BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0494 (nuoC) DE:NADH dehydrogenase I, subunit C, putative
         (174 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75114 probable NADH dehydrogenase I, chain C PAB0494 - Pyr...   362  1e-99
pir||C71019 probable NADH-ubiquinone oxidoreductase subunit - Py...   318  2e-86
pir||E72281 hypothetical protein TM1215 - Thermotoga maritima (s...    85  6e-16
gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, put...    73  2e-12
sp|Q9ZDH3|NUOC_RICPR NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINO...    71  1e-11
pir||A72621 probable NADH-plastoquinone oxidoreductase subunit J...    69  4e-11
gb|AAF65733.1|AF228525_3 (AF228525) F420H2 dehydrogenase subunit...    68  7e-11

>pir||B75114 probable NADH dehydrogenase I, chain C PAB0494 - Pyrococcus abyssi
           (strain Orsay) >gi|5458138|emb|CAB49627.1| (AJ248285)
           NADH dehydrogenase I, subunit C, putative [Pyrococcus
           abyssi]
           Length = 174
           
 Score =  362 bits (920), Expect = 1e-99
 Identities = 174/174 (100%), Positives = 174/174 (100%)

Query: 1   MTWEVGEELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHNFPLMLQISAV 60
           MTWEVGEELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHNFPLMLQISAV
Sbjct: 1   MTWEVGEELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHNFPLMLQISAV 60

Query: 61  DWLKEGEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFG 120
           DWLKEGEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFG
Sbjct: 61  DWLKEGEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFG 120

Query: 121 VYFEGNDKMEMPWILDDPERGLYPHRKDFNMLEYVKRKYKILDRFDENKDRYVI 174
           VYFEGNDKMEMPWILDDPERGLYPHRKDFNMLEYVKRKYKILDRFDENKDRYVI
Sbjct: 121 VYFEGNDKMEMPWILDDPERGLYPHRKDFNMLEYVKRKYKILDRFDENKDRYVI 174


>pir||C71019 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
           horikoshii >gi|3257872|dbj|BAA30555.1| (AP000006) 174aa
           long hypothetical NADH-ubiquinone oxidoreductase subunit
           [Pyrococcus horikoshii]
           Length = 174
           
 Score =  318 bits (807), Expect = 2e-86
 Identities = 148/174 (85%), Positives = 163/174 (93%)

Query: 1   MTWEVGEELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHNFPLMLQISAV 60
           M+W+VGEEL++ ILEKAPYAEG+VRRERRLEFKVP ERLR+FL +MKE NFPLMLQISAV
Sbjct: 1   MSWQVGEELVKKILEKAPYAEGKVRRERRLEFKVPAERLRDFLMLMKESNFPLMLQISAV 60

Query: 61  DWLKEGEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFG 120
           DW K+GEIELVYHL+N ELGTHAMVK RIPR+L+KAK+ TV DIYPAAETYERDVHDFFG
Sbjct: 61  DWPKDGEIELVYHLINPELGTHAMVKTRIPRELDKAKISTVSDIYPAAETYERDVHDFFG 120

Query: 121 VYFEGNDKMEMPWILDDPERGLYPHRKDFNMLEYVKRKYKILDRFDENKDRYVI 174
           VYFEGN++MEMPWILDDPERGLYPHRKDF MLEYVK+KYKILDRFDENK RYVI
Sbjct: 121 VYFEGNERMEMPWILDDPERGLYPHRKDFKMLEYVKKKYKILDRFDENKSRYVI 174


>pir||E72281 hypothetical protein TM1215 - Thermotoga maritima (strain MSB8)
           >gi|4981768|gb|AAD36290.1|AE001778_11 (AE001778) NADH
           dehydrogenase, 30 kDa subunit, putative [Thermotoga
           maritima]
           Length = 177
           
 Score = 84.7 bits (206), Expect = 6e-16
 Identities = 49/137 (35%), Positives = 79/137 (56%), Gaps = 12/137 (8%)

Query: 27  ERRLEFKVPVERLREFLSVMKEHNFPLMLQISAVDWLKEGEIELVYHLMNIELGTHAMVK 86
           ER ++  V  +R+   L  +K   +  +  ++ +DW+++ + ELVY L + + G   +V 
Sbjct: 26  EREVKLSVAPDRVIAVLETLKSLGYSHLSLMTCIDWIEDSQFELVYILFSWKDGGKFIVT 85

Query: 87  VRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFGVYFEGNDKMEMPWIL----DDPERGL 142
            RI R+    +  TV++I+P A  YER++H+FFGV F GN+ M+ P  L    D P    
Sbjct: 86  TRIDRN--NPQFVTVKEIWPVARFYEREIHEFFGVKFSGNEDMK-PLFLELWDDKP---- 138

Query: 143 YPHRKDFNMLEYVKRKY 159
            P RKDF+ LEY +RK+
Sbjct: 139 -PLRKDFDPLEYSRRKF 154


>gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
           [Archaeoglobus fulgidus] >gi|7483897|pir||D69478 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3), 39.7 kDa
           subunit homolog - Archaeoglobus fulgidus
           >gi|2648716|gb|AAB89421.1| (AE000976) F420H2:quinone
           oxidoreductase, 39.7 kDa subunit, putative
           [Archaeoglobus fulgidus]
           Length = 353
           
 Score = 73.0 bits (176), Expect = 2e-12
 Identities = 44/155 (28%), Positives = 78/155 (49%), Gaps = 3/155 (1%)

Query: 3   WEVGEELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHNFPLMLQISAVDW 62
           WE G++L+  I  K       +  + R+  KV  + +      ++E  F  +  ++ +D 
Sbjct: 197 WEFGQKLVEEIKAKVEAKSVTITGKNRIAVKVESDYIPRAAMRLREMGFDHVKNVNVIDV 256

Query: 63  LKEGEIELVYHLMNIELGTHAMVKVRIPRDL--EKAKVPTVRDIYPAAETYERDVHDFFG 120
             E +  + YH  +  +     V V +  D+  E  +V ++  ++P+A+  ER++HDFFG
Sbjct: 257 PNEDKFIVEYHFSSYSVKELMPVIVNVFADIPRENPRVKSLASMFPSADYMEREMHDFFG 316

Query: 121 VYFEGNDKMEMPWILDDPERGLYPHRKDFNMLEYV 155
           V FEGN  M   ++L  P+   +P RKDF + E V
Sbjct: 317 VIFEGNPWMGRKFLL-APDAPEFPLRKDFKLEEEV 350


>sp|Q9ZDH3|NUOC_RICPR NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           C) >gi|7467892|pir||E71692 NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) I chain C RP355 - Rickettsia
           prowazekii >gi|3860915|emb|CAA14815.1| (AJ235271) NADH
           DEHYDROGENASE I CHAIN C (nuoC) [Rickettsia prowazekii]
           Length = 197
           
 Score = 70.6 bits (170), Expect = 1e-11
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 9/157 (5%)

Query: 7   EELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHN---FPLMLQISAVDW- 62
           ++L+  +  K      +V  +  L +K+    L  FL  +KE     F ++  +  VD+ 
Sbjct: 4   DKLIEKLAAKFRIVITKVAVKDHLAYKIEPHFLLPFLKALKESEELRFTVLTDLFGVDFP 63

Query: 63  LKEGEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFGVY 122
            KE   E+VY+L++++L  + ++K  I    EK  +P+   I  AA  YE +V+D +GV 
Sbjct: 64  KKEKRFEVVYNLLSLKLNKNLIIKTHIS---EKESIPSAMQILSAAYWYELEVYDMYGVN 120

Query: 123 FEGNDKMEMPWILDDPERGLYPHRKDFNMLEYVKRKY 159
           F GN+      IL D +   +P RKDF +  Y + KY
Sbjct: 121 FNGNNDKRR--ILTDYDFEGHPLRKDFPLTGYTQVKY 155


>pir||A72621 probable NADH-plastoquinone oxidoreductase subunit J APE1426 -
           Aeropyrum pernix (strain K1) >gi|5105109|dbj|BAA80423.1|
           (AP000061) 189aa long hypothetical NADH-plastoquinone
           oxidoreductase subunit J [Aeropyrum pernix]
           Length = 189
           
 Score = 68.7 bits (165), Expect = 4e-11
 Identities = 42/128 (32%), Positives = 72/128 (55%), Gaps = 6/128 (4%)

Query: 30  LEFKVPVERLREFLSVMKEHNFPLMLQISAVDWLKEGEIELVYHLMNIE----LGTHAMV 85
           ++F V V+ L      +K   F  ++ I+ +D+LKE +  +VYH+ +       G    +
Sbjct: 50  VDFIVSVDDLVRAAEALKTVGFDHVVSITTIDYLKEKKFRVVYHVSSYLDAALKGAIVGL 109

Query: 86  KVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFGVYFEGNDKMEMPWILDDPERGLYPH 145
            V +PR +EK  +P++  I+ +AE  ER+V++FFG+ FEG+  +  P++L  P     P 
Sbjct: 110 GVELPR-VEKPSIPSLSQIWISAEFQEREVYEFFGIEFEGHPDLR-PFLLTPPVAEKRPL 167

Query: 146 RKDFNMLE 153
           RKDF + E
Sbjct: 168 RKDFVVRE 175


>gb|AAF65733.1|AF228525_3 (AF228525) F420H2 dehydrogenase subunit FpoC [Methanosarcina mazei]
           Length = 158
           
 Score = 67.9 bits (163), Expect = 7e-11
 Identities = 40/144 (27%), Positives = 77/144 (52%), Gaps = 6/144 (4%)

Query: 9   LLRSILEKAPYA--EGRVRRERRLEFKVPVERLREFLSVMKEH-NFPLMLQISAVDWLKE 65
           ++ S+  K P A  E  +    R+   V  ++ +E    +K    F  +  +S VD+ + 
Sbjct: 6   IIESLTGKFPEAISEAGIESPIRIRAYVDKDKAKEVCEYLKGSLQFDHLCSVSGVDYPQR 65

Query: 66  GEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFGVYFEG 125
            E+E VYH+ + +     M+K R+PRD    ++ +V  +Y  A  YER+ ++ +G++F+ 
Sbjct: 66  DELEAVYHIASYDHPVVLMLKARLPRD--SPEIESVVSVYWNANWYERETYELYGIFFKN 123

Query: 126 NDKMEMPWILDDPERGLYPHRKDF 149
           + +++ P +L D   G +P RKD+
Sbjct: 124 HPELK-PLVLPDDMLGEWPLRKDY 146


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.142    0.426 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67390525
Number of Sequences: 2977
Number of extensions: 2742547
Number of successful extensions: 5748
Number of sequences better than 1.0e-10: 7
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5741
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 189,106,746
effective HSP length: 51
effective length of query: 123
effective length of database: 158,583,909
effective search space: 19505820807
effective search space used: 19505820807
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)