BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0495 (nuoD) DE:NADH dehydrognease I, subunit D (nuoD)
(394 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75114 NADH dehydrognease I, chain D (nuod) PAB0495 - Pyroc... 808 0.0
pir||B71019 probable NADH-ubiquinone oxidoreductase subunit - Py... 772 0.0
pir||F72281 hypothetical protein TM1216 - Thermotoga maritima (s... 357 1e-97
pir||E72620 probable NADH dehydrogenase (ubiquinone) chain 7 APE... 260 2e-68
gb|AAK40659.1| NADH dehydrogenase subunit D (NuoD) [Sulfolobus ... 247 2e-64
gb|AAF65734.1|AF228525_4 (AF228525) F420H2 dehydrogenase subunit... 240 2e-62
sp|P22142|NUCM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 233 3e-60
sp|P56908|NUD2_RHIME NADH DEHYDROGENASE I CHAIN D 2 (NADH-UBIQUI... 231 1e-59
sp|Q9ZDH4|NUOD_RICPR NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 227 2e-58
gi|11467085 NADH dehydrogenase, subunit 7 [Acanthamoeba castella... 221 1e-56
emb|CAC12096.1| (AL445066) probable NADH dehydrogenase, chain D ... 220 2e-56
sp|Q56220|NQO4_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NAD... 220 2e-56
pir||F82821 NADH-ubiquinone oxidoreductase, NQO4 subunit XF0308 ... 219 5e-56
sp|P29916|NQO4_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NAD... 218 8e-56
pir||B81222 NADH dehydrogenase I, D chain NMB0244 [imported] - N... 217 1e-55
emb|CAB65521.1| (AJ249783) NUCM protein [Yarrowia lipolytica] 216 4e-55
gi|11466533 NADH dehydrogenase, subunit 7 [Reclinomonas american... 215 5e-55
pir||D81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 215 5e-55
gb|AAF56465.1| (AE003751) CG11913 gene product [Drosophila melan... 214 1e-54
gi|9695385 NADH dehydrogenase subunit 7 [Phytophthora infestans]... 214 2e-54
pir||T34621 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain n... 212 6e-54
gi|11466595 NADH dehydrogenase subunit 7 [Rhodomonas salina] >gi... 209 5e-53
gi|11465869 NADH dehydrogenase subunit 7 [Ochromonas danica] >gi... 208 9e-53
gi|11466758 ORF392 [Marchantia polymorpha] >gi|128834|sp|P12131|... 208 1e-52
sp|Q9RU89|NUOD_DEIRA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 208 1e-52
gi|11466310 NADH dehydrogenase subunit 7 [Cafeteria roenbergensi... 206 3e-52
sp|P56907|NUD1_RHIME NADH DEHYDROGENASE I CHAIN D 1 (NADH-UBIQUI... 206 4e-52
emb|CAB67226.1| (AJ271079) NADH-plastoquinone oxidoreductase 49 ... 205 6e-52
gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 (49kD)... 204 1e-51
sp|O75306|NUCM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 204 1e-51
pir||G64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 203 3e-51
pir||E71838 nadh oxidoreductase I - Helicobacter pylori (strain ... 203 4e-51
sp|P17694|NUCM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 203 4e-51
sp|P33600|NUOD_ECOLI NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 203 4e-51
emb|CAA32523.1| (X14338) NADH:ubiquinone oxidoreductase (428 AA)... 203 4e-51
sp|P57254|NUCD_BUCAI NADH DEHYDROGENASE I CHAIN C/D (NADH-UBIQUI... 202 5e-51
gi|11466021 NADH dehydrogenase 49kD subunit [Nicotiana tabacum] ... 202 7e-51
gi|11466215 NADH dehydrogenase subunit 7 [Naegleria gruberi] >gi... 201 9e-51
pir||D83316 NADH dehydrogenase I chain C,D PA2639 [imported] - P... 201 1e-50
sp|Q9PM99|NUOD_CAMJE NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 201 2e-50
emb|CAA48363.1| (X68301) NADH dehydrogenase I, subunit nuoD [Esc... 201 2e-50
pir||D65000 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I, chai... 200 2e-50
dbj|BAA16115.1| (D90859) NADH DEHYDROGENASE I CHAIN D (EC 1.6.5.... 200 2e-50
gi|11467261 NADH dehydrogenase 49KDa protein [Zea mays] >gi|1288... 200 3e-50
sp|Q9TC96|NUCM_NEPOL NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 200 3e-50
pir||S46437 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7... 199 3e-50
sp|P95178|NUOD_MYCTU NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 199 3e-50
gi|11499418 F420H2:quinone oxidoreductase, 45 kDa subunit (nuoD)... 199 5e-50
sp|O98691|NUCC_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KDA SU... 199 5e-50
pir||E69478 coenzyme F420--quinone oxidoreductase (EC 1.6.5.-) 4... 199 5e-50
gb|AAG23656.1|AF288091_1 (AF288091) NADH dehydrogenase subunit 7... 199 6e-50
sp|Q93873|NUCM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 49 ... 198 8e-50
gi|11466444 49 kDa subunit of NADH-plastoquinone [Mesostigma vir... 198 8e-50
gb|AAF97800.1|AF281148_4 (AF281148) NADH dehydrogenase I subunit... 198 1e-49
dbj|BAB18862.1| (AB035479) NADH dehydrogenase [Physcomitrella pa... 198 1e-49
gb|AAF59336.1| (AE003843) CG1970 gene product [Drosophila melano... 198 1e-49
pir||T34389 hypothetical protein T26A5.3 - Caenorhabditis elegan... 197 2e-49
pir||S57332 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7... 196 3e-49
gi|11466853 NADH dehydrogenase 49kDa protein [Oryza sativa] >gi|... 196 4e-49
gi|11497587 NADH dehydrogenase 49kD subunit [Spinacia oleracea] ... 195 9e-49
pir||F70349 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 193 3e-48
gi|7525091 NADH dehydrogenase 49KDa protein [Arabidopsis thalian... 193 3e-48
sp|O07310|NUOD_RHOCA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 192 6e-48
gi|9838441 NADH dehydrogenase subunit 7 [Beta vulgaris] >gi|9087... 192 8e-48
gi|11467869 49 kDa subunit of NADH-plastoquinone oxidoreductase ... 191 1e-47
pir||T36080 probable NADH dehydrogenase - Streptomyces coelicolo... 191 1e-47
gi|11497462 NADH dehydrogenase (ubiquinone), subunit 7 [Protothe... 190 3e-47
sp|P27724|NUCC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KD SUB... 189 4e-47
pir||S38313 NADH dehydrogenase I chain nuoD - Escherichia coli 189 5e-47
gi|11466472 NADH dehydrogenase subunit 7 [Chrysodidymus synuroid... 189 5e-47
sp|Q37720|NUCM_PYLLI NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 187 2e-46
sp|P93306|NUCM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 180 2e-44
gi|7524987 NADH dehydrogenase subunit 7 [Dictyostelium discoideu... 180 3e-44
sp|Q36450|NUCM_NICSY NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 177 2e-43
emb|CAA52952.1| (X75036) NADH dehydrogenase [Triticum aestivum] 175 8e-43
pir||D70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 175 8e-43
pir||E75060 hydrogenase-4 component g (EC 1.-.-.-) PAB1394 - Pyr... 175 1e-42
gb|AAG19139.1| (AE005011) NADH dehydrogenase/oxidoreductase; Ndh... 171 2e-41
emb|CAA76121.1| (Y16191) echE [Methanosarcina barkeri] 169 5e-41
sp|P31895|COOH_RHORU CARBON MONOXIDE-INDUCED HYDROGENASE >gi|112... 162 5e-39
dbj|BAB08104.1| (AB039844) NADH dehydrogenase subunit 7 [Physaru... 160 2e-38
sp|P15689|NUCM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 148 1e-34
gi|8928603 NADH dehydrogenase subunit 7 [Paramecium aurelia] 148 1e-34
pir||B75115 co-induced hydrogenase related, chain H PAB1892 - Py... 141 1e-32
pir||H71017 probable NADH-ubiquinone oxidoreductase subunit - Py... 138 1e-31
sp|P16431|HYCE_ECOLI FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (... 136 6e-31
gi|11466264 NADH dehydrogenase subunit 7 [Tetrahymena pyriformis... 125 7e-28
sp|P77329|HYFG_ECOLI HYDROGENASE-4 COMPONENT G >gi|7432639|pir||... 122 1e-26
dbj|BAA16375.1| (D90877) FORMATE HYDROGENLYASE SUBUNIT 5 PRECURS... 122 1e-26
pir||D69032 formate hydrogenlyase, subunit 5 - Methanobacterium ... 118 9e-26
emb|CAB52791.1| (AJ243656) hydrogenase large subunit [Methanobac... 115 1e-24
emb|CAB52770.1| (AJ243655) hydrogenase large subunit [Methanobac... 113 3e-24
pir||F69151 formate hydrogenlyase, subunit 5 - Methanobacterium ... 109 4e-23
pir||C64364 formate hydrogenlyase, subunit 5 - Methanococcus jan... 104 1e-21
pir||A42957 carbon monoxide-induced hydrogenase - Rhodospirillum... 101 1e-20
pir||B64428 formate hydrogenlyase, subunit 5 - Methanococcus jan... 100 3e-20
pir||G70749 probable hycE protein - Mycobacterium tuberculosis (... 98 2e-19
gb|AAA74515.1| (L07537) NADH dehydrogenase subunit 7 [Leishmania... 76 9e-13
sp|P21301|NUCM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 74 3e-12
gi|9838442 orf155b [Beta vulgaris] >gi|9087304|dbj|BAA99448.1| (... 73 4e-12
gb|AAK41286.1| Formate hydrogenlyase subunit 5 (hycE) [Sulfolobu... 71 2e-11
dbj|BAA73742.1| (AB020539) ORFI, similar to NADH dehydrogenase [... 71 2e-11
>pir||C75114 NADH dehydrognease I, chain D (nuod) PAB0495 - Pyrococcus abyssi
(strain Orsay) >gi|5458139|emb|CAB49628.1| (AJ248285)
NADH dehydrognease I, subunit D (nuoD) [Pyrococcus
abyssi]
Length = 394
Score = 808 bits (2064), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MILMVTQEELIREARRNGMELYPIEKDTYELFFGPQHMATENFSIILKMDGNRVVKAIAN 60
MILMVTQEELIREARRNGMELYPIEKDTYELFFGPQHMATENFSIILKMDGNRVVKAIAN
Sbjct: 1 MILMVTQEELIREARRNGMELYPIEKDTYELFFGPQHMATENFSIILKMDGNRVVKAIAN 60
Query: 61 PGFLHRGFEKLAEYRPWYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRT 120
PGFLHRGFEKLAEYRPWYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRT
Sbjct: 61 PGFLHRGFEKLAEYRPWYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRT 120
Query: 121 TVLEMARVSAYLFWIMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGV 180
TVLEMARVSAYLFWIMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGV
Sbjct: 121 TVLEMARVSAYLFWIMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGV 180
Query: 181 RRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGP 240
RRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGP
Sbjct: 181 RRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGP 240
Query: 241 NLRATGVAYDVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMG 300
NLRATGVAYDVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMG
Sbjct: 241 NLRATGVAYDVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMG 300
Query: 301 PPSGPYKVEDPRLKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIA 360
PPSGPYKVEDPRLKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIA
Sbjct: 301 PPSGPYKVEDPRLKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIA 360
Query: 361 HGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
HGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR
Sbjct: 361 HGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
>pir||B71019 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257871|dbj|BAA30554.1| (AP000006) 394aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 394
Score = 772 bits (1973), Expect = 0.0
Identities = 368/394 (93%), Positives = 389/394 (98%)
Query: 1 MILMVTQEELIREARRNGMELYPIEKDTYELFFGPQHMATENFSIILKMDGNRVVKAIAN 60
MI+MVTQEELIREAR+NGMELYPI +DTYELFFGPQHMATENFSIILKMDGNRVVKAIAN
Sbjct: 1 MIIMVTQEELIREARQNGMELYPINRDTYELFFGPQHMATENFSIILKMDGNRVVKAIAN 60
Query: 61 PGFLHRGFEKLAEYRPWYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRT 120
PGFLHRGFEKLAE+RPWYTNIALLLRICVPESDVPEAIYS+AVDEIIGWEVPERAQWIRT
Sbjct: 61 PGFLHRGFEKLAEFRPWYTNIALLLRICVPESDVPEAIYSMAVDEIIGWEVPERAQWIRT 120
Query: 121 TVLEMARVSAYLFWIMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGV 180
VLE+ARVSAYLFWIMGLSFKLGVYTAGQWAAAYRER+MR+FEELTGARVYHI+TIPGGV
Sbjct: 121 LVLELARVSAYLFWIMGLSFKLGVYTAGQWAAAYRERIMRIFEELTGARVYHIFTIPGGV 180
Query: 181 RRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGP 240
RRDIPGDKWLRQ++DTVEYI+SKLPDFDN++FENYITYRRMEGIGVMDKKFALAEGVTGP
Sbjct: 181 RRDIPGDKWLRQVRDTVEYIRSKLPDFDNILFENYITYRRMEGIGVMDKKFALAEGVTGP 240
Query: 241 NLRATGVAYDVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMG 300
NLRATGVAYDVRKDDPYL Y E++FEVPTL+EGDALARALVRRYELEQDLYI+EQLLEMG
Sbjct: 241 NLRATGVAYDVRKDDPYLFYSEVEFEVPTLKEGDALARALVRRYELEQDLYIIEQLLEMG 300
Query: 301 PPSGPYKVEDPRLKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIA 360
PPSGPYKVEDPRLKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDG +KPYRVHVRGPSIA
Sbjct: 301 PPSGPYKVEDPRLKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGGNKPYRVHVRGPSIA 360
Query: 361 HGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
HGIRVLE+LLVGARIADVP+ILMSLDNCPPDIDR
Sbjct: 361 HGIRVLEKLLVGARIADVPIILMSLDNCPPDIDR 394
>pir||F72281 hypothetical protein TM1216 - Thermotoga maritima (strain MSB8)
>gi|4981769|gb|AAD36291.1|AE001778_12 (AE001778) NADH
dehydrogenase, 49 kDa subunit, putative [Thermotoga
maritima]
Length = 368
Score = 357 bits (907), Expect = 1e-97
Identities = 180/366 (49%), Positives = 253/366 (68%), Gaps = 3/366 (0%)
Query: 30 ELFFGPQHMATE-NFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRIC 88
+LFFGP H NFS+ + ++G+ V KA PGFLHRGFEKL E R WY+NI+L+ RIC
Sbjct: 5 KLFFGPNHPGMHGNFSVHMYVEGDIVKKARPVPGFLHRGFEKLMERRYWYSNISLIPRIC 64
Query: 89 VPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAG 148
VPE D+ E Y++A+++I EVPERAQWIR VLE+AR++ +++ + G+ LG+YTA
Sbjct: 65 VPEPDINEICYAMAIEKIAKVEVPERAQWIRMIVLELARIANHIWTVGGIGGPLGLYTAS 124
Query: 149 QWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFD 208
W A R+R++ +FE L+GARVYH+Y IPGGVR+++ K + T++YI+S+LPD++
Sbjct: 125 HWGVADRDRILDIFEALSGARVYHMYIIPGGVRKNMT-PKIEEMIWKTLDYIESRLPDYE 183
Query: 209 NLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVP 268
NL+F+N I + R+ G ++ ++ A+ GVTG LRATGV YD+RK DPYL Y ++FEVP
Sbjct: 184 NLIFKNRIVHSRLRGRLILTREQAVEMGVTGVGLRATGVEYDIRKVDPYLFYDRVEFEVP 243
Query: 269 TLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGDAFA 328
T +GDA +R ++ E+ Q + I+ Q LE P + V R L R VP G A+A
Sbjct: 244 TATDGDAFSRVYLKFKEIPQSIKIIRQALEKMPQADRVNVPIGRGNGLRRI-VPKGMAYA 302
Query: 329 HVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNC 388
HVEST+G++G +VVSDG +KPYRV VRG S G+ +E+ L G RI DVP+ L ++D C
Sbjct: 303 HVESTRGEYGFFVVSDGKNKPYRVAVRGASYPQGLYGIEKYLPGTRIEDVPIWLATMDVC 362
Query: 389 PPDIDR 394
P+IDR
Sbjct: 363 APEIDR 368
>pir||E72620 probable NADH dehydrogenase (ubiquinone) chain 7 APE1422 -
Aeropyrum pernix (strain K1) >gi|5105105|dbj|BAA80419.1|
(AP000061) 414aa long hypothetical NADH dehydrogenase
(ubiquinone) chain 7 [Aeropyrum pernix]
Length = 414
Score = 260 bits (657), Expect = 2e-68
Identities = 154/401 (38%), Positives = 221/401 (54%), Gaps = 26/401 (6%)
Query: 18 GMELYP---IEKDTYELFFGPQHMATENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEY 74
G+++ P + KD YE++ GPQH + + I +++DG+ +V+A + G++HR EKL E
Sbjct: 16 GLKIIPSKKVAKDLYEIYIGPQHPGSGHMRITIRVDGDIIVEADPDIGYVHRTMEKLGEI 75
Query: 75 RPWYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFW 134
R W I L R+ + ++ Y LAV++++G E P RA+++RT + E+ R+ A+L+
Sbjct: 76 RGWIKPIPLFERMAIHDACNITLPYVLAVEKLMGVEPPLRAKYLRTLLCEINRIGAHLYG 135
Query: 135 IMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLK 194
LG T WA RE + L E LTGAR+ H Y IPGG RRDIP D + +
Sbjct: 136 FAIFGVFLGHSTMYMWAMGDREVFIELAEALTGARLTHSYPIPGGARRDIPAD-FPDMAR 194
Query: 195 DTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKD 254
V Y++ +L ++ + N + R+EG+GV+ KK A G+ GPN R +G+ YDVR
Sbjct: 195 RAVRYMRKRLDEYAKIFLNNPVIRSRLEGVGVIPKKAAAEMGIVGPNARGSGIDYDVRLV 254
Query: 255 DPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLE---------------- 298
PY YPE+DFEVP EGDALAR VR E++Q L I+EQ +E
Sbjct: 255 HPYDAYPEIDFEVPVFEEGDALARTYVRVEEIKQSLRIIEQAVEWLEKHPREPIVDKYLY 314
Query: 299 -MGPPSGPYKVE-DPRLKNLP---RFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVH 353
PP +E + R K LP KVP G A E+ +G+ YV SDG PYRV
Sbjct: 315 GKYPPLHKKVLEAEGRAKLLPTVAAMKVPPGRAIGRAETGRGETVYYVESDGGVNPYRVR 374
Query: 354 VRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
+ S A + + +L G R+ D+P I SLD PP+ DR
Sbjct: 375 IVTAS-ARNVIAFKYVLPGHRVMDIPAIYGSLDYFPPEADR 414
>gb|AAK40659.1| NADH dehydrogenase subunit D (NuoD) [Sulfolobus solfataricus]
Length = 410
Score = 247 bits (624), Expect = 2e-64
Identities = 154/409 (37%), Positives = 231/409 (55%), Gaps = 29/409 (7%)
Query: 7 QEELIREARRNGMELYPIEKDTYELFFGPQHMATENFSIILKMDGNRVVKAIANPGFLHR 66
QE+L+ A +E P++ EL GPQH + + I +K++G+ + + G++HR
Sbjct: 10 QEQLLA-ATGMSVEFIPVQG---ELNVGPQHPGSGHMRIFVKLNGDIIEDVDLDVGYVHR 65
Query: 67 GFEKLAEYRPWYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMA 126
EKL+E R + I L+ R + +S Y +AV++I+G +VPERAQ++R+ E+
Sbjct: 66 AVEKLSENRNYMHLIPLVERPAILDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVN 125
Query: 127 RVSAYLFWIMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPG 186
R++++L+ + L+ LG T W RE + + E LTGARV + Y IPGGVR+DI
Sbjct: 126 RIASHLYGLGILAIFLGHSTGFMWGFGDREVWVTILEALTGARVTNSYVIPGGVRKDITQ 185
Query: 187 DKWLRQLKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATG 246
+ +K + Y + +L D+ + F N R+E +GVM ++ A+ G GPNLRA+G
Sbjct: 186 EIKEMTIK-AIAYQRKRLEDWKKIFFYNPSIRARLENVGVMSRENAIKWGAVGPNLRASG 244
Query: 247 VAYDVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPY 306
V YDVRK +PY Y +LDFE+P +EGD LAR LVR E+EQ + ILEQ+++ P
Sbjct: 245 VYYDVRKIEPYGAYDKLDFEIPVYKEGDGLARGLVRLEEIEQSMRILEQIIKNIPEGN-- 302
Query: 307 KVEDPRLKNLP---------------------RFKVPAGDAFAHVESTKGDFGAYVVSDG 345
+ D K +P F+ P G+A + VE+ +G+ YVVSDG
Sbjct: 303 ILSDRFFKQIPPIRLKKYWETYRRIVLPGYYASFRPPKGEAISRVEAGRGELAYYVVSDG 362
Query: 346 SHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
S KPYR+ + PS I V ++L G+R AD+ I SLD PP+ DR
Sbjct: 363 SPKPYRLRMITPSY-RLIYVFKELCKGSRYADLVSIYGSLDYFPPEADR 410
>gb|AAF65734.1|AF228525_4 (AF228525) F420H2 dehydrogenase subunit FpoD [Methanosarcina mazei]
Length = 374
Score = 240 bits (606), Expect = 2e-62
Identities = 135/372 (36%), Positives = 212/372 (56%), Gaps = 3/372 (0%)
Query: 24 IEKDTYELFFGPQH-MATENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIA 82
+E + + GPQH M F + LK+ G ++ A G++H+G EK+ E R + I
Sbjct: 5 LESNEMIVHLGPQHPMQPGPFRLNLKLKGETIMDAEVEMGYIHKGIEKILENRTYLQGIT 64
Query: 83 LLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKL 142
++ RIC + E Y V++++ E PERAQ+IR + E++R+ ++L + +
Sbjct: 65 IVDRICYLVALTNEECYVGCVEKLLDIEPPERAQYIRVILEELSRLQSHLLGLGEYGEFI 124
Query: 143 GVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKS 202
G + + RE ++ L + +TGARV H Y GGVR D+P + + + + +K
Sbjct: 125 GFVSMFMYTIKEREDILTLIDMVTGARVTHSYLRFGGVRDDLP-EGFKEKTIPVLNKLKK 183
Query: 203 KLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPE 262
+ D++ + + + I R GIGV+ A + GV+GP LRATGV +D+RK++PYL+Y +
Sbjct: 184 VIRDYEEMFYSDTIYRERTIGIGVLTADEAKSLGVSGPVLRATGVPFDIRKNEPYLVYRD 243
Query: 263 LDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVP 322
LDF+V T GD AR VR E+ + +YI+EQ L+M P + P K P +VP
Sbjct: 244 LDFKVCTETAGDCFARVQVRLNEMRESIYIIEQCLDMIPNGPIFPEGTPYGKRTPVMRVP 303
Query: 323 AGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVIL 382
AG+ F VE +G+ G Y+VSDGS +PYRV VRGP ++ L L++G +AD+ I
Sbjct: 304 AGEVFHRVEDPRGEMGMYMVSDGSDRPYRVKVRGPYYP-TLQALPPLIIGTTVADMVSIS 362
Query: 383 MSLDNCPPDIDR 394
S+D C ++DR
Sbjct: 363 GSMDGCTSEVDR 374
>sp|P22142|NUCM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT PRECURSOR (COMPLEX
I-49KD) (CI-49KD) >gi|101862|pir||S13801 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) 49K chain -
Neurospora crassa >gi|3048|emb|CAA38368.1| (X54508) NADH
dehydrogenase 49 kD subunit [Neurospora crassa]
Length = 478
Score = 233 bits (588), Expect = 3e-60
Identities = 138/393 (35%), Positives = 203/393 (51%), Gaps = 36/393 (9%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
Y + FGPQH A +IL++ G +V+A + G LHRG EKL EYR + + R+
Sbjct: 95 YTVNFGPQHPAAHGVLRLILELKGEEIVRADPHVGLLHRGTEKLCEYRTYLQALPYFDRL 154
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E ++LAV++++ E+PERA+WIRT E+ R+ +L ++ + +G T
Sbjct: 155 DYVSMMTNEQCFALAVEKLLNVEIPERAKWIRTMFAEITRILNHLMSVLSHAMDVGALTP 214
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGD------KWLRQLKDTVEYIK 201
W RE+LM +E ++GAR++ Y PGGV +DIP W Q D ++ +
Sbjct: 215 FLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIPLGLLDDIYMWATQFGDRIDETE 274
Query: 202 SKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYP 261
L D N I R+ GIGV+ AL TG LR +GV +D+RK PY Y
Sbjct: 275 EMLTD-------NRIWIDRLRGIGVVSAADALNLSFTGVMLRGSGVPWDIRKSQPYDAYD 327
Query: 262 ELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR--- 318
+++F+VP GD R L R E Q L I+ Q L P+GP +VED ++ PR
Sbjct: 328 QVEFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNK-MPAGPVRVEDYKISPPPRSAM 386
Query: 319 -----------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAH 361
+ VP GD ++ +E KG+ G YVVSDGS +PYRVH+R P AH
Sbjct: 387 KENMEALIHHFLLYTKGYAVPPGDTYSAIEGPKGEMGVYVVSDGSERPYRVHIRAPGFAH 446
Query: 362 GIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
+ + L G +AD ++ ++D ++DR
Sbjct: 447 -LGGFDHLSRGHMLADAVAVIGTMDLVFGEVDR 478
>sp|P56908|NUD2_RHIME NADH DEHYDROGENASE I CHAIN D 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN D 2) >gi|5650747|emb|CAB51632.1| (AJ245399)
putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 404
Score = 231 bits (582), Expect = 1e-59
Identities = 136/389 (34%), Positives = 223/389 (56%), Gaps = 31/389 (7%)
Query: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAE---YRPWYTNIALLLR 86
L GPQH +T ++L++DG V + + G+LHRG EKLAE Y + L
Sbjct: 22 LNLGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQIFPLTDRLDY 81
Query: 87 ICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYT 146
+C P +++ ++LAV++++G E P RAQ+IR + E+AR+S +L L LG T
Sbjct: 82 LCPPSNNLA---FALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPMDLGAMT 138
Query: 147 AGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPD 206
A +A RE +M L E +TGAR++ Y GGVR D+P D +L ++++ E +++ D
Sbjct: 139 ALLYAMREREMIMDLLEMITGARMHTSYCRVGGVREDLP-DGFLPKIREFCEIFPNRIRD 197
Query: 207 FDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFE 266
++ L+ N + R +G+GV+ A+ G++GPNLRA+GV +D+R+D+PY +Y LDF+
Sbjct: 198 YERLIENNRVFLSRTQGVGVISATDAIDLGLSGPNLRASGVDWDIRRDEPYEIYDRLDFD 257
Query: 267 VPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLK------------ 314
V T EGD +R L R E+ + + ++EQ +E P G ++V+ P +
Sbjct: 258 VITREEGDCYSRWLCRVDEMRESIRLIEQCMEQ-MPEGAFQVDIPTIAFPVDKERVHCSM 316
Query: 315 ---------NLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRV 365
+ F VPAG+ ++ +E+ KG+ G Y++SDGS KP+R+ VR PS + ++
Sbjct: 317 EALIQHFDLSAYGFDVPAGEVYSVIEAPKGELGFYIISDGSPKPFRMKVRAPSFVN-LQA 375
Query: 366 LEQLLVGARIADVPVILMSLDNCPPDIDR 394
L + +AD+ +L SLD ++D+
Sbjct: 376 LFGVTNARYLADMIAVLGSLDPVMAEVDK 404
>sp|Q9ZDH4|NUOD_RICPR NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|7432629|pir||D71692 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain D RP354 - Rickettsia
prowazekii >gi|3860914|emb|CAA14814.1| (AJ235271) NADH
DEHYDROGENASE I CHAIN D (nuoD) [Rickettsia prowazekii]
Length = 389
Score = 227 bits (573), Expect = 2e-58
Identities = 138/388 (35%), Positives = 209/388 (53%), Gaps = 24/388 (6%)
Query: 28 TYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLR 86
T L GPQH AT +IL+MDG V A + G LHRG EKL E++ + I R
Sbjct: 5 TITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDR 64
Query: 87 ICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYT 146
+ E ++LAV+ ++ VP RAQ+IR E+ R+ + I + +G T
Sbjct: 65 LDYVSPMCQEHAFALAVESLLECSVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGATT 124
Query: 147 AGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPD 206
W RE++M +E ++G+R++ Y PGGV D+P + L + +E SKL D
Sbjct: 125 PLLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLP-ENLLEDINKFIEQFPSKLND 183
Query: 207 FDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFE 266
+NL+ EN + +R+ IGV+ +K A+ G +GP LR +G+A+D+RK +PY +Y E+DFE
Sbjct: 184 IENLLNENRLWKQRLVDIGVVSQKDAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDEMDFE 243
Query: 267 VPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR-------- 318
VP + GD R LVR E+ + + I++Q + + P G K +DP+L R
Sbjct: 244 VPIGKNGDCYDRYLVRILEMYESIKIIKQCI-VKMPKGQVKTDDPKLTPPTRGKMKESME 302
Query: 319 ------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVL 366
+ VP G+ + VE+ KG+FG Y+ S G +KPYR ++ P AH ++ L
Sbjct: 303 AMIHHFKLYTEGYDVPIGETYKAVEAPKGEFGVYLYSQGGNKPYRCRIKAPGFAH-LQGL 361
Query: 367 EQLLVGARIADVPVILMSLDNCPPDIDR 394
+ G IADV I+ +LD +IDR
Sbjct: 362 NFMSKGHLIADVITIIATLDIVFGEIDR 389
>gi|11467085 NADH dehydrogenase, subunit 7 [Acanthamoeba castellanii]
>gi|3914189|sp|Q37384|NUCM_ACACA NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|1078746|pir||S53862 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - Acanthamoeba
castellanii mitochondrion >gi|562066|gb|AAD11854.1|
(U12386) NADH dehydrogenase, subunit 7 [Acanthamoeba
castellanii]
Length = 401
Score = 221 bits (557), Expect = 1e-56
Identities = 133/387 (34%), Positives = 208/387 (53%), Gaps = 24/387 (6%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ + FGPQH A +IL++DG V KA + G LHRG EKL EY+ + + R+
Sbjct: 18 FTMNFGPQHPAAHGVLRLILELDGELVRKADPHIGLLHRGTEKLIEYKTYIQALPYFDRL 77
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E YSLA+++++ VP RAQ+IR E+ R+ ++ + + +G T
Sbjct: 78 DYVSMMSQEHAYSLAIEKLLNCNVPIRAQYIRVIYSELTRILNHILAVTTHAMDVGALTP 137
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDF 207
W RE+LM +E ++GAR++ Y PGGV +D P W + VE +L +
Sbjct: 138 FLWLFEEREKLMEFYERVSGARMHAAYIRPGGVAQDFPLGLW-NDIMQFVEQFFWRLVEV 196
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
+ L+ N I +R+ +G++ + AL+ G +G LR +G+A+D+RK++PY +Y +L+F +
Sbjct: 197 EELLNGNRIWKQRLVDVGIVTAEEALSHGFSGVMLRGSGIAWDLRKNNPYEVYNKLNFNI 256
Query: 268 PTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR--------- 318
P + GD R L+R YE+ + L I++Q L P+G KV D ++ R
Sbjct: 257 PIGKNGDCYDRYLIRVYEMYESLNIIKQCL-TAMPAGLIKVNDKKITPPERTDMKYSMES 315
Query: 319 -----------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLE 367
F VP + +A VE+ KG+FG YVVSDGS+KPYR ++ P H ++ L
Sbjct: 316 LIHHFKLYSEGFNVPENETYACVEAPKGEFGVYVVSDGSNKPYRCKIKAPGFLH-LQSLN 374
Query: 368 QLLVGARIADVPVILMSLDNCPPDIDR 394
+ G IADV I+ + D +IDR
Sbjct: 375 SMSKGHMIADVVTIIGTQDIVFGEIDR 401
>emb|CAC12096.1| (AL445066) probable NADH dehydrogenase, chain D [Thermoplasma
acidophilum]
Length = 369
Score = 220 bits (556), Expect = 2e-56
Identities = 131/366 (35%), Positives = 211/366 (56%), Gaps = 5/366 (1%)
Query: 30 ELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRIC 88
E+ FGPQH + + +K+DG V + G+LHR EK+ E + + N+ R+
Sbjct: 8 EVNFGPQHPSMHGVLRLRVKLDGEIVKEVEPIIGYLHRNAEKIGELQFYCDNMIYFDRMD 67
Query: 89 VPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAG 148
+ E Y A ++++ EVPERAQWIR + E+ R++++L W+ LG+ T
Sbjct: 68 YVAAMNMEVGYLEAAEKLLDIEVPERAQWIRVMMAELNRIASHLVWLGAFGLDLGMLTPF 127
Query: 149 QWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFD 208
+ RE+++++F E++G+R Y GGV +D+ D+ L +K + +L +
Sbjct: 128 FYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVT-DEALDHIKTFIREFPKELNKIE 186
Query: 209 NLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVP 268
+L +N + R +GIG++ K+ A+ GVTGP LRA+GV YDVRK PYL+Y +++F++P
Sbjct: 187 SLFVKNDVFISRTKGIGILSKEMAIDYGVTGPMLRASGVEYDVRKAQPYLVYDKVNFDIP 246
Query: 269 TLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGDAFA 328
+GD LAR LVR E+ Q + I+EQ ++ P+GPY + + + R + G+ +A
Sbjct: 247 VSFKGDNLARFLVRVEEMRQSVKIVEQTIQK-LPAGPYFNQKAKKPLMIRLR-GQGEVYA 304
Query: 329 HVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNC 388
ES KG+FG Y++ DGS +PYRV VR P+ + + VL L IAD+ I S+D
Sbjct: 305 RTESPKGEFGVYLIGDGSLRPYRVRVRSPTFKN-LSVLPALAKDQMIADLISIGGSIDLV 363
Query: 389 PPDIDR 394
++DR
Sbjct: 364 FGEVDR 369
>sp|Q56220|NQO4_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NADH DEHYDROGENASE 1, CHAIN
4) (NDH-1, CHAIN 4) >gi|7432634|pir||T11901 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO4 -
Thermus aquaticus thermophilus
>gi|1279864|gb|AAA97941.1| (U52917) NADH dehydrogenase
I, subunit NQO4 [Thermus thermophilus]
Length = 409
Score = 220 bits (555), Expect = 2e-56
Identities = 133/396 (33%), Positives = 214/396 (53%), Gaps = 24/396 (6%)
Query: 20 ELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWY 78
E + + L GPQH +T +++ + G V++ + + G+LH GFEK E+R +
Sbjct: 17 EAKELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYL 76
Query: 79 TNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGL 138
NI R+ S + Y+LAV++++G VP RA+ IR + E++R++++L ++
Sbjct: 77 QNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTG 136
Query: 139 SFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVE 198
LG T +A RE ++ LFE +TG R +H Y GGV+ D+P ++++ +LK +E
Sbjct: 137 LLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLP-EEFVPELKKLLE 195
Query: 199 YIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYL 258
+ ++ +++ L E+ I Y R G+GV+ + A+ G+TG +LRA+GV YDVRK PY
Sbjct: 196 VLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYS 255
Query: 259 LYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR 318
Y F+VP GD R LVR E+ + + I++Q LE P GP + +P++ PR
Sbjct: 256 GYETYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERLEP-GPVRDPNPQITPPPR 314
Query: 319 --------------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPS 358
F P G+ + ES +G+ G Y+VSDG PYRV VR PS
Sbjct: 315 HLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPS 374
Query: 359 IAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
+ ++ L G ++ D+ I+ SLD D+DR
Sbjct: 375 FVN-LQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409
>pir||F82821 NADH-ubiquinone oxidoreductase, NQO4 subunit XF0308 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105131|gb|AAF83119.1|AE003884_4 (AE003884)
NADH-ubiquinone oxidoreductase, NQO4 subunit [Xylella
fastidiosa]
Length = 435
Score = 219 bits (552), Expect = 5e-56
Identities = 141/412 (34%), Positives = 223/412 (53%), Gaps = 47/412 (11%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
Y + FGPQH A +IL+MDG VV+A + G LHRG EKLAE +P+ +I + R+
Sbjct: 25 YTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSIGYMDRL 84
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E Y A++ +IG + PERAQ+IRT E+ R+ +L W+ + LG
Sbjct: 85 DYVSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALDLGAMAV 144
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPG-------DKW-----LRQLK- 194
+A RE LM ++E ++GAR++ Y PGGV RD+P +W L++L
Sbjct: 145 MLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKQSRWHKGKALKRLNA 204
Query: 195 -------DTVEYIKSKLP----DFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLR 243
D +E+ P +++ L+ +N I +R G+GV++ A A G+TG LR
Sbjct: 205 AREGSMLDFLEHFADTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGMTGVMLR 264
Query: 244 ATGVAYDVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQL---LEMG 300
+GVA+D+RK PY Y +DF++P GD R L R E+ + I++Q L++
Sbjct: 265 GSGVAWDLRKKQPYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCVQWLKVN 324
Query: 301 PPS---GPYKVEDPRLKNLP--------RFK-------VPAGDAFAHVESTKGDFGAYVV 342
P +KV P+ +++ FK VPAG+ ++ VE+ KG+FG Y++
Sbjct: 325 PGQVMVENFKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFGCYLI 384
Query: 343 SDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
SDG++KP+RVH+R P AH + ++ ++ G +ADV ++ + D ++DR
Sbjct: 385 SDGANKPFRVHLRAPGFAH-LSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 435
>sp|P29916|NQO4_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NADH DEHYDROGENASE 1, CHAIN
4) (NDH-1, CHAIN 4) >gi|281484|pir||F42573 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) 48K chain -
Paracoccus denitrificans >gi|150623|gb|AAA03038.1|
(M93015) NADH dehydrogenase [Paracoccus denitrificans]
Length = 412
Score = 218 bits (550), Expect = 8e-56
Identities = 132/388 (34%), Positives = 205/388 (52%), Gaps = 24/388 (6%)
Query: 29 YELFFGPQHMATENF-SIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ + FGPQH A ++L++DG V +A + G LHRG EKL E R + N+ L R+
Sbjct: 27 FNINFGPQHPAAHGLLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRL 86
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E + LA++ + G +P RA IR E+ R+ +L + + +G T
Sbjct: 87 DYVAPMNQEHAWCLAIERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMDVGALTP 146
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDF 207
W RE LM +E GAR++ Y PGGV +D+P D L +++ E + D
Sbjct: 147 PLWGFEAREELMIFYERACGARLHAAYFRPGGVHQDLPPD-LLDDIEEWCERFPKLVDDL 205
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
D L+ EN I +R+ IG++ + AL G TG +R +G+A+D+R+ PY Y E DF++
Sbjct: 206 DTLLTENRIFKQRLVDIGIVTEADALDWGYTGVMVRGSGLAWDLRRSQPYECYDEFDFQI 265
Query: 268 PTLREGDALARALVRRYELEQDLYILEQLLE--MGPPSGPY----KVEDPRLKNLPR--- 318
P R GD R L R E+ + I++Q ++ P+G K+ PR + R
Sbjct: 266 PVGRNGDCYDRYLCRMAEMRESCKIMQQAVQKLRAEPAGDVLARGKLTPPRRAEMKRDME 325
Query: 319 ------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVL 366
FKVPAG+ +A VE KG+FG Y+V+DG++KP+R +R P AH ++ +
Sbjct: 326 SLIHHFKLYTEGFKVPAGEVYAAVEGPKGEFGVYLVADGTNKPWRAKLRAPGFAH-LQSI 384
Query: 367 EQLLVGARIADVPVILMSLDNCPPDIDR 394
+ + G +ADVP I+ +LD ++DR
Sbjct: 385 DWMSRGHMLADVPAIIATLDIVFGEVDR 412
>pir||B81222 NADH dehydrogenase I, D chain NMB0244 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225466|gb|AAF40698.1| (AE002381) NADH dehydrogenase
I, D subunit [Neisseria meningitidis MC58]
Length = 418
Score = 217 bits (548), Expect = 1e-55
Identities = 141/412 (34%), Positives = 220/412 (53%), Gaps = 47/412 (11%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
Y + FGPQH A +IL++DG ++V+A + G LHRG EKLAE + + + + R+
Sbjct: 8 YTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPYMDRL 67
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
V E Y LAV++++G +VP RAQ+IR E+ R+ +L I +F +G TA
Sbjct: 68 DYVSMMVNEQAYCLAVEKLVGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTA 127
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIP-------GDKW-----LRQLKD 195
+A RE LM L+E ++GAR++ Y PGGV RD+P G K+ L+QL +
Sbjct: 128 ILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLKQLNE 187
Query: 196 T------------VEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLR 243
+ E + + L+ +N I +R GIGV+ + A+ +G TG LR
Sbjct: 188 SREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLR 247
Query: 244 ATGVAYDVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLE-MGPP 302
+GV +DVRK PY +Y ++DF++P GD R L R E+ Q + I++Q E +
Sbjct: 248 GSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVN 307
Query: 303 SGP-----YKVEDPRLKNLP--------RFK-------VPAGDAFAHVESTKGDFGAYVV 342
GP +K P+ + FK VP G+ + VE KG+FG Y++
Sbjct: 308 PGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFGVYII 367
Query: 343 SDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
SDG++KPYR+ +R P AH ++ ++++ G +ADV I+ + D ++DR
Sbjct: 368 SDGANKPYRLKIRAPGFAH-LQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>emb|CAB65521.1| (AJ249783) NUCM protein [Yarrowia lipolytica]
Length = 466
Score = 216 bits (544), Expect = 4e-55
Identities = 127/393 (32%), Positives = 203/393 (51%), Gaps = 36/393 (9%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ + FGPQH A +IL++ G ++++ + G LHRG EKL EY+ + + R+
Sbjct: 83 FTINFGPQHPAAHGVLRLILELSGEEIIRSDPHVGLLHRGTEKLIEYKTYMQALPYFDRL 142
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E ++SLAV++++ EVP R ++IRT E+ RV +L + + +G T
Sbjct: 143 DYVSMMTNEQVFSLAVEKLLNVEVPLRGKYIRTMFGEITRVLNHLMSVCSHAMDVGALTP 202
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGD------KWLRQLKDTVEYIK 201
W RE+LM +E ++GAR++ Y PGGV +D+P W Q D
Sbjct: 203 FLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPAGLLDDIYMWATQFGD------ 256
Query: 202 SKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYP 261
+L + + L+ +N I R IG + + AL G++GP LR +G+ +D+RK+ PY Y
Sbjct: 257 -RLDEIEELLTDNRIWKLRTVNIGTVTAQDALNLGLSGPMLRGSGIPFDIRKNAPYDAYD 315
Query: 262 ELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR--- 318
++DF+VP GD R L+R E Q L I+EQ P+G KVED ++ + PR
Sbjct: 316 KVDFDVPVGMNGDCYDRYLIRMAEFRQSLRIIEQCCN-DMPAGAVKVEDFKINSPPRNLM 374
Query: 319 -----------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAH 361
+ VP G+ + +E+ KG+ G YVVSDGS +PY+ +R P AH
Sbjct: 375 KEDMEALIHHFLLYTKGYSVPPGETYTAIEAPKGEMGVYVVSDGSERPYKCKIRAPGFAH 434
Query: 362 GIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
+ + + G + D I+ ++D ++DR
Sbjct: 435 -LGAFDHIARGHFLPDAVAIIGTMDLVFGEVDR 466
>gi|11466533 NADH dehydrogenase, subunit 7 [Reclinomonas americana]
>gi|6647647|sp|O21270|NUCM_RECAM NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|7432630|pir||S78164 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - Reclinomonas
americana (ATCC 50394) mitochondrion
>gi|2258363|gb|AAD11897.1| (AF007261) NADH
dehydrogenase, subunit 7 [Reclinomonas americana]
Length = 396
Score = 215 bits (543), Expect = 5e-55
Identities = 130/390 (33%), Positives = 212/390 (54%), Gaps = 30/390 (7%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ + FGPQH A ++L+++G V +A + G LHRG EKL EY+ + + R+
Sbjct: 13 FTMNFGPQHPAAHGVLRLVLELNGEVVNRADPHIGLLHRGTEKLIEYKNYLQALPYFDRL 72
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E YSLAV++++G EVP+RAQ+IR E+ R+ +L + + +G T
Sbjct: 73 DYVSMMAQEHAYSLAVEKLLGCEVPKRAQYIRVLFCEITRILNHLMAVTTHALDVGAMTP 132
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIK---SKL 204
W RE+LM +E ++GAR++ Y PGGV +D+P + +D ++ K S++
Sbjct: 133 FLWGFEEREKLMEFYERVSGARMHAAYIRPGGVSQDMP----MGLSEDIYKFAKQFGSRI 188
Query: 205 PDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELD 264
+ ++++ N I +R+ IG + + AL G +G LR +G+A+D+RK PY +Y EL+
Sbjct: 189 DEIEDVLSSNRIWKQRLVDIGTVSAEEALDWGFSGVMLRGSGIAWDLRKTQPYDVYDELE 248
Query: 265 FEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR------ 318
F++P +GD R L+R E+ Q L ++ Q L P+G KV+D ++ R
Sbjct: 249 FDIPVGTKGDCYDRYLIRVEEMRQSLKLIMQCLNK-MPTGVIKVDDKKISPPSRVDMKDS 307
Query: 319 --------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIR 364
+ VP G+ + VE+ KG+FG Y+VSDGS KPYR ++ P +H ++
Sbjct: 308 MEALIHHFKLYTEGYSVPIGETYTAVEAPKGEFGVYLVSDGSSKPYRCKIKAPGFSH-LQ 366
Query: 365 VLEQLLVGARIADVPVILMSLDNCPPDIDR 394
L + G IADV I+ + D ++DR
Sbjct: 367 GLNFMSKGHMIADVVTIIGTQDIVFGEVDR 396
>pir||D81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain D NMA0016
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7378794|emb|CAB83336.1| (AL162752) NADH
dehydrogenase I chain D [Neisseria meningitidis Z2491]
Length = 418
Score = 215 bits (543), Expect = 5e-55
Identities = 140/412 (33%), Positives = 217/412 (51%), Gaps = 47/412 (11%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
Y + FGPQH A +IL++DG ++V+A + G LHRG EKLAE + + + + R+
Sbjct: 8 YTINFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPYMDRL 67
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
V E Y LAV+++ G +VP RAQ+IR E+ R+ +L I +F +G TA
Sbjct: 68 DYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTA 127
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIP------------GDKWLRQLKD 195
+A RE LM L+E ++GAR++ Y PGGV RD+P K L+QL +
Sbjct: 128 ILYAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNE 187
Query: 196 T------------VEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLR 243
+ E + + L+ +N I +R GIGV+ + A+ +G TG LR
Sbjct: 188 SREGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLR 247
Query: 244 ATGVAYDVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLE-MGPP 302
+GV +DVRK PY +Y ++DF++P GD R L R E+ Q + I++Q E +
Sbjct: 248 GSGVEWDVRKTQPYEVYDKMDFDIPVGVNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVN 307
Query: 303 SGP-----YKVEDPRLKNLP--------RFK-------VPAGDAFAHVESTKGDFGAYVV 342
GP +K P+ + FK VP G+ + VE KG+FG Y++
Sbjct: 308 PGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEFGVYII 367
Query: 343 SDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
SDG++KPYR+ +R P AH ++ ++++ G +ADV I+ + D ++DR
Sbjct: 368 SDGANKPYRLKIRAPGFAH-LQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gb|AAF56465.1| (AE003751) CG11913 gene product [Drosophila melanogaster]
Length = 502
Score = 214 bits (540), Expect = 1e-54
Identities = 140/400 (35%), Positives = 208/400 (52%), Gaps = 26/400 (6%)
Query: 18 GMELYPIEKD--TYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEY 74
G ++ P+++ T + FGP H A +IL++D V+ A + G LHRG EKL EY
Sbjct: 106 GKQIPPVDRTFRTKLINFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEY 165
Query: 75 RPWYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFW 134
+ + + R+ E Y LAV++++ EVP RA++IRT E+ R++ +
Sbjct: 166 KTYTQALPYFDRLDYVSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNHTMA 225
Query: 135 IMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLK 194
I G T W RE+L E +GAR++ Y PGGV DIP +L L
Sbjct: 226 IGSSVLDCGAITPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVASDIPLG-FLHDLY 284
Query: 195 DTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKD 254
+ +L + +++V +N I R GIGV+ AL G TGP LRATGV +D+RK
Sbjct: 285 QFINQFNERLDEVEDVVTDNRIWRMRNIGIGVISAHDALNYGCTGPVLRATGVKWDLRKQ 344
Query: 255 DPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLK 314
PY Y E+DF+V GD R LVR E+ + + I++Q ++ PP G KV+D ++
Sbjct: 345 QPYDAYDEMDFDVVVGSNGDCYDRYLVRMREMRESVNIIKQCIDAMPP-GEIKVDDLKIC 403
Query: 315 NLPR--------------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHV 354
R F+VP G + VES KG+FGA+++SDGS +PYR +
Sbjct: 404 PPQRSKMKEGMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGEFGAFLISDGSSRPYRCKI 463
Query: 355 RGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
R S AH + ++ ++ +ADV I+ SLD +IDR
Sbjct: 464 RPASYAH-LALMAKMAPAHLLADVVAIIGSLDIVFGEIDR 502
>gi|9695385 NADH dehydrogenase subunit 7 [Phytophthora infestans]
>gi|6692638|gb|AAF24781.1|U17009_13 (U17009) NADH
dehydrogenase subunit 7 [Phytophthora infestans]
Length = 392
Score = 214 bits (539), Expect = 2e-54
Identities = 124/387 (32%), Positives = 210/387 (54%), Gaps = 24/387 (6%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ + FGPQH A +IL+++G V KA ++ G LHRG EKL EY+ + + R+
Sbjct: 9 FSINFGPQHPAAHGVLRLILELNGEVVQKADSHIGLLHRGTEKLIEYKNYLQALPYFDRL 68
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E Y LA+++++ ++P RAQ+IR E+ R+ +L + + +G T
Sbjct: 69 DYVSMMCQEHAYVLAIEKLLNCDIPLRAQYIRVLFSEITRILNHLLAVCCHALDVGAMTP 128
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDF 207
W RE+LM +E ++GAR++ Y PGGV +D+P L + + ++L +
Sbjct: 129 YFWGFEEREKLMEFYERVSGARMHAAYFRPGGVNQDLP-KGLLNDIYIFCDQFNTRLDEI 187
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
+ ++ N I +R+ IG++ K AL G +G LR +G+++D+RK PY +Y +LDF++
Sbjct: 188 EEMLTNNRIWKQRLVDIGIVSAKDALNLGFSGVMLRGSGISWDLRKTQPYEIYDQLDFDI 247
Query: 268 PTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVP----- 322
P GD R L+R E+ Q + I+ Q+L P+GP K++D ++ N R ++
Sbjct: 248 PVGTNGDCYDRYLIRIEEMRQSIRIILQILNK-IPNGPIKLDDKKITNPNRIQIKNSMES 306
Query: 323 ---------------AGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLE 367
+G+ + +E+ KG++G Y+VSDG++KPYR ++ P H ++ L+
Sbjct: 307 LIHHFKYYSENISINSGETYTVIEAPKGEYGVYLVSDGTNKPYRCKIKSPGFLH-LQALD 365
Query: 368 QLLVGARIADVPVILMSLDNCPPDIDR 394
L IADV I+ +LD +IDR
Sbjct: 366 FLAKNHMIADVVTIIGTLDVVFGEIDR 392
>pir||T34621 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nuoD -
Streptomyces coelicolor >gi|5042274|emb|CAB44528.1|
(AL078618) nuoD, NADH dehydrogenase subunit
[Streptomyces coelicolor]
Length = 440
Score = 212 bits (534), Expect = 6e-54
Identities = 133/400 (33%), Positives = 207/400 (51%), Gaps = 42/400 (10%)
Query: 34 GPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPES 92
GPQH +T +IL++DG V +A G+LH G EK EYR W + R+
Sbjct: 44 GPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGTTFVTRMDYLTP 103
Query: 93 DVPEAIYSLAVDEIIGWE--VPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQW 150
EA Y L V++++G + +P+RA IR ++E+ R+S++L I +LG T +
Sbjct: 104 FFNEAAYCLGVEKLLGIDDQIPDRATIIRVLLMELNRLSSHLVAIATGGMELGATTIMIY 163
Query: 151 AAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNL 210
RE ++ ++E +TG R+ H Y PGG+ +D+P + Q+++ V+ + LP++D L
Sbjct: 164 GFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGA-VDQIREFVKKMNKNLPEYDKL 222
Query: 211 VFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTL 270
N I RM+ +G +D +A G TGP LR+TG+ +D+RK PY Y DF+VPT
Sbjct: 223 ATGNPIFKARMQDVGYLDLAGCMALGATGPVLRSTGLPHDLRKTQPYCGYETYDFDVPTA 282
Query: 271 REGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPR-----------------L 313
D+ R L+R E+ Q L I+EQ L+ P GP V D + L
Sbjct: 283 DTCDSYGRFLIRLEEMRQSLRIVEQCLDRLQP-GPVMVADKKIAWPAQLALGPDGLGNSL 341
Query: 314 KNLPR-------------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHV 354
++ + F+VP + VES KG+ G +VVSDG +P+RVH
Sbjct: 342 DHIKKIMGTSMEALIHHFKLVTEGFRVPPAQVYTAVESPKGELGVHVVSDGGTRPFRVHF 401
Query: 355 RGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
R PS + ++ + + G ++ADV V + S+D +DR
Sbjct: 402 RDPSFTN-LQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|11466595 NADH dehydrogenase subunit 7 [Rhodomonas salina]
>gi|10444182|gb|AAG17756.1|AF288090_32 (AF288090) NADH
dehydrogenase subunit 7 [Rhodomonas salina]
Length = 399
Score = 209 bits (526), Expect = 5e-53
Identities = 128/383 (33%), Positives = 205/383 (53%), Gaps = 24/383 (6%)
Query: 33 FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPE 91
FGPQH A +IL+++G ++KA + G LHRG EKL E + + + R+
Sbjct: 20 FGPQHPAAHGVLRLILELNGETIIKADPHIGLLHRGTEKLIENKTYIQGLPYFDRLDYVS 79
Query: 92 SDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWA 151
+ E + LA++ ++ EVP RAQ+IR E+ R+ +L I + +G T W
Sbjct: 80 MMINEHAFCLAIERLLNIEVPLRAQFIRVIFSEITRILNHLLAICCHAMDVGALTPILWG 139
Query: 152 AAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLV 211
RE+LM +E ++GAR++ Y PGGV +D+P K E S++ + + L+
Sbjct: 140 FEEREKLMEFYERVSGARMHAAYFRPGGVSQDLPLGLCADIFK-FCEQFSSRIDELEELL 198
Query: 212 FENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLR 271
EN I +R+ +GV+ + AL G+TGP LR+TG ++D+R+ PY +Y +LDF++P +
Sbjct: 199 TENRIWKQRLVDVGVITFEQALNLGLTGPLLRSTGFSWDLRRTHPYEIYDKLDFDIPIGK 258
Query: 272 EGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR------------- 318
GD+ R +R E+ Q L I+ Q L P G +KV + ++ R
Sbjct: 259 NGDSYDRYCIRIEEMRQSLSIIVQCLN-NMPQGSFKVNNMKISPPSRVDMKRSMESLIHH 317
Query: 319 -------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLV 371
F +P G +A VE KG+FG +V+DG++KPYR ++ P H ++ L+ L
Sbjct: 318 FKYFSEGFTIPKGIVYAAVEHPKGEFGVSLVTDGTNKPYRCKIKAPGFIH-LQALDFLSR 376
Query: 372 GARIADVPVILMSLDNCPPDIDR 394
G +AD+ I+ +LD +IDR
Sbjct: 377 GHLLADLVTIIGTLDIVFGEIDR 399
>gi|11465869 NADH dehydrogenase subunit 7 [Ochromonas danica]
>gi|10505202|gb|AAG18384.1|AF287134_9 (AF287134) NADH
dehydrogenase subunit 7 [Ochromonas danica]
Length = 398
Score = 208 bits (524), Expect = 9e-53
Identities = 133/391 (34%), Positives = 204/391 (52%), Gaps = 22/391 (5%)
Query: 24 IEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIA 82
IE + + FGPQH A +IL++DG V KA + G LHRG EKL E++ + +
Sbjct: 10 IELKNFTINFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIEFKTYLQALP 69
Query: 83 LLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKL 142
R+ E YSLA+++I +PERA+ IRT E+ R+ +L + + +
Sbjct: 70 YFDRLDYVSMMAQEHTYSLAIEKIGNIVIPERAKIIRTIFAEITRLLNHLLAVGCHAMDV 129
Query: 143 GVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKS 202
G T WA RE+LM +E ++GAR++ Y PGGV DIP L L V
Sbjct: 130 GAMTPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVSMDIPLG-LLDDLYIFVNQFNY 188
Query: 203 KLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPE 262
+L + + ++ ++ I R+ IGV+ A+ G +G LR +G+++D+RK+ PY +Y E
Sbjct: 189 RLDEMEEMLTKSRIWKERLVDIGVVSAAKAIEWGFSGVMLRGSGISWDLRKNQPYEIYSE 248
Query: 263 LDFEVPTLREGDALARALVRRYELEQDLYILEQLL---EMGP-PSGPYKVEDP---RLKN 315
+DF +P GD R LVR E+ Q +YI+ + L + GP S YK+ P +KN
Sbjct: 249 IDFSIPVGNSGDCYDRYLVRVEEMRQSIYIISKCLTKIKEGPIKSNNYKISPPSRLEMKN 308
Query: 316 LPR------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGI 363
F +P G+ + E+ KG+FG Y+VS+ + KPYR ++ P H +
Sbjct: 309 SMEAVIHHFKYFSEGFVLPCGETYTSTEAPKGEFGVYLVSNNTEKPYRCKIKAPGFGH-L 367
Query: 364 RVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
+ L + G IADV I+ + D +IDR
Sbjct: 368 QALNDMSKGHLIADVVTIIGTQDIVFGEIDR 398
>gi|11466758 ORF392 [Marchantia polymorpha] >gi|128834|sp|P12131|NUCC_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KD SUBUNIT,
CHLOROPLAST (ORF 392) >gi|81368|pir||A05025 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 392 -
liverwort (Marchantia polymorpha) chloroplast
>gi|11729|emb|CAA28140.1| (X04465) ORF392 [Marchantia
polymorpha]
Length = 392
Score = 208 bits (523), Expect = 1e-52
Identities = 127/381 (33%), Positives = 212/381 (55%), Gaps = 23/381 (6%)
Query: 34 GPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPES 92
GP H + +I+ +DG V+ G+LHRG EK+AE R + + R +
Sbjct: 15 GPHHPSMHGVLRLIVTLDGEDVLDCEPVLGYLHRGMEKIAENRTIVQYLPYVTRWDYLAT 74
Query: 93 DVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWAA 152
EAI A +++ +VP+RA +IR +LE++R++++L W+ +G T +
Sbjct: 75 MFTEAITVNAPEKLTNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADIGAQTPFFYIF 134
Query: 153 AYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVF 212
RE + LFE TG R+ H Y GGV D+P W+ + D +Y K+ +++ L+
Sbjct: 135 REREMIYDLFESATGMRMMHNYFRIGGVAVDLPYG-WIDKCLDFCDYFLPKINEYERLIT 193
Query: 213 ENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLRE 272
N I +R+EGIG + ++ A+ G++GP LRA+GV +D+RK D Y Y ELD+++ +E
Sbjct: 194 NNPIFLKRVEGIGTVTREEAINWGLSGPMLRASGVQWDLRKVDHYECYDELDWKIQWQKE 253
Query: 273 GDALARALVRRYELEQDLYILEQLLEMGPPSGPYK-VEDPRL------------------ 313
GD+LAR LVR E+++ + I++Q L+ P GP++ +E RL
Sbjct: 254 GDSLARYLVRIGEMKESVKIIQQALK-AIPGGPFENLEARRLNQGKNSEWNLFEYQFISK 312
Query: 314 KNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGA 373
K P FK+P + + VE+ KG+ G +++ D S P+R+ +R P + +++L QL+ G
Sbjct: 313 KPSPTFKLPKQEHYVRVEAPKGELGIFLIGDDSVFPWRLKIRSPGFIN-LQILPQLVKGM 371
Query: 374 RIADVPVILMSLDNCPPDIDR 394
++AD+ IL S+D ++DR
Sbjct: 372 KLADIMTILGSIDIIMGEVDR 392
>sp|Q9RU89|NUOD_DEIRA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|7473200|pir||A75388 NADH dehydrogenase I, D
subunit - Deinococcus radiodurans (strain R1)
>gi|6459264|gb|AAF11069.1|AE001994_5 (AE001994) NADH
dehydrogenase I, D subunit [Deinococcus radiodurans]
Length = 401
Score = 208 bits (523), Expect = 1e-52
Identities = 130/392 (33%), Positives = 204/392 (51%), Gaps = 24/392 (6%)
Query: 24 IEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIA 82
+ + L GPQH +T +++ MDG V + + G+LH GFEK E+R + N+
Sbjct: 13 LHTELMSLNVGPQHPSTHGVLRLVVDMDGEYVTRVEPHMGYLHTGFEKTMEHRTYQQNVT 72
Query: 83 LLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKL 142
R S E Y L+V++++G EVPERA +R + E+ R+ ++L ++ L
Sbjct: 73 YAPRTDYLHSFSHELAYVLSVEKLLGAEVPERANVVRVILHELGRIHSHLVFVGTGLLDL 132
Query: 143 GVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKS 202
G T +A +E LFE + G R+ Y GG+ RD+P + W +++ + ++
Sbjct: 133 GALTPFFYAFREKEACQDLFEAVCGYRMNQGYFRVGGLARDLP-EGWTARVEAFLNQMER 191
Query: 203 KLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPE 262
+ ++ L N I R +G+GV+ AL G+TGPNLRA+GV D RKD PY + +
Sbjct: 192 GVEEYTTLFAANPIFLDRAKGVGVIPADAALDLGLTGPNLRASGVPLDNRKDHPYCGFED 251
Query: 263 LDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR---- 318
DF V + +GD+LAR +R E + + I+ Q L+ P GP K + ++ PR
Sbjct: 252 YDFNVISSPDGDSLARFNMRLLEFSESIKIIRQGLQKLRP-GPIKDPNRKISLPPRHELE 310
Query: 319 ----------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHG 362
F P G+A+ +ES +G+ G YV+SDG PYRV +R PS +
Sbjct: 311 TSMEAVIHHFKLVTEGFHPPLGEAYVPIESARGEVGYYVISDGGSMPYRVKIRAPSFVN- 369
Query: 363 IRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
++ LE VG + AD+ IL ++D D+DR
Sbjct: 370 LQALEYACVGVQFADLITILATIDPVLGDVDR 401
>gi|11466310 NADH dehydrogenase subunit 7 [Cafeteria roenbergensis]
>gi|11134161|sp|Q9TAJ7|NUCM_CAFRO NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|6180092|gb|AAF05789.1|AF193903_12
(AF193903) NADH dehydrogenase subunit 7 [Cafeteria
roenbergensis]
Length = 398
Score = 206 bits (520), Expect = 3e-52
Identities = 128/396 (32%), Positives = 205/396 (51%), Gaps = 24/396 (6%)
Query: 20 ELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWY 78
+L E + L FGPQH A +IL+++G + A + G LHRG EKL E R +
Sbjct: 6 KLKETEIKDFTLNFGPQHPAAHGVLRLILELNGETIKNADPHIGLLHRGTEKLIENRNYL 65
Query: 79 TNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGL 138
+ R+ V E YSLAV+ + G +P+RAQWIR E+ R+ +L I
Sbjct: 66 QALPYFDRLDYVSMMVQEHAYSLAVERLYGINIPQRAQWIRVLFSEITRILNHLLAIGCH 125
Query: 139 SFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVE 198
S +G T W RE+LM +E ++GAR++ Y PGGV +D+P ++ + +
Sbjct: 126 SMDVGAMTPLLWGFEEREKLMEFYERVSGARMHASYIRPGGVAQDLPSG-FVEDVYSFIL 184
Query: 199 YIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYL 258
+L + + L+ N I +R+ +G++ K A+ G +G LR+TG+ +D+R+ PY
Sbjct: 185 DFSVRLDEIEELLTNNRIWKQRLVNVGIVTAKQAIQNGFSGVLLRSTGIPWDLRRSQPYE 244
Query: 259 LYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPR------ 312
+Y ++ F +P GD R L+R E+ Q L I+ L+ P G K +D +
Sbjct: 245 IYDKVPFRIPVGTRGDCYDRYLIRMQEMRQSLRIMMACLKY-LPGGSIKSDDKKFVPPLR 303
Query: 313 --LKN------------LPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPS 358
+KN FKVPAG +A VE+ KG+ G +++SDGS++P+R ++ P
Sbjct: 304 WEMKNSMESVIHHFKYFTEGFKVPAGQTYAAVEAPKGEMGVFLISDGSNQPFRCKIKAPG 363
Query: 359 IAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
H ++ L ++ IADV I+ + D ++DR
Sbjct: 364 FFH-LQNLPEMTKHHMIADVVTIIGTQDIVFGEVDR 398
>sp|P56907|NUD1_RHIME NADH DEHYDROGENASE I CHAIN D 1 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN D 1) >gi|5650737|emb|CAB51623.1| (AJ245398) nuoD1
[Sinorhizobium meliloti]
Length = 396
Score = 206 bits (519), Expect = 4e-52
Identities = 127/390 (32%), Positives = 205/390 (52%), Gaps = 26/390 (6%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ + FGPQH A ++L++DG V + + G LHRG EKL E + + I R+
Sbjct: 9 FNINFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRL 68
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E ++LAV+ + G +VP R Q IR E+ R+ ++L + + +G T
Sbjct: 69 DYVAPMNQEHAFALAVERLTGTQVPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTP 128
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDF 207
W RE+LM +E GAR++ Y PGGV +D+P + + + + ++ + D
Sbjct: 129 PLWGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLP-HQLVEDIGNWIDPFLKTVDDI 187
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
D L+ N I +R IGV+ + A A G +G +R +G A+D+R+ PY Y +L+F++
Sbjct: 188 DELLTGNRIFKQRNVDIGVVSLEDAWAWGFSGVMVRGSGAAWDLRRSQPYECYSDLEFDI 247
Query: 268 PTLREGDALARALVRRYELEQDLYILEQLLE-------MGPPSG-PYKVEDPRLKNLPR- 318
P + GD R L+R E+ Q I+ Q ++ +GP S K+ P+ + R
Sbjct: 248 PIGKNGDCFDRYLIRMIEMRQSARIMRQCVDRLLGDAKIGPVSSLDGKIVPPKRGEMKRS 307
Query: 319 --------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIR 364
+ VPAG+ +A VE+ KG+FG Y+VSDG++KPYR +R P AH ++
Sbjct: 308 MEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGYAH-LQ 366
Query: 365 VLEQLLVGARIADVPVILMSLDNCPPDIDR 394
++ L G ++ADV +L SLD ++DR
Sbjct: 367 AMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396
>emb|CAB67226.1| (AJ271079) NADH-plastoquinone oxidoreductase 49 kD subunit
[Oenothera elata subsp. hookeri]
Length = 393
Score = 205 bits (517), Expect = 6e-52
Identities = 128/396 (32%), Positives = 211/396 (52%), Gaps = 23/396 (5%)
Query: 19 MELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPW 77
M + KD + GP H + +IL +DG V+ G+LHRG EK+AE R
Sbjct: 1 MNVTTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTV 60
Query: 78 YTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMG 137
+ + R + EAI +++ +VP+RA +IR +LE++R++++L W+
Sbjct: 61 IQYLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGP 120
Query: 138 LSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTV 197
+G T + RE + LFE TG R+ H Y GGV D+P W+ + D
Sbjct: 121 FMADIGAQTPFFYIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYG-WIDKCLDFC 179
Query: 198 EYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPY 257
+Y + + ++ L+ N I R+EG+G++ + A+ G++GP LRA+G+ +D+RK D Y
Sbjct: 180 DYFLTAVSEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIEWDLRKVDRY 239
Query: 258 LLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPY---------KV 308
Y ELD+E+ +EGD+LAR LVR E+ + + I++Q LE G P GPY +
Sbjct: 240 ECYGELDWEIRWQKEGDSLARYLVRMSEMTESIKIIQQALE-GIPGGPYENLEIRCFDRE 298
Query: 309 EDPR----------LKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPS 358
+DP K P F++P + + VE+ KG+ G +++ D S P+R +R P
Sbjct: 299 KDPEWDGFEYRFISKKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPG 358
Query: 359 IAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
+ +++L QL+ ++AD+ IL S+D ++DR
Sbjct: 359 FIN-LQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 (49kD)
(NADH-coenzyme Q reductase); NADH-ubiquinone
oxidoreductase Fe-S protein 2 [Homo sapiens]
>gi|7432632|pir||JE0193 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain NDUFS2 precursor - human
>gi|3337443|gb|AAC27453.1| (AF050640) NADH-ubiquinone
oxidoreductase NDUFS2 subunit [Homo sapiens]
Length = 463
Score = 204 bits (514), Expect = 1e-51
Identities = 127/388 (32%), Positives = 200/388 (50%), Gaps = 30/388 (7%)
Query: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
L FGPQH A +++++ G V K + G LHRG EKL EY+ + + R+
Sbjct: 82 LNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDY 141
Query: 90 PESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQ 149
E YSLAV++++ P RAQWIR E+ R+ ++ + + LG T
Sbjct: 142 VSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFF 201
Query: 150 WAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKS---KLPD 206
W RE++ +E ++GAR++ Y PGGV +D+P L + D ++ K+ +L +
Sbjct: 202 WLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLP----LGLMDDIYQFSKNFSLRLDE 257
Query: 207 FDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFE 266
+ L+ N I R IGV+ + AL G +G LR +G+ +D+RK PY +Y +++F+
Sbjct: 258 LEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 317
Query: 267 VPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR-------- 318
VP GD R L R E+ Q L I+ Q L PP G KV+D ++ R
Sbjct: 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPP-GEIKVDDAKVSPPKRAEMKTSME 376
Query: 319 ------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVL 366
++VP G + +E+ KG+FG Y+VSDGS +PYR ++ P AH + L
Sbjct: 377 SLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAH-LAGL 435
Query: 367 EQLLVGARIADVPVILMSLDNCPPDIDR 394
+++ G +ADV I+ + D ++DR
Sbjct: 436 DKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>sp|O75306|NUCM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT PRECURSOR (COMPLEX
I-49KD) (CI-49KD) >gi|3540239|gb|AAC34362.1| (AF013160)
NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor
[Homo sapiens]
Length = 463
Score = 204 bits (514), Expect = 1e-51
Identities = 127/388 (32%), Positives = 200/388 (50%), Gaps = 30/388 (7%)
Query: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
L FGPQH A +++++ G V K + G LHRG EKL EY+ + + R+
Sbjct: 82 LNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDY 141
Query: 90 PESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQ 149
E YSLAV++++ P RAQWIR E+ R+ ++ + + LG T
Sbjct: 142 VSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFF 201
Query: 150 WAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKS---KLPD 206
W RE++ +E ++GAR++ Y PGGV +D+P L + D ++ K+ +L +
Sbjct: 202 WLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLP----LGLMDDIYQFSKNFSLRLDE 257
Query: 207 FDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFE 266
+ L+ N I R IGV+ + AL G +G LR +G+ +D+RK PY +Y +++F+
Sbjct: 258 LEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 317
Query: 267 VPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR-------- 318
VP GD R L R E+ Q L I+ Q L PP G KV+D ++ R
Sbjct: 318 VPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPP-GEIKVDDAKVSPPKRAEMKTSME 376
Query: 319 ------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVL 366
++VP G + +E+ KG+FG Y+VSDGS +PYR ++ P AH + L
Sbjct: 377 SLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAH-LAGL 435
Query: 367 EQLLVGARIADVPVILMSLDNCPPDIDR 394
+++ G +ADV I+ + D ++DR
Sbjct: 436 DKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>pir||G64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO4 -
Helicobacter pylori (strain 26695)
>gi|2314430|gb|AAD08309.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO4 subunit (NQO4){Triticum aestivum}
[Helicobacter pylori 26695]
Length = 409
Score = 203 bits (511), Expect = 3e-51
Identities = 125/386 (32%), Positives = 205/386 (52%), Gaps = 24/386 (6%)
Query: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
L FGPQH ++ +IL+++G +++KA G+LHRG EKL E + + R+
Sbjct: 26 LNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYMPTTDRLDY 85
Query: 90 PESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQ 149
S Y+ AV+ ++ E+P RAQ IRT +LE+ R+ +++F+I + +G +
Sbjct: 86 TSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALDVGAMSVFL 145
Query: 150 WAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDN 209
+A RE + L E+ GAR+ H GGV D+P + WL LK + ++
Sbjct: 146 YAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPN-WLEGLKKFLGEMRECKKLIQG 204
Query: 210 LVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPT 269
L+ +N I R+E +GV+ +K A + G++G LR TG+AYD+RK++PY LY ELDF+VP
Sbjct: 205 LLDKNRIWRMRLENVGVVTQKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKELDFDVPV 264
Query: 270 LREGDALARALVRRYELEQDLYILEQLLEM-GPPSGPYKVEDPRLKNLPR---------- 318
GD+ R + E+++ + I+EQL+ M P ++P + P+
Sbjct: 265 GNYGDSYDRYCLYMLEIDESVRIIEQLIPMYAKTDTPIMAQNPHYISAPKEDIMTQNYAL 324
Query: 319 ----------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQ 368
+ P G+ +A ES KG+ G ++ S+G P+R+ +R PS H I L
Sbjct: 325 MQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSFYH-IGALSD 383
Query: 369 LLVGARIADVPVILMSLDNCPPDIDR 394
+LVG +AD ++ S + ++DR
Sbjct: 384 ILVGQYLADAVTVIGSTNAVFGEVDR 409
>pir||E71838 nadh oxidoreductase I - Helicobacter pylori (strain J99)
>gi|4155794|gb|AAD06770.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 409
Score = 203 bits (510), Expect = 4e-51
Identities = 125/386 (32%), Positives = 204/386 (52%), Gaps = 24/386 (6%)
Query: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
L FGPQH ++ +IL+++G +++KA G+LHRG EKL E + + R+
Sbjct: 26 LNFGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYMPTTDRLDY 85
Query: 90 PESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQ 149
S Y+ AV+ ++ E+P RAQ IRT +LE+ R+ +++F+I + +G +
Sbjct: 86 TSSTSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALDVGAMSVFL 145
Query: 150 WAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDN 209
+A RE + L E+ GAR+ H GGV D+P + WL LK + ++
Sbjct: 146 YAFKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPN-WLEGLKKFLGEMRECKKLIQG 204
Query: 210 LVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPT 269
L+ +N I R+E +GV+ K A + G++G LR TG+AYD+RK++PY LY ELDF+VP
Sbjct: 205 LLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKELDFDVPV 264
Query: 270 LREGDALARALVRRYELEQDLYILEQLLEM-GPPSGPYKVEDPRLKNLPR---------- 318
GD+ R + E+++ + I+EQL+ M P ++P + P+
Sbjct: 265 GNYGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTDTPIMAQNPHYISAPKEDIMTQNYAL 324
Query: 319 ----------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQ 368
+ P G+ +A ES KG+ G ++ S+G P+R+ +R PS H I L
Sbjct: 325 MQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIHSEGEPYPHRLKIRAPSFYH-IGALSD 383
Query: 369 LLVGARIADVPVILMSLDNCPPDIDR 394
+LVG +AD ++ S + ++DR
Sbjct: 384 ILVGQYLADAVTVIGSTNAVFGEVDR 409
>sp|P17694|NUCM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT (COMPLEX I-49KD)
(CI-49KD) >gi|89676|pir||S04104 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) 49K chain - bovine
Length = 430
Score = 203 bits (510), Expect = 4e-51
Identities = 123/388 (31%), Positives = 200/388 (50%), Gaps = 30/388 (7%)
Query: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
L FGPQH A +++++ G V K + G LHRG EKL EY+ + + R+
Sbjct: 49 LNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDY 108
Query: 90 PESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQ 149
E YSLAV++++ P RAQWIR E+ R+ ++ + + +G T
Sbjct: 109 VSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFF 168
Query: 150 WAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKS---KLPD 206
W RE++ +E ++GAR++ Y PGGV +D+P L + D E+ K+ ++ +
Sbjct: 169 WMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLP----LGLMDDIYEFSKNFSLRIDE 224
Query: 207 FDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFE 266
+ ++ N I R IG++ + AL G +G LR +G+ +D+RK PY +Y +++F+
Sbjct: 225 LEEMLTNNRIWRNRTVDIGIVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 284
Query: 267 VPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR-------- 318
VP GD R L R E+ Q + I+ Q L PP G KV+D ++ R
Sbjct: 285 VPIGSRGDCYDRYLCRVEEMRQSIRIISQCLNKMPP-GEIKVDDAKVSPPKRAEMKTSME 343
Query: 319 ------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVL 366
++VP G + +E+ KG+FG Y+VSDGS +PYR ++ P AH + L
Sbjct: 344 SLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAH-LAGL 402
Query: 367 EQLLVGARIADVPVILMSLDNCPPDIDR 394
+++ G +ADV I+ + D ++DR
Sbjct: 403 DKMSKGHMLADVVAIIGTQDIVFGEVDR 430
>sp|P33600|NUOD_ECOLI NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
4) (NUO4) >gi|431018|gb|AAA03535.1| (L25055) NADH
dehydrogenase [Escherichia coli]
Length = 407
Score = 203 bits (510), Expect = 4e-51
Identities = 131/399 (32%), Positives = 205/399 (50%), Gaps = 25/399 (6%)
Query: 18 GMELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRP 76
GM+ +D L GP H + F I+L++DG +V + + G+ HRG EK+ E +
Sbjct: 12 GMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 71
Query: 77 WYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIM 136
W++ I RI V E Y LAV+++ G VP+R IR + E+ R++++L +I
Sbjct: 72 WHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIS 131
Query: 137 GLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDT 196
+G T +A R+++ L E +TG R++ + GGV D+P W R L++
Sbjct: 132 TFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRG-WDRLLREF 190
Query: 197 VEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDP 256
++++ +L ++ +N I R +G+ M +K AL G TG LRATG+ +DVRK P
Sbjct: 191 LDWMPKRLASYEKAALQNTILKGRSQGVAPMARKEALEWGTTGAGLRATGIDFDVRKARP 250
Query: 257 YLLYPELDFEVPT-LREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKN 315
Y Y DFE+P D R +++ EL Q L ILEQ L P GP+K + P
Sbjct: 251 YSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLN-NMPEGPFKADHPLTTP 309
Query: 316 LPRFK--------------------VPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVR 355
P+ + +PA ++F +E+TKG Y+ SDGS YR VR
Sbjct: 310 PPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVR 369
Query: 356 GPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
PS AH ++ + + G+ ++D+ V L S+D D+DR
Sbjct: 370 TPSFAH-LQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 407
>emb|CAA32523.1| (X14338) NADH:ubiquinone oxidoreductase (428 AA) [Bos taurus]
Length = 428
Score = 203 bits (510), Expect = 4e-51
Identities = 123/388 (31%), Positives = 200/388 (50%), Gaps = 30/388 (7%)
Query: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
L FGPQH A +++++ G V K + G LHRG EKL EY+ + + R+
Sbjct: 47 LNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDY 106
Query: 90 PESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQ 149
E YSLAV++++ P RAQWIR E+ R+ ++ + + +G T
Sbjct: 107 VSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFF 166
Query: 150 WAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKS---KLPD 206
W RE++ +E ++GAR++ Y PGGV +D+P L + D E+ K+ ++ +
Sbjct: 167 WMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLP----LGLMDDIYEFSKNFSLRIDE 222
Query: 207 FDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFE 266
+ ++ N I R IG++ + AL G +G LR +G+ +D+RK PY +Y +++F+
Sbjct: 223 LEEMLTNNRIWRNRTVDIGIVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFD 282
Query: 267 VPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR-------- 318
VP GD R L R E+ Q + I+ Q L PP G KV+D ++ R
Sbjct: 283 VPIGSRGDCYDRYLCRVEEMRQSIRIISQCLNKMPP-GEIKVDDAKVSPPKRAEMKTSME 341
Query: 319 ------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVL 366
++VP G + +E+ KG+FG Y+VSDGS +PYR ++ P AH + L
Sbjct: 342 SLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAH-LAGL 400
Query: 367 EQLLVGARIADVPVILMSLDNCPPDIDR 394
+++ G +ADV I+ + D ++DR
Sbjct: 401 DKMSKGHMLADVVAIIGTQDIVFGEVDR 428
>sp|P57254|NUCD_BUCAI NADH DEHYDROGENASE I CHAIN C/D (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN C/D) >gi|10038839|dbj|BAB12874.1| (AP001118) NADH
dehydrogenase I chain C / D [Buchnera sp. APS]
Length = 600
Score = 202 bits (509), Expect = 5e-51
Identities = 138/415 (33%), Positives = 219/415 (52%), Gaps = 30/415 (7%)
Query: 7 QEELIREARRNGMELYPIEK--DTYELFF---GPQHMATEN-FSIILKMDGNRVVKAIAN 60
+E+L E + EL+ +++ D E F GP H + F I+L++DG +V + +
Sbjct: 189 KEDLEMEGLKFKPELWGMKRKNDNVEFMFLNLGPNHPSAHGAFRIVLQLDGENIVDCVPD 248
Query: 61 PGFLHRGFEKLAEYRPWYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRT 120
G+ HRG EK+AE + W++ I RI V E Y LAV+++ VPE+A+ IR
Sbjct: 249 IGYHHRGAEKMAERQSWHSYIPYTDRIEYLGGCVNELPYVLAVEKLANISVPEKAEVIRV 308
Query: 121 TVLEMARVSAYLFWIMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGV 180
+ E+ R++++L +I +G T +A R+++ L E +TGAR++ + GGV
Sbjct: 309 MMSELFRINSHLLYISTFIQDVGCMTPVFFAFTDRQKIYDLIEAITGARMHPAWFRIGGV 368
Query: 181 RRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGP 240
D+P W LK+ ++++ +L + N +N I R +GI +KK AL GVTG
Sbjct: 369 ANDLP-QGWNILLKEFLDWMPKRLKYYINTALKNSILIHRSKGIAEYNKKEALQWGVTGA 427
Query: 241 NLRATGVAYDVRKDDPYLLYPELDFEVPT-LREGDALARALVRRYELEQDLYILEQLLEM 299
LRATG+ +DVRK PY Y FEVP D +R +++ E+ Q L+IL+Q L
Sbjct: 428 GLRATGLNFDVRKWRPYSGYQNYTFEVPVGSGISDCYSRVMIKVEEIYQSLFILKQCL-C 486
Query: 300 GPPSGPYKVEDPR---------LKNLPRF-----------KVPAGDAFAHVESTKGDFGA 339
PSGP+K ED L+N+ +P ++F +E+TKG
Sbjct: 487 NMPSGPFKSEDSLTTPPSKECVLQNIETMITHFLQVSWGPVIPENESFQMIEATKGINSY 546
Query: 340 YVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
Y++SDG YR +R PS H ++ + ++ G+ I+D+ V L S+D D+DR
Sbjct: 547 YLISDGGTMSYRTRIRTPSFPH-LQQIPSVIRGSLISDLIVYLGSIDFVMSDVDR 600
>gi|11466021 NADH dehydrogenase 49kD subunit [Nicotiana tabacum]
>gi|128838|sp|P12133|NUCC_TOBAC NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KD SUBUNIT, CHLOROPLAST (ORF 393)
>gi|82215|pir||A05216 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 393 - common tobacco chloroplast
>gi|1223674|emb|CAA77398.1| (Z00044) NADH dehydrogenase
49kD subunit [Nicotiana tabacum]
>gi|225262|prf||1211235CX ORF 393 [Nicotiana tabacum]
Length = 393
Score = 202 bits (508), Expect = 7e-51
Identities = 128/389 (32%), Positives = 208/389 (52%), Gaps = 23/389 (5%)
Query: 26 KDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALL 84
KD + GPQH + +I+ +DG VV G+LHRG EK+AE R + +
Sbjct: 8 KDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYLPYV 67
Query: 85 LRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGV 144
R + EAI +++ +VP+RA +IR +LE++R++++L W+ +G
Sbjct: 68 TRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGA 127
Query: 145 YTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKL 204
T + RE + LFE TG R+ H Y GGV D+P W+ + D +Y + +
Sbjct: 128 QTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYG-WIDKCLDFCDYFLTGV 186
Query: 205 PDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELD 264
++ L+ N I R+EG+G++ AL G++GP LRA+G+ +D+RK D Y Y E D
Sbjct: 187 AEYQKLITRNPIFLERVEGVGIIGGDEALNWGLSGPMLRASGIEWDLRKVDHYESYDEFD 246
Query: 265 FEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPY---------KVEDPR--- 312
++V REGD+LAR LVR E+ + + I++Q LE G P GPY +++DP
Sbjct: 247 WQVQWQREGDSLARYLVRIGEMTESIKIIQQALE-GIPGGPYENLEIRRFDRLKDPEWND 305
Query: 313 -------LKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRV 365
K P F++ + + VE+ KG+ G +++ D S P+R +R P + +++
Sbjct: 306 FEYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFIN-LQI 364
Query: 366 LEQLLVGARIADVPVILMSLDNCPPDIDR 394
L QL+ ++AD+ IL S+D ++DR
Sbjct: 365 LPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|11466215 NADH dehydrogenase subunit 7 [Naegleria gruberi]
>gi|10444250|gb|AAG17816.1|AF288092_41 (AF288092) NADH
dehydrogenase subunit 7 [Naegleria gruberi]
Length = 395
Score = 201 bits (507), Expect = 9e-51
Identities = 131/393 (33%), Positives = 206/393 (52%), Gaps = 25/393 (6%)
Query: 25 EKDTYELF---FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTN 80
+K T+ F FGPQH A +I+++DG + A + G LHRG EKL EY+ +
Sbjct: 5 KKQTFNNFILNFGPQHPAAHGVLRLIVELDGEIIKNADPHIGLLHRGTEKLLEYKTYIQG 64
Query: 81 IALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSF 140
+ R+ E Y LA++ ++ EVP RAQ+IR E+ R+ +L I +
Sbjct: 65 LPYFDRLDYVSMMCQEHTYCLAIERLLKCEVPLRAQYIRVLFSEITRLLNHLLSITTHAM 124
Query: 141 KLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYI 200
+G T WA RE+LM +E ++GAR++ Y PGGV D+P L + D +
Sbjct: 125 DVGALTPFLWAFEEREKLMEFYERVSGARMHANYFRPGGVSYDLP-KGLLHDIYDFIYSF 183
Query: 201 KSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLY 260
S++ + + L+ N I +R+ IGV++ + AL G TG LR +G+ +D+RK +PY +Y
Sbjct: 184 ASRIDEMEELLTTNRIWKQRLVDIGVVNYRDALDMGFTGVMLRGSGIPWDLRKCEPYEIY 243
Query: 261 PELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPS----GPYKVEDPRLKNL 316
+L+F +P GD R LVR E+ Q + I+ Q L P +K+ P K +
Sbjct: 244 KQLNFYIPVGIYGDCYDRYLVRMSEMRQSISIIHQCLNKIPNGLVRVDNHKITPPYRKQI 303
Query: 317 P--------RFK-------VPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAH 361
FK VP G ++ VE+ KG+ GA +VS+GS+ PYR +R P AH
Sbjct: 304 KTSMESLIHHFKFYSEGINVPQGISYGGVEAPKGETGALLVSNGSNMPYRCKIRSPGYAH 363
Query: 362 GIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
++ + ++ G IAD+ ++ +LD ++DR
Sbjct: 364 -LQGINHVISGHMIADLVTVIGTLDIVFGEVDR 395
>pir||D83316 NADH dehydrogenase I chain C,D PA2639 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948707|gb|AAG06027.1|AE004692_6 (AE004692) NADH
dehydrogenase I chain C,D [Pseudomonas aeruginosa]
Length = 593
Score = 201 bits (506), Expect = 1e-50
Identities = 131/418 (31%), Positives = 212/418 (50%), Gaps = 29/418 (6%)
Query: 3 LMVTQEELIREARRN-----GMELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVK 56
L +++L +EA R GM+ + +D L GP H + F IIL++DG ++
Sbjct: 179 LSAAKQDLEQEALRFKPEDWGMKRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIID 238
Query: 57 AIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQ 116
+ G+ HRG EK+AE + W++ I RI + Y L+V+++ G +VP+R
Sbjct: 239 CVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVD 298
Query: 117 WIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTI 176
IR + E R+ +L ++ +G T + R+R ++ E +TG R++ +
Sbjct: 299 VIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYR 358
Query: 177 PGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEG 236
GGV D+P W + +++ ++++ +L +++ +N I R G+ + K AL G
Sbjct: 359 IGGVAHDLPRG-WDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWG 417
Query: 237 VTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQL 296
TG LRATG +D+RK PY Y +FEVP GDA R +V+ E+ Q L I+EQ
Sbjct: 418 TTGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQC 477
Query: 297 LEMGPPSGPYKVEDPRLKNLPRFK--------------------VPAGDAFAHVESTKGD 336
L+ P GPYK + P P+ + +PA +AF +E+TKG
Sbjct: 478 LK-NMPEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGI 536
Query: 337 FGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
Y+ SDGS YR +R PS AH ++ + ++ G+ IAD+ L S+D D+DR
Sbjct: 537 NSYYLTSDGSTMSYRTRIRTPSFAH-LQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
>sp|Q9PM99|NUOD_CAMJE NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|11254570|pir||F81252 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain D Cj1576c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968993|emb|CAB73564.1| (AL139079) NADH
dehydrogenase I chain D [Campylobacter jejuni]
Length = 408
Score = 201 bits (505), Expect = 2e-50
Identities = 125/383 (32%), Positives = 200/383 (51%), Gaps = 24/383 (6%)
Query: 34 GPQHMATE-NFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPES 92
GPQH + N +IL++DG +VVKA G++HRG EK+AE + I R+ +
Sbjct: 28 GPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAA 87
Query: 93 DVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWAA 152
Y AV+++ G E+P RA IR +LE+ R++++L W+ + +G + +
Sbjct: 88 SANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCF 147
Query: 153 AYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVF 212
RE ++ L E+ GAR+ H GGV D+P + +L ++ + + L D+++L+
Sbjct: 148 REREYVLDLIEKYCGARLTHSSMRIGGVMLDLP-ENYLEEMLAFCDKFPNDLKDYEDLLD 206
Query: 213 ENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLRE 272
+N I R E +GV+ K+ AL G TG LR +G+ YD+RK++PYLLY E++F VP +
Sbjct: 207 DNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQ 266
Query: 273 GDALARALVRRYELEQDLYILEQLLEMGPPSGP---------------------YKVEDP 311
GD+ AR V E + L IL Q + + P Y +
Sbjct: 267 GDSYARYKVYMQEFRESLKILRQCAMLYKDTSPEILATHPEYVSASKEQILTQNYSLMQH 326
Query: 312 RLKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLV 371
+ K P G+ + ES KG+ G ++ SDG+ +PYR+ R PS H E++LV
Sbjct: 327 FVLITQGLKPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWH-CAFFEEMLV 385
Query: 372 GARIADVPVILMSLDNCPPDIDR 394
G +ADV I+ +++ +IDR
Sbjct: 386 GTYLADVVAIMGNVNIVLGEIDR 408
>emb|CAA48363.1| (X68301) NADH dehydrogenase I, subunit nuoD [Escherichia coli]
Length = 407
Score = 201 bits (505), Expect = 2e-50
Identities = 131/399 (32%), Positives = 205/399 (50%), Gaps = 25/399 (6%)
Query: 18 GMELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRP 76
GM+ +D L GP H + F I+L++DG +V + + G+ HRG EK+ E +
Sbjct: 12 GMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 71
Query: 77 WYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIM 136
W++ I RI V E Y LAV+++ G VP+R IR + E+ R++++L +I
Sbjct: 72 WHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIS 131
Query: 137 GLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDT 196
+G T +A R+++ L E +TG R++ + GGV D+P W R L++
Sbjct: 132 TFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVADDLPRG-WDRLLREF 190
Query: 197 VEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDP 256
++++ +L ++ +N I R +G+ M +K AL G TG LRATG+ +DVRK P
Sbjct: 191 LDWMPKRLASYEKAALQNTILKGRSQGVAPMARKEALEWGTTGAGLRATGIDFDVRKARP 250
Query: 257 YLLYPELDFEVPT-LREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKN 315
Y Y DFE+P D R +++ EL Q L ILEQ L P GP+K + P
Sbjct: 251 YSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLN-NMPEGPFKRDHPLTTP 309
Query: 316 LPRFK--------------------VPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVR 355
P+ + +PA ++F +E+TKG Y+ SDGS YR VR
Sbjct: 310 PPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVR 369
Query: 356 GPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
PS AH ++ + + G+ ++D+ V L S+D D+DR
Sbjct: 370 TPSFAH-LQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 407
>pir||D65000 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I, chain C-D -
Escherichia coli >gi|1788622|gb|AAC75346.1| (AE000317)
NADH dehydrogenase I chain C, D [Escherichia coli K12]
Length = 600
Score = 200 bits (504), Expect = 2e-50
Identities = 130/399 (32%), Positives = 203/399 (50%), Gaps = 25/399 (6%)
Query: 18 GMELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRP 76
GM+ +D L GP H + F I+L++DG +V + + G+ HRG EK+ E +
Sbjct: 205 GMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 264
Query: 77 WYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIM 136
W++ I RI V E Y LAV+++ G VP+R IR + E+ R++++L +I
Sbjct: 265 WHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIS 324
Query: 137 GLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDT 196
+G T +A R+++ L E +TG R++ + GGV D+P W R L++
Sbjct: 325 TFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRG-WDRLLREF 383
Query: 197 VEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDP 256
++++ +L ++ +N I R +G+ K AL G TG LRATG+ +DVRK P
Sbjct: 384 LDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARP 443
Query: 257 YLLYPELDFEVPT-LREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKN 315
Y Y DFE+P D R +++ EL Q L ILEQ L P GP+K + P
Sbjct: 444 YSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLN-NMPEGPFKADHPLTTP 502
Query: 316 LPRFK--------------------VPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVR 355
P+ + +PA ++F +E+TKG Y+ SDGS YR VR
Sbjct: 503 PPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVR 562
Query: 356 GPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
PS AH ++ + + G+ ++D+ V L S+D D+DR
Sbjct: 563 TPSFAH-LQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>dbj|BAA16115.1| (D90859) NADH DEHYDROGENASE I CHAIN D (EC 1.6.5.3) (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4) (NUO4). [Escherichia coli]
>gi|1799653|dbj|BAA16120.1| (D90860) NADH DEHYDROGENASE
I CHAIN D (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN 4) (NUO4). [Escherichia coli]
Length = 407
Score = 200 bits (504), Expect = 2e-50
Identities = 130/399 (32%), Positives = 203/399 (50%), Gaps = 25/399 (6%)
Query: 18 GMELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRP 76
GM+ +D L GP H + F I+L++DG +V + + G+ HRG EK+ E +
Sbjct: 12 GMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 71
Query: 77 WYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIM 136
W++ I RI V E Y LAV+++ G VP+R IR + E+ R++++L +I
Sbjct: 72 WHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIS 131
Query: 137 GLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDT 196
+G T +A R+++ L E +TG R++ + GGV D+P W R L++
Sbjct: 132 TFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRG-WDRLLREF 190
Query: 197 VEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDP 256
++++ +L ++ +N I R +G+ K AL G TG LRATG+ +DVRK P
Sbjct: 191 LDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARP 250
Query: 257 YLLYPELDFEVPT-LREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKN 315
Y Y DFE+P D R +++ EL Q L ILEQ L P GP+K + P
Sbjct: 251 YSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLN-NMPEGPFKADHPLTTP 309
Query: 316 LPRFK--------------------VPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVR 355
P+ + +PA ++F +E+TKG Y+ SDGS YR VR
Sbjct: 310 PPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVR 369
Query: 356 GPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
PS AH ++ + + G+ ++D+ V L S+D D+DR
Sbjct: 370 TPSFAH-LQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 407
>gi|11467261 NADH dehydrogenase 49KDa protein [Zea mays]
>gi|128833|sp|P25709|NUCC_MAIZE NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KD SUBUNIT, CHLOROPLAST
>gi|100954|pir||S13600 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) 49K chain - maize chloroplast
>gi|14301|emb|CAA39868.1| (X56521) ndhH subunit of NADH
dehydrogenase [Zea mays] >gi|902290|emb|CAA60354.1|
(X86563) NADH dehydrogenase 49KDa protein [Zea mays]
Length = 393
Score = 200 bits (503), Expect = 3e-50
Identities = 128/396 (32%), Positives = 210/396 (52%), Gaps = 23/396 (5%)
Query: 19 MELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPW 77
M L KD + GPQH + +I+ +DG V+ G+LHRG EK+AE R
Sbjct: 1 MSLSLKRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRSI 60
Query: 78 YTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMG 137
+ + R + EAI A + + ++P+RA +IR +LE++R++++L W+
Sbjct: 61 IQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPKRASYIRVIMLELSRIASHLLWLGP 120
Query: 138 LSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTV 197
LG T + RE + LFE +TG R+ H Y GGV D+P W+ + D
Sbjct: 121 FMADLGAQTPFFYIFRERELIYDLFEAVTGMRMMHNYFRIGGVAADLPYG-WMDKCLDFC 179
Query: 198 EYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPY 257
+Y + ++ L+ +N I R+EG+G + + A+ G++GP LRA+G+ +D+RK DPY
Sbjct: 180 DYFLQGVVEYQELITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPY 239
Query: 258 LLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPY---------KV 308
Y + D++V +EGD+LAR LVR E+ + + I++Q +E P GPY K
Sbjct: 240 ESYNQFDWKVQWQKEGDSLARYLVRVGEMRESIKIIQQAVEK-IPGGPYENLEARRFKKA 298
Query: 309 EDPR----------LKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPS 358
++P K P F++ + + VE+ KG+ G Y+V D S P+R +R P
Sbjct: 299 KNPEWNDFEYRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPG 358
Query: 359 IAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
+ +++L QL+ ++AD+ IL S+D ++DR
Sbjct: 359 FIN-LQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>sp|Q9TC96|NUCM_NEPOL NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|6066183|gb|AAF03201.1|AF110138_33
(AF110138) NADH dehydrogenase subunit 7 [Nephroselmis
olivacea]
Length = 398
Score = 200 bits (503), Expect = 3e-50
Identities = 122/387 (31%), Positives = 203/387 (51%), Gaps = 24/387 (6%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ L FGPQH A ++L+++G V +A + G LHRG EKL EY+ + + R+
Sbjct: 15 FTLNFGPQHPAAHGVLRLVLELNGEVVARADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 74
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E YSLAV++++ EVPERAQ+IR E+ R+ +L + + +G T
Sbjct: 75 DYVSMMCQEHAYSLAVEKLLHCEVPERAQYIRVLFSEITRILNHLLALTTHAMDVGALTP 134
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDF 207
WA RE+L+ +E ++G+R++ Y PGGV D+P + + + S++ +
Sbjct: 135 FLWAFEEREKLIEFYERVSGSRMHAAYIRPGGVACDLPAN-LCEDIYLFCQQFASRIDEM 193
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
+ ++ N I +R+ IG++ + A A G +G LR +GVA+D+RK PY +Y + F+V
Sbjct: 194 EEMLTNNRIWKQRLVDIGIVTAENAFAWGFSGVLLRGSGVAWDLRKTQPYDVYNRMIFDV 253
Query: 268 PTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR--------- 318
P +GD R L R E+ Q ++I+ Q L P G K +D ++ R
Sbjct: 254 PVGTQGDCYDRYLCRVEEMRQSIHIIMQCLNQ-LPKGMIKADDKKITPPSRSQMKQSMES 312
Query: 319 -----------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLE 367
+ VP + + VE+ KG+FG Y+VS+G+++PYR +R P H ++ L+
Sbjct: 313 LIHHFKLFTEGYTVPNSETYTSVEAPKGEFGVYLVSNGTNRPYRCKIRAPGFLH-LQGLD 371
Query: 368 QLLVGARIADVPVILMSLDNCPPDIDR 394
+ +ADV I+ + D ++DR
Sbjct: 372 MMSKNHMLADVVTIIGTQDIVFGEVDR 398
>pir||S46437 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7 - wheat
mitochondrion
Length = 394
Score = 199 bits (502), Expect = 3e-50
Identities = 126/387 (32%), Positives = 201/387 (51%), Gaps = 24/387 (6%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ L FGPQH A ++L+M+G V +A + G LHRG EKL EY+ + + R+
Sbjct: 11 FTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRL 70
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E YSLAV+ ++ EVP RAQ+IR E+ R+ +L + + +G T
Sbjct: 71 DYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTP 130
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDF 207
WA RE+L+ +E ++GAR++ + PGGV +D+P R + + S++ +
Sbjct: 131 FLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLG-LCRDIDSFTQQFASRIDEL 189
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
+ ++ N I +R+ IG + + A G +G LR +GV +D+R+ PY +Y +LDF+V
Sbjct: 190 EEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRRAAPYDVYDQLDFDV 249
Query: 268 PTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR--------- 318
P GD R +R E+ Q + I+ Q L PSG K +D +L R
Sbjct: 250 PVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQ-MPSGMIKADDRKLCPPSRSRMKLSMES 308
Query: 319 -----------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLE 367
F VPA + VE+ KG+FG ++VS+GS++PYR +R P AH ++ L+
Sbjct: 309 LIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAH-LQGLD 367
Query: 368 QLLVGARIADVPVILMSLDNCPPDIDR 394
+ +ADV I+ + D ++DR
Sbjct: 368 FMSKHHMLADVVTIIGTQDIVFGEVDR 394
>sp|P95178|NUOD_MYCTU NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|7432633|pir||E70647 probable nuoD protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|1781220|emb|CAB06291.1| (Z83867) nuoD [Mycobacterium
tuberculosis]
Length = 440
Score = 199 bits (502), Expect = 3e-50
Identities = 126/400 (31%), Positives = 205/400 (50%), Gaps = 42/400 (10%)
Query: 34 GPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPES 92
GPQH +T +IL+++G VV+A G+LH G EK EYR W + + R+
Sbjct: 44 GPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSP 103
Query: 93 DVPEAIYSLAVDEIIGW--EVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQW 150
E Y L V++++G E+PER IR ++E+ R+S++L + +LG T
Sbjct: 104 FFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAMTPMFV 163
Query: 151 AAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNL 210
RE ++ LFE++TG R+ Y PGGV +D+P + ++ + ++ ++ L + L
Sbjct: 164 GFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNA-ATEIAEALKQLRQPLREMGEL 222
Query: 211 VFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTL 270
+ EN I R +G+G +D +A G+TGP LR+TG+ +D+RK +PY Y +F+V T
Sbjct: 223 LNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFDVITD 282
Query: 271 REGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLK-------------NLP 317
DA R ++R E+ + + I+EQ L+ P GP + D +L N P
Sbjct: 283 DSCDAYGRYMIRVKEMWESMKIVEQCLDKLRP-GPTMISDRKLAWPADLQVGPDGLGNSP 341
Query: 318 R-----------------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHV 354
+ +VPAG + VES +G+ G ++VSDG +PYRVH
Sbjct: 342 KHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMVSDGGTRPYRVHY 401
Query: 355 RGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
R PS + ++ + + G +AD+ + S+D +DR
Sbjct: 402 RDPSFTN-LQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 440
>gi|11499418 F420H2:quinone oxidoreductase, 45 kDa subunit (nuoD) [Archaeoglobus
fulgidus] >gi|2648715|gb|AAB89420.1| (AE000976)
F420H2:quinone oxidoreductase, 45 kDa subunit (nuoD)
[Archaeoglobus fulgidus]
Length = 413
Score = 199 bits (501), Expect = 5e-50
Identities = 124/378 (32%), Positives = 197/378 (51%), Gaps = 12/378 (3%)
Query: 27 DTYELFFGPQHMATENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLR 86
D + + GPQH + + +I+++ G+ + + I +PG++HR EKLAE R + NI L+ R
Sbjct: 38 DDFLVLVGPQHPGSGHMRLIVRVRGDIIQEVIPDPGYVHRSMEKLAENRLYIQNIPLVER 97
Query: 87 ICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYT 146
+ ++ Y A++E + EVPERA+++RT + E+ RV +L+ L+ LG T
Sbjct: 98 PAIMDAPNFNLGYVRAIEEALDIEVPERAKFLRTMLAELGRVGTHLYDAAILAVFLGHTT 157
Query: 147 AGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPD 206
+ RE + LTGAR + IPGGVRRD D L+ + D ++ +L
Sbjct: 158 GFMYPFGLRELICEALVRLTGARFTSSFIIPGGVRRD-ADDATLKWIYDMTLAMERRLKS 216
Query: 207 FDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFE 266
F+ + N R++ +GV+ K+ A+ GV GP LRA+GV YDVRK +PY Y +L +E
Sbjct: 217 FERIFINNPTVIARLQDVGVLSKEEAIKYGVVGPFLRASGVEYDVRKVEPYEAYDDLTWE 276
Query: 267 VPTLREGDALARALVRRYELEQDLYILEQLLEMGP---------PSGPYKVEDPRLKNLP 317
+P GD AR LVR E+ Q L I+ Q ++ P + +L
Sbjct: 277 MPVSDAGDGYARFLVRVNEVGQSLSIIRQCIKEMPEGRVISEQVAENEKDIRGSFFDSLS 336
Query: 318 RFKVPAGDAFAHVESTKGDFGAYVVSDG-SHKPYRVHVRGPSIAHGIRVLEQLLVGARIA 376
+P+G+ E +G ++SDG S+ PYR+ + P + +R + + G R+A
Sbjct: 337 NIVLPSGEYTTLTEGARGTIIYSIISDGESNVPYRLRIVSPGWLY-LRGFMESMKGERLA 395
Query: 377 DVPVILMSLDNCPPDIDR 394
D+ I S PP+ DR
Sbjct: 396 DLQAIYGSFGYFPPEADR 413
>sp|O98691|NUCC_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT, CHLOROPLAST
>gi|4150868|emb|CAA09811.1| (AJ011848) ndhH protein
[Hordeum vulgare]
Length = 393
Score = 199 bits (501), Expect = 5e-50
Identities = 127/396 (32%), Positives = 209/396 (52%), Gaps = 23/396 (5%)
Query: 19 MELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPW 77
M L +KD + GPQH + +I+ +DG V+ G+LHRG EK+AE R
Sbjct: 1 MSLPLTKKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60
Query: 78 YTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMG 137
+ + R + EAI A + + ++P+RA +IR +LE++R++++L W+
Sbjct: 61 IQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGP 120
Query: 138 LSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTV 197
LG T + RE + LFE TG R+ H Y GGV D+P W+ + D
Sbjct: 121 FMADLGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYG-WIDKCLDFC 179
Query: 198 EYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPY 257
+Y + ++ L+ +N I R+EG+G + + A+ G++GP LRA+G+ +D+RK DPY
Sbjct: 180 DYFLRGVVEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPY 239
Query: 258 LLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPR----- 312
Y + D++V +EGD+LAR LVR E+ + + I++Q +E P GPY+ + R
Sbjct: 240 ESYNQFDWKVQWQKEGDSLARYLVRVGEMSESIKIIQQAIEK-IPGGPYENLEVRRFKKE 298
Query: 313 --------------LKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPS 358
K P F++ + + VE+ KG+ G Y+V D S P+R +R P
Sbjct: 299 KNSEWNDFEYKFLGKKPSPNFELSRQELYVRVEAPKGELGIYLVGDDSLFPWRWKIRPPG 358
Query: 359 IAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
+ +++L QL+ ++AD+ IL S+D ++DR
Sbjct: 359 FIN-LQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>pir||E69478 coenzyme F420--quinone oxidoreductase (EC 1.6.5.-) 45K chain nuoD -
Archaeoglobus fulgidus
Length = 410
Score = 199 bits (501), Expect = 5e-50
Identities = 124/378 (32%), Positives = 197/378 (51%), Gaps = 12/378 (3%)
Query: 27 DTYELFFGPQHMATENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLR 86
D + + GPQH + + +I+++ G+ + + I +PG++HR EKLAE R + NI L+ R
Sbjct: 35 DDFLVLVGPQHPGSGHMRLIVRVRGDIIQEVIPDPGYVHRSMEKLAENRLYIQNIPLVER 94
Query: 87 ICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYT 146
+ ++ Y A++E + EVPERA+++RT + E+ RV +L+ L+ LG T
Sbjct: 95 PAIMDAPNFNLGYVRAIEEALDIEVPERAKFLRTMLAELGRVGTHLYDAAILAVFLGHTT 154
Query: 147 AGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPD 206
+ RE + LTGAR + IPGGVRRD D L+ + D ++ +L
Sbjct: 155 GFMYPFGLRELICEALVRLTGARFTSSFIIPGGVRRD-ADDATLKWIYDMTLAMERRLKS 213
Query: 207 FDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFE 266
F+ + N R++ +GV+ K+ A+ GV GP LRA+GV YDVRK +PY Y +L +E
Sbjct: 214 FERIFINNPTVIARLQDVGVLSKEEAIKYGVVGPFLRASGVEYDVRKVEPYEAYDDLTWE 273
Query: 267 VPTLREGDALARALVRRYELEQDLYILEQLLEMGP---------PSGPYKVEDPRLKNLP 317
+P GD AR LVR E+ Q L I+ Q ++ P + +L
Sbjct: 274 MPVSDAGDGYARFLVRVNEVGQSLSIIRQCIKEMPEGRVISEQVAENEKDIRGSFFDSLS 333
Query: 318 RFKVPAGDAFAHVESTKGDFGAYVVSDG-SHKPYRVHVRGPSIAHGIRVLEQLLVGARIA 376
+P+G+ E +G ++SDG S+ PYR+ + P + +R + + G R+A
Sbjct: 334 NIVLPSGEYTTLTEGARGTIIYSIISDGESNVPYRLRIVSPGWLY-LRGFMESMKGERLA 392
Query: 377 DVPVILMSLDNCPPDIDR 394
D+ I S PP+ DR
Sbjct: 393 DLQAIYGSFGYFPPEADR 410
>gb|AAG23656.1|AF288091_1 (AF288091) NADH dehydrogenase subunit 7 [Thraustochytrium aureum]
Length = 397
Score = 199 bits (500), Expect = 6e-50
Identities = 126/391 (32%), Positives = 201/391 (51%), Gaps = 24/391 (6%)
Query: 25 EKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIAL 83
E + L FGPQH A ++L++DG V KA + G LHRG EKL E + + +
Sbjct: 10 EIQAFTLNFGPQHPAAHGVLRLVLELDGEVVRKADPHVGLLHRGTEKLVEQKTYLQALPY 69
Query: 84 LLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLG 143
R+ E YS+ V+ ++ +P R+Q+IR LE+ R+ +L + + +G
Sbjct: 70 FDRLDYVSIIAQEHTYSIGVETLLDLSIPLRSQFIRVIFLEITRILNHLLAVSCHALDVG 129
Query: 144 VYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSK 203
T W RE+L+ +E ++GAR++ Y PGGV DIP L + E K +
Sbjct: 130 AITPFFWGFEEREKLIEFYERVSGARMHAAYVRPGGVSFDIP-KGLLNDIFYFCESFKVR 188
Query: 204 LPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPEL 263
L +F+ L+ N I +R+ IGV+ + G +G LR +G+ +D+R++ PY +Y +L
Sbjct: 189 LDEFEELLTNNRIWKQRLVNIGVVSAADSKNWGFSGVMLRGSGIPWDLRQNFPYEVYNQL 248
Query: 264 DFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGP-----YKVEDPRLKNLPR 318
FE+P GD R L+R E+ Q + I+ Q + + P GP YK +P K +
Sbjct: 249 SFEIPVGSNGDCYDRYLIRIEEIRQSISIIVQAINL-MPEGPVKSFNYKFSNPSKKMMKN 307
Query: 319 ---------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGI 363
F V G+ + E+ KG+FG ++VSDGS+KPYR ++ P +H +
Sbjct: 308 SIEALIHHFKYFTEGFPVNRGEVYVATEAPKGEFGVFLVSDGSNKPYRCKIKAPGFSH-L 366
Query: 364 RVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
+ L+ + G IADV I+ + D ++DR
Sbjct: 367 QGLDFMSKGHLIADVVTIIGTQDIVFGEVDR 397
>sp|Q93873|NUCM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT PRECURSOR
(COMPLEX I-49KD) (CI-49KD) >gi|7505618|pir||T23532
hypothetical protein K09A9.5 - Caenorhabditis elegans
>gi|3878424|emb|CAB01886.1| (Z79601) predicted using
Genefinder~Similarity to Bovine NADH-ubiquinone
oxidoreductase 49 KD subunit (SW:NUCM_BOVIN), contains
similarity to Pfam domain: PF00346 (Respiratory-chain
NADH dehydrogenase, 49 Kd subunit), Score=595.8,
E-value=6.4e-215, N=1>
Length = 482
Score = 198 bits (499), Expect = 8e-50
Identities = 121/385 (31%), Positives = 202/385 (52%), Gaps = 24/385 (6%)
Query: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
L FGPQH A ++LK++G ++KAI + G LHR EKL E++ + + R+
Sbjct: 101 LNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQALPYFDRLDY 160
Query: 90 PESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQ 149
E +SLAV++++G ++P RA++IRT + E+ R+ ++ I + +G T
Sbjct: 161 VSMMCNEQAWSLAVEKLLGIDIPTRAKYIRTLMGELTRIQNHIMGITTHALDVGAMTPFF 220
Query: 150 WAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDN 209
W RE+L E ++GAR++ Y PGGV D+P + + D ++ + ++
Sbjct: 221 WMFEEREKLFEFSERVSGARMHANYVRPGGVAWDLP-IGLMDDIYDWAIKFPERIDELED 279
Query: 210 LVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPT 269
++ EN I R IG++ AL G +G +R +G+ DVRK +PY Y +++F+VP
Sbjct: 280 MLTENRIWKARTIDIGLVSAADALNWGFSGVMVRGSGIKQDVRKTEPYDAYADMEFDVPI 339
Query: 270 LREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR----------- 318
+GD R L R E+ Q L I+ Q L P+G KV+D ++ R
Sbjct: 340 GTKGDCYDRYLCRIEEMRQSLNIVHQCLNK-MPAGEIKVDDHKVVPPKRAEMKENMESLI 398
Query: 319 ---------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQL 369
F+VP G + +E+ KG+FG Y+V+DG+ KPYR +R P AH + + +
Sbjct: 399 HHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGTGKPYRCFIRAPGFAH-LAAIHDV 457
Query: 370 LVGARIADVPVILMSLDNCPPDIDR 394
+ IAD+ ++ ++D ++DR
Sbjct: 458 CYMSLIADIVAVIGTMDIVFGEVDR 482
>gi|11466444 49 kDa subunit of NADH-plastoquinone [Mesostigma viride]
>gi|7259587|gb|AAF43888.1|AF166114_100 (AF166114) 49 kDa
subunit of NADH-plastoquinone [Mesostigma viride]
Length = 391
Score = 198 bits (499), Expect = 8e-50
Identities = 124/388 (31%), Positives = 205/388 (51%), Gaps = 23/388 (5%)
Query: 27 DTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLL 85
D + GP H + +I+ +DG V+ G+LHR EK+AE R + +
Sbjct: 7 DPMVISMGPHHPSMHGVLRLIVTLDGENVIDCEPVLGYLHRAMEKIAENRTIVQYLPYVT 66
Query: 86 RICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVY 145
R + EAI A +++ EVP+RA +IR +LE++R++++L W+ +G
Sbjct: 67 RWDYLATMFTEAITVNAPEKLANIEVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQ 126
Query: 146 TAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLP 205
T + RE + LFE TG R+ H Y GGV D+P W+ + D +Y K+
Sbjct: 127 TPFFYILREREMIYDLFEAATGMRMMHNYFRIGGVASDLPYG-WVDKCLDFSDYFLPKVD 185
Query: 206 DFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDF 265
+++ L+ N I +R+ +G + ++ A+ G++GP LRA+GV +D+RK D Y Y ELD+
Sbjct: 186 EYERLITNNPIFLKRVRDVGFISREEAINWGLSGPMLRASGVQWDLRKVDNYECYGELDW 245
Query: 266 EVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYK-VEDPRL----------- 313
V +GD LAR LVR E+ + I++Q L+ P GPY+ +E RL
Sbjct: 246 NVQWQSDGDCLARYLVRLGEMRESTKIIQQALK-AIPGGPYENLEARRLSKGRKSEWNNF 304
Query: 314 -------KNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVL 366
K P FK+P + + VE+ KG+ G +++ D + P+R +R P + +++L
Sbjct: 305 EYQFVGKKPSPTFKIPKQEHYVRVEAPKGELGVFLMGDDNVFPWRWKIRSPGFIN-VQIL 363
Query: 367 EQLLVGARIADVPVILMSLDNCPPDIDR 394
+L+ G ++AD+ IL S+D ++DR
Sbjct: 364 PELVRGMKLADIMTILGSIDIIMGEVDR 391
>gb|AAF97800.1|AF281148_4 (AF281148) NADH dehydrogenase I subunit D [Pseudomonas fluorescens]
Length = 409
Score = 198 bits (498), Expect = 1e-49
Identities = 124/398 (31%), Positives = 201/398 (50%), Gaps = 24/398 (6%)
Query: 18 GMELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRP 76
GM+ +D L GP H + F IIL++DG +V + + G+ HRG EK+AE +
Sbjct: 15 GMKRSGANEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQS 74
Query: 77 WYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIM 136
W++ I RI + Y L+V+++ G +VPE+ IR + E R++++L ++
Sbjct: 75 WHSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLG 134
Query: 137 GLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDT 196
+G T + R++ + E +TG R++ + GGV D+P W + +KD
Sbjct: 135 TYIQDVGAMTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRG-WEKLVKDF 193
Query: 197 VEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDP 256
VE++ +L ++ +N I R G+ + K AL GVTG LR+TG +D+RK P
Sbjct: 194 VEWMPKRLDEYTKAALQNSILKGRTIGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARP 253
Query: 257 YLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNL 316
Y Y +FEVP GDA R +VR E+ Q + I++Q + P GPYK + P
Sbjct: 254 YSGYENFEFEVPLAANGDAYDRCMVRVEEMRQSIKIIDQCMR-NMPEGPYKADHPLTTPP 312
Query: 317 PRFK--------------------VPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRG 356
P+ + +PA ++F +E+TKG Y+ SDG YR +R
Sbjct: 313 PKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRT 372
Query: 357 PSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
PS H ++ + ++ G+ +AD+ L S+D D+DR
Sbjct: 373 PSYPH-LQQIPSVIKGSMVADLIAYLGSIDFVMADVDR 409
>dbj|BAB18862.1| (AB035479) NADH dehydrogenase [Physcomitrella patens]
Length = 393
Score = 198 bits (498), Expect = 1e-49
Identities = 128/390 (32%), Positives = 202/390 (50%), Gaps = 30/390 (7%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ L FGPQH A ++L+M+G V +A + G LHRG EKL EY+ + + R+
Sbjct: 10 FTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRL 69
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E YSLAV+++ EVP RAQ+IR E+ R+ +L + + +G T
Sbjct: 70 DYVSMMAQEHAYSLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTP 129
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDT---VEYIKSKL 204
WA RE+L+ +E ++GAR++ Y PGGV +D+P L +D + S++
Sbjct: 130 FLWAFEEREKLLEFYERVSGARMHASYIRPGGVAQDMP----LGLSEDIFLFTQQFASRI 185
Query: 205 PDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELD 264
+ + ++ N I +R+ IG + + AL G +G LR +GV +D+RK PY +Y +L
Sbjct: 186 DEIEEMLTNNRIWKQRLVDIGTVTAQQALDWGFSGVMLRGSGVCWDLRKSAPYDVYNQLS 245
Query: 265 FEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR------ 318
F+VP GD R +R E+ Q + I+ Q L PSG K +D +L R
Sbjct: 246 FDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQCLNQ-MPSGMIKADDRKLCPPSRSQMKQS 304
Query: 319 --------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIR 364
F VPA + VE+ KG+FG ++VS+G+++PYR +R P AH ++
Sbjct: 305 MESLIHHFKLYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGTNRPYRCKIRAPGFAH-LQ 363
Query: 365 VLEQLLVGARIADVPVILMSLDNCPPDIDR 394
L+ + +ADV I+ + D ++DR
Sbjct: 364 GLDFMSKHHMLADVVTIIGTQDIVFGEVDR 393
>gb|AAF59336.1| (AE003843) CG1970 gene product [Drosophila melanogaster]
Length = 452
Score = 198 bits (497), Expect = 1e-49
Identities = 125/395 (31%), Positives = 202/395 (50%), Gaps = 42/395 (10%)
Query: 23 PIEKDTYELF--FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYT 79
P+EK L FGPQH A ++L++DG V++A + G LHRG EKL EY+ +
Sbjct: 77 PVEKSVRNLTLNFGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQ 136
Query: 80 NIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLS 139
+ R+ E YSLAV++++ +VP RA++IRT E+ R+ ++ + +
Sbjct: 137 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHA 196
Query: 140 FKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEY 199
+G T W RE++M +E ++GAR++ Y PGG V
Sbjct: 197 LDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGG-----------------VSL 239
Query: 200 IKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLL 259
+L + ++++ N I +R E IG++ + AL G +G LR +G+ +D+RK PY
Sbjct: 240 FAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVMLRGSGIKWDLRKQQPYDA 299
Query: 260 YPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR- 318
Y ++F+VP +GD R L R E+ Q L I++Q L P+G K +D ++ R
Sbjct: 300 YNLVNFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQ-MPAGEIKTDDAKVAPPSRS 358
Query: 319 -------------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSI 359
++VP G + +E+ KG+FG Y++SDGS +PYR ++ P
Sbjct: 359 EMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLISDGSSRPYRCKIKAPGF 418
Query: 360 AHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
AH + LE++ +ADV I+ +LD +IDR
Sbjct: 419 AH-LAALEKIGKQHMLADVVAIIGTLDVVFGEIDR 452
>pir||T34389 hypothetical protein T26A5.3 - Caenorhabditis elegans
>gi|470339|gb|AAC77506.1| (U00043) similar to
NADH-ubiquinone oxidoreductase [Caenorhabditis elegans]
Length = 474
Score = 197 bits (496), Expect = 2e-49
Identities = 123/404 (30%), Positives = 204/404 (50%), Gaps = 34/404 (8%)
Query: 23 PIEKDTYE------------LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFE 69
P+ D YE L FGPQH A ++LK++G ++KAI + G LHR E
Sbjct: 73 PVLSDNYEGKKREKNLENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATE 132
Query: 70 KLAEYRPWYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVS 129
KL E++ + + R+ E +SLA+++++G +VP RA++IR E+ R+
Sbjct: 133 KLIEHKTYTQALPYFDRLDYVSMMCNEQAFSLAIEKLLGIDVPPRAKYIRILFGELTRIQ 192
Query: 130 AYLFWIMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKW 189
++ I + +G T W RE+L E ++GAR++ Y PGGV D+P
Sbjct: 193 NHIMGITTHALDVGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGVAWDLPVG-L 251
Query: 190 LRQLKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAY 249
+ + D +++ + ++++ EN I R IG++ AL G +G +R +G+
Sbjct: 252 MDDIYDWAVKFPARIDELEDMLTENRIWKARTVDIGLVSASDALNWGFSGVMVRGSGIKQ 311
Query: 250 DVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGP----PSGP 305
DVRK +PY Y +++F+VP +GD R L R E+ Q L I+ Q L P S
Sbjct: 312 DVRKTEPYDAYADMEFDVPIGTKGDCYDRYLCRVEEMRQSLNIVHQCLNKMPTGEIKSDD 371
Query: 306 YKVEDPRLKNLPR---------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPY 350
+KV P+ + F+VP G + +E+ KG+FG Y+V+DG+ KPY
Sbjct: 372 HKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVADGTGKPY 431
Query: 351 RVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
R +R P AH + + + + IAD+ ++ ++D ++DR
Sbjct: 432 RCFIRAPGFAH-LAAIHDVCYMSLIADIVAVIGTMDIVFGEVDR 474
>pir||S57332 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7 - wood tobacco
mitochondrion
Length = 394
Score = 196 bits (494), Expect = 3e-49
Identities = 124/387 (32%), Positives = 200/387 (51%), Gaps = 24/387 (6%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ L FGPQH A ++L+M+G V +A + G LHRG EKL EY+ + + R+
Sbjct: 11 FTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRL 70
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E YSLAV+ ++ EVP RAQ+IR E+ R+ +L + + +G T
Sbjct: 71 DYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTP 130
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDF 207
WA RE+L+ +E ++GAR++ + PGGV +D+P + + + S++ +
Sbjct: 131 FLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCI-DIDSFTQQFASRIDEL 189
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
+ ++ N I +R+ IG + + A G +G LR +GV +D+RK PY +Y +LDF++
Sbjct: 190 EEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRKAAPYDVYDQLDFDI 249
Query: 268 PTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR--------- 318
P GD R +R E+ Q + I+ Q L PSG K +D +L R
Sbjct: 250 PVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQ-MPSGMIKADDRKLCPPSRSRMKTSMES 308
Query: 319 -----------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLE 367
F VPA + VE+ KG+FG ++VS+GS++PYR +R P AH ++ L+
Sbjct: 309 LIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPCFAH-LQGLD 367
Query: 368 QLLVGARIADVPVILMSLDNCPPDIDR 394
+ +ADV + + D ++DR
Sbjct: 368 FMSKHHMLADVVTTIGTQDIVFGEVDR 394
>gi|11466853 NADH dehydrogenase 49kDa protein [Oryza sativa]
>gi|128835|sp|P12132|NUCC_ORYSA NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KD SUBUNIT, CHLOROPLAST (ORF 393)
>gi|66200|pir||DERZ49 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) 49K protein - rice chloroplast
>gi|12056|emb|CAA33911.1| (X15901) NADH dehydrogenase
49kDa protein [Oryza sativa] >gi|226677|prf||1603356DE
NADH dehydrogenase 49kD protein [Oryza sativa]
Length = 393
Score = 196 bits (493), Expect = 4e-49
Identities = 128/396 (32%), Positives = 209/396 (52%), Gaps = 23/396 (5%)
Query: 19 MELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPW 77
M L KD + GPQH + +I+ +DG V+ G+LHRG EK+AE R
Sbjct: 1 MSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI 60
Query: 78 YTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMG 137
+ + R + EAI A + + ++P+RA +IR +LE++R++++L W+
Sbjct: 61 IQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGP 120
Query: 138 LSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTV 197
LG T + RE + LFE TG R+ H Y GGV D+P W+ + D
Sbjct: 121 FMADLGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYG-WIDKCLDFC 179
Query: 198 EYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPY 257
+Y + ++ L+ +N I R+EG+G + + A+ G++GP LRA+G+ +D+RK D Y
Sbjct: 180 DYFLRGVIEYQQLITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLY 239
Query: 258 LLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYK-VEDPRLKNL 316
Y + D++V +EGD+LAR LVR E+ + + I++Q +E P GPY+ +E R K
Sbjct: 240 ESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEK-IPGGPYENLEVRRFKKA 298
Query: 317 ------------------PRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPS 358
P F++ + +A VE+ KG+ G Y+V D S P+R +R P
Sbjct: 299 KNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRWKIRPPG 358
Query: 359 IAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
+ +++L QL+ ++AD+ IL S+D ++DR
Sbjct: 359 FIN-LQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>gi|11497587 NADH dehydrogenase 49kD subunit [Spinacia oleracea]
>gi|7636168|emb|CAB88790.1| (AJ400848) NADH
dehydrogenase 49kD subunit [Spinacia oleracea]
Length = 393
Score = 195 bits (490), Expect = 9e-49
Identities = 123/389 (31%), Positives = 204/389 (51%), Gaps = 23/389 (5%)
Query: 26 KDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALL 84
KD + GP H + +I+ +DG V+ G+LHRG EK+AE R + +
Sbjct: 8 KDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPIVGYLHRGMEKIAENRTIIQYLPYV 67
Query: 85 LRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGV 144
R + EAI +++ +VP+RA +IR +LE++R++++L W+ +G
Sbjct: 68 TRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGA 127
Query: 145 YTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKL 204
T + RE + LFE TG R+ H Y GGV D+P W+ + D +Y L
Sbjct: 128 QTPFFYILRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYG-WIDKCLDFCDYFLIGL 186
Query: 205 PDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELD 264
++ L+ N I R+E +G++ + A+ G++GP LRA+G+ +D+RK D Y Y E D
Sbjct: 187 TEYQKLITRNPIFLERVENVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEFD 246
Query: 265 FEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPR------------ 312
+EV +EGD+LAR L+R E+ + + I++Q LE G P GPY+ + R
Sbjct: 247 WEVQWQKEGDSLARYLIRIGEMAESVKIIQQALE-GIPGGPYENLEIRRFNRIKYPEWND 305
Query: 313 -------LKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRV 365
K P F++ + + VE+ KG+ G +++ D S P+R +R P + +++
Sbjct: 306 FEYRFISKKPSPAFELSKQELYVRVEAPKGELGIFLIGDQSVFPWRWKIRPPGFIN-LQI 364
Query: 366 LEQLLVGARIADVPVILMSLDNCPPDIDR 394
L QL+ ++AD+ IL S+D ++DR
Sbjct: 365 LPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>pir||F70349 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoD1
[similarity] - Aquifex aeolicus
>gi|2983187|gb|AAC06787.1| (AE000695) NADH dehydrogenase
I chain D [Aquifex aeolicus]
Length = 593
Score = 193 bits (485), Expect = 3e-48
Identities = 123/375 (32%), Positives = 204/375 (53%), Gaps = 13/375 (3%)
Query: 31 LFFGPQHMATENFS-IILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
L +GP H T + ++G R+V+ G LHRG EKLAE+ + + R+
Sbjct: 221 LNWGPLHPGTHGTMWFLFDLEGERIVQTDVILGQLHRGVEKLAEHEMYNQFLVYTDRMDY 280
Query: 90 PESDVPEAIYSLAVDEIIGW--EVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
+ + +A++ ++G +VP +A++IRT + E+ R++++L W+ + LG T
Sbjct: 281 LSALCSNQAWVVAIERLMGIHDKVPPKAKYIRTMMSELQRINSHLLWLGTYALDLGALTI 340
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDF 207
+A RE++M + E +TGAR+ Y GGVR D+P + L +K ++ +L D+
Sbjct: 341 FLYAFKEREKIMDIIEGITGARLTISYPRIGGVRMDLP-EGALEVIKAFIKKFPEELKDW 399
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
+ ++ N I RR + +G++ K+ A GVTGP +R +G+ YD+RK +PY Y E++F++
Sbjct: 400 ETILTRNRIWLRRNKEVGIISKEDAYFHGVTGPVIRGSGIPYDIRKFEPYDAYDEVEFDI 459
Query: 268 PTLREGDALARALVRRYELEQDLYILEQL---LEMGPPSGP--YKVEDPRLK---NLPRF 319
P GD R LVR E++Q + I+EQ LE + P Y+ E +LK +
Sbjct: 460 PVGEIGDCYDRYLVRIEEMKQSIRIIEQCVAKLEKMSKNEPFFYEGEGKKLKLSLDGIGV 519
Query: 320 KVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVP 379
K P G+ ++ E+ +G+ G YVVS G PYRV +R PS + + + L+ +AD
Sbjct: 520 KAPVGEIYSSGENPRGELGFYVVSTGGTSPYRVKIRPPSY-YNLCIYPHLMKDRYVADAV 578
Query: 380 VILMSLDNCPPDIDR 394
IL S+D + DR
Sbjct: 579 TILASIDPVVGETDR 593
>gi|7525091 NADH dehydrogenase 49KDa protein [Arabidopsis thaliana]
>gi|6685679|sp|P56753|NUCC_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT, CHLOROPLAST
>gi|5881752|dbj|BAA84443.1| (AP000423) NADH
dehydrogenase 49KDa protein [Arabidopsis thaliana]
Length = 393
Score = 193 bits (485), Expect = 3e-48
Identities = 119/389 (30%), Positives = 207/389 (52%), Gaps = 23/389 (5%)
Query: 26 KDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALL 84
KD + GP H + +I+ +DG VV G+LHRG EK+AE R + +
Sbjct: 8 KDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYV 67
Query: 85 LRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGV 144
R + EAI +++ +VP+RA +IR +LE++R++++L W+ +G
Sbjct: 68 TRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGA 127
Query: 145 YTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKL 204
T + RE + LFE TG R+ H + GG+ D+P W+ + D +Y +++
Sbjct: 128 QTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYG-WIDKCLDFCDYFLTEV 186
Query: 205 PDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELD 264
++ L+ N I R+EG+G++ + A+ G++GP LRA+G+ +D+RK D Y Y E +
Sbjct: 187 VEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRYESYDEFE 246
Query: 265 FEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPR------------ 312
+E+ ++GD+LAR LVR E+ + + I++Q LE G P GPY+ + R
Sbjct: 247 WEIQWQKQGDSLARYLVRLSEMTESIKIIQQALE-GLPGGPYENLESRGFDRKRNPEWND 305
Query: 313 -------LKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRV 365
K P F++ + + VE+ KG+ G +++ D S P+R +R P + +++
Sbjct: 306 FEYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFIN-LQI 364
Query: 366 LEQLLVGARIADVPVILMSLDNCPPDIDR 394
L +L+ ++AD+ IL S+D ++DR
Sbjct: 365 LPELVKRMKLADIMTILGSIDIIMGEVDR 393
>sp|O07310|NUOD_RHOCA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|3282562|gb|AAC24988.1| (AF029365) NUOD
[Rhodobacter capsulatus]
Length = 413
Score = 192 bits (483), Expect = 6e-48
Identities = 128/393 (32%), Positives = 198/393 (49%), Gaps = 33/393 (8%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ + FGPQH A ++L++DG V +A + G LHRG EKL E R + N R+
Sbjct: 27 FNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNTPYFDRL 86
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E + LA++++ G VP RA IR E+ R+ +L + + +G T
Sbjct: 87 DYVAPMNQEHAWCLAIEKLTGTAVPRRASIIRVLFSEIGRILNHLLNVTTQAMDVGALTP 146
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLP-- 205
W RE+LM +E GAR++ Y PGGV +D+P D L D +E P
Sbjct: 147 PLWGFEEREKLMIFYERACGARLHANYFRPGGVHQDLPPD-----LIDDIEIWAKAFPQV 201
Query: 206 --DFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPEL 263
D + L+ EN I +R I ++ + G +G +R +G+A+D+R+ PY Y E
Sbjct: 202 LDDIEGLLTENRIFKQRNADICIITEAEIEKWGYSGVMVRGSGLAWDLRRAQPYECYDEF 261
Query: 264 DFEVPTLREGDALARALVRRYEL-EQDLYILEQLLEMGPPSGP------YKVEDPRLKNL 316
DF+V + GD R LVR E+ E IL+ ++ P G K+ P+ +
Sbjct: 262 DFKVAVGKNGDCYDRYLVRMAEMRESTKIILQACAKLRAPDGQGDILARGKLTPPKRAEM 321
Query: 317 PR---------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAH 361
FKVPAG+ +A VE+ KG+FG Y+V+DG++KPYR +R P AH
Sbjct: 322 KTSMEALIHHFKLYTEGFKVPAGEVYAAVEAPKGEFGVYLVADGTNKPYRAKIRAPGYAH 381
Query: 362 GIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
++ ++ + G ++ADV I+ ++D +IDR
Sbjct: 382 -LQSIDAVAKGHQLADVSAIIGTMDVVFGEIDR 413
>gi|9838441 NADH dehydrogenase subunit 7 [Beta vulgaris]
>gi|9087303|dbj|BAA99447.1| (AP000397) NADH
dehydrogenase subunit 7 [Beta vulgaris]
Length = 391
Score = 192 bits (482), Expect = 8e-48
Identities = 125/387 (32%), Positives = 197/387 (50%), Gaps = 24/387 (6%)
Query: 29 YELFFGPQHMATENFS-IILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ L FGPQH A S ++L+M+G V +A + G LHRG EKL EY+ + + R+
Sbjct: 8 FTLNFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRL 67
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E +S AV+ ++ EVP RAQ+IR E+ R+S + + + +G T
Sbjct: 68 DYVSMMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTP 127
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDF 207
WA RE+L+ +E + GAR++ + PGGV +D+P R + + + S++ +
Sbjct: 128 FLWAFEEREKLLEFYERVPGARMHASFIRPGGVAQDLPLG-LCRDIDSSTQQFASRIDEL 186
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
+ + N I +R+ IG + + A G +G LR GV +D+R+ PY +Y +LDF+V
Sbjct: 187 EEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDLRRAAPYDVYDQLDFDV 246
Query: 268 PTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR--------- 318
P GD R +R E+ Q + I+ Q L PSG K +D +L R
Sbjct: 247 PVGTRGDRYDRYCIRIEEMRQSVRIIVQCLNQ-MPSGMIKADDRKLCPPSRYRMKLSMES 305
Query: 319 -----------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLE 367
F VPA + VE+ KG+FG ++VS+GS++PYR +R P AH + L+
Sbjct: 306 SIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHS-QGLD 364
Query: 368 QLLVGARIADVPVILMSLDNCPPDIDR 394
+ ADV I+ + D ++DR
Sbjct: 365 SMSKHHMPADVVTIIGTQDIVSGEVDR 391
>gi|11467869 49 kDa subunit of NADH-plastoquinone oxidoreductase [Nephroselmis
olivacea] >gi|5880798|gb|AAD54891.1|AF137379_114
(AF137379) 49 kDa subunit of NADH-plastoquinone
oxidoreductase [Nephroselmis olivacea]
Length = 391
Score = 191 bits (481), Expect = 1e-47
Identities = 119/380 (31%), Positives = 195/380 (51%), Gaps = 21/380 (5%)
Query: 34 GPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPES 92
GP H + +I+ +DG V+ G+LHRG EK+AE R + + R +
Sbjct: 14 GPHHPSMHGVLRLIVTLDGENVLDCEPVVGYLHRGMEKIAENRTIVQYLPYVTRWDYLAT 73
Query: 93 DVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWAA 152
EAI A + + EVP RA ++R +LE++R++++L W+ LG T +
Sbjct: 74 MFTEAITVNAPERLANIEVPRRASYLRVIMLELSRIASHLLWLGPFMADLGAQTPFFYIL 133
Query: 153 AYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVF 212
RE + LFE TG R+ H Y GGV D+P W+ + D EY K+ +++ L+
Sbjct: 134 REREMIYDLFEAATGMRMMHNYFRVGGVAADVPYG-WIDKCLDFCEYFLPKVDEYEALIT 192
Query: 213 ENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLRE 272
N I +R++G+G + + A+ G++GP LRA+GV++D+RK D Y Y + + V +
Sbjct: 193 RNPIFLKRVKGVGTISPQQAINWGLSGPMLRASGVSWDLRKVDRYECYEDFHWSVESEET 252
Query: 273 GDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRL------------------K 314
GD LAR LVR E+ I++Q L+ P +E +L K
Sbjct: 253 GDCLARYLVRIREMRTSTKIVQQALKSIPGGPTENLEARQLSQGRTSPWNEFDYQFLGKK 312
Query: 315 NLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGAR 374
P FK+P + + VE+ KG+ G +++ D P+R +R P + +++L L+ G +
Sbjct: 313 ASPTFKMPRQEHYVRVEAPKGELGVFLIGDDHVFPWRWKIRPPGFIN-VQILPNLVQGMK 371
Query: 375 IADVPVILMSLDNCPPDIDR 394
+AD+ IL S+D ++DR
Sbjct: 372 LADIMTILGSIDIIMGEVDR 391
>pir||T36080 probable NADH dehydrogenase - Streptomyces coelicolor
>gi|4585838|emb|CAB40932.1| (AL049630) putative NADH
dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 383
Score = 191 bits (480), Expect = 1e-47
Identities = 132/371 (35%), Positives = 197/371 (52%), Gaps = 16/371 (4%)
Query: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
L GPQH +T + L +DG R+ A G++HRG EKL E R + I L R
Sbjct: 22 LNIGPQHPSTHGVLRLKLVLDGERITSAEPVIGYMHRGAEKLFEARDYRQIIMLANRHDW 81
Query: 90 PESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQ 149
+ E LAV+ ++G EVP RA W RT + E+ RV +L ++ +LG T
Sbjct: 82 LSAFSNELGVVLAVERMLGMEVPTRAVWTRTLLAELNRVLNHLMFLGSYPLELGGITPVF 141
Query: 150 WAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDN 209
+A RE L + EE++G R+++++ GG++ D+P W + + V ++S++ FD+
Sbjct: 142 YAFREREVLQNVMEEVSGGRMHYMFNRVGGLKEDLPAG-WTTRARGAVAAVRSRMDVFDD 200
Query: 210 LVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELD--FEV 267
LV N I R G+G + + A GV+GP RA+GV +D+R+D+PYL Y EL +V
Sbjct: 201 LVLGNEIFRGRTRGVGALSAEAVHAYGVSGPVARASGVDFDLRRDEPYLAYGELQDTLKV 260
Query: 268 PTLREGDALAR--ALVRRYELEQDL--YILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPA 323
T +GD LAR L+ + DL L++L E+ P GP P++ K P
Sbjct: 261 VTRTDGDCLARFECLLAQTHNALDLADACLDRLAELAP--GPVNQRLPKV-----LKAPE 313
Query: 324 GDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILM 383
G +A E+ G G Y+VS G PYR+ +R S + I+ L +LL G +AD+ IL
Sbjct: 314 GHTYAWTENPLGINGYYLVSKGEKTPYRLKLRSASY-NNIQALAELLPGTLVADMVAILG 372
Query: 384 SLDNCPPDIDR 394
SL DID+
Sbjct: 373 SLFFVVGDIDK 383
>gi|11497462 NADH dehydrogenase (ubiquinone), subunit 7 [Prototheca wickerhamii]
>gi|6647672|sp|Q37619|NUCM_PROWI NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|7432635|pir||T11921 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - Prototheca
wickerhamii mitochondrion >gi|467853|gb|AAD12640.1|
(U02970) NADH dehydrogenase (ubiquinone), subunit 7
[Prototheca wickerhamii]
Length = 400
Score = 190 bits (477), Expect = 3e-47
Identities = 124/393 (31%), Positives = 205/393 (51%), Gaps = 34/393 (8%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ + FGPQH A ++L+M+G V ++ + G LHRG EKL EY+ + + R+
Sbjct: 15 FTINFGPQHPAAHGVLRLVLEMNGEVVQRSDPHIGLLHRGTEKLIEYKNYLQALPYFDRL 74
Query: 88 CVPESDVPEAIYSLAVDEI--IGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVY 145
E YSLAV+++ I ++P RAQ+IR E+ R+ +L + + +G
Sbjct: 75 DYVSMMCQEHAYSLAVEKLLNISKDIPLRAQYIRVLFSEITRILNHLLAVTCHAMDVGAL 134
Query: 146 TAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIK---S 202
T W RE+LM +E ++GAR++ Y PGGV D+P L +D ++ K S
Sbjct: 135 TPFLWGFEEREKLMEFYERVSGARMHAAYIRPGGVALDLP----LGLCEDIYKFSKQFAS 190
Query: 203 KLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPE 262
++ + + ++ N I +R+ +GV+ + AL +G LR +G+A+D+RK PY +Y
Sbjct: 191 RIDEIEEMLTSNRIWKQRLVDVGVVSAEQALDWSFSGVLLRGSGIAWDLRKTQPYEVYDR 250
Query: 263 LDFEVPTLREGDALARALVRRYELEQDLYILEQLL-EMGPPSGPYKVEDPRLKNLPR--- 318
+ F +P GD R L+R E+ + L I+ Q + EM G +++D ++ R
Sbjct: 251 MKFNIPVGTRGDCYDRYLIRVQEMRESLRIVMQTINEMS--KGIIRLDDRKITPPTRDQM 308
Query: 319 -----------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAH 361
F VPAG+ + VE+ KG+FG Y+VS+G+ KPYR +R P AH
Sbjct: 309 KQSMESLIHHFKFYTGGFVVPAGETYTAVEAPKGEFGVYLVSNGTSKPYRCKIRAPGFAH 368
Query: 362 GIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
++ L+ + +ADV I+ + D ++DR
Sbjct: 369 -LQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 400
>sp|P27724|NUCC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KD SUBUNIT
>gi|66201|pir||QXYBNH NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain ndhH - Synechocystis sp. (strain PCC
6803) >gi|48042|emb|CAA43057.1| (X60650) NDH-H
[Synechocystis PCC6803] >gi|1653022|dbj|BAA17939.1|
(D90910) NADH dehydrogenase subunit 7 [Synechocystis
sp.]
Length = 394
Score = 189 bits (476), Expect = 4e-47
Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 24/385 (6%)
Query: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
L GP H + +I+ +DG VV G+LHRG EK+AE R + + R
Sbjct: 13 LNMGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAESRTNIMYVPYVSRWDY 72
Query: 90 PESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQ 149
EAI A +++ EVP+RAQ+IR +LE+ R++ +L W+ +G T
Sbjct: 73 AAGMFNEAITVNAPEKLADIEVPKRAQYIRVIMLELNRIANHLLWLGPFMADVGAQTPFF 132
Query: 150 WAAAYRERLMRLFEELTGAR-VYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFD 208
+ RE + L+E +G R + + Y GGV D+P W + +D +Y K+ +++
Sbjct: 133 YIFREREMIYDLWEAASGMRLINNNYFRVGGVAVDLPYG-WNDKCEDFCDYFLPKVDEYE 191
Query: 209 NLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVP 268
L+ N I RR+EG+G + ++ A+ G++GP LR +GV +D+RK D Y Y ELD+EV
Sbjct: 192 KLITNNPIFRRRVEGVGTVTREEAINWGLSGPMLRGSGVKWDLRKVDHYECYDELDWEVQ 251
Query: 269 TLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYK-VEDPRL-------------- 313
GD AR LVR E+ + + I+ Q L+ P GPY+ +E RL
Sbjct: 252 YETAGDCFARYLVRIREMRESVKIIRQALK-AMPGGPYENLEAKRLQEGKKSEWNDFQYQ 310
Query: 314 ----KNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQL 369
K P FK+PAG+ + +ES KG+ G ++ + P+R +R + +++L +
Sbjct: 311 YIAKKVAPTFKIPAGEHYVRLESGKGELGIFIQGNDDVFPWRWKIRSADF-NNLQILPHI 369
Query: 370 LVGARIADVPVILMSLDNCPPDIDR 394
L G ++AD+ IL S+D +DR
Sbjct: 370 LKGVKVADIMAILGSIDIIMGSVDR 394
>pir||S38313 NADH dehydrogenase I chain nuoD - Escherichia coli
Length = 406
Score = 189 bits (475), Expect = 5e-47
Identities = 127/399 (31%), Positives = 200/399 (49%), Gaps = 26/399 (6%)
Query: 18 GMELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRP 76
GM+ +D L GP H + F +L++DG +V + + G+ HRG EK+ E +
Sbjct: 12 GMKRGTENEDFMFLNLGPNHRRADGAFRTVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 71
Query: 77 WYTNIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIM 136
W++ I RI V E Y LAV+++ G VP+R IR + E+ R++++L +I
Sbjct: 72 WHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIS 131
Query: 137 GLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDT 196
+G T +A R+++ L E +TG R++ + GGVRR P + +
Sbjct: 132 TFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVRR--PAARLGSPAAEF 189
Query: 197 VEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDP 256
++++ +L ++ +N I R +G+ M +K AL G TG LRATG+ +DVRK P
Sbjct: 190 LDWMPKRLASYEKAALQNTILKGRSQGVAPMARKEALEWGTTGAGLRATGIDFDVRKARP 249
Query: 257 YLLYPELDFEVPT-LREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKN 315
Y Y DFE+P D R +++ EL Q L ILEQ L P GP+ + P
Sbjct: 250 YSGYENFDFEIPVGGGVSDCYTRVMLKVEELGQSLRILEQCLN-NMPEGPFNRDHPLTTP 308
Query: 316 LPRFK--------------------VPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVR 355
P+ + +PA ++F +E+TKG Y+ SDGS YR VR
Sbjct: 309 PPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVR 368
Query: 356 GPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
PS AH ++ + + G+ ++D+ V L S+D D+DR
Sbjct: 369 TPSFAH-LQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 406
>gi|11466472 NADH dehydrogenase subunit 7 [Chrysodidymus synuroideus]
>gi|7110469|gb|AAF36941.1|AF222718_15 (AF222718) NADH
dehydrogenase subunit 7 [Chrysodidymus synuroideus]
Length = 398
Score = 189 bits (475), Expect = 5e-47
Identities = 120/390 (30%), Positives = 198/390 (50%), Gaps = 30/390 (7%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ + FGPQH A +IL++DG +V + + G LHRG EKL EY+ + + R+
Sbjct: 15 FTINFGPQHPAAHGVLRLILELDGEIIVNSDPHIGLLHRGTEKLIEYKTYLQALPYFDRL 74
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E YSLA+++++ ++P RAQ IR E+ R+ +L + + +G +
Sbjct: 75 DYVSMMAQEHTYSLAIEKLMNIKIPRRAQIIRVLFCEITRLLNHLVAVGCHALDVGAMSP 134
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKS---KL 204
W RE+LM +E ++GAR++ Y PGGV D+P + L D +IK +L
Sbjct: 135 FMWGFEEREKLMEFYERVSGARMHAAYFRPGGVASDLP----IGLLDDIFIFIKQFKIRL 190
Query: 205 PDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELD 264
+ + ++ N I R+ IG++ A+ G +G LR +GV +D+RK +PY +Y EL+
Sbjct: 191 DEMEEMLTSNRIWKERLVDIGIVSAFDAINWGFSGVLLRGSGVPWDLRKSNPYEIYNELN 250
Query: 265 FEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFK---- 320
F P GD R L+R E+ Q L ++ Q L + GP K + +L + F+
Sbjct: 251 FSYPVGTNGDCYDRYLIRIEEMRQSLSLISQCLNI-INDGPIKTTNSKLTSPSLFELKNS 309
Query: 321 ---------------VPA-GDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIR 364
+P G+ + E+ KG+FG Y++S+ + KPYR ++ P H ++
Sbjct: 310 MESLIHHFKYYTEGLIPGFGETYTATEAPKGEFGVYLISNNTEKPYRCKIKAPGFGH-LQ 368
Query: 365 VLEQLLVGARIADVPVILMSLDNCPPDIDR 394
L + G IADV I+ + D ++DR
Sbjct: 369 ALNFMASGHMIADVVTIIGTQDIVFGEVDR 398
>sp|Q37720|NUCM_PYLLI NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|1076191|pir||S53054 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - brown alga
(Pylaiella littoralis) >gi|728615|emb|CAA88557.1|
(Z48623) NADH dehydrogenase (ubiquinone), subunit 7
[Pilayella littoralis]
Length = 398
Score = 187 bits (470), Expect = 2e-46
Identities = 120/387 (31%), Positives = 200/387 (51%), Gaps = 24/387 (6%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ + FGPQH A +IL+++G V +A + G LHRG EKL E + ++ + R+
Sbjct: 15 FTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRL 74
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E Y+L+V+ ++ +P RAQ+IR E+ R+ +L + + +G T
Sbjct: 75 DYVSMMCQEHTYALSVENLLQVSIPRRAQFIRVLFAEITRILNHLLAVGCHAMDVGAMTP 134
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDF 207
WA RE+LM +E ++GAR++ Y PGGV +DI + + V +L +
Sbjct: 135 FLWAFEEREKLMEFYERVSGARMHASYFRPGGVSQDI-SVGLVDDIFAFVAQFGQRLDEI 193
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
+ ++ +N I R+ IGV+ + A+ G +G LR +G+ +D+RK++PY +Y +L+F+
Sbjct: 194 EEMLTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGIRWDLRKNEPYEIYSDLNFQG 253
Query: 268 PTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR--------- 318
+ GD R L R E+ Q L I+ Q L P G K++D ++ R
Sbjct: 254 VVGKTGDCYDRYLARVEEMRQSLSIIYQCLNK-MPRGSVKIDDAKISPPSRSEVKQSMES 312
Query: 319 ----FK-------VPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLE 367
FK VPAG+ + E+ KG+FG Y+VS GS +PYR ++ P +H ++ L
Sbjct: 313 LIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLVSKGSSRPYRCKIKAPGFSH-LQGLN 371
Query: 368 QLLVGARIADVPVILMSLDNCPPDIDR 394
+ +ADV I+ + D ++DR
Sbjct: 372 FMACSHMLADVVTIIGTQDIVFGEVDR 398
>sp|P93306|NUCM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|6851019|emb|CAA69735.3| (Y08501) NADH
dehydrogenase subunit 7 [Arabidopsis thaliana]
Length = 394
Score = 180 bits (453), Expect = 2e-44
Identities = 122/383 (31%), Positives = 192/383 (49%), Gaps = 24/383 (6%)
Query: 33 FGPQHMATENFS-IILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPE 91
FGPQH A S ++L+M+G V +A + G LHRG EKL EY+ + + R
Sbjct: 15 FGPQHPAAHGVSRLVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVS 74
Query: 92 SDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWA 151
E +S AV++++ EVP RAQ+IR E+ R+S + + + +G T WA
Sbjct: 75 MMAQEHAHSSAVEKLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWA 134
Query: 152 AAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLV 211
RE+L+ +E ++GAR++ + PGGV +D+P R + + S++ + + +
Sbjct: 135 FEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLG-LCRDIDSFTQQFASRIDELEEMS 193
Query: 212 FENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLR 271
N I +R+ IG + + A G +G LR GV +D R+ PY ++ + D +VP
Sbjct: 194 TGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGT 253
Query: 272 EGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR------------- 318
GD R +R E+ Q L I+ Q L PSG K +D +L R
Sbjct: 254 RGDRYDRYCIRIEEMRQSLRIIVQCLNQ-MPSGMIKADDRKLCPPSRCRMKLSMESSIHH 312
Query: 319 -------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLV 371
F VPA + VE+ KG+FG ++VS+GS++PYR +R P AH + L+ +
Sbjct: 313 FELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHS-QGLDSMSK 371
Query: 372 GARIADVPVILMSLDNCPPDIDR 394
ADV I+ + D ++DR
Sbjct: 372 HHMPADVVTIIGTQDIVFGEVDR 394
>gi|7524987 NADH dehydrogenase subunit 7 [Dictyostelium discoideum]
>gi|6647670|sp|Q23883|NUCM_DICDI NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|11254566|pir||T43763 NADH dehydrogenase
chain 7 [imported] - slime mold (Dictyostelium
discoideum) mitochondrion >gi|1088421|dbj|BAA04731.1|
(D21196) 49kd subunit of iron-sulphur subcomplex of
NADH-ubiquinone reductase [Dictyostelium discoideum]
>gi|4958890|dbj|BAA78067.1| (AB000109) NADH
dehydrogenase subunit 7 [Dictyostelium discoideum]
Length = 406
Score = 180 bits (451), Expect = 3e-44
Identities = 121/393 (30%), Positives = 199/393 (49%), Gaps = 30/393 (7%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
+ L FGPQH A +I++++ VV+ + G LHRG EKL E + + + R+
Sbjct: 17 FTLNFGPQHPAAHGVLRLIVELESENVVRVEPHIGLLHRGTEKLIEGKTYTQALPYFDRL 76
Query: 88 CVPESDVPEAIYSLAVDEI------IGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFK 141
+V E YSLAV+ + I E+P+RA+ IR E+ RV ++ +
Sbjct: 77 DYVSMNVQEHAYSLAVERLYLDSLDIELEIPQRAKVIRVLFSEITRVLNHIMATTTHAMD 136
Query: 142 LGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIK 201
+G T WA RE+LM +E ++GAR++ Y PGGV D+P + K ++Y K
Sbjct: 137 VGALTPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVAFDLPMNISEDIYKFVIQYRK 196
Query: 202 SKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYP 261
+L + ++++ N I +R+ IG++ + AL G TGP LR G+ YD+RK+ PY Y
Sbjct: 197 -RLEEIEDMLINNRIWKQRLVDIGIVSAEEALNYGFTGPLLRGAGIVYDIRKNYPYDDYD 255
Query: 262 ELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR--- 318
+ DF++ E ++ R ++R E+ Q L I+EQ L P G K+E + R
Sbjct: 256 KYDFKIIIGEENNSYTRFIIRMKEMYQSLSIIEQALNNLRP-GLIKLEGVNITAPDRAFV 314
Query: 319 -----------------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAH 361
F +PA + + VE+ KG+FG Y+ ++ + KPYR ++ P H
Sbjct: 315 KKDMESCINHFKFFSEGFIIPANENYTIVEAPKGEFGIYLNANDTAKPYRCRIKAPGFLH 374
Query: 362 GIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
++ L + +ADV ++ + D ++DR
Sbjct: 375 -LQGLNMMSKDHLLADVVTLIGTQDIVFGEVDR 406
>sp|Q36450|NUCM_NICSY NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|805002|emb|CAA60392.1| (X86706)
NADH:ubiquinone oxydoreductase subunit 7 [Nicotiana
sylvestris]
Length = 394
Score = 177 bits (444), Expect = 2e-43
Identities = 120/383 (31%), Positives = 192/383 (49%), Gaps = 24/383 (6%)
Query: 33 FGPQHMATENFS-IILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPE 91
FGPQH A S +L+M+G V +A + G L RG EKL EY+ + + R
Sbjct: 15 FGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQRGTEKLIEYKTYLQALPYSDRSEYVS 74
Query: 92 SDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWA 151
E +S AV+ ++ EVP RAQ+IR E+ R+S + + + +G T WA
Sbjct: 75 MMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWA 134
Query: 152 AAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLV 211
RE+L+ +E ++GAR++ + PGGV +D+P + + + S++ + + +
Sbjct: 135 FEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCI-DIDSFTQQFASRIDELEEMS 193
Query: 212 FENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLR 271
N I +R+ IG + + A G +G LR +GV +D+RK PY ++ +LD ++P
Sbjct: 194 TGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRKAAPYDVHDQLDPDIPVGT 253
Query: 272 EGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR------------- 318
GD R +R E+ Q + I+ Q L PSG K +D +L R
Sbjct: 254 RGDRYDRYCIRIEEMRQSVRIIVQCLNQ-MPSGMIKADDRKLCPPSRSRMKLSMESSIHH 312
Query: 319 -------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLV 371
F VPA + VE+ KG+FG ++VS+GS++PYR +R P AH + L+ +
Sbjct: 313 FEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPCFAHS-QGLDSMSK 371
Query: 372 GARIADVPVILMSLDNCPPDIDR 394
ADV I+ + D ++DR
Sbjct: 372 HHMPADVVTIIGTQDIVSGEVDR 394
>emb|CAA52952.1| (X75036) NADH dehydrogenase [Triticum aestivum]
Length = 394
Score = 175 bits (439), Expect = 8e-43
Identities = 119/382 (31%), Positives = 189/382 (49%), Gaps = 24/382 (6%)
Query: 34 GPQHMATENFS-IILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPES 92
GPQH A S +L+M+G V +A + G LHRG EKL EY+ + + R+ +
Sbjct: 16 GPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYFDRLDYVST 75
Query: 93 DVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWAA 152
E +S AV+ ++ EVP RAQ+IR E+ R+S + + +G T WA
Sbjct: 76 MAQEHAHSSAVERLLNCEVPLRAQYIRVLFCEITRISNHSLASTTHAMDVGASTPFLWAF 135
Query: 153 AYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVF 212
RE+L+ +E + GAR++ + PGGV +D+P R + + + S++ + + +
Sbjct: 136 EEREKLLEFYERVPGARMHASFIRPGGVAQDLPLG-LCRDIDSSTQQFASRIDELEEMST 194
Query: 213 ENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLRE 272
N I +R+ IG + + A G +G LR GV +D R+ PY ++ + D +VP
Sbjct: 195 GNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGTR 254
Query: 273 GDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPR-------------- 318
GD R +R E+ Q + I+ Q PSG K +D +L R
Sbjct: 255 GDRYDRYCIRIEEMRQSVRIIVQCPNQ-MPSGMIKADDRKLCPPSRSRMKLSMESSIHHF 313
Query: 319 ------FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVG 372
F VPA + VE+ KG+FG ++VS+GS++PYR +R P AH + L+ +
Sbjct: 314 ELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHS-QGLDSMSKH 372
Query: 373 ARIADVPVILMSLDNCPPDIDR 394
ADV I+ + D ++DR
Sbjct: 373 HMPADVVTIIGTQDIVFGEVDR 394
>pir||D70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoD2
[similarity] - Aquifex aeolicus
>gi|2983737|gb|AAC07298.1| (AE000734) NADH dehydrogenase
I chain D [Aquifex aeolicus]
Length = 586
Score = 175 bits (439), Expect = 8e-43
Identities = 119/388 (30%), Positives = 195/388 (49%), Gaps = 26/388 (6%)
Query: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
L +GP H T + ++G +VV++ G LHRG EKLAE ++ I R+
Sbjct: 201 LNWGPLHPGTHGTIWFLFDLEGEKVVQSDVILGQLHRGMEKLAENLHYFQFIPYTDRMDY 260
Query: 90 PESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQ 149
+ E Y V+ ++G EVPE+A++IRT E+ R++++L W+ + LG T
Sbjct: 261 ISAICNELAYVETVERLLGVEVPEKARYIRTMFAELQRINSHLLWLGTGALDLGALTVFL 320
Query: 150 WAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDN 209
+A RE++M + E G R+ + GGV D+ + L +K ++ ++L ++
Sbjct: 321 YAFREREKIMDIIEGNAGYRLTSCFLRIGGVHYDL-AEGTLDVVKHFIKDFPNRLKEYHT 379
Query: 210 LVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPT 269
L+ N I RR + +GV+ ++ G++GP R +GV YD+RK PY Y E++F++P
Sbjct: 380 LLTRNRIWLRRTKDVGVITREDVHNYGLSGPVARGSGVPYDLRKLQPYAAYDEVEFDIPV 439
Query: 270 LREGDALARALVRRYELEQDLYILEQL---LEMGPPSGPY-KVEDPRL------------ 313
GD R LVR E+ Q + I+EQ LE P PY E P +
Sbjct: 440 GEVGDVYDRYLVRMEEMAQSVRIIEQCVQKLEKLPKDAPYLNKEHPAVIPPKEDVFHDLE 499
Query: 314 KNLPRFKV-------PAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVL 366
+ F+V P G+ + E+ +G+ G ++ S G KPYR +R ++ + + +
Sbjct: 500 SMVKSFRVVVHGEDAPPGEVYFAGENPRGELGFFIYSKGGGKPYRTRIRSGAL-YNLSIF 558
Query: 367 EQLLVGARIADVPVILMSLDNCPPDIDR 394
+L+ G IAD +L SLD + DR
Sbjct: 559 PKLIQGRTIADAIALLGSLDPVVGETDR 586
>pir||E75060 hydrogenase-4 component g (EC 1.-.-.-) PAB1394 - Pyrococcus abyssi
(strain Orsay) >gi|5458891|emb|CAB50378.1| (AJ248287)
HYDROGENASE-4 COMPONENT G (EC 1.-.-.-) [Pyrococcus
abyssi]
Length = 588
Score = 175 bits (438), Expect = 1e-42
Identities = 124/377 (32%), Positives = 192/377 (50%), Gaps = 19/377 (5%)
Query: 19 MELYPIEKDTYELFFGPQHMATE---NFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYR 75
+EL + T + GP HM E +F + +K G +V + HRG EK+ E R
Sbjct: 187 IELKKPPEGTSTVPMGPLHMGIEEPAHFKLFVK--GEEIVDVDYRGFYSHRGIEKIGEGR 244
Query: 76 PWYTNIALLL-RICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFW 134
Y + L RIC Y++A++ + E+P+RA++IRT +LE+ R+ +L W
Sbjct: 245 LTYNQVLFLAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLW 304
Query: 135 IMGLSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLK 194
+ + +G T A RE +M L E LTG R + I GGVRRDI D ++
Sbjct: 305 VGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDIL-DYRKEEIL 363
Query: 195 DTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKD 254
V I+ ++ F +V +R EG+G++ K A V GP RA+G D R D
Sbjct: 364 RVVREIREEVKRFLEVVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLD 423
Query: 255 D---PYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDP 311
Y ELD++VP +EGD LAR LVR EL + ++I+EQ+++ P G V
Sbjct: 424 QATKTATAYNELDWKVPVYKEGDVLARVLVRMDELFESIWIVEQVIDQ-MPGGDVMVPVG 482
Query: 312 RLKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLV 371
R LP ++ +A E+ +G+ YV++ +K YR VR P+ + + + ++L
Sbjct: 483 R---LPEYE----EALGFTEAHRGEVVHYVMTGEKNKVYRWKVRAPTY-NNLPAVPEMLK 534
Query: 372 GARIADVPVILMSLDNC 388
G +AD P+I+ S+D C
Sbjct: 535 GYHVADAPLIIASIDPC 551
>gb|AAG19139.1| (AE005011) NADH dehydrogenase/oxidoreductase; NdhG5 [Halobacterium
sp. NRC-1]
Length = 562
Score = 171 bits (428), Expect = 2e-41
Identities = 127/395 (32%), Positives = 201/395 (50%), Gaps = 30/395 (7%)
Query: 18 GMELYPIEKDTYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRP 76
G E + DT L GP H AT + +DG +V + G+LHR E++A+
Sbjct: 180 GHEQAADDSDTMFLNIGPHHPATHGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGT 239
Query: 77 WYTNIALLLRICVPESD---------VPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMAR 127
+ I +P D + E Y+ +++ +VPE AQ +RT E+ R
Sbjct: 240 YRHQI-------MPYPDRWDYGPGGILNEWAYARTAEDLADIDVPEYAQILRTMGGELCR 292
Query: 128 VSAYLFWIMGLSFKL-GVYTA-GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIP 185
++ ++ + + G +TA +A RE + + E+LTG R+ Y GGV DIP
Sbjct: 293 IACHMLALGTFCLDIYGDFTAIFMYAMRDREVVQNILEDLTGQRMMLNYLRLGGVVWDIP 352
Query: 186 GDK--WLRQLKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLR 243
+ + ++D ++ + +L ++ +L+ N I R GV+D + A GVTGP R
Sbjct: 353 EPRAEFFESVRDFLDELPERLDEYSDLITSNEIFQARTVNTGVLDYETAKDYGVTGPVAR 412
Query: 244 ATGVAYDVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEM--GP 301
+GV YDVR+DDPY YPELD++V T GD +R LVR E+EQ I+EQ +++ G
Sbjct: 413 GSGVDYDVRRDDPYGYYPELDWDVVTEDGGDNYSRLLVRMEEVEQSARIIEQCVDLLEGW 472
Query: 302 PSGPYKVEDPRLKNLPR-FKVPAG-DAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSI 359
P ++ N+PR K AG + + VE KG+ G Y+ +DG+ KP R +R P
Sbjct: 473 PEDERDIQ----ANVPRTLKPEAGTETYRTVEGAKGELGVYIRADGTEKPGRFKIRSPCF 528
Query: 360 AHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
++ + L+++ G I D+ L SLD ++DR
Sbjct: 529 SN-LSALKEMSTGEYIPDLVATLGSLDVILGEVDR 562
>emb|CAA76121.1| (Y16191) echE [Methanosarcina barkeri]
Length = 358
Score = 169 bits (424), Expect = 5e-41
Identities = 109/357 (30%), Positives = 185/357 (51%), Gaps = 12/357 (3%)
Query: 33 FGPQH-MATENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPE 91
FGPQH + E S+ L++D N VV + + G++HRG E + + + RIC
Sbjct: 7 FGPQHPVLPEPVSLKLEIDDNVVVGVLPSLGYVHRGLETFINTKDFNQTTYVCERICGIC 66
Query: 92 SDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWA 151
S + Y+ V+++ E+PERAQ+IR V E+ R+ ++L W+ + G +
Sbjct: 67 SALHGITYTRTVEKLFDTEIPERAQYIRVIVGELNRLHSHLLWLGLFADGFGFESLFYEC 126
Query: 152 AAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLV 211
YRE ++ + E + G RV H + GGV RD+ + + L + +++++ + + +
Sbjct: 127 WKYREEVLDVAERICGNRVIHSISKVGGVTRDLTKEH-IDMLLKMCDSLETEIKNIEKVF 185
Query: 212 FENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLR 271
NY +R+ G+ + K+ A G GP LR +G A DVR+ + +Y +L F+ +
Sbjct: 186 VNNYTVKQRLVGLATLSKQVAYEVGTAGPTLRGSGNAIDVRETPDWDIYKDLGFKTAVEK 245
Query: 272 EGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGDAFAHVE 331
+GD AR VR EL L I+ + P G +V R+K P G+A E
Sbjct: 246 DGDCYARTKVRITELLNSLTIIRNAISK-MPEGEIEV---RVKGF-----PTGEAIMRTE 296
Query: 332 STKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNC 388
+G+ YV +G+ K R+ VR P+ A+ I L +L G ++ADVP++++++D C
Sbjct: 297 QPRGEVIYYVKGNGTKKLERLKVRTPTFAN-IPSLLLMLPGVKLADVPIVVLTIDPC 352
>sp|P31895|COOH_RHORU CARBON MONOXIDE-INDUCED HYDROGENASE >gi|11254539|pir||T51319
carbon-monoxide dehydrogenase (EC 1.2.99.2) cooH chain
[similarity] - Rhodospirillum rubrum
>gi|1498746|gb|AAC45121.1| (U65510) CooH [Rhodospirillum
rubrum]
Length = 361
Score = 162 bits (407), Expect = 5e-39
Identities = 117/365 (32%), Positives = 181/365 (49%), Gaps = 16/365 (4%)
Query: 28 TYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLR 86
TY + GP H+A E +++DG +VV G +HRG E LA R Y NI L R
Sbjct: 3 TYTIPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTER 62
Query: 87 ICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYT 146
+C S+ Y +A++ I G VP RAQ++R E RV++++F + L+ +G +
Sbjct: 63 VCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDS 122
Query: 147 AGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIP---GDKWLRQLKDTVEYIKSK 203
RE + E + G R+ GGV+ D+ D ++ QL ++ +
Sbjct: 123 LFMHVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRDE 182
Query: 204 LPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPEL 263
+ L N R GIGV+ + G+ GP R +G AYDVRK PY +Y L
Sbjct: 183 IIP---LYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRL 239
Query: 264 DFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPA 323
DFE+ GD +RA+VR E + ++ Q L P GP K P +PA
Sbjct: 240 DFEMALGEHGDVWSRAMVRWQEALTSIGLIRQCLR-DMPDGPTKAG-------PVPPIPA 291
Query: 324 GDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILM 383
G+A A E+ +G+ Y+ ++G+ +P R+ R P+ + L ++ GARI+D+P+I+
Sbjct: 292 GEAVAKTEAPRGELIYYLKTNGTDRPERLKWRVPTYMNW-DALNVMMAGARISDIPLIVN 350
Query: 384 SLDNC 388
S+D C
Sbjct: 351 SIDPC 355
>dbj|BAB08104.1| (AB039844) NADH dehydrogenase subunit 7 [Physarum polycephalum]
Length = 401
Score = 160 bits (401), Expect = 2e-38
Identities = 116/400 (29%), Positives = 193/400 (48%), Gaps = 39/400 (9%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
Y + FGPQH A ++++++G + + G LHRG EKL E++ + ++ R+
Sbjct: 7 YLINFGPQHPAAHGVLRMVVELNGEVIQNCDPHIGLLHRGTEKLIEHKNFLQSLPYFDRL 66
Query: 88 CVPESDVPEAIYSLAVDEIIG----------WEVPERAQWIRTTVLEMARVSAYLFWIMG 137
E YSLAV+ + ++PERA++IR LE+ R+ +L +
Sbjct: 67 DYVSMMAQEHAYSLAVENLFNDLCAKALLPYIDIPERARYIRVLFLEITRILNHLLAVTT 126
Query: 138 LSFKLGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTV 197
+ +G T WA RE+L+ +E ++GAR++ Y PGGV D+P + L D
Sbjct: 127 HAMDVGALTPFLWAFEEREKLIEFYERVSGARMHTAYIRPGGVAYDLP----IGLLNDIY 182
Query: 198 EYI---KSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKD 254
E++ KL D + L+ +N I R+ IG + A +G +R +G+ YD+RK
Sbjct: 183 EFLTPFSKKLNDMEELLTDNRIFKDRVVNIGKVTYDVAKDHAFSGVMVRGSGIPYDLRKI 242
Query: 255 DPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEM---GPPSGPY-KVED 310
Y Y E +F++P GD R ++R E+ + I+ Q+ E G + P+ K +
Sbjct: 243 YNYENYNEFNFKIPVGLNGDCYDRFMIRVTEMRESCSIIAQVCERITDGFITVPFAKFVN 302
Query: 311 PRLKN--------LPRFK-------VPAGDAFAHVESTKGDFGAYVVS-DGSHKPYRVHV 354
P + + FK VP + VE+ KG+FG + S + KPYR H+
Sbjct: 303 PTRSDMKHLMEALIQHFKFFSNGIIVPEAIMYTSVEAPKGEFGTLIASYQNNTKPYRCHI 362
Query: 355 RGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
R P H + + ++ +ADV I+ +LD ++DR
Sbjct: 363 RAPGF-HHLAAINRVSQNHSLADVVAIIGTLDIVFGEVDR 401
>sp|P15689|NUCM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|84291|pir||S07733 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) 46K chain - Paramecium
tetraurelia mitochondrion >gi|578751|emb|CAA34042.1|
(X15917) ORF400 protein (AA 1-400) [Paramecium aurelia]
>gi|1019629|gb|AAA79254.1| (M26930) ORF 400 [Paramecium
aurelia]
Length = 400
Score = 148 bits (369), Expect = 1e-34
Identities = 114/394 (28%), Positives = 187/394 (46%), Gaps = 33/394 (8%)
Query: 33 FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPE 91
FGPQH A +IL+++G V K + G LHRG EKL E +P+ ++ R+
Sbjct: 8 FGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYFDRLDYVS 67
Query: 92 SDVPEAIYSLAVDEIIGW-EVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQW 150
V E Y LA++ ++ +RT E+ R+ ++ I + +G ++ W
Sbjct: 68 MMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIGSMSSIFW 127
Query: 151 AAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNL 210
A RE++M +E + G R++ + P V + K L + + + L + N+
Sbjct: 128 AFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNCLTTLSEMHNI 187
Query: 211 VFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKD--DPYLLYPELDFEVP 268
+ N I +R+ IG + K L G+TG R+TG+ D+R D D Y Y L+F
Sbjct: 188 LTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANYYYLNFRSY 247
Query: 269 TLREGDALARALVRRYELEQDLYILEQLL--------EMGPPS------------GPYKV 308
T + GD+ R L+R E+ + + I+ Q + P S YK
Sbjct: 248 TGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNKKKFISQTYKN 307
Query: 309 EDPRLKNL--------PRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIA 360
E ++ L FK+ + + VES KG+FG +VSDGS+KPYR VR P+
Sbjct: 308 EYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEFGVTLVSDGSNKPYRCKVRSPAY- 366
Query: 361 HGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
H ++VL ++ G +AD+ ++ ++D +IDR
Sbjct: 367 HHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 400
>gi|8928603 NADH dehydrogenase subunit 7 [Paramecium aurelia]
Length = 422
Score = 148 bits (369), Expect = 1e-34
Identities = 114/394 (28%), Positives = 187/394 (46%), Gaps = 33/394 (8%)
Query: 33 FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPE 91
FGPQH A +IL+++G V K + G LHRG EKL E +P+ ++ R+
Sbjct: 30 FGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYFDRLDYVS 89
Query: 92 SDVPEAIYSLAVDEIIGW-EVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQW 150
V E Y LA++ ++ +RT E+ R+ ++ I + +G ++ W
Sbjct: 90 MMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIGSMSSIFW 149
Query: 151 AAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNL 210
A RE++M +E + G R++ + P V + K L + + + L + N+
Sbjct: 150 AFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNCLTTLSEMHNI 209
Query: 211 VFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKD--DPYLLYPELDFEVP 268
+ N I +R+ IG + K L G+TG R+TG+ D+R D D Y Y L+F
Sbjct: 210 LTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANYYYLNFRSY 269
Query: 269 TLREGDALARALVRRYELEQDLYILEQLL--------EMGPPS------------GPYKV 308
T + GD+ R L+R E+ + + I+ Q + P S YK
Sbjct: 270 TGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNKKKFISQTYKN 329
Query: 309 EDPRLKNL--------PRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIA 360
E ++ L FK+ + + VES KG+FG +VSDGS+KPYR VR P+
Sbjct: 330 EYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEFGVTLVSDGSNKPYRCKVRSPAY- 388
Query: 361 HGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
H ++VL ++ G +AD+ ++ ++D +IDR
Sbjct: 389 HHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 422
>pir||B75115 co-induced hydrogenase related, chain H PAB1892 - Pyrococcus abyssi
(strain Orsay) >gi|5458146|emb|CAB49635.1| (AJ248285)
CO-induced hydrogenase related, subunit H [Pyrococcus
abyssi]
Length = 426
Score = 141 bits (352), Expect = 1e-32
Identities = 113/380 (29%), Positives = 177/380 (45%), Gaps = 29/380 (7%)
Query: 33 FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPE 91
FGP H E IL +DG R+V G+ RG + +A R + + + RIC
Sbjct: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
Query: 92 SDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWA 151
S Y AV+E+ G EVPERA++IR + E+ R+ ++L + L +G T
Sbjct: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
Query: 152 AAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLV 211
RE++M + E +TG RV + GGVRRDI +K R L D ++Y + +P +++
Sbjct: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIE-EKHRRLLLDMIKYYREIMPQIEDVF 190
Query: 212 FENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLR 271
+ R+ ++ KK A+ G GP R +GV D R + +YP+L + P +
Sbjct: 191 LHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMP 249
Query: 272 E--------GDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPA 323
E GD RA VR E+ Q L ++E L+ P ++K P+ V
Sbjct: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKG--------KIKTFPKDNVLV 301
Query: 324 --------GDAFAHVESTKGDFGAYVV-SDGSHKPYRVHVRGPSIAHGIRVLEQLLVGAR 374
G+ E+ +G+ YV G P R +R P+ + + + + L G +
Sbjct: 302 AKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPN-LFAIAKGLEGNQ 360
Query: 375 IADVPVILMSLDNCPPDIDR 394
+ADV V + S+D C DR
Sbjct: 361 LADVVVAIASIDPCLSCTDR 380
>pir||H71017 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257861|dbj|BAA30544.1| (AP000006) 427aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 427
Score = 138 bits (344), Expect = 1e-31
Identities = 112/382 (29%), Positives = 177/382 (46%), Gaps = 33/382 (8%)
Query: 33 FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPE 91
FGP H E IL +DG R+V G+ RG + +A R + + L RIC
Sbjct: 13 FGPIHPGLEEPEKFILTLDGERIVNVDIKLGYNLRGIQWIAFRRNYVQLMYLAERICGIC 72
Query: 92 SDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWA 151
S Y AV+E+ G EVPERA++IR + E+ R+ ++L + + +G T
Sbjct: 73 SFSHNHTYVRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHDIGYDTVLHLT 132
Query: 152 AAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLV 211
RE++M E +TG RV + GGVRRDI +K R L D ++Y + +P +++
Sbjct: 133 WLAREKVMDALEAITGNRVNYSMMTIGGVRRDIE-EKHKRLLLDMIKYYREIMPQIEDVF 191
Query: 212 FENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLR 271
+ R+ V+ +K A+ G GP R +G+ D R + +YP+L + P +
Sbjct: 192 LHDSTIEARLRNCAVVPRKLAIEMGAVGPTGRGSGIKDDARWSEKLGVYPDLGIK-PVMP 250
Query: 272 E--------GDALARALVRRYELEQDLYILEQLLEMGP-------PSGPYKVEDPRL--- 313
E GD R VR E+ Q L ++E L+ P P V +L
Sbjct: 251 EDVTGEKARGDVYDRTAVRIGEIYQSLELIEHALDQMPEGKIKAFPKDNILVAKLKLLGD 310
Query: 314 -KNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVG 372
+ + R++ P G+ +V+ KG G P R +R P+ + + + + L G
Sbjct: 311 GEGIGRYEAPRGELIHYVKGKKGRDG----------PVRWKMREPTFPN-LFTIAKGLEG 359
Query: 373 ARIADVPVILMSLDNCPPDIDR 394
++ADV V + S+D C DR
Sbjct: 360 NQLADVVVAIASIDPCLSCTDR 381
>sp|P16431|HYCE_ECOLI FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (FHL SUBUNIT 5)
(HYDROGENASE-3 COMPONENT E) >gi|78775|pir||S08623
hydrogenase (EC 1.18.99.1) 3 chain 5 precursor -
Escherichia coli >gi|41684|emb|CAA35550.1| (X17506) hycE
[Escherichia coli] >gi|882614|gb|AAA69231.1| (U29579)
formate hydrogenlyase subunit 5 [Escherichia coli]
>gi|1789076|gb|AAC75763.1| (AE000356) large subunit of
hydrogenase 3 (part of FHL complex) [Escherichia coli
K12] >gi|1093498|prf||2104213E hycE gene [Escherichia
coli]
Length = 569
Score = 136 bits (338), Expect = 6e-31
Identities = 118/405 (29%), Positives = 189/405 (46%), Gaps = 41/405 (10%)
Query: 20 ELYPIEKD---------------TYELF------------FGPQHMAT-ENFSIILKMDG 51
ELYP+ KD TYE GP H+ + E L +DG
Sbjct: 144 ELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDG 203
Query: 52 NRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLL-RICVPESDVPEAIYSLAVDEIIGWE 110
++ A ++HRG EKLAE R Y + L R+C Y+ +V+ +G +
Sbjct: 204 ENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQ 263
Query: 111 VPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAG-QWAAAYRERLMRLFEELTGAR 169
VPERAQ IR +LE+ R+ ++L +GL+ + +G RE M++ E LTGAR
Sbjct: 264 VPERAQMIRAILLEVERLHSHLL-NLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGAR 322
Query: 170 VYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDK 229
+ + GG+RRD+ D + Q + + ++ ++ + +++ +R GIG +D
Sbjct: 323 KTYGLNLIGGIRRDLLKDDMI-QTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDP 381
Query: 230 KFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLREGDALARALVRRYELEQD 289
+ A GP +RA+G A D R D P++ Y L EV + + D ++R VR E+
Sbjct: 382 EIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTA 441
Query: 290 LYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKP 349
L +++ L+ P GP VE +P A E+ +GD + ++ + K
Sbjct: 442 LNMIDYGLD-NLPGGPLMVEGFTY-------IPHRFALGFAEAPRGDDIHWSMTGDNQKL 493
Query: 350 YRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
YR R + A+ L +L G ++D P+I+ SLD C DR
Sbjct: 494 YRWRCRAATYANW-PTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
>gi|11466264 NADH dehydrogenase subunit 7 [Tetrahymena pyriformis]
>gi|5306140|gb|AAD41924.1|AF160864_12 (AF160864) NADH
dehydrogenase subunit 7 [Tetrahymena pyriformis]
Length = 442
Score = 125 bits (312), Expect = 7e-28
Identities = 111/419 (26%), Positives = 179/419 (42%), Gaps = 53/419 (12%)
Query: 28 TYELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLR 86
T + FGPQH A +IL+++G + + G LHRG EKL E RP+ + R
Sbjct: 25 TMNVNFGPQHPAAHGVLRLILQLNGEIAERFDPHIGLLHRGSEKLIEDRPYLQGMPYFDR 84
Query: 87 ICVPESDVPEAIYSLAVDEIIGW-EVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVY 145
V E Y L ++ ++G IRT E+ R+ +L + + +G
Sbjct: 85 FDYVSMMVQEHAYCLGIESLLGTTNYSATFTQIRTMYDELTRILNHLLAVACHALDVGSM 144
Query: 146 TAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLP 205
++ WA RE+LM +E + GAR++ + P V + L + + + L
Sbjct: 145 SSVFWAFEEREKLMEFYERVCGARMHAAFYRPNEVNLNAVSSFLLEDILEFSRNFFTTLN 204
Query: 206 DFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVR--KDDPYLLYPEL 263
+ N++ N I +R+ IG + L G+TG R+ G+ D+R K + Y Y L
Sbjct: 205 EMHNVLTYNKIWKQRLINIGTYSFQTCLDYGLTGVMARSCGIKRDLRLSKTETYANYYYL 264
Query: 264 DFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSG------------------- 304
+F + GD R L+R E+ + L I+ Q +
Sbjct: 265 NFRSYVGQHGDCYDRFLIRMNEMCESLNIVNQSINKISKYNNIKSIKNNSNILNKDSFNR 324
Query: 305 -----PYKV------EDPRLKNLPR------------------FKVPAGDAFAHVESTKG 335
P+ V D +KN KV G F VES KG
Sbjct: 325 QTTILPHMVLNYLNKNDLNIKNTKNDYNSMEELINHFKFWSKGIKVEPGYTFQSVESPKG 384
Query: 336 DFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNCPPDIDR 394
+FG ++SDGS KPY+ VR P+ H ++VL ++ G +AD+ ++ ++D ++DR
Sbjct: 385 EFGVSMLSDGSAKPYKCKVRSPAY-HHLQVLPKIGKGHFLADLVALVGTVDIVFGEVDR 442
>sp|P77329|HYFG_ECOLI HYDROGENASE-4 COMPONENT G >gi|7432639|pir||F65024 hypothetical
protein b2487 - Escherichia coli (strain K-12)
>gi|1616956|gb|AAB88569.1| (M63654) HyfG [Escherichia
coli] >gi|1788832|gb|AAC75540.1| (AE000335) hydrogenase
4 subunit [Escherichia coli K12]
Length = 555
Score = 122 bits (302), Expect = 1e-26
Identities = 112/382 (29%), Positives = 178/382 (46%), Gaps = 34/382 (8%)
Query: 20 ELYPI----EKDTYELFFGPQHMAT-ENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEY 74
E YP D + GP H+ + E L +DG ++V A ++HRG EKLAE
Sbjct: 169 ETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAET 228
Query: 75 RPWYTNIALLL-RICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLF 133
R Y + L R+C Y+ +V+ +G EVP+RA IR+ +LE+ R+ ++L
Sbjct: 229 RMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLL 288
Query: 134 WIMGLSFK-LGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQ 192
+GLS +G T RE+ M + E L G+R + + GGVRRDI ++ L+
Sbjct: 289 -NLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQT 347
Query: 193 LKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVR 252
LK V +++ + + ++ +R +GIG++D++ +A D+R
Sbjct: 348 LK-LVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLR 390
Query: 253 KDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPR 312
D PY Y + + T GD +R +VR E L +LE L+ P P E
Sbjct: 391 FDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD-NMPDTPLLTEGFS 449
Query: 313 LKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVG 372
K P A VE+ +G+ + + + K +R R + A+ VL +L G
Sbjct: 450 YK-------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW-PVLRYMLRG 501
Query: 373 ARIADVPVILMSLDNCPPDIDR 394
++D P+I+ SLD C DR
Sbjct: 502 NTVSDAPLIIGSLDPCYSCTDR 523
>dbj|BAA16375.1| (D90877) FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (FHL SUBUNIT 5)
(HYDROGENASE 3, SUBUNIT 5). [Escherichia coli]
Length = 570
Score = 122 bits (302), Expect = 1e-26
Identities = 112/382 (29%), Positives = 178/382 (46%), Gaps = 34/382 (8%)
Query: 20 ELYPI----EKDTYELFFGPQHMAT-ENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEY 74
E YP D + GP H+ + E L +DG ++V A ++HRG EKLAE
Sbjct: 184 ETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAET 243
Query: 75 RPWYTNIALLL-RICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLF 133
R Y + L R+C Y+ +V+ +G EVP+RA IR+ +LE+ R+ ++L
Sbjct: 244 RMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLL 303
Query: 134 WIMGLSFK-LGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQ 192
+GLS +G T RE+ M + E L G+R + + GGVRRDI ++ L+
Sbjct: 304 -NLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQT 362
Query: 193 LKDTVEYIKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVR 252
LK V +++ + + ++ +R +GIG++D++ +A D+R
Sbjct: 363 LK-LVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLR 405
Query: 253 KDDPYLLYPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPR 312
D PY Y + + T GD +R +VR E L +LE L+ P P E
Sbjct: 406 FDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD-NMPDTPLLTEGFS 464
Query: 313 LKNLPRFKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVG 372
K P A VE+ +G+ + + + K +R R + A+ VL +L G
Sbjct: 465 YK-------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW-PVLRYMLRG 516
Query: 373 ARIADVPVILMSLDNCPPDIDR 394
++D P+I+ SLD C DR
Sbjct: 517 NTVSDAPLIIGSLDPCYSCTDR 538
>pir||D69032 formate hydrogenlyase, subunit 5 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622350|gb|AAB85727.1| (AE000891) formate
hydrogenlyase, subunit 5 [Methanobacterium
thermoautotrophicum]
Length = 381
Score = 118 bits (294), Expect = 9e-26
Identities = 107/371 (28%), Positives = 178/371 (47%), Gaps = 22/371 (5%)
Query: 30 ELFFGPQHMAT-ENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRIC 88
E+ GP H A E + + L ++ V A G HRG E++ E P +L ++C
Sbjct: 14 EIAMGPVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEGLPVEKANSLTEKVC 73
Query: 89 VPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAG 148
S V L ++ +G E+PERA +IR + E+ R+ ++L ++ + LG T
Sbjct: 74 GICSGVHLWNSVLVAEKGLGVEIPERASYIRIIIGELERLHSHLLYLAHGNEVLGHETFS 133
Query: 149 QWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKW-LRQLKDTVEYIKSKLPDF 207
RE +M L + G RV + I GG+R D+ ++++++ ++ I+ K+ F
Sbjct: 134 MRLFYIRETVMELLRLIGGNRVQYGVPIIGGIRPRADLDEMKVQRIREGIDLIEEKVEAF 193
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
+ + R+ G+ + +K AL VTGP LRATGV D+R++ P Y +FEV
Sbjct: 194 AERFTSDPMIMSRITGVCPISRKDALRLHVTGPTLRATGVDLDIRREMP--CYDPFEFEV 251
Query: 268 PTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGDAF 327
T EGD A L+R E+ + + I+ Q L P KV D + G
Sbjct: 252 ITQDEGDVRANLLMRVLEIFESVKIIRQALRDLPGG---KVVDRSWE-----MQDTGIIK 303
Query: 328 AHVESTKGD-FGAYVVSDGSHKPYRVH---VRGPSIAHGIRVLEQLLVGARIADVPVILM 383
++VE+ +G + +Y + DG RV +R PS+++ I ++ +G I D + ++
Sbjct: 304 SYVEAPRGRLYHSYAIEDG-----RVRGSVIRTPSMSN-IGAMQYACIGHHITDAQLGIV 357
Query: 384 SLDNCPPDIDR 394
D C DR
Sbjct: 358 QCDPCFTCTDR 368
>emb|CAB52791.1| (AJ243656) hydrogenase large subunit [Methanobacterium
thermoautotrophicum]
Length = 376
Score = 115 bits (284), Expect = 1e-24
Identities = 105/371 (28%), Positives = 174/371 (46%), Gaps = 22/371 (5%)
Query: 30 ELFFGPQHMAT-ENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRIC 88
E+ G H A E + + L ++ V A G HRG E++ E P +L ++C
Sbjct: 11 EITMGTVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEGLPVEKANSLTEKVC 70
Query: 89 VPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAG 148
S V L ++ +G E+PERA +IR V E+ R+ ++L ++ + LG T
Sbjct: 71 GICSGVHLWNSILVAEKGLGVEIPERASYIRIIVGELERIHSHLLYLAHGNEVLGHETFS 130
Query: 149 QWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQ-LKDTVEYIKSKLPDF 207
RE +M L + G RV + I GG+R D+ Q + + +++I+ K+ F
Sbjct: 131 MRLFYIRETVMELLRLIGGNRVQYGVPIIGGIRPRADLDEMKTQRISEGMDFIEEKVEAF 190
Query: 208 DNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEV 267
+ + R+ G+ + +K AL VTGP LRATGV +D+R + P Y +F+V
Sbjct: 191 AERFTSDPMVMSRITGVCPISRKDALRLHVTGPTLRATGVEFDLRTEMP--CYDPFEFDV 248
Query: 268 PTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGDAF 327
T GD A L+R E+ + + I+ Q L P D R+ + G
Sbjct: 249 ITQDGGDVRANLLMRVLEIFESINIIRQALRDLP--------DGRVVDRNWEMQDTGIVK 300
Query: 328 AHVESTKGD-FGAYVVSDGSHKPYRVH---VRGPSIAHGIRVLEQLLVGARIADVPVILM 383
++VE+ +G + +Y + DG RV +R PS+++ I ++ +G I D + ++
Sbjct: 301 SYVEAPRGRLYHSYAIEDG-----RVRGSIIRTPSMSN-IGAMQYACIGHHITDAQLGIV 354
Query: 384 SLDNCPPDIDR 394
D C DR
Sbjct: 355 QCDPCFTCTDR 365
>emb|CAB52770.1| (AJ243655) hydrogenase large subunit [Methanobacterium
thermoautotrophicum]
Length = 370
Score = 113 bits (281), Expect = 3e-24
Identities = 97/357 (27%), Positives = 161/357 (44%), Gaps = 15/357 (4%)
Query: 34 GPQHMA-TENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPES 92
GP H E + +K G +V+KA G++HRG E++ + W I L R+C S
Sbjct: 6 GPMHPGYKEPIRLKVKTRGEKVLKAEIEYGYVHRGIERVMRNKTWQKAIYLSERVCGICS 65
Query: 93 DVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWAA 152
+ ++ A + I E P RAQ++R E+ R+ ++L L T +
Sbjct: 66 YIHTQTFAEAFEAISEVEAPPRAQFLRALTNELDRIQSHLIANSTYFKALDHETMFMYML 125
Query: 153 AYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVF 212
A RE +M E LTG RV + + GGVR D D L ++++ + ++ + + +
Sbjct: 126 ALREPVMDAIELLTGNRVNMGWNVVGGVRMDASEDH-LSRIREIIVDLEREFDRYVEMFE 184
Query: 213 ENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLRE 272
+ R +G M ++ A GP RA+G+ YD R+D P LDF E
Sbjct: 185 HGPLIGLRSRDVGYMSREEAEKARAVGPIGRASGIRYDFREDHP-TYRDHLDFRTIWRDE 243
Query: 273 GDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGDAFAHVES 332
GD AR + R E+ + +++Q+++ PSGP + + V AG E+
Sbjct: 244 GDNFARVMNRFDEIRVSIDLIKQVID-SIPSGPVR---------RKVDVKAGYGEWRNEA 293
Query: 333 TKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVG-ARIADVPVILMSLDNC 388
+G+ AY++ + + +R PSI + + +L A +AD S D C
Sbjct: 294 PRGEV-AYMIETNGNLIKNISIRTPSIMNIDACAKYMLRDVATVADAVATYASADPC 349
>pir||F69151 formate hydrogenlyase, subunit 5 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621460|gb|AAB84904.1| (AE000824) formate
hydrogenlyase, subunit 5 [Methanobacterium
thermoautotrophicum]
Length = 370
Score = 109 bits (271), Expect = 4e-23
Identities = 94/357 (26%), Positives = 159/357 (44%), Gaps = 15/357 (4%)
Query: 34 GPQHMA-TENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPES 92
GP H E + +K G +V+KA G++HRG E++ + W I L R+C S
Sbjct: 6 GPMHPGYKEPIRLKVKTRGEKVLKAEIEYGYVHRGIERVMRNKTWQKAIYLSERVCGICS 65
Query: 93 DVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWAA 152
+ ++ A + I E P RAQ++R E+ R+ ++L L T +
Sbjct: 66 YIHTQTFAEAFEAISEVEAPPRAQFLRALTNELDRIQSHLIANSTYFKALDHETMFMYML 125
Query: 153 AYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVF 212
A RE +M E LTG RV + + GGVR D + L +++ + ++ + + +
Sbjct: 126 ALREPVMDAIELLTGNRVNMGWNVVGGVRMD-ASESHLSMIREIIVDLEREFDRYVEMFE 184
Query: 213 ENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLRE 272
+ R +G M ++ A GP RA+G+ YD R+D P LDF +
Sbjct: 185 HGPLIGLRSREVGYMSQEEAEKARAVGPIGRASGIRYDFREDHP-TYRDHLDFRTIWRDD 243
Query: 273 GDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGDAFAHVES 332
GD AR + R E+ + +++Q+++ P GP + + V AG E+
Sbjct: 244 GDNFARVMNRFDEIRVSIDLIKQVID-DMPGGPVRT---------KVDVKAGYGEWRNEA 293
Query: 333 TKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVG-ARIADVPVILMSLDNC 388
+G+ AY++ + + +R PSI + + +L A +AD S D C
Sbjct: 294 PRGEV-AYMIETNGNLIKNISIRTPSIMNIDACAKYMLRDVATVADAVATYASADPC 349
>pir||C64364 formate hydrogenlyase, subunit 5 - Methanococcus jannaschii
>gi|1591218|gb|AAB98504.1| (U67501) carbon monoxide
dehydrogenase, hydrogenase subunit CooH (cooH)
[Methanococcus jannaschii]
Length = 380
Score = 104 bits (258), Expect = 1e-21
Identities = 96/360 (26%), Positives = 161/360 (44%), Gaps = 19/360 (5%)
Query: 34 GPQH-MATENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPES 92
GP H + E I L +DG + V A G++HRG EK+ E + + I L R+C S
Sbjct: 11 GPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIHLAERVCGICS 70
Query: 93 DVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWAA 152
V ++ ++ I E+P++A+++R E+ R+ ++L + + T W
Sbjct: 71 YVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIEHETLAMWLL 130
Query: 153 AYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVF 212
RE +M L E +TG RV Y + GGVRRDI + + ++ ++ + +L + +
Sbjct: 131 NVREIIMDLMEMITGNRVNMGYNVIGGVRRDI-NREMMDEIYKKLDIFEDELKNIIEVFE 189
Query: 213 ENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGV-AYDVRKDDPYLLYPELDFEVPTLR 271
+ R + IG++ + GP R +G+ D R + Y EL F+
Sbjct: 190 TGPLIALRSKEIGILPYHEVMRTRAVGPICRGSGLPESDWRL--RHSTYQELKFKPVWRE 247
Query: 272 EGDALARALVRRYELEQDLYILEQLLE-MGPPSGPYKV--EDPRLKNLPRFKVPAGDAFA 328
EGD AR +VR E+ + + ++ + LE SG +V E K R + P G+
Sbjct: 248 EGDNFARMMVRHEEIIESVRLIREALEHYEECSGDIRVKAEIKGGKGEWRNEAPRGEVTY 307
Query: 329 HVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNC 388
+E T G G K R+ +R P++ + L +AD S+D C
Sbjct: 308 RMEITDG---------GIIK--RIMIRTPTVMNLEAYKYMLKTCPTVADAVSAYTSIDPC 356
>pir||A42957 carbon monoxide-induced hydrogenase - Rhodospirillum rubrum
(fragment)
Length = 188
Score = 101 bits (250), Expect = 1e-20
Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 9/169 (5%)
Query: 220 RMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLREGDALARA 279
R GIGV+ + G+ GP R +G AYDVRK PY +Y LDFE+ GD +RA
Sbjct: 23 RTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLDFEMALGEHGDVWSRA 82
Query: 280 LVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGDAFAHVESTKGDFGA 339
+VR E + ++ Q L P GP K P +PAG+A A E+ +G+
Sbjct: 83 MVRWQEALTSIGLIRQCLR-DMPDGPTKAG-------PVPPIPAGEAVAKTEAPRGELIY 134
Query: 340 YVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLDNC 388
Y+ ++G+ +P R+ R P+ + L ++ GARI+D+P+I+ S+D C
Sbjct: 135 YLKTNGTDRPERLKWRVPTYMNW-DALNVMMAGARISDIPLIVNSIDPC 182
>pir||B64428 formate hydrogenlyase, subunit 5 - Methanococcus jannaschii
>gi|1499869|gb|AAB99031.1| (U67545) formate
hydrogenlyase, subunit 5 [Methanococcus jannaschii]
Length = 377
Score = 100 bits (247), Expect = 3e-20
Identities = 98/368 (26%), Positives = 167/368 (44%), Gaps = 11/368 (2%)
Query: 30 ELFFGPQHMAT-ENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRIC 88
E+ GP H E + L ++ + +A G +RG E + E P L +IC
Sbjct: 9 EIAIGPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKIC 68
Query: 89 VPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFK-LGVYTA 147
S + + EVPERA++IR V E+ R+ +++ + G +F+ LG T
Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHML-LFGHAFEVLGFETM 127
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVR-RDIPGDKWLRQLKDTVEYIKSKLPD 206
A RE +M++ E+TG R + I GG+R R + + L + +E + L
Sbjct: 128 AFRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLKK 187
Query: 207 FDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFE 266
+ + R++ +GV+DKK A GP R +G+ D+RK +Y +FE
Sbjct: 188 LLERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDNFEFE 247
Query: 267 VPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGDA 326
+GD +R VR YE + + I+ Q L+ P+ ++ +P + L FK
Sbjct: 248 EIVFDDGDVFSRLAVRFYECFESVKIIRQGLK-DLPNLDKRIYNPNYE-LKEFK----PI 301
Query: 327 FAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADVPVILMSLD 386
+ E+ +G D + + +V +R P+ A + +E +L G ++D +I+ S D
Sbjct: 302 DVYNEAQRGQVYYSYGLDENGRVRQVKIRTPT-ATNLACMEAILPGHHVSDAELIIASCD 360
Query: 387 NCPPDIDR 394
C DR
Sbjct: 361 PCFTCTDR 368
>pir||G70749 probable hycE protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1405757|emb|CAA98923.1| (Z74410) hycE [Mycobacterium
tuberculosis]
Length = 492
Score = 97.5 bits (239), Expect = 2e-19
Identities = 80/273 (29%), Positives = 119/273 (43%), Gaps = 14/273 (5%)
Query: 29 YELFFGPQHMAT-ENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
YE+ GP H E + G +V+ A F+HRG EKL RP + L RI
Sbjct: 143 YEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERI 202
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
S +SLA+++ +G E+P +R ++E+ R+ + + L+ +G A
Sbjct: 203 SGDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLA 262
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEY--IKSKLP 205
A RE L+R +TG R+ GGV LR L DT E + L
Sbjct: 263 NAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVA--------LRALPDTDELAALAVDLA 314
Query: 206 DFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDF 265
+ L N + Y R G V+ A A G G RA+G+ D R + P ++ P +
Sbjct: 315 EVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVLPITEI 374
Query: 266 EVPTLREGDALARALVRRYELEQDLYILEQLLE 298
P +GD LAR VRR E + + ++E
Sbjct: 375 GAP---DGDVLARYTVRRDEFAASAALAQHIVE 404
>gb|AAA74515.1| (L07537) NADH dehydrogenase subunit 7 [Leishmania tarentolae]
Length = 398
Score = 75.7 bits (183), Expect = 9e-13
Identities = 86/387 (22%), Positives = 160/387 (41%), Gaps = 32/387 (8%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYR------PWYTNI 81
Y FGPQH A +L + G + G+LHRG EKL EY+ P++ +
Sbjct: 23 YRFTFGPQHPAAHGVLCCLLYLSGEFITYIDVIIGYLHRGTEKLCEYKTVEQCLPYFDRL 82
Query: 82 ALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFK 141
+ +C E + SL + ++ + R ++R + E R L +
Sbjct: 83 DYVSVVC------NEHLLSLCFEYMLRCCLAIRCAFMRLLMCEFTRCFNGLLCCSCMVMD 136
Query: 142 LGVYTAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGD--KWLRQLKDTVEY 199
+G + W+ R++LM F+ G R++ + G+ D +L L + +
Sbjct: 137 IGSLSPMLWSFEERDKLMTFFDLCCGCRMHLAFMCLLGLLDDFVFGFIDFLLMLCISCLF 196
Query: 200 IKSKLPDFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLL 259
+ L +D L N + Y R+ G+ D ++G R+ G+ +DVR Y L
Sbjct: 197 V---LDLYDLLFVGNRLLYLRLRGLAFFDIFDLCFNSISGCLSRSLGMVWDVRLYSCYEL 253
Query: 260 YPELDFEVPTLREGDALARALVRRYELEQDLYILEQLLEMG------PPSGPYKVEDPRL 313
Y L F+ GDA R +R +++ + + +Q +G Y D +
Sbjct: 254 YFMLVFDYCFCYLGDAFDRLFLRLFDMRMSILLCKQCFFVGFFVFGFVCLFDYMYVDVTI 313
Query: 314 KNLPRF------KVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLE 367
+ + + G +FA+VE KG++ ++ R+ +R H I +L+
Sbjct: 314 ETIISLFYSLWCCILPGCSFANVEHPKGEYSLFLCFLYGFIS-RLRIRCADFVH-ICLLD 371
Query: 368 QLLVGARIADVPVILMSLDNCPPDIDR 394
++ G + D+ ++ ++D +DR
Sbjct: 372 VMMRGFMLHDLVAVIGNVDVVFGSVDR 398
>sp|P21301|NUCM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT HOMOLOG (NADH
DEHYDROGENASE SUBUNIT 7 HOMOLOG) >gi|102130|pir||A35693
NADH dehydrogenase (EC 1.6.99.3) chain 7 - Trypanosoma
brucei mitochondrion
Length = 386
Score = 73.7 bits (178), Expect = 3e-12
Identities = 67/275 (24%), Positives = 116/275 (41%), Gaps = 6/275 (2%)
Query: 29 YELFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRI 87
Y FGPQH A +L G +V G+LHRG EKL EY+ + R+
Sbjct: 11 YRFTFGPQHPAAHGVLCCLLYFCGEFIVYIDCIIGYLHRGTEKLCEYKSVEQCLPYFDRL 70
Query: 88 CVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTA 147
E + SL + ++ + R ++R ++E R L I + LG +
Sbjct: 71 DYVSVCCNEHLLSLCFEYMLRCCLSLRCAFMRLLIVEFTRSFNGLLCISCMVLDLGCLSP 130
Query: 148 GQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGD--KWLRQLKDTVEYIKSKLP 205
W+ R++LM F+ G R++ + + G+ D +L L + ++ +
Sbjct: 131 LLWSFEERDKLMTFFDLCCGCRMHLAFMVLLGILDDFVFGFVDFLLLLIISCLFV---MD 187
Query: 206 DFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDF 265
+D L N + Y R+ G+ D + ++G R+ G+ +D R Y LY +
Sbjct: 188 CYDLLFVGNRLFYLRLRGLSFFDLYDLVFNSLSGVLSRSLGMVWDCRLFSCYELYFMFCY 247
Query: 266 EVPTLREGDALARALVRRYELEQDLYILEQLLEMG 300
+ GDA R +R +++ L I +Q +G
Sbjct: 248 DYCFCFIGDAFDRLFLRLFDMRMSLLICKQCFFVG 282
>gi|9838442 orf155b [Beta vulgaris] >gi|9087304|dbj|BAA99448.1| (AP000397)
orf155b [Beta vulgaris]
Length = 155
Score = 73.4 bits (177), Expect = 4e-12
Identities = 44/148 (29%), Positives = 77/148 (51%), Gaps = 1/148 (0%)
Query: 96 EAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWAAAYR 155
E +S AV+ ++ EVP RAQ+IR E+ R+S + + + +G T WA R
Sbjct: 5 EHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWAFEER 64
Query: 156 ERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLVFENY 215
E+L+ +E + GAR++ + PGGV +D+P R + + + S++ + + + N
Sbjct: 65 EKLLEFYERVPGARMHASFIRPGGVAQDLPLG-LCRDIDSSTQQFASRIDELEEMSTGNR 123
Query: 216 ITYRRMEGIGVMDKKFALAEGVTGPNLR 243
I +R+ IG + + A G +G LR
Sbjct: 124 IWKQRLVDIGTVTAQQAKDWGFSGVMLR 151
>gb|AAK41286.1| Formate hydrogenlyase subunit 5 (hycE) [Sulfolobus solfataricus]
Length = 391
Score = 71.0 bits (171), Expect = 2e-11
Identities = 70/256 (27%), Positives = 105/256 (40%), Gaps = 20/256 (7%)
Query: 86 RICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVY 145
RI P S + LAV++ + E Q R +E+ R+ +LF I L+ +
Sbjct: 102 RINAPFSASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRNHLFVISRLTETTSLN 161
Query: 146 TAGQWAAAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLP 205
E++ RL ++ G R + GV D LR + T E+ +
Sbjct: 162 VPTYHLLHLVEKVNRLIGKMCGHRYFFGVNAINGVNCDF--GNLLRIIDITKEFKQI--- 216
Query: 206 DFDNLVFENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDF 265
FD L+ R E ++D E GP RA G+AYD RKD L Y +L F
Sbjct: 217 -FDGLLESRIFIDRLQENGKIID------ENSIGPAARAAGLAYDARKDFKALPYEDLGF 269
Query: 266 EVPTLREGDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPAGD 325
+E D+ R LVR E+ + IL +L + ++++ + K G+
Sbjct: 270 RTVITQEADSFGRFLVRGMEIIESAKILVELHD--------EIKNSNNERGKNHKQGGGE 321
Query: 326 AFAHVESTKGDFGAYV 341
A VES GD YV
Sbjct: 322 GLARVESPSGDLAYYV 337
>dbj|BAA73742.1| (AB020539) ORFI, similar to NADH dehydrogenase [Wolbachia sp.]
Length = 88
Score = 71.0 bits (171), Expect = 2e-11
Identities = 33/76 (43%), Positives = 51/76 (66%), Gaps = 1/76 (1%)
Query: 319 FKVPAGDAFAHVESTKGDFGAYVVSDGSHKPYRVHVRGPSIAHGIRVLEQLLVGARIADV 378
+ VP G+A+ VE+ KG+FG Y+VSDG+++PYR +R P AH ++ L+ + G +AD+
Sbjct: 14 YHVPEGEAYVAVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAH-LQALDFMSKGHMLADI 72
Query: 379 PVILMSLDNCPPDIDR 394
I+ SLD +IDR
Sbjct: 73 AAIIGSLDIVFGEIDR 88
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.430
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156254607
Number of Sequences: 2977
Number of extensions: 6963255
Number of successful extensions: 13891
Number of sequences better than 1.0e-10: 102
Number of HSP's better than 0.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 13526
Number of HSP's gapped (non-prelim): 109
length of query: 394
length of database: 189,106,746
effective HSP length: 52
effective length of query: 342
effective length of database: 157,985,422
effective search space: 54031014324
effective search space used: 54031014324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)