 135
Query: 130 PEAVLDGIYKLMEMIENGE 148
PE ++D I KL + I++ +
Sbjct: 136 PEMLMDAILKLHQKIQSSK 154
>pir||C75388 NADH dehydrogenase I, B subunit - Deinococcus radiodurans (strain
R1) >gi|6459265|gb|AAF11070.1|AE001994_6 (AE001994) NADH
dehydrogenase I, B subunit [Deinococcus radiodurans]
Length = 181
Score = 103 bits (254), Expect = 2e-21
Identities = 51/140 (36%), Positives = 84/140 (59%), Gaps = 3/140 (2%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGM-IPDPSPRQYDLFLITGYV 69
E L W R SLW +F C IEM +R D+ RFG + SPRQ D+ ++ G +
Sbjct: 25 EKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDMSRFGSEVFRASPRQADVMIVAGRL 84
Query: 70 TPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPR 129
+ K + Y+ PDPK+V++ G+C +GG++ ++Y ++++D +PVD+F+ GC PR
Sbjct: 85 SKKMAPVMRRVYDQMPDPKWVISMGACASSGGMF-NNYAVVQNVDSVVPVDIFVPGCPPR 143
Query: 130 PEAVLDGIYKLMEMIENGEA 149
PEA++ + +L + + GEA
Sbjct: 144 PEALIYAVMQLQKKV-RGEA 162
>sp|Q56218|NQO6_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NADH DEHYDROGENASE 1, CHAIN
6) (NDH-1, CHAIN 6) >gi|7443162|pir||T11899 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 -
Thermus aquaticus thermophilus
>gi|1279862|gb|AAA97939.1| (U52917) NADH dehydrogenase
I, subunit NQO6 [Thermus thermophilus]
Length = 181
Score = 102 bits (253), Expect = 2e-21
Identities = 56/164 (34%), Positives = 91/164 (55%), Gaps = 12/164 (7%)
Query: 2 REMVDWRLFEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGM-IPDPSPRQY 60
RE + + E L W R SLW +F C IEM +R D+ RFG + SPRQ
Sbjct: 16 REGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQA 75
Query: 61 DLFLITGYVTPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVD 120
D+ ++ G ++ K + +E PDPK+V++ G+C +GG++ ++Y ++++D +PVD
Sbjct: 76 DVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMF-NNYAIVQNVDSVVPVD 134
Query: 121 VFIAGCMPRPEAVLDGIYKLMEMI------ENGE----ADGWKR 154
V++ GC PRPEA++ + +L + + E GE WKR
Sbjct: 135 VYVPGCPPRPEALIYAVMQLQKKVRGQAYNERGERLPPVAAWKR 178
>sp|O85274|NUOB_ERWCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
2) (NUO2) >gi|3273736|gb|AAC38641.1| (AF057063) NADH
dehydrogenase chain B [Pectobacterium carotovorum subsp.
carotovorum]
Length = 224
Score = 101 bits (249), Expect = 7e-21
Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Query: 15 NWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGM-IPDPSPRQYDLFLITGYVTPKT 73
NW R+ SLW +F C +EM T+ +D+ RFG + SPRQ D ++ G K
Sbjct: 51 NWGRQNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKM 110
Query: 74 LKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAV 133
I YE +PK+V++ G+C +GG+Y D Y+ ++ +DK++PVDV+I GC PRPEA
Sbjct: 111 APVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAY 169
Query: 134 LDGIYKLMEMI 144
+ + L E I
Sbjct: 170 MQALLLLKESI 180
>sp|P95180|NUOB_MYCTU NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|7443159|pir||C70647 probable nuoB protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|1781222|emb|CAB06270.1| (Z83867) nuoB [Mycobacterium
tuberculosis]
Length = 184
Score = 100 bits (246), Expect = 2e-20
Identities = 53/136 (38%), Positives = 79/136 (57%), Gaps = 2/136 (1%)
Query: 11 EPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIP-DPSPRQYDLFLITGYV 69
E + + RK SLW +F C IEM R+DI RFGM +PRQ DL ++ G V
Sbjct: 17 EKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADLMIVAGRV 76
Query: 70 TPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPR 129
+ K + Y+ +PK+VLA G C +GG++ ++Y ++ +D +PVD+++ GC PR
Sbjct: 77 SQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMF-NNYAIVQGVDHVVPVDIYLPGCPPR 135
Query: 130 PEAVLDGIYKLMEMIE 145
PE +L I KL E I+
Sbjct: 136 PEMLLHAILKLHEKIQ 151
>sp|Q26783|NUKM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|162168|gb|AAA30217.1| (L00585)
NADH dehydrogenase (ubiquinone) [Trypanosoma brucei]
Length = 202
Score = 97.5 bits (239), Expect = 1e-19
Identities = 47/132 (35%), Positives = 76/132 (56%)
Query: 13 LFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
L W S W ++F C +EM SRYD++RFG++P P+PRQ ++ +++G VT K
Sbjct: 59 LTEWCLAYSPWPLTFGLACCAVEMMHAYASRYDLDRFGIVPRPTPRQAEIIIVSGTVTNK 118
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEA 132
+ Y +PK+V++ GSC GG Y SY ++ ++ IPVD +I GC P E+
Sbjct: 119 MAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPPSAES 178
Query: 133 VLDGIYKLMEMI 144
++ ++ L + I
Sbjct: 179 LVFCLHTLQKKI 190
>pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii
Length = 153
Score = 95.2 bits (233), Expect = 5e-19
Identities = 51/126 (40%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 18 RKKSLWIVSFCTG-CGG--IEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTL 74
RK+S+ + TG C G IE+ + RYDIE++G+ +PR+ D+ L+TG VT +
Sbjct: 12 RKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 71
Query: 75 KRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVL 134
+R+ YE +P+PK V+A G+C L+GGI+ + + + +DK IPVD I GC PRP ++
Sbjct: 72 ERLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEII 130
Query: 135 DGIYKL 140
+ I K+
Sbjct: 131 ETILKV 136
>gb|AAB98505.1| (U67501) carbon monoxide dehydrogenase, hydrogenase subunit CooL
(cooL) [Methanococcus jannaschii]
Length = 148
Score = 95.2 bits (233), Expect = 5e-19
Identities = 51/126 (40%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 18 RKKSLWIVSFCTG-CGG--IEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTL 74
RK+S+ + TG C G IE+ + RYDIE++G+ +PR+ D+ L+TG VT +
Sbjct: 7 RKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 66
Query: 75 KRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVL 134
+R+ YE +P+PK V+A G+C L+GGI+ + + + +DK IPVD I GC PRP ++
Sbjct: 67 ERLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEII 125
Query: 135 DGIYKL 140
+ I K+
Sbjct: 126 ETILKV 131
>sp|P16433|HYCG_ECOLI FORMATE HYDROGENLYASE SUBUNIT 7 (FHL SUBUNIT 7) (HYDROGENASE-3
COMPONENT G) >gi|78777|pir||S08625 hydrogenase (EC
1.18.99.1) 3 chain 7 - Escherichia coli
>gi|882612|gb|AAA69229.1| (U29579) formate hydrogenlyase
subunit 7 [Escherichia coli] >gi|1789074|gb|AAC75761.1|
(AE000356) hydrogenase activity [Escherichia coli K12]
Length = 255
Score = 91.7 bits (224), Expect = 6e-18
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 28 CTGCGG--IEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSP 85
C GC G IE+ ++ +D ERFG+ PSPR D+ L TG VT + ++ +P
Sbjct: 45 CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAP 104
Query: 86 DPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVLDGIYKLMEMIE 145
DPK +++G+C +GGI+ D Y DK +PVDV+I GC P P A L G + ++E
Sbjct: 105 DPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
>emb|CAA35552.1| (X17506) hycG [Escherichia coli] >gi|1093500|prf||2104213G hycG
gene [Escherichia coli]
Length = 255
Score = 91.3 bits (223), Expect = 8e-18
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 28 CTGCGG--IEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSP 85
C GC G IE+ ++ +D ERFG+ PSPR D+ L TG VT + ++ +P
Sbjct: 45 CGGCNGCEIEIFGTLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAP 104
Query: 86 DPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVLDGIYKLMEMIE 145
DPK +++G+C +GGI+ D Y DK +PVDV+I GC P P A L G + ++E
Sbjct: 105 DPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
>pir||C75060 hydrogenase (EC 1.-.-.-) 4 component I PAB1396 [imported] -
Pyrococcus abyssi (strain Orsay)
>gi|5458889|emb|CAB50376.1| (AJ248287) HYDROGENASE-4
COMPONENT I (EC 1.-.-.-). [Pyrococcus abyssi]
Length = 271
Score = 91.3 bits (223), Expect = 8e-18
Identities = 57/168 (33%), Positives = 88/168 (51%), Gaps = 20/168 (11%)
Query: 20 KSLWI----VSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLK 75
KSLW+ C GC IE+ ++T YD+ER G+ P+PR D LITG +T +T
Sbjct: 5 KSLWVYHVDAGSCNGCD-IEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRM 63
Query: 76 RIIITYE-LSPDPKYVLAHGSCPLNGGIYWDSYNAIK-------------HLDKYIPVDV 121
I YE + P P+ V+A G+C +GGI+++SY ++ +PVD+
Sbjct: 64 AIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDM 123
Query: 122 FIAGCMPRPEAVLDGIYKLMEMIENG-EADGWKRYKENYEWYRKNQDE 168
+I GC P PE +L G+ +L+ + E + + WK E +N+ E
Sbjct: 124 YIPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEGKAENEVE 171
>emb|CAB52769.1| (AJ243655) hydrogenase small subunit [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 87.0 bits (212), Expect = 2e-16
Identities = 41/111 (36%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 28 CTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSPDP 87
C GC IE+ L++ RYD+E++G+ +PR+ D+ L+TG VT + +++ Y +P+P
Sbjct: 24 CNGCD-IEVLALLSPRYDLEQYGIYVHQNPREADVILVTGAVTEQWREKLQRIYSKAPEP 82
Query: 88 KYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPEAVLDGI 137
K V+A G+CP++G ++ + + + +IPVDV + GC PRP +L+ I
Sbjct: 83 KIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDVEVPGCPPRPFEILEAI 133
>pir||E69151 formate hydrogenlyase, subunit 7 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621459|gb|AAB84903.1| (AE000824) formate
hydrogenlyase, subunit 7 [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 86.6 bits (211), Expect = 2e-16
Identities = 40/111 (36%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 28 CTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSPDP 87
C GC IE+ L++ RYD+E++G+ +PR+ D+ L+TG VT + +++ Y +P+P
Sbjct: 24 CNGCD-IEVLALLSPRYDLEQYGIYVHQNPREADVILVTGAVTEQWREKLQRIYRKAPEP 82
Query: 88 KYVLAHGSCPLNGGIY-WDSYNAIKHLDKYIPVDVFIAGCMPRPEAVLDGI 137
K V+A G+CP++G ++ + + + +IPVD + GC PRP +L+ I
Sbjct: 83 KIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPGCPPRPSEILEAI 133
>sp|P77668|HYFI_ECOLI HYDROGENASE-4 COMPONENT I >gi|7443160|pir||H65024 psbG homolog
protein b2489 - Escherichia coli (strain K-12)
>gi|1788834|gb|AAC75542.1| (AE000335) hydrogenase 4 Fe-S
subunit [Escherichia coli K12]
>gi|2668498|gb|AAB88571.1| (M63654) HyfI [Escherichia
coli]
Length = 252
Score = 83.1 bits (202), Expect = 2e-15
Identities = 43/120 (35%), Positives = 65/120 (53%), Gaps = 2/120 (1%)
Query: 28 CTGCGG--IEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSP 85
C GC IE+ +T +D ERFG+ SPR D+ L TG VT + YE +P
Sbjct: 41 CGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAP 100
Query: 86 DPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVLDGIYKLMEMIE 145
D K +++G+C + GGI+ D Y+ D +P+DV+I GC P P A + G + +++
Sbjct: 101 DHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ 160
>dbj|BAA16377.1| (D90877) probable hydrogenase 3 protein 7 [Escherichia coli]
Length = 251
Score = 83.1 bits (202), Expect = 2e-15
Identities = 43/120 (35%), Positives = 65/120 (53%), Gaps = 2/120 (1%)
Query: 28 CTGCGG--IEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSP 85
C GC IE+ +T +D ERFG+ SPR D+ L TG VT + YE +P
Sbjct: 41 CGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAP 100
Query: 86 DPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVLDGIYKLMEMIE 145
D K +++G+C + GGI+ D Y+ D +P+DV+I GC P P A + G + +++
Sbjct: 101 DHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ 160
>dbj|BAA16121.1| (D90860) NADH DEHYDROGENASE I CHAIN B (EC 1.6.5.3) (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 2) (NUO2). [Escherichia coli]
Length = 151
Score = 81.9 bits (199), Expect = 5e-15
Identities = 43/111 (38%), Positives = 67/111 (59%), Gaps = 4/111 (3%)
Query: 34 IEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSPDPKYVLAH 93
+ +P MT R +++ + PSPRQ DL ++ G K I Y+ +PK+V++
Sbjct: 1 LRLPRCMTWRVLAQKYCV---PSPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISM 57
Query: 94 GSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVLDGIYKLMEMI 144
G+C +GG+Y D Y+ ++ +DK+IPVDV+I GC PRPEA + + L E I
Sbjct: 58 GACANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESI 107
>pir||C70850 probable oxidoreductase subunit - Mycobacterium tuberculosis
(strain H37RV) >gi|2808739|emb|CAA16263.1| (AL021428)
hypothetical protein Rv0082 [Mycobacterium tuberculosis]
Length = 159
Score = 81.1 bits (197), Expect = 9e-15
Identities = 42/107 (39%), Positives = 59/107 (54%), Gaps = 1/107 (0%)
Query: 28 CTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSPDP 87
C GC +E+ YD ERFG SP+ D L+TG VT + T E +P P
Sbjct: 45 CNGCE-VEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLEATPRP 103
Query: 88 KYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVL 134
+ V+A G C LN G++ D+Y + + + +PVDV IAGC P P A++
Sbjct: 104 RVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIM 150
>gb|AAB88386.1| (AF034788) formate hydrogenlyase subunit 7 [Methanococcus
maripaludis]
Length = 147
Score = 78.4 bits (190), Expect = 6e-14
Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 11/142 (7%)
Query: 17 ARKKSLWIVSFCTG-CGGIEMPPL---MTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
+RKK++ ++ TG C G ++ + ++ YD E++ + +PR+ D+ ++TG VT
Sbjct: 6 SRKKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKA 65
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIY-------WDSYNAIKHLDKYIPVDVFIAG 125
+ Y+ P+PK V+A G+C L GG+Y S ++ IPVD+ + G
Sbjct: 66 VSASLKKIYDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDIKVPG 125
Query: 126 CMPRPEAVLDGIYKLMEMIENG 147
C PRPE V+ GI K + I NG
Sbjct: 126 CPPRPEDVITGIVKALPKILNG 147
>pir||B64470 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii
>gi|1592007|gb|AAB99371.1| (U67576) formate
hydrogenlyase, subunit 7 [Methanococcus jannaschii]
Length = 151
Score = 77.6 bits (188), Expect = 1e-13
Identities = 46/143 (32%), Positives = 76/143 (52%), Gaps = 11/143 (7%)
Query: 17 ARKKSLWIVSFCTG-CGGIEMP---PLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPK 72
ARKK + ++ TG C ++ + + YD E++ + +PR+ D+ ++TG VT
Sbjct: 9 ARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKV 68
Query: 73 TLKRIIITYELSPDPKYVLAHGSCPLNGGIYWD-------SYNAIKHLDKYIPVDVFIAG 125
+ + YE P+PK V+A G+C L GG+Y + S ++ IPVDV + G
Sbjct: 69 VAESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPG 128
Query: 126 CMPRPEAVLDGIYKLMEMIENGE 148
C PRPE ++ GI K + + G+
Sbjct: 129 CAPRPEDIIAGIVKALPKVIEGK 151
>pir||E69032 formate hydrogenlyase, subunit 7 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622351|gb|AAB85728.1| (AE000891) formate
hydrogenlyase, subunit 7 [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 75.3 bits (182), Expect = 5e-13
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 28 CTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSPDP 87
C GC + + + +YD E++ + +PR+ D+ ++TG VT + + + Y P+P
Sbjct: 22 CNGCDIEIVNAVFSPKYDAEQYKIFLTWNPREADVLIVTGPVTKQNEEPLKAIYNAIPEP 81
Query: 88 KYVLAHGSCPLNGGIYWDSYNAIKH------LDKYIPVDVFIAGCMPRPEAVLDG 136
K V+A G+C L GG+Y + + I +DK IPVD + GC RPE VL G
Sbjct: 82 KAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAKVPGCAVRPEDVLAG 136
>emb|CAB52790.1| (AJ243656) hydrogenase small subunit [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 74.1 bits (179), Expect = 1e-12
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 28 CTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSPDP 87
C GC + +++ +YD E++ + +PR+ D+ ++TG VT + + Y P+P
Sbjct: 22 CNGCDIEIVNAVLSPKYDAEQYKIFLTWNPREADVLIVTGPVTKQNEGPLKEIYNAIPEP 81
Query: 88 KYVLAHGSCPLNGGIYWDSYNAIKH------LDKYIPVDVFIAGCMPRPEAVLDG 136
K V+A G+C L GG+Y + + I +DK IPVD + GC RPE VL G
Sbjct: 82 KAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAKVPGCAVRPEDVLAG 136
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.142 0.474
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89121391
Number of Sequences: 2977
Number of extensions: 4036172
Number of successful extensions: 7873
Number of sequences better than 1.0e-10: 96
Number of HSP's better than 0.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 7736
Number of HSP's gapped (non-prelim): 96
length of query: 195
length of database: 189,106,746
effective HSP length: 46
effective length of query: 149
effective length of database: 161,576,344
effective search space: 24074875256
effective search space used: 24074875256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)