BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0494 (nuoC) DE:NADH dehydrogenase I, subunit C, putative
(174 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75114 probable NADH dehydrogenase I, chain C PAB0494 - Pyr... 362 1e-99
pir||C71019 probable NADH-ubiquinone oxidoreductase subunit - Py... 318 2e-86
pir||E72281 hypothetical protein TM1215 - Thermotoga maritima (s... 85 6e-16
gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, put... 73 2e-12
sp|Q9ZDH3|NUOC_RICPR NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINO... 71 1e-11
pir||A72621 probable NADH-plastoquinone oxidoreductase subunit J... 69 4e-11
gb|AAF65733.1|AF228525_3 (AF228525) F420H2 dehydrogenase subunit... 68 7e-11
>pir||B75114 probable NADH dehydrogenase I, chain C PAB0494 - Pyrococcus abyssi
(strain Orsay) >gi|5458138|emb|CAB49627.1| (AJ248285)
NADH dehydrogenase I, subunit C, putative [Pyrococcus
abyssi]
Length = 174
Score = 362 bits (920), Expect = 1e-99
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MTWEVGEELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHNFPLMLQISAV 60
MTWEVGEELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHNFPLMLQISAV
Sbjct: 1 MTWEVGEELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHNFPLMLQISAV 60
Query: 61 DWLKEGEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFG 120
DWLKEGEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFG
Sbjct: 61 DWLKEGEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFG 120
Query: 121 VYFEGNDKMEMPWILDDPERGLYPHRKDFNMLEYVKRKYKILDRFDENKDRYVI 174
VYFEGNDKMEMPWILDDPERGLYPHRKDFNMLEYVKRKYKILDRFDENKDRYVI
Sbjct: 121 VYFEGNDKMEMPWILDDPERGLYPHRKDFNMLEYVKRKYKILDRFDENKDRYVI 174
>pir||C71019 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257872|dbj|BAA30555.1| (AP000006) 174aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 174
Score = 318 bits (807), Expect = 2e-86
Identities = 148/174 (85%), Positives = 163/174 (93%)
Query: 1 MTWEVGEELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHNFPLMLQISAV 60
M+W+VGEEL++ ILEKAPYAEG+VRRERRLEFKVP ERLR+FL +MKE NFPLMLQISAV
Sbjct: 1 MSWQVGEELVKKILEKAPYAEGKVRRERRLEFKVPAERLRDFLMLMKESNFPLMLQISAV 60
Query: 61 DWLKEGEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFG 120
DW K+GEIELVYHL+N ELGTHAMVK RIPR+L+KAK+ TV DIYPAAETYERDVHDFFG
Sbjct: 61 DWPKDGEIELVYHLINPELGTHAMVKTRIPRELDKAKISTVSDIYPAAETYERDVHDFFG 120
Query: 121 VYFEGNDKMEMPWILDDPERGLYPHRKDFNMLEYVKRKYKILDRFDENKDRYVI 174
VYFEGN++MEMPWILDDPERGLYPHRKDF MLEYVK+KYKILDRFDENK RYVI
Sbjct: 121 VYFEGNERMEMPWILDDPERGLYPHRKDFKMLEYVKKKYKILDRFDENKSRYVI 174
>pir||E72281 hypothetical protein TM1215 - Thermotoga maritima (strain MSB8)
>gi|4981768|gb|AAD36290.1|AE001778_11 (AE001778) NADH
dehydrogenase, 30 kDa subunit, putative [Thermotoga
maritima]
Length = 177
Score = 84.7 bits (206), Expect = 6e-16
Identities = 49/137 (35%), Positives = 79/137 (56%), Gaps = 12/137 (8%)
Query: 27 ERRLEFKVPVERLREFLSVMKEHNFPLMLQISAVDWLKEGEIELVYHLMNIELGTHAMVK 86
ER ++ V +R+ L +K + + ++ +DW+++ + ELVY L + + G +V
Sbjct: 26 EREVKLSVAPDRVIAVLETLKSLGYSHLSLMTCIDWIEDSQFELVYILFSWKDGGKFIVT 85
Query: 87 VRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFGVYFEGNDKMEMPWIL----DDPERGL 142
RI R+ + TV++I+P A YER++H+FFGV F GN+ M+ P L D P
Sbjct: 86 TRIDRN--NPQFVTVKEIWPVARFYEREIHEFFGVKFSGNEDMK-PLFLELWDDKP---- 138
Query: 143 YPHRKDFNMLEYVKRKY 159
P RKDF+ LEY +RK+
Sbjct: 139 -PLRKDFDPLEYSRRKF 154
>gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus] >gi|7483897|pir||D69478 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3), 39.7 kDa
subunit homolog - Archaeoglobus fulgidus
>gi|2648716|gb|AAB89421.1| (AE000976) F420H2:quinone
oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus]
Length = 353
Score = 73.0 bits (176), Expect = 2e-12
Identities = 44/155 (28%), Positives = 78/155 (49%), Gaps = 3/155 (1%)
Query: 3 WEVGEELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHNFPLMLQISAVDW 62
WE G++L+ I K + + R+ KV + + ++E F + ++ +D
Sbjct: 197 WEFGQKLVEEIKAKVEAKSVTITGKNRIAVKVESDYIPRAAMRLREMGFDHVKNVNVIDV 256
Query: 63 LKEGEIELVYHLMNIELGTHAMVKVRIPRDL--EKAKVPTVRDIYPAAETYERDVHDFFG 120
E + + YH + + V V + D+ E +V ++ ++P+A+ ER++HDFFG
Sbjct: 257 PNEDKFIVEYHFSSYSVKELMPVIVNVFADIPRENPRVKSLASMFPSADYMEREMHDFFG 316
Query: 121 VYFEGNDKMEMPWILDDPERGLYPHRKDFNMLEYV 155
V FEGN M ++L P+ +P RKDF + E V
Sbjct: 317 VIFEGNPWMGRKFLL-APDAPEFPLRKDFKLEEEV 350
>sp|Q9ZDH3|NUOC_RICPR NADH DEHYDROGENASE I CHAIN C (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
C) >gi|7467892|pir||E71692 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain C RP355 - Rickettsia
prowazekii >gi|3860915|emb|CAA14815.1| (AJ235271) NADH
DEHYDROGENASE I CHAIN C (nuoC) [Rickettsia prowazekii]
Length = 197
Score = 70.6 bits (170), Expect = 1e-11
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 7 EELLRSILEKAPYAEGRVRRERRLEFKVPVERLREFLSVMKEHN---FPLMLQISAVDW- 62
++L+ + K +V + L +K+ L FL +KE F ++ + VD+
Sbjct: 4 DKLIEKLAAKFRIVITKVAVKDHLAYKIEPHFLLPFLKALKESEELRFTVLTDLFGVDFP 63
Query: 63 LKEGEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFGVY 122
KE E+VY+L++++L + ++K I EK +P+ I AA YE +V+D +GV
Sbjct: 64 KKEKRFEVVYNLLSLKLNKNLIIKTHIS---EKESIPSAMQILSAAYWYELEVYDMYGVN 120
Query: 123 FEGNDKMEMPWILDDPERGLYPHRKDFNMLEYVKRKY 159
F GN+ IL D + +P RKDF + Y + KY
Sbjct: 121 FNGNNDKRR--ILTDYDFEGHPLRKDFPLTGYTQVKY 155
>pir||A72621 probable NADH-plastoquinone oxidoreductase subunit J APE1426 -
Aeropyrum pernix (strain K1) >gi|5105109|dbj|BAA80423.1|
(AP000061) 189aa long hypothetical NADH-plastoquinone
oxidoreductase subunit J [Aeropyrum pernix]
Length = 189
Score = 68.7 bits (165), Expect = 4e-11
Identities = 42/128 (32%), Positives = 72/128 (55%), Gaps = 6/128 (4%)
Query: 30 LEFKVPVERLREFLSVMKEHNFPLMLQISAVDWLKEGEIELVYHLMNIE----LGTHAMV 85
++F V V+ L +K F ++ I+ +D+LKE + +VYH+ + G +
Sbjct: 50 VDFIVSVDDLVRAAEALKTVGFDHVVSITTIDYLKEKKFRVVYHVSSYLDAALKGAIVGL 109
Query: 86 KVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFGVYFEGNDKMEMPWILDDPERGLYPH 145
V +PR +EK +P++ I+ +AE ER+V++FFG+ FEG+ + P++L P P
Sbjct: 110 GVELPR-VEKPSIPSLSQIWISAEFQEREVYEFFGIEFEGHPDLR-PFLLTPPVAEKRPL 167
Query: 146 RKDFNMLE 153
RKDF + E
Sbjct: 168 RKDFVVRE 175
>gb|AAF65733.1|AF228525_3 (AF228525) F420H2 dehydrogenase subunit FpoC [Methanosarcina mazei]
Length = 158
Score = 67.9 bits (163), Expect = 7e-11
Identities = 40/144 (27%), Positives = 77/144 (52%), Gaps = 6/144 (4%)
Query: 9 LLRSILEKAPYA--EGRVRRERRLEFKVPVERLREFLSVMKEH-NFPLMLQISAVDWLKE 65
++ S+ K P A E + R+ V ++ +E +K F + +S VD+ +
Sbjct: 6 IIESLTGKFPEAISEAGIESPIRIRAYVDKDKAKEVCEYLKGSLQFDHLCSVSGVDYPQR 65
Query: 66 GEIELVYHLMNIELGTHAMVKVRIPRDLEKAKVPTVRDIYPAAETYERDVHDFFGVYFEG 125
E+E VYH+ + + M+K R+PRD ++ +V +Y A YER+ ++ +G++F+
Sbjct: 66 DELEAVYHIASYDHPVVLMLKARLPRD--SPEIESVVSVYWNANWYERETYELYGIFFKN 123
Query: 126 NDKMEMPWILDDPERGLYPHRKDF 149
+ +++ P +L D G +P RKD+
Sbjct: 124 HPELK-PLVLPDDMLGEWPLRKDY 146
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67390525
Number of Sequences: 2977
Number of extensions: 2742547
Number of successful extensions: 5748
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5741
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 189,106,746
effective HSP length: 51
effective length of query: 123
effective length of database: 158,583,909
effective search space: 19505820807
effective search space used: 19505820807
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)