BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0496 (nuoI) DE:NADH dehydrogenase I, SUBUNIT I
(214 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75114 NADH dehydrogenase I, chain I PAB0496 - Pyrococcus a... 467 e-131
pir||A71019 probable NADH-plastoquinone oxidoreductase subunit -... 415 e-115
pir||G72281 glutamate synthase, beta subunit - Thermotoga mariti... 111 9e-24
emb|CAB44669.1| (AJ242867) NDH-I protein [Anabaena PCC7120] 84 1e-15
gi|11500028 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxid... 83 3e-15
sp|Q00236|NUIC_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I... 82 8e-15
sp|P26525|NUIC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I... 80 2e-14
gi|11466019 NADH dehydrogenase 18kD subunit [Nicotiana tabacum] ... 80 2e-14
gi|11466756 frxB [Marchantia polymorpha] >gi|120536|sp|P06253|NU... 80 3e-14
gi|11467871 subunit I of NADH-plastoquinoneoxidoreductase [Nephr... 80 3e-14
gi|11497585 NADH dehydrogenase 18kD subunit [Spinacia oleracea] ... 78 7e-14
gb|AAK40661.1| NADH dehydrogenase subunit I (NuoI) [Sulfolobus ... 78 1e-13
gb|AAF65736.1|AF228525_6 (AF228525) F420H2 dehydrogenase subunit... 78 1e-13
emb|CAC12094.1| (AL445066) NADH dehydrogenase, chain ndhI [Therm... 78 1e-13
gi|11466442 subunit I of NADH-plastoquinoneoxidoreductase [Mesos... 77 2e-13
gi|7525089 NADH dehydrogenase subunit [Arabidopsis thaliana] >gi... 76 3e-13
gi|11466851 18kDa protein related to a subunit of NADH dehydrogh... 76 3e-13
sp|P80269|NUIM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUN... 76 3e-13
pir||S52385 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain T... 76 3e-13
gi|11467259 NADH dehydrogenase subunit [Zea mays] >gi|1171861|sp... 76 3e-13
emb|CAA09813.1| (AJ011848) ndhI protein [Hordeum vulgare] 76 4e-13
emb|CAB67224.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 75 6e-13
sp|Q9ZCF8|NUOI_RICPR NADH DEHYDROGENASE I CHAIN I (NADH-UBIQUINO... 75 8e-13
pir||C82822 NADH-ubiquinone oxidoreductase, NQO9 subunit XF0313 ... 75 8e-13
sp|P05312|NUIC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I... 75 1e-12
pir||B72620 probable NADH-plastoquinone oxidoreductase subunit I... 75 1e-12
gi|11466585 NADH dehydrogenase subunit 8 [Rhodomonas salina] >gi... 73 3e-12
sp|Q42599|NUIM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUN... 73 4e-12
gb|AAG10813.1|AC011808_1 (AC011808) Putative NADH-ubiquinone ox... 73 4e-12
gb|AAF55234.1| (AE003710) CG3944 gene product [Drosophila melano... 72 5e-12
gi|11525681 NADH dehydrogenase (ubiquinone) Fe-S protein 8 (23kD... 72 7e-12
gi|4505371 NADH dehydrogenase (ubiquinone) Fe-S protein 8 (23kD)... 72 7e-12
emb|CAC14151.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 72 7e-12
sp|P42028|NUIM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 23 KD SUBUNI... 71 9e-12
pir||C71018 probable NADH-plastoquinone oxidoreductase subunit -... 71 1e-11
gi|11466496 NADH dehydrogenase, subunit 8 [Reclinomonas american... 71 1e-11
sp|O24143|NUIM_TOBAC NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUN... 70 2e-11
sp|Q56224|NQO9_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 9 (NAD... 70 3e-11
pir||T34616 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain n... 69 3e-11
pir||H75114 co-induced hydrogenase related, chain X PAB1894 - Py... 69 6e-11
pir||D75390 NADH dehydrogenase I, I subunit - Deinococcus radiod... 69 6e-11
>pir||D75114 NADH dehydrogenase I, chain I PAB0496 - Pyrococcus abyssi (strain
Orsay) >gi|5458140|emb|CAB49629.1| (AJ248285) NADH
dehydrogenase I, SUBUNIT I [Pyrococcus abyssi]
Length = 214
Score = 467 bits (1190), Expect = e-131
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKK 60
MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKK
Sbjct: 1 MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKK 60
Query: 61 CIGCNFCGQICPARAIEMTWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES 120
CIGCNFCGQICPARAIEMTWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES
Sbjct: 61 CIGCNFCGQICPARAIEMTWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES 120
Query: 121 YILTTTGDEEELQLFDWVPLPPDKFRELQEEYKDWRFPVEKIDFNEETKEVTYYLRNGEI 180
YILTTTGDEEELQLFDWVPLPPDKFRELQEEYKDWRFPVEKIDFNEETKEVTYYLRNGEI
Sbjct: 121 YILTTTGDEEELQLFDWVPLPPDKFRELQEEYKDWRFPVEKIDFNEETKEVTYYLRNGEI 180
Query: 181 FKFKILGYGLRPPKPPAKPKTQPKKEESQNQSKS 214
FKFKILGYGLRPPKPPAKPKTQPKKEESQNQSKS
Sbjct: 181 FKFKILGYGLRPPKPPAKPKTQPKKEESQNQSKS 214
>pir||A71019 probable NADH-plastoquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257870|dbj|BAA30553.1| (AP000006) 206aa
long hypothetical NADH-plastoquinone oxidoreductase
subunit [Pyrococcus horikoshii]
Length = 206
Score = 415 bits (1055), Expect = e-115
Identities = 187/206 (90%), Positives = 200/206 (96%), Gaps = 1/206 (0%)
Query: 1 MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKK 60
MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIP EKI+PAPKYRGFHTLDWKK
Sbjct: 1 MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIPDEKIEPAPKYRGFHTLDWKK 60
Query: 61 CIGCNFCGQICPARAIEMTWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES 120
CIGCNFCGQICPARAIEMTWIEV+GK+EKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES
Sbjct: 61 CIGCNFCGQICPARAIEMTWIEVNGKLEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES 120
Query: 121 YILTTTGDEEELQLFDWVPLPPDKFRELQEEYKDWRFPVEKIDFNEETKEVTYYLRNGEI 180
YILTTTG EEELQLFDWVPLPPDKF+ELQ+EY DWRFP+E+I+FN+ETKEVTYYLRNGE
Sbjct: 121 YILTTTGKEEELQLFDWVPLPPDKFKELQDEYGDWRFPIERIEFNKETKEVTYYLRNGET 180
Query: 181 FKFKILGYGLRPPKPPAKPKTQPKKE 206
FKFKI+GYGL+PPKPP+KP+ Q KKE
Sbjct: 181 FKFKIVGYGLKPPKPPSKPQ-QEKKE 205
>pir||G72281 glutamate synthase, beta subunit - Thermotoga maritima (strain
MSB8) >gi|4981770|gb|AAD36292.1|AE001778_13 (AE001778)
glutamate synthase, beta subunit [Thermotoga maritima]
Length = 618
Score = 111 bits (274), Expect = 9e-24
Identities = 59/138 (42%), Positives = 81/138 (57%), Gaps = 15/138 (10%)
Query: 14 VKKQPS--FVKPWLGLKYLFKKPVTIKIPYE-KIDPAPKYRGFHTLDWKKCIGCNFCGQI 70
V+K P F P K+L +KPVTI++P + + + + +YRGFH DW KCIGC C +I
Sbjct: 6 VQKLPEKDFFAPLKAWKFLVRKPVTIEVPNKIRREASERYRGFHVNDWGKCIGCGTCAKI 65
Query: 71 CPARAIEMTWI----EVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTT 126
CP AI M + + DGK+ +R P IDYGRC+FC CVD+C TG+L YI +
Sbjct: 66 CPTDAITMVEVPDLTQEDGKLPQR--PVIDYGRCSFCALCVDICTTGSLKMTREYIHISE 123
Query: 127 GDEEELQLFDWVPLPPDK 144
E D++ +P DK
Sbjct: 124 DPE------DFIFMPTDK 135
>emb|CAB44669.1| (AJ242867) NDH-I protein [Anabaena PCC7120]
Length = 194
Score = 84.3 bits (205), Expect = 1e-15
Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 29 YLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDGKM 87
++ ++PVT++ PYEK+ P ++RG ++ KCI C C ++CP + W + K
Sbjct: 32 HMRRRPVTVQYPYEKLIPGERFRGRIHYEFDKCIACEVCVRVCPINLPVVDWEFDKATKK 91
Query: 88 EKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPL 140
+K H ID+G C FC CV+ CPT L E Y L T D EL +D V L
Sbjct: 92 KKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATY-DRHELN-YDSVAL 142
>gi|11500028 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
kD subunit (chain I) [Archaeoglobus fulgidus]
Length = 148
Score = 82.7 bits (201), Expect = 3e-15
Identities = 38/81 (46%), Positives = 49/81 (59%), Gaps = 7/81 (8%)
Query: 35 VTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEVDGKMEKRPHPK 94
+T++ P E+ +RGF D +KCI C C QICPA AI+M + + R +P
Sbjct: 35 ITVEYPRERRRYPECFRGFIVFDREKCISCFRCAQICPANAIQMEYFD-------RAYPG 87
Query: 95 IDYGRCTFCQFCVDVCPTGAL 115
IDY +C FC FCVD CPTGAL
Sbjct: 88 IDYAKCIFCHFCVDSCPTGAL 108
>sp|Q00236|NUIC_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|541327|pir||JQ2136 ferredoxin 2[4Fe-4S] B -
Plectonema boryanum >gi|216819|dbj|BAA00815.1| (D01014)
NADH-ubiquinone oxidoreductase 23 kDa subunit homolog
[Plectonema boryanum]
Length = 194
Score = 81.5 bits (198), Expect = 8e-15
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 29 YLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDGKM 87
++ ++P+T++ PYEK+ + ++RG ++ KCI C C ++CP + W + K
Sbjct: 32 HMRRRPITVQYPYEKLILSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKETKK 91
Query: 88 EKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
+K H ID+G C FC CV+ CPT L E Y L+T D EL
Sbjct: 92 KKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTY-DRHEL 135
>sp|P26525|NUIC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|65736|pir||FEYBQI NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain ndhI - Synechocystis sp. (strain PCC
6803) >gi|47556|emb|CAA44375.1| (X62517) NDHI
[Synechocystis sp.] >gi|1001394|dbj|BAA10884.1| (D64006)
NADH dehydrogenase subunit NdhI [Synechocystis sp.]
Length = 193
Score = 80.4 bits (195), Expect = 2e-14
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 29 YLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEVDGKME 88
++ ++P+T++ PYEK+ P+ ++RG ++ KCI C C ++CP + W E + ++
Sbjct: 33 HMSRRPITVQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDW-EFNKAVK 91
Query: 89 KR--PHPKIDYGRCTFCQFCVDVCPTGALGFIESYIL 123
K+ H ID+G C FC CV+ CPT L E Y L
Sbjct: 92 KKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYEL 128
>gi|11466019 NADH dehydrogenase 18kD subunit [Nicotiana tabacum]
>gi|120539|sp|P06252|NUIC_TOBAC NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|65733|pir||FENTB ferredoxin 2[4Fe-4S] frxB - common
tobacco chloroplast >gi|100289|pir||S11956 iron-sulfur
protein frxB - tobacco chloroplast
>gi|1223671|emb|CAA77397.1| (Z00044) NADH dehydrogenase
18kD subunit [Nicotiana tabacum]
>gi|225259|prf||1211235CU ORF 167 [Nicotiana tabacum]
Length = 167
Score = 80.0 bits (194), Expect = 2e-14
Identities = 40/107 (37%), Positives = 60/107 (55%), Gaps = 2/107 (1%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
L + + PVTI+ PYEK+ + ++RG ++ KCI C C ++CP + W +E D
Sbjct: 30 LSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89
Query: 86 KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
+ ++ + ID+G C FC CV+ CPT L E Y L+T D EL
Sbjct: 90 RKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTY-DRHEL 135
>gi|11466756 frxB [Marchantia polymorpha] >gi|120536|sp|P06253|NUIC_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB
PROTEIN) >gi|65734|pir||FELVB ferredoxin 2[4Fe-4S] frxB
- liverwort (Marchantia polymorpha) chloroplast
>gi|11727|emb|CAA28138.1| (X04465) frxB [Marchantia
polymorpha]
Length = 183
Score = 79.6 bits (193), Expect = 3e-14
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
L ++ + P TI+ PYEK+ P+ ++RG ++ KCI C C ++CP + W ++
Sbjct: 30 LDHMNRLPTTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWELKKTI 89
Query: 86 KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEE 130
K ++ + ID+G C FC CV+ CPT L E Y L+T E
Sbjct: 90 KKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYNRHE 134
>gi|11467871 subunit I of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880800|gb|AAD54893.1|AF137379_116
(AF137379) subunit I of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 173
Score = 79.6 bits (193), Expect = 3e-14
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 29 YLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDGKM 87
++ ++P+TI PYEK+ P+ ++RG ++ KCI C C ++CP + W + K
Sbjct: 32 HMSRRPITIHYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWDYQKSVKK 91
Query: 88 EKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPL 140
++ ID+G C FC CV+ CPT L E Y L+ D EL FD V L
Sbjct: 92 KQLRSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVY-DRHELN-FDHVAL 142
>gi|11497585 NADH dehydrogenase 18kD subunit [Spinacia oleracea]
>gi|7636166|emb|CAB88788.1| (AJ400848) NADH
dehydrogenase 18kD subunit [Spinacia oleracea]
Length = 170
Score = 78.4 bits (190), Expect = 7e-14
Identities = 40/107 (37%), Positives = 59/107 (54%), Gaps = 2/107 (1%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
L + + PVTI+ PYEK+ + ++RG ++ KCI C C + CP + W +E D
Sbjct: 30 LSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRACPIDLPVVDWKLETDI 89
Query: 86 KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
+ ++ + ID+G C FC CV+ CPT L E Y L+T D EL
Sbjct: 90 RKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTY-DRHEL 135
>gb|AAK40661.1| NADH dehydrogenase subunit I (NuoI) [Sulfolobus solfataricus]
Length = 188
Score = 77.6 bits (188), Expect = 1e-13
Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 26 GLKYLFK-KPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEVD 84
G+KY K + +T++ P + + YRG L CIGC C ICPA A++M +
Sbjct: 47 GIKYFVKPQRITLQYPEDSLTLPTGYRGMIRLYKDVCIGCTLCALICPADAMKM--VTES 104
Query: 85 GKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPLPPDK 144
GK P+I+YGRC FC FCVDVCP AL E+ + + + +FD PD+
Sbjct: 105 GKK----FPQINYGRCVFCGFCVDVCPVDALK--ETKVHDLVFNNRKQLIFD-----PDR 153
Query: 145 FRELQEEYKDWRFPVEKI 162
F ++ PV K+
Sbjct: 154 FNVDIDDVPMQDKPVRKV 171
>gb|AAF65736.1|AF228525_6 (AF228525) F420H2 dehydrogenase subunit FpoI [Methanosarcina mazei]
Length = 136
Score = 77.6 bits (188), Expect = 1e-13
Identities = 39/96 (40%), Positives = 52/96 (53%), Gaps = 1/96 (1%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEV-DG 85
LK + K+ VT P + + ++RG TLD KCIGC C CP AI++ + G
Sbjct: 10 LKNIPKERVTRLCPEVESPLSERFRGLQTLDKSKCIGCGICANTCPNSAIKIVKAPIAPG 69
Query: 86 KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESY 121
+KR P+ID G C FC C+D CP GAL + Y
Sbjct: 70 SEKKRWFPQIDIGHCLFCGLCIDQCPKGALSSGKEY 105
>emb|CAC12094.1| (AL445066) NADH dehydrogenase, chain ndhI [Thermoplasma
acidophilum]
Length = 154
Score = 77.6 bits (188), Expect = 1e-13
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 28 KYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEVDGKM 87
K+LFKKP+T++ P EK +++ L C+GC C Q+CP +I M +E +
Sbjct: 35 KHLFKKPITVQYPEEKAYTPARFKFRIFLSMDDCVGCTLCEQVCPNLSIRMIVVERNNPH 94
Query: 88 EKRP-HPKIDYGRCTFCQFCVDVCPTGAL 115
KR +P++++G CT C+ C ++CPT A+
Sbjct: 95 NKRNLYPQVNFGTCTVCRNCEEICPTEAI 123
>gi|11466442 subunit I of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259585|gb|AAF43886.1|AF166114_98 (AF166114) subunit
I of NADH-plastoquinoneoxidoreductase [Mesostigma
viride]
Length = 176
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/105 (34%), Positives = 58/105 (54%), Gaps = 2/105 (1%)
Query: 29 YLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDGKM 87
++ ++ +TI+ PYEK+ P+ ++RG ++ KCI C C ++CP + W + + K
Sbjct: 32 HMNRRAITIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVNWEFQKEKKK 91
Query: 88 EKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
++ ID+G C FC CV+ CPT L E Y L+ D EL
Sbjct: 92 KQLQTYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVY-DRHEL 135
>gi|7525089 NADH dehydrogenase subunit [Arabidopsis thaliana]
>gi|6685681|sp|P56755|NUIC_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT I >gi|5881750|dbj|BAA84441.1|
(AP000423) NADH dehydrogenase subunit [Arabidopsis
thaliana]
Length = 172
Score = 76.5 bits (185), Expect = 3e-13
Identities = 38/107 (35%), Positives = 59/107 (54%), Gaps = 2/107 (1%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
L + + PVTI+ PYEK+ + ++RG ++ KCI C C ++CP + W +E +
Sbjct: 30 LSHTNRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETNI 89
Query: 86 KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
+ ++ + ID+G C FC CV+ CPT L E Y +T D EL
Sbjct: 90 RKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTY-DRHEL 135
>gi|11466851 18kDa protein related to a subunit of NADH dehydroghenase [Oryza
sativa] >gi|120537|sp|P12099|NUIC_ORYSA
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB
PROTEIN) >gi|65735|pir||FERZB ferredoxin 2[4Fe-4S] frxB
- rice chloroplast >gi|12054|emb|CAA33909.1| (X15901)
18kDa protein related to a subunit of NADH
dehydroghenase [Oryza sativa] >gi|226675|prf||1603356DC
NADH dehydrogenase-like 18kD protein [Oryza sativa]
Length = 178
Score = 76.1 bits (184), Expect = 3e-13
Identities = 40/107 (37%), Positives = 57/107 (52%), Gaps = 2/107 (1%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
L + + P+TI PYEK + ++RG ++ KCI C C ++CP + W E D
Sbjct: 28 LSHTNRLPITIHYPYEKSITSERFRGRIHFEFDKCIACEVCVRVCPIDLPLVDWRFEKDI 87
Query: 86 KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
K ++ + ID+G C FC CV+ CPT L E Y L+T D EL
Sbjct: 88 KRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTY-DRHEL 133
>sp|P80269|NUIM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUNIT PRECURSOR (COMPLEX
I-23KD) (CI-23KD) (COMPLEX I-28.5KD) (CI-28.5KD)
>gi|1076670|pir||S52386 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain TYKY.1 precursor - potato
>gi|668985|emb|CAA59062.1| (X84319) NADH dehydrogenase
[Solanum tuberosum]
Length = 229
Score = 76.1 bits (184), Expect = 3e-13
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 25 LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMT 79
L LKY F+K VTI P+EK +P++RG H L ++CI C C ICPA+AI +
Sbjct: 89 LTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYATGEERCIACKLCEAICPAQAITIE 148
Query: 80 WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
E + + ID +C +C FC + CP A+ ++ T EE L
Sbjct: 149 AEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 201
>pir||S52385 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain TYKY.2 precursor
- potato >gi|668987|emb|CAA59063.1| (X84320) NADH
dehydrogenase [Solanum tuberosum]
Length = 229
Score = 76.1 bits (184), Expect = 3e-13
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 25 LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDW-----KKCIGCNFCGQICPARAIEMT 79
L LKY F+K VTI P+EK +P++RG H L ++CI C C ICPA+AI +
Sbjct: 89 LTLKYFFEKKVTINYPFEKGPLSPRFRGEHALHRYATGEERCIACKLCEAICPAQAITIE 148
Query: 80 WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
E + + ID +C +C FC + CP A+ ++ T EE L
Sbjct: 149 AEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 201
>gi|11467259 NADH dehydrogenase subunit [Zea mays]
>gi|1171861|sp|P46722|NUIC_MAIZE NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|1363565|pir||S58619 ferredoxin 2[4Fe-4S] ndhI -
maize chloroplast >gi|902288|emb|CAA60352.1| (X86563)
NADH dehydrogenase subunit [Zea mays]
Length = 180
Score = 76.1 bits (184), Expect = 3e-13
Identities = 40/107 (37%), Positives = 57/107 (52%), Gaps = 2/107 (1%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
L + + P+TI PYEK + ++RG ++ KCI C C ++CP + W E D
Sbjct: 30 LSHTNRLPITIHYPYEKSITSERFRGRIHFEFDKCIACEVCVRVCPIDLPLVDWRFEKDI 89
Query: 86 KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
K ++ + ID+G C FC CV+ CPT L E Y L+T D EL
Sbjct: 90 KRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTY-DRHEL 135
>emb|CAA09813.1| (AJ011848) ndhI protein [Hordeum vulgare]
Length = 180
Score = 75.7 bits (183), Expect = 4e-13
Identities = 40/107 (37%), Positives = 56/107 (51%), Gaps = 2/107 (1%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
L + + P+TI PYEK ++RG ++ KCI C C ++CP + W E D
Sbjct: 30 LSHTNRLPITIHYPYEKSITPERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWRFEKDI 89
Query: 86 KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
K ++ + ID+G C FC CV+ CPT L E Y L+T D EL
Sbjct: 90 KRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTY-DRHEL 135
>emb|CAB67224.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit I [Oenothera
elata subsp. hookeri]
Length = 165
Score = 75.3 bits (182), Expect = 6e-13
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
L + + PVTI+ PYEK+ + ++RG ++ KCI C C ++CP + W +E
Sbjct: 30 LSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETGV 89
Query: 86 KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILT 124
+ ++ + ID+G C FC CV+ CPT L E Y L+
Sbjct: 90 RKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS 128
>sp|Q9ZCF8|NUOI_RICPR NADH DEHYDROGENASE I CHAIN I (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
I) >gi|7430802|pir||E71640 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain I RP795 - Rickettsia
prowazekii >gi|3861322|emb|CAA15221.1| (AJ235273) NADH
DEHYDROGENASE I CHAIN I (nuoI) [Rickettsia prowazekii]
Length = 159
Score = 74.9 bits (181), Expect = 8e-13
Identities = 37/96 (38%), Positives = 50/96 (51%), Gaps = 5/96 (5%)
Query: 25 LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMT 79
L LKY FK VTI PYEK +P+++G H L ++CI C C ICPA+AI +
Sbjct: 19 LTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERCIACKLCEAICPAQAIVIE 78
Query: 80 WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGAL 115
E D + ID +C +C C + CP A+
Sbjct: 79 SDERDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114
>pir||C82822 NADH-ubiquinone oxidoreductase, NQO9 subunit XF0313 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105136|gb|AAF83124.1|AE003884_9 (AE003884)
NADH-ubiquinone oxidoreductase, NQO9 subunit [Xylella
fastidiosa]
Length = 163
Score = 74.9 bits (181), Expect = 8e-13
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 24 WLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM 78
WL LKY F+ T+ P EK +P++RG H L ++CI C C +CPA AI +
Sbjct: 22 WLTLKYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITI 81
Query: 79 TWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYIL 123
+ + + ID +C FC FC + CP ++ +E++IL
Sbjct: 82 DSAKREDGTRRTTRYDIDLFKCIFCGFCEESCPVDSI--VETHIL 124
>sp|P05312|NUIC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|82627|pir||S00636 iron-sulfur protein frxB - wheat
chloroplast >gi|12342|emb|CAA29900.1| (X06720) frxB gene
product (AA 1-176) [Triticum aestivum]
Length = 176
Score = 74.5 bits (180), Expect = 1e-12
Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
L + + P+TI PYEK ++RG ++ KCI C C +CP + W E D
Sbjct: 32 LSHTNRLPITIHYPYEKSITPERFRGRIHFEFDKCIACEVCVGVCPIDLPVVDWRFEKDI 91
Query: 86 KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
K ++ + ID+G C FC CV+ CPT L E Y L+T D EL
Sbjct: 92 KKKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTY-DRHEL 137
>pir||B72620 probable NADH-plastoquinone oxidoreductase subunit I APE1419 -
Aeropyrum pernix (strain K1) >gi|5105102|dbj|BAA80416.1|
(AP000061) 198aa long hypothetical NADH-plastoquinone
oxidoreductase subunit I [Aeropyrum pernix]
Length = 198
Score = 74.5 bits (180), Expect = 1e-12
Identities = 42/98 (42%), Positives = 54/98 (54%), Gaps = 8/98 (8%)
Query: 25 LGLKYLFKKPVTIKIPYEKIDPAPK--YRGFHTLDWKKCIGCNFCGQICPARAIEMTWIE 82
+GLKY F P I Y K P + YRGF L+ KCI C C +ICP+ A++M +
Sbjct: 41 IGLKY-FVNPRRFSIYYPKEYPELRQGYRGFIILNKAKCISCAACARICPSAAMKMIRVP 99
Query: 83 VDGKMEK-----RPHPKIDYGRCTFCQFCVDVCPTGAL 115
V E + P I+Y RC FC +CVD+CPT AL
Sbjct: 100 VPHPKEPEKKVTKQFPVINYQRCIFCGYCVDICPTEAL 137
>gi|11466585 NADH dehydrogenase subunit 8 [Rhodomonas salina]
>gi|10444172|gb|AAG17746.1|AF288090_22 (AF288090) NADH
dehydrogenase subunit 8 [Rhodomonas salina]
Length = 162
Score = 73.0 bits (176), Expect = 3e-12
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 24 WLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM 78
W+ L+Y F++ VT+ P+EK +P++RG H L ++CI C C +CPA+AI +
Sbjct: 21 WMVLQYFFRRKVTLNYPFEKAVLSPRFRGEHALRRYFSGEERCIACKLCEAVCPAQAITI 80
Query: 79 TWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGAL 115
K ID +C FC C + CP A+
Sbjct: 81 ETESRADNSRKTSRYDIDMTKCIFCGLCQEACPVDAI 117
>sp|Q42599|NUIM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUNIT PRECURSOR (COMPLEX
I-23KD) (CI-23KD) (COMPLEX I-28.5KD) (CI-28.5KD)
>gi|1076356|pir||S52380 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain TYKY precursor - Arabidopsis thaliana
>gi|666977|emb|CAA59061.1| (X84318) NADH dehydrogenase
[Arabidopsis thaliana] >gi|3152573|gb|AAC17054.1|
(AC002986) Match to NADH:ubiquinone oxidoreductase
gb|X84318 from A.thaliana. ESTs gb|Z27005, gb|T04711,
gb|T45078 and gb|Z28689 come from this gene.
[Arabidopsis thaliana]
Length = 222
Score = 72.6 bits (175), Expect = 4e-12
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 25 LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMT 79
L LKY F VTI P+EK +P++RG H L ++CI C C +CPA+AI +
Sbjct: 82 LTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIE 141
Query: 80 WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
E + + ID +C +C FC + CP A+ ++ T EE L
Sbjct: 142 AEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 194
>gb|AAG10813.1|AC011808_1 (AC011808) Putative NADH-ubiquinone oxidoreductase [Arabidopsis
thaliana]
Length = 222
Score = 72.6 bits (175), Expect = 4e-12
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 25 LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMT 79
L LKY F VTI P+EK +P++RG H L ++CI C C +CPA+AI +
Sbjct: 82 LTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIE 141
Query: 80 WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
E + + ID +C +C FC + CP A+ ++ T EE L
Sbjct: 142 AEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 194
>gb|AAF55234.1| (AE003710) CG3944 gene product [Drosophila melanogaster]
Length = 217
Score = 72.2 bits (174), Expect = 5e-12
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMTWI 81
L ++FK+P TI P+EK +P++RG H L ++CI C C ICPA+AI +
Sbjct: 79 LAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 138
Query: 82 EVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
E + ID +C +C FC + CP A+ ++ +T EE L
Sbjct: 139 ERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELL 189
>gi|11525681 NADH dehydrogenase (ubiquinone) Fe-S protein 8 (23kD)
(NADH-coenzyme Q reductase) [Homo sapiens]
Length = 210
Score = 71.8 bits (173), Expect = 7e-12
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMTWI 81
L YLF++P TI P+EK +P++RG H L ++CI C C ICPA+AI +
Sbjct: 72 LSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 131
Query: 82 EVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
+ ID +C +C FC + CP A+ ++ +T EE L
Sbjct: 132 PRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELL 182
>gi|4505371 NADH dehydrogenase (ubiquinone) Fe-S protein 8 (23kD)
(NADH-coenzyme Q reductase); NADH dehydrogenase
(ubiquinone) Fe-S protein 8 (23kD) (NADH-coenzyme Q
[Homo sapiens] >gi|2499325|sp|O00217|NUIM_HUMAN
NADH-UBIQUINONE OXIDOREDUCTASE 23 KD SUBUNIT PRECURSOR
(COMPLEX I-23KD) (CI-23KD) (TYKY SUBUNIT)
>gi|1935056|gb|AAB51776.1| (U65579) mitochondrial NADH
dehydrogenase-ubiquinone Fe-S protein 8, 23 kDa subunit
precursor [Homo sapiens] >gi|3523123|gb|AAC34273.1|
(AF038406) NADH dehydrogenase-ubiquinone Fe-S protein 8
23 kDa subunit; mitochondrial complex I TYKY subunit
[Homo sapiens]
Length = 210
Score = 71.8 bits (173), Expect = 7e-12
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMTWI 81
L YLF++P TI P+EK +P++RG H L ++CI C C ICPA+AI +
Sbjct: 72 LSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 131
Query: 82 EVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
+ ID +C +C FC + CP A+ ++ +T EE L
Sbjct: 132 PRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELL 182
>emb|CAC14151.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 210
Score = 71.8 bits (173), Expect = 7e-12
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 29 YLFKKPVTIKIP-YEKIDPAPKYRGFHTLDWK-----KCIGCNFCGQICPARAIEMTWIE 82
Y+F +PVT++ P EK P +YRG H L KC+ C C +ICP IE+ E
Sbjct: 52 YMFSRPVTMQYPDKEKWLPYSRYRGHHFLKRDDEGEIKCVACELCARICPCDCIEVVPYE 111
Query: 83 VDGKMEKRPHP-KIDYGRCTFCQFCVDVCPTGALGFIESY 121
D K +RP +ID RC FC C D CP A+ + Y
Sbjct: 112 -DEKGNRRPAKFEIDTARCLFCGLCEDACPADAIALGQQY 150
>sp|P42028|NUIM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 23 KD SUBUNIT PRECURSOR (COMPLEX
I-23KD) (CI-23KD) (TYKY SUBUNIT) >gi|108808|pir||A38409
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) 23K chain
precursor - bovine >gi|163418|gb|AAA30664.1| (M58717)
NADH dehydrogenase (ubiquinone) [Bos taurus]
Length = 212
Score = 71.4 bits (172), Expect = 9e-12
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMTWI 81
L YLF++P TI P+EK +P++RG H L ++CI C C +CPA+AI +
Sbjct: 74 LSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAE 133
Query: 82 EVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
+ ID +C +C FC + CP A+ ++ +T EE L
Sbjct: 134 PRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELL 184
>pir||C71018 probable NADH-plastoquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257864|dbj|BAA30547.1| (AP000006) 136aa
long hypothetical NADH-plastoquinone oxidoreductase
subunit [Pyrococcus horikoshii]
Length = 136
Score = 71.0 bits (171), Expect = 1e-11
Identities = 44/130 (33%), Positives = 66/130 (49%), Gaps = 14/130 (10%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAP---KYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEV 83
+K LFK P T P+ K +P P +RG + KC+GC C +CPA +I
Sbjct: 11 IKNLFKSPATN--PFPKTEPIPVPDNFRGRIVYNVDKCVGCRMCVTVCPAGVF--VYIPE 66
Query: 84 DGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPLPPD 143
K+ + GRC FC+ CVDVCPTGAL + ++L + +E ++ P +
Sbjct: 67 IRKVA------LWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIY-VTPQDVE 119
Query: 144 KFRELQEEYK 153
+ ++ QEE K
Sbjct: 120 EIKKKQEEIK 129
>gi|11466496 NADH dehydrogenase, subunit 8 [Reclinomonas americana]
>gi|6225784|sp|O21233|NUIM_RECAM NADH-UBIQUINONE
OXIDOREDUCTASE SUBUNIT 8 >gi|7430803|pir||S78127 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 8 -
Reclinomonas americana (ATCC 50394) mitochondrion
>gi|2258326|gb|AAD11860.1| (AF007261) NADH
dehydrogenase, subunit 8 [Reclinomonas americana]
Length = 162
Score = 70.6 bits (170), Expect = 1e-11
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 25 LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM- 78
L L Y F+K VT+ P+EK +P++RG H L ++CI C C ICPA+AI +
Sbjct: 22 LTLDYFFRKKVTLNYPFEKGPLSPRFRGEHALRRYQTGEERCIACKLCEAICPAQAITIE 81
Query: 79 TWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
+ +DG + ID +C +C FC + CP A+ ++ T EE L
Sbjct: 82 SEPRIDGS-RRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 134
>sp|O24143|NUIM_TOBAC NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUNIT PRECURSOR (COMPLEX
I-23KD) (CI-23KD) (COMPLEX I-28.5KD) (CI-28.5KD)
>gi|1666177|emb|CAA70326.1| (Y09109) NADH dehydrogenase
[Nicotiana tabacum]
Length = 230
Score = 70.2 bits (169), Expect = 2e-11
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 25 LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMT 79
L LKY F+K VTI P+EK +P++RG L ++CI C C ICPA+AI +
Sbjct: 90 LTLKYFFEKKVTINYPFEKGPLSPRFRGEQPLRRYPTGEERCIACKLCEAICPAQAITIE 149
Query: 80 WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
+ + ID +C +C FC + CP A+ ++ T EE L
Sbjct: 150 AEAREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 202
>sp|Q56224|NQO9_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 9 (NADH DEHYDROGENASE 1, CHAIN
9) (NDH-1, CHAIN 9) >gi|7451621|pir||T11906 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO9 -
Thermus aquaticus thermophilus
>gi|1279869|gb|AAA97946.1| (U52917) NADH dehydrogenase
I, subunit NQO9 [Thermus thermophilus]
Length = 182
Score = 69.9 bits (168), Expect = 3e-11
Identities = 39/101 (38%), Positives = 53/101 (51%), Gaps = 13/101 (12%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMTWI 81
LKYLF KPVT+ P + P++ G H L +KCIGC+ C CPA AI +
Sbjct: 14 LKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPA 73
Query: 82 EVD-------GKMEKRPHPKIDYGRCTFCQFCVDVCPTGAL 115
E D G+ + + +I+ RC FC C + CPTGA+
Sbjct: 74 ENDPENPVSAGERYAKVY-EINMLRCIFCGLCEEACPTGAI 113
>pir||T34616 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nuoI -
Streptomyces coelicolor >gi|5042269|emb|CAB44523.1|
(AL078618) nuoI, NADH dehydrogenase subunit
[Streptomyces coelicolor]
Length = 211
Score = 69.5 bits (167), Expect = 3e-11
Identities = 42/124 (33%), Positives = 61/124 (48%), Gaps = 21/124 (16%)
Query: 18 PSFVKPWLGL----KYLFKKPVTIKIPYEKIDPAPKYRGFHTLD-----WKKCIGCNFCG 68
P F+ P G K +FKK +T + P ++ AP++ G H L+ +KC+GC C
Sbjct: 8 PGFMNPVAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCA 67
Query: 69 QICPARAIEMTWIE-VDGKMEKRPHP--------KIDYGRCTFCQFCVDVCPTGALGFIE 119
CPA AI ++E D E+R P +I+Y RC C C++ CPT AL
Sbjct: 68 WACPADAI---YVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTN 124
Query: 120 SYIL 123
+ L
Sbjct: 125 EFEL 128
>pir||H75114 co-induced hydrogenase related, chain X PAB1894 - Pyrococcus abyssi
(strain Orsay) >gi|5458144|emb|CAB49633.1| (AJ248285)
CO-induced hydrogenase related, subunit X [Pyrococcus
abyssi]
Length = 138
Score = 68.7 bits (165), Expect = 6e-11
Identities = 39/131 (29%), Positives = 67/131 (50%), Gaps = 17/131 (12%)
Query: 27 LKYLFKKPVTIKIPYEKIDPAP---KYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEV 83
+K LFK P T P+ K +P P +RG + KC+GC C +CPA
Sbjct: 11 IKNLFKPPATN--PFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----- 63
Query: 84 DGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPLPPD 143
+ + + GRC FC+ CVDVCPTGAL + ++L + +E ++ + P+
Sbjct: 64 ---LPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDE----KFIYVTPE 116
Query: 144 KFRELQEEYKD 154
+ +E++++ ++
Sbjct: 117 EAQEIKKKLEE 127
>pir||D75390 NADH dehydrogenase I, I subunit - Deinococcus radiodurans (strain
R1) >gi|6459254|gb|AAF11060.1|AE001993_10 (AE001993)
NADH dehydrogenase I, I subunit [Deinococcus
radiodurans]
Length = 178
Score = 68.7 bits (165), Expect = 6e-11
Identities = 36/98 (36%), Positives = 51/98 (51%), Gaps = 12/98 (12%)
Query: 30 LFKKPVTIKIPYEKIDPAPKYRGFHTLD------WKKCIGCNFCGQICPARAIEMTWIEV 83
LF+KP+T+ P ++ P++RG H L +KCIGC+ C CPA AI + E
Sbjct: 17 LFQKPLTVSYPEQRATLQPRFRGRHVLTRHPDTGLEKCIGCSLCAAACPAYAIYVEAAEN 76
Query: 84 DGKMEKRPHPK------IDYGRCTFCQFCVDVCPTGAL 115
D + P + I+ RC FC C + CPTGA+
Sbjct: 77 DPRDPVSPGERYAKVYEINMLRCIFCGLCEEACPTGAV 114
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.142 0.461
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97133944
Number of Sequences: 2977
Number of extensions: 4540173
Number of successful extensions: 15864
Number of sequences better than 1.0e-10: 41
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 15740
Number of HSP's gapped (non-prelim): 46
length of query: 214
length of database: 189,106,746
effective HSP length: 47
effective length of query: 167
effective length of database: 160,977,857
effective search space: 26883302119
effective search space used: 26883302119
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)