BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0496 (nuoI) DE:NADH dehydrogenase I, SUBUNIT I
         (214 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75114 NADH dehydrogenase I, chain I PAB0496 - Pyrococcus a...   467  e-131
pir||A71019 probable NADH-plastoquinone oxidoreductase subunit -...   415  e-115
pir||G72281 glutamate synthase, beta subunit - Thermotoga mariti...   111  9e-24
emb|CAB44669.1| (AJ242867) NDH-I protein [Anabaena PCC7120]            84  1e-15
gi|11500028 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxid...    83  3e-15
sp|Q00236|NUIC_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I...    82  8e-15
sp|P26525|NUIC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I...    80  2e-14
gi|11466019 NADH dehydrogenase 18kD subunit [Nicotiana tabacum] ...    80  2e-14
gi|11466756 frxB [Marchantia polymorpha] >gi|120536|sp|P06253|NU...    80  3e-14
gi|11467871 subunit I of NADH-plastoquinoneoxidoreductase [Nephr...    80  3e-14
gi|11497585 NADH dehydrogenase 18kD subunit [Spinacia oleracea] ...    78  7e-14
gb|AAK40661.1| NADH dehydrogenase subunit I  (NuoI) [Sulfolobus ...    78  1e-13
gb|AAF65736.1|AF228525_6 (AF228525) F420H2 dehydrogenase subunit...    78  1e-13
emb|CAC12094.1| (AL445066) NADH dehydrogenase, chain ndhI [Therm...    78  1e-13
gi|11466442 subunit I of NADH-plastoquinoneoxidoreductase [Mesos...    77  2e-13
gi|7525089 NADH dehydrogenase subunit [Arabidopsis thaliana] >gi...    76  3e-13
gi|11466851 18kDa protein related to a subunit of NADH dehydrogh...    76  3e-13
sp|P80269|NUIM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUN...    76  3e-13
pir||S52385 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain T...    76  3e-13
gi|11467259 NADH dehydrogenase subunit [Zea mays] >gi|1171861|sp...    76  3e-13
emb|CAA09813.1| (AJ011848) ndhI protein [Hordeum vulgare]              76  4e-13
emb|CAB67224.1| (AJ271079) NADH-plastoquinone oxidoreductase sub...    75  6e-13
sp|Q9ZCF8|NUOI_RICPR NADH DEHYDROGENASE I CHAIN I (NADH-UBIQUINO...    75  8e-13
pir||C82822 NADH-ubiquinone oxidoreductase, NQO9 subunit XF0313 ...    75  8e-13
sp|P05312|NUIC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I...    75  1e-12
pir||B72620 probable NADH-plastoquinone oxidoreductase subunit I...    75  1e-12
gi|11466585 NADH dehydrogenase subunit 8 [Rhodomonas salina] >gi...    73  3e-12
sp|Q42599|NUIM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUN...    73  4e-12
gb|AAG10813.1|AC011808_1 (AC011808) Putative  NADH-ubiquinone ox...    73  4e-12
gb|AAF55234.1| (AE003710) CG3944 gene product [Drosophila melano...    72  5e-12
gi|11525681 NADH dehydrogenase (ubiquinone) Fe-S protein 8 (23kD...    72  7e-12
gi|4505371 NADH dehydrogenase (ubiquinone) Fe-S protein 8 (23kD)...    72  7e-12
emb|CAC14151.1| (AJ245399) putative NADH-ubiquinone oxidoreducta...    72  7e-12
sp|P42028|NUIM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 23 KD SUBUNI...    71  9e-12
pir||C71018 probable NADH-plastoquinone oxidoreductase subunit -...    71  1e-11
gi|11466496 NADH dehydrogenase, subunit 8 [Reclinomonas american...    71  1e-11
sp|O24143|NUIM_TOBAC NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUN...    70  2e-11
sp|Q56224|NQO9_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 9 (NAD...    70  3e-11
pir||T34616 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain n...    69  3e-11
pir||H75114 co-induced hydrogenase related, chain X PAB1894 - Py...    69  6e-11
pir||D75390 NADH dehydrogenase I, I subunit - Deinococcus radiod...    69  6e-11

>pir||D75114 NADH dehydrogenase I, chain I PAB0496 - Pyrococcus abyssi  (strain
           Orsay) >gi|5458140|emb|CAB49629.1| (AJ248285) NADH
           dehydrogenase I, SUBUNIT I [Pyrococcus abyssi]
           Length = 214
           
 Score =  467 bits (1190), Expect = e-131
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 1   MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKK 60
           MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKK
Sbjct: 1   MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKK 60

Query: 61  CIGCNFCGQICPARAIEMTWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES 120
           CIGCNFCGQICPARAIEMTWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES
Sbjct: 61  CIGCNFCGQICPARAIEMTWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES 120

Query: 121 YILTTTGDEEELQLFDWVPLPPDKFRELQEEYKDWRFPVEKIDFNEETKEVTYYLRNGEI 180
           YILTTTGDEEELQLFDWVPLPPDKFRELQEEYKDWRFPVEKIDFNEETKEVTYYLRNGEI
Sbjct: 121 YILTTTGDEEELQLFDWVPLPPDKFRELQEEYKDWRFPVEKIDFNEETKEVTYYLRNGEI 180

Query: 181 FKFKILGYGLRPPKPPAKPKTQPKKEESQNQSKS 214
           FKFKILGYGLRPPKPPAKPKTQPKKEESQNQSKS
Sbjct: 181 FKFKILGYGLRPPKPPAKPKTQPKKEESQNQSKS 214


>pir||A71019 probable NADH-plastoquinone oxidoreductase subunit - Pyrococcus
           horikoshii >gi|3257870|dbj|BAA30553.1| (AP000006) 206aa
           long hypothetical NADH-plastoquinone oxidoreductase
           subunit [Pyrococcus horikoshii]
           Length = 206
           
 Score =  415 bits (1055), Expect = e-115
 Identities = 187/206 (90%), Positives = 200/206 (96%), Gaps = 1/206 (0%)

Query: 1   MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKK 60
           MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIP EKI+PAPKYRGFHTLDWKK
Sbjct: 1   MMLMPAKVVGEDKVKKQPSFVKPWLGLKYLFKKPVTIKIPDEKIEPAPKYRGFHTLDWKK 60

Query: 61  CIGCNFCGQICPARAIEMTWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES 120
           CIGCNFCGQICPARAIEMTWIEV+GK+EKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES
Sbjct: 61  CIGCNFCGQICPARAIEMTWIEVNGKLEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIES 120

Query: 121 YILTTTGDEEELQLFDWVPLPPDKFRELQEEYKDWRFPVEKIDFNEETKEVTYYLRNGEI 180
           YILTTTG EEELQLFDWVPLPPDKF+ELQ+EY DWRFP+E+I+FN+ETKEVTYYLRNGE 
Sbjct: 121 YILTTTGKEEELQLFDWVPLPPDKFKELQDEYGDWRFPIERIEFNKETKEVTYYLRNGET 180

Query: 181 FKFKILGYGLRPPKPPAKPKTQPKKE 206
           FKFKI+GYGL+PPKPP+KP+ Q KKE
Sbjct: 181 FKFKIVGYGLKPPKPPSKPQ-QEKKE 205


>pir||G72281 glutamate synthase, beta subunit - Thermotoga maritima  (strain
           MSB8) >gi|4981770|gb|AAD36292.1|AE001778_13 (AE001778)
           glutamate synthase, beta subunit [Thermotoga maritima]
           Length = 618
           
 Score =  111 bits (274), Expect = 9e-24
 Identities = 59/138 (42%), Positives = 81/138 (57%), Gaps = 15/138 (10%)

Query: 14  VKKQPS--FVKPWLGLKYLFKKPVTIKIPYE-KIDPAPKYRGFHTLDWKKCIGCNFCGQI 70
           V+K P   F  P    K+L +KPVTI++P + + + + +YRGFH  DW KCIGC  C +I
Sbjct: 6   VQKLPEKDFFAPLKAWKFLVRKPVTIEVPNKIRREASERYRGFHVNDWGKCIGCGTCAKI 65

Query: 71  CPARAIEMTWI----EVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTT 126
           CP  AI M  +    + DGK+ +R  P IDYGRC+FC  CVD+C TG+L     YI  + 
Sbjct: 66  CPTDAITMVEVPDLTQEDGKLPQR--PVIDYGRCSFCALCVDICTTGSLKMTREYIHISE 123

Query: 127 GDEEELQLFDWVPLPPDK 144
             E      D++ +P DK
Sbjct: 124 DPE------DFIFMPTDK 135


>emb|CAB44669.1| (AJ242867) NDH-I protein [Anabaena PCC7120]
           Length = 194
           
 Score = 84.3 bits (205), Expect = 1e-15
 Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 3/113 (2%)

Query: 29  YLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDGKM 87
           ++ ++PVT++ PYEK+ P  ++RG    ++ KCI C  C ++CP     + W  +   K 
Sbjct: 32  HMRRRPVTVQYPYEKLIPGERFRGRIHYEFDKCIACEVCVRVCPINLPVVDWEFDKATKK 91

Query: 88  EKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPL 140
           +K  H  ID+G C FC  CV+ CPT  L   E Y L T  D  EL  +D V L
Sbjct: 92  KKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATY-DRHELN-YDSVAL 142


>gi|11500028 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Archaeoglobus fulgidus]
           Length = 148
           
 Score = 82.7 bits (201), Expect = 3e-15
 Identities = 38/81 (46%), Positives = 49/81 (59%), Gaps = 7/81 (8%)

Query: 35  VTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEVDGKMEKRPHPK 94
           +T++ P E+      +RGF   D +KCI C  C QICPA AI+M + +       R +P 
Sbjct: 35  ITVEYPRERRRYPECFRGFIVFDREKCISCFRCAQICPANAIQMEYFD-------RAYPG 87

Query: 95  IDYGRCTFCQFCVDVCPTGAL 115
           IDY +C FC FCVD CPTGAL
Sbjct: 88  IDYAKCIFCHFCVDSCPTGAL 108


>sp|Q00236|NUIC_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
           >gi|541327|pir||JQ2136 ferredoxin 2[4Fe-4S] B -
           Plectonema boryanum >gi|216819|dbj|BAA00815.1| (D01014)
           NADH-ubiquinone oxidoreductase 23 kDa subunit homolog
           [Plectonema boryanum]
           Length = 194
           
 Score = 81.5 bits (198), Expect = 8e-15
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 29  YLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDGKM 87
           ++ ++P+T++ PYEK+  + ++RG    ++ KCI C  C ++CP     + W    + K 
Sbjct: 32  HMRRRPITVQYPYEKLILSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKETKK 91

Query: 88  EKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
           +K  H  ID+G C FC  CV+ CPT  L   E Y L+T  D  EL
Sbjct: 92  KKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTY-DRHEL 135


>sp|P26525|NUIC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
           >gi|65736|pir||FEYBQI NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain ndhI - Synechocystis sp. (strain PCC
           6803) >gi|47556|emb|CAA44375.1| (X62517) NDHI
           [Synechocystis sp.] >gi|1001394|dbj|BAA10884.1| (D64006)
           NADH dehydrogenase subunit NdhI [Synechocystis sp.]
           Length = 193
           
 Score = 80.4 bits (195), Expect = 2e-14
 Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 3/97 (3%)

Query: 29  YLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEVDGKME 88
           ++ ++P+T++ PYEK+ P+ ++RG    ++ KCI C  C ++CP     + W E +  ++
Sbjct: 33  HMSRRPITVQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDW-EFNKAVK 91

Query: 89  KR--PHPKIDYGRCTFCQFCVDVCPTGALGFIESYIL 123
           K+   H  ID+G C FC  CV+ CPT  L   E Y L
Sbjct: 92  KKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYEL 128


>gi|11466019 NADH dehydrogenase 18kD subunit [Nicotiana tabacum]
           >gi|120539|sp|P06252|NUIC_TOBAC NADH-PLASTOQUINONE
           OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
           >gi|65733|pir||FENTB ferredoxin 2[4Fe-4S] frxB - common
           tobacco chloroplast >gi|100289|pir||S11956 iron-sulfur
           protein frxB - tobacco chloroplast
           >gi|1223671|emb|CAA77397.1| (Z00044) NADH dehydrogenase
           18kD subunit [Nicotiana tabacum]
           >gi|225259|prf||1211235CU ORF 167 [Nicotiana tabacum]
           Length = 167
           
 Score = 80.0 bits (194), Expect = 2e-14
 Identities = 40/107 (37%), Positives = 60/107 (55%), Gaps = 2/107 (1%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
           L +  + PVTI+ PYEK+  + ++RG    ++ KCI C  C ++CP     + W +E D 
Sbjct: 30  LSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89

Query: 86  KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
           + ++  +  ID+G C FC  CV+ CPT  L   E Y L+T  D  EL
Sbjct: 90  RKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTY-DRHEL 135


>gi|11466756 frxB [Marchantia polymorpha] >gi|120536|sp|P06253|NUIC_MARPO
           NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB
           PROTEIN) >gi|65734|pir||FELVB ferredoxin 2[4Fe-4S] frxB
           - liverwort (Marchantia polymorpha) chloroplast
           >gi|11727|emb|CAA28138.1| (X04465) frxB [Marchantia
           polymorpha]
           Length = 183
           
 Score = 79.6 bits (193), Expect = 3e-14
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 1/105 (0%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
           L ++ + P TI+ PYEK+ P+ ++RG    ++ KCI C  C ++CP     + W ++   
Sbjct: 30  LDHMNRLPTTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWELKKTI 89

Query: 86  KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEE 130
           K ++  +  ID+G C FC  CV+ CPT  L   E Y L+T    E
Sbjct: 90  KKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYNRHE 134


>gi|11467871 subunit I of NADH-plastoquinoneoxidoreductase [Nephroselmis
           olivacea] >gi|5880800|gb|AAD54893.1|AF137379_116
           (AF137379) subunit I of NADH-plastoquinoneoxidoreductase
           [Nephroselmis olivacea]
           Length = 173
           
 Score = 79.6 bits (193), Expect = 3e-14
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 29  YLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDGKM 87
           ++ ++P+TI  PYEK+ P+ ++RG    ++ KCI C  C ++CP     + W  +   K 
Sbjct: 32  HMSRRPITIHYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWDYQKSVKK 91

Query: 88  EKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPL 140
           ++     ID+G C FC  CV+ CPT  L   E Y L+   D  EL  FD V L
Sbjct: 92  KQLRSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVY-DRHELN-FDHVAL 142


>gi|11497585 NADH dehydrogenase 18kD subunit [Spinacia oleracea]
           >gi|7636166|emb|CAB88788.1| (AJ400848) NADH
           dehydrogenase 18kD subunit [Spinacia oleracea]
           Length = 170
           
 Score = 78.4 bits (190), Expect = 7e-14
 Identities = 40/107 (37%), Positives = 59/107 (54%), Gaps = 2/107 (1%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
           L +  + PVTI+ PYEK+  + ++RG    ++ KCI C  C + CP     + W +E D 
Sbjct: 30  LSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRACPIDLPVVDWKLETDI 89

Query: 86  KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
           + ++  +  ID+G C FC  CV+ CPT  L   E Y L+T  D  EL
Sbjct: 90  RKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTY-DRHEL 135


>gb|AAK40661.1| NADH dehydrogenase subunit I  (NuoI) [Sulfolobus solfataricus]
           Length = 188
           
 Score = 77.6 bits (188), Expect = 1e-13
 Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 14/138 (10%)

Query: 26  GLKYLFK-KPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEVD 84
           G+KY  K + +T++ P + +     YRG   L    CIGC  C  ICPA A++M  +   
Sbjct: 47  GIKYFVKPQRITLQYPEDSLTLPTGYRGMIRLYKDVCIGCTLCALICPADAMKM--VTES 104

Query: 85  GKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPLPPDK 144
           GK      P+I+YGRC FC FCVDVCP  AL   E+ +     +  +  +FD     PD+
Sbjct: 105 GKK----FPQINYGRCVFCGFCVDVCPVDALK--ETKVHDLVFNNRKQLIFD-----PDR 153

Query: 145 FRELQEEYKDWRFPVEKI 162
           F    ++      PV K+
Sbjct: 154 FNVDIDDVPMQDKPVRKV 171


>gb|AAF65736.1|AF228525_6 (AF228525) F420H2 dehydrogenase subunit FpoI [Methanosarcina mazei]
           Length = 136
           
 Score = 77.6 bits (188), Expect = 1e-13
 Identities = 39/96 (40%), Positives = 52/96 (53%), Gaps = 1/96 (1%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEV-DG 85
           LK + K+ VT   P  +   + ++RG  TLD  KCIGC  C   CP  AI++    +  G
Sbjct: 10  LKNIPKERVTRLCPEVESPLSERFRGLQTLDKSKCIGCGICANTCPNSAIKIVKAPIAPG 69

Query: 86  KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESY 121
             +KR  P+ID G C FC  C+D CP GAL   + Y
Sbjct: 70  SEKKRWFPQIDIGHCLFCGLCIDQCPKGALSSGKEY 105


>emb|CAC12094.1| (AL445066) NADH dehydrogenase, chain ndhI [Thermoplasma
           acidophilum]
           Length = 154
           
 Score = 77.6 bits (188), Expect = 1e-13
 Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 28  KYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEVDGKM 87
           K+LFKKP+T++ P EK     +++    L    C+GC  C Q+CP  +I M  +E +   
Sbjct: 35  KHLFKKPITVQYPEEKAYTPARFKFRIFLSMDDCVGCTLCEQVCPNLSIRMIVVERNNPH 94

Query: 88  EKRP-HPKIDYGRCTFCQFCVDVCPTGAL 115
            KR  +P++++G CT C+ C ++CPT A+
Sbjct: 95  NKRNLYPQVNFGTCTVCRNCEEICPTEAI 123


>gi|11466442 subunit I of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
           >gi|7259585|gb|AAF43886.1|AF166114_98 (AF166114) subunit
           I of NADH-plastoquinoneoxidoreductase [Mesostigma
           viride]
           Length = 176
           
 Score = 76.9 bits (186), Expect = 2e-13
 Identities = 36/105 (34%), Positives = 58/105 (54%), Gaps = 2/105 (1%)

Query: 29  YLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDGKM 87
           ++ ++ +TI+ PYEK+ P+ ++RG    ++ KCI C  C ++CP     + W  + + K 
Sbjct: 32  HMNRRAITIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPINLPVVNWEFQKEKKK 91

Query: 88  EKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
           ++     ID+G C FC  CV+ CPT  L   E Y L+   D  EL
Sbjct: 92  KQLQTYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVY-DRHEL 135


>gi|7525089 NADH dehydrogenase subunit [Arabidopsis thaliana]
           >gi|6685681|sp|P56755|NUIC_ARATH NADH-PLASTOQUINONE
           OXIDOREDUCTASE SUBUNIT I >gi|5881750|dbj|BAA84441.1|
           (AP000423) NADH dehydrogenase subunit [Arabidopsis
           thaliana]
           Length = 172
           
 Score = 76.5 bits (185), Expect = 3e-13
 Identities = 38/107 (35%), Positives = 59/107 (54%), Gaps = 2/107 (1%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
           L +  + PVTI+ PYEK+  + ++RG    ++ KCI C  C ++CP     + W +E + 
Sbjct: 30  LSHTNRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETNI 89

Query: 86  KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
           + ++  +  ID+G C FC  CV+ CPT  L   E Y  +T  D  EL
Sbjct: 90  RKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTY-DRHEL 135


>gi|11466851 18kDa protein related to a subunit of NADH dehydroghenase [Oryza
           sativa] >gi|120537|sp|P12099|NUIC_ORYSA
           NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB
           PROTEIN) >gi|65735|pir||FERZB ferredoxin 2[4Fe-4S] frxB
           - rice chloroplast >gi|12054|emb|CAA33909.1| (X15901)
           18kDa protein related to a subunit of NADH
           dehydroghenase [Oryza sativa] >gi|226675|prf||1603356DC
           NADH dehydrogenase-like 18kD protein [Oryza sativa]
           Length = 178
           
 Score = 76.1 bits (184), Expect = 3e-13
 Identities = 40/107 (37%), Positives = 57/107 (52%), Gaps = 2/107 (1%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
           L +  + P+TI  PYEK   + ++RG    ++ KCI C  C ++CP     + W  E D 
Sbjct: 28  LSHTNRLPITIHYPYEKSITSERFRGRIHFEFDKCIACEVCVRVCPIDLPLVDWRFEKDI 87

Query: 86  KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
           K ++  +  ID+G C FC  CV+ CPT  L   E Y L+T  D  EL
Sbjct: 88  KRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTY-DRHEL 133


>sp|P80269|NUIM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUNIT PRECURSOR (COMPLEX
           I-23KD) (CI-23KD) (COMPLEX I-28.5KD) (CI-28.5KD)
           >gi|1076670|pir||S52386 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain TYKY.1 precursor - potato
           >gi|668985|emb|CAA59062.1| (X84319) NADH dehydrogenase
           [Solanum tuberosum]
           Length = 229
           
 Score = 76.1 bits (184), Expect = 3e-13
 Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 25  LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMT 79
           L LKY F+K VTI  P+EK   +P++RG H L       ++CI C  C  ICPA+AI + 
Sbjct: 89  LTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYATGEERCIACKLCEAICPAQAITIE 148

Query: 80  WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
             E +    +     ID  +C +C FC + CP  A+    ++   T   EE L
Sbjct: 149 AEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 201


>pir||S52385 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain TYKY.2 precursor
           - potato >gi|668987|emb|CAA59063.1| (X84320) NADH
           dehydrogenase [Solanum tuberosum]
           Length = 229
           
 Score = 76.1 bits (184), Expect = 3e-13
 Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 25  LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDW-----KKCIGCNFCGQICPARAIEMT 79
           L LKY F+K VTI  P+EK   +P++RG H L       ++CI C  C  ICPA+AI + 
Sbjct: 89  LTLKYFFEKKVTINYPFEKGPLSPRFRGEHALHRYATGEERCIACKLCEAICPAQAITIE 148

Query: 80  WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
             E +    +     ID  +C +C FC + CP  A+    ++   T   EE L
Sbjct: 149 AEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 201


>gi|11467259 NADH dehydrogenase subunit [Zea mays]
           >gi|1171861|sp|P46722|NUIC_MAIZE NADH-PLASTOQUINONE
           OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
           >gi|1363565|pir||S58619 ferredoxin 2[4Fe-4S] ndhI -
           maize chloroplast >gi|902288|emb|CAA60352.1| (X86563)
           NADH dehydrogenase subunit [Zea mays]
           Length = 180
           
 Score = 76.1 bits (184), Expect = 3e-13
 Identities = 40/107 (37%), Positives = 57/107 (52%), Gaps = 2/107 (1%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
           L +  + P+TI  PYEK   + ++RG    ++ KCI C  C ++CP     + W  E D 
Sbjct: 30  LSHTNRLPITIHYPYEKSITSERFRGRIHFEFDKCIACEVCVRVCPIDLPLVDWRFEKDI 89

Query: 86  KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
           K ++  +  ID+G C FC  CV+ CPT  L   E Y L+T  D  EL
Sbjct: 90  KRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTY-DRHEL 135


>emb|CAA09813.1| (AJ011848) ndhI protein [Hordeum vulgare]
           Length = 180
           
 Score = 75.7 bits (183), Expect = 4e-13
 Identities = 40/107 (37%), Positives = 56/107 (51%), Gaps = 2/107 (1%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
           L +  + P+TI  PYEK     ++RG    ++ KCI C  C ++CP     + W  E D 
Sbjct: 30  LSHTNRLPITIHYPYEKSITPERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWRFEKDI 89

Query: 86  KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
           K ++  +  ID+G C FC  CV+ CPT  L   E Y L+T  D  EL
Sbjct: 90  KRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTY-DRHEL 135


>emb|CAB67224.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit I [Oenothera
           elata subsp. hookeri]
           Length = 165
           
 Score = 75.3 bits (182), Expect = 6e-13
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
           L +  + PVTI+ PYEK+  + ++RG    ++ KCI C  C ++CP     + W +E   
Sbjct: 30  LSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETGV 89

Query: 86  KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILT 124
           + ++  +  ID+G C FC  CV+ CPT  L   E Y L+
Sbjct: 90  RKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS 128


>sp|Q9ZCF8|NUOI_RICPR NADH DEHYDROGENASE I CHAIN I (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           I) >gi|7430802|pir||E71640 NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) I chain I RP795 - Rickettsia
           prowazekii >gi|3861322|emb|CAA15221.1| (AJ235273) NADH
           DEHYDROGENASE I CHAIN I (nuoI) [Rickettsia prowazekii]
           Length = 159
           
 Score = 74.9 bits (181), Expect = 8e-13
 Identities = 37/96 (38%), Positives = 50/96 (51%), Gaps = 5/96 (5%)

Query: 25  LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMT 79
           L LKY FK  VTI  PYEK   +P+++G H L       ++CI C  C  ICPA+AI + 
Sbjct: 19  LTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERCIACKLCEAICPAQAIVIE 78

Query: 80  WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGAL 115
             E D    +     ID  +C +C  C + CP  A+
Sbjct: 79  SDERDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114


>pir||C82822 NADH-ubiquinone oxidoreductase, NQO9 subunit XF0313 [imported] -
           Xylella fastidiosa (strain 9a5c)
           >gi|9105136|gb|AAF83124.1|AE003884_9 (AE003884)
           NADH-ubiquinone oxidoreductase, NQO9 subunit [Xylella
           fastidiosa]
           Length = 163
           
 Score = 74.9 bits (181), Expect = 8e-13
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 7/105 (6%)

Query: 24  WLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM 78
           WL LKY F+   T+  P EK   +P++RG H L       ++CI C  C  +CPA AI +
Sbjct: 22  WLTLKYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITI 81

Query: 79  TWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYIL 123
              + +    +     ID  +C FC FC + CP  ++  +E++IL
Sbjct: 82  DSAKREDGTRRTTRYDIDLFKCIFCGFCEESCPVDSI--VETHIL 124


>sp|P05312|NUIC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
           >gi|82627|pir||S00636 iron-sulfur protein frxB - wheat
           chloroplast >gi|12342|emb|CAA29900.1| (X06720) frxB gene
           product (AA 1-176) [Triticum aestivum]
           Length = 176
           
 Score = 74.5 bits (180), Expect = 1e-12
 Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 2/107 (1%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTLDWKKCIGCNFCGQICPARAIEMTW-IEVDG 85
           L +  + P+TI  PYEK     ++RG    ++ KCI C  C  +CP     + W  E D 
Sbjct: 32  LSHTNRLPITIHYPYEKSITPERFRGRIHFEFDKCIACEVCVGVCPIDLPVVDWRFEKDI 91

Query: 86  KMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
           K ++  +  ID+G C FC  CV+ CPT  L   E Y L+T  D  EL
Sbjct: 92  KKKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTY-DRHEL 137


>pir||B72620 probable NADH-plastoquinone oxidoreductase subunit I APE1419 -
           Aeropyrum pernix (strain K1) >gi|5105102|dbj|BAA80416.1|
           (AP000061) 198aa long hypothetical NADH-plastoquinone
           oxidoreductase subunit I [Aeropyrum pernix]
           Length = 198
           
 Score = 74.5 bits (180), Expect = 1e-12
 Identities = 42/98 (42%), Positives = 54/98 (54%), Gaps = 8/98 (8%)

Query: 25  LGLKYLFKKPVTIKIPYEKIDPAPK--YRGFHTLDWKKCIGCNFCGQICPARAIEMTWIE 82
           +GLKY F  P    I Y K  P  +  YRGF  L+  KCI C  C +ICP+ A++M  + 
Sbjct: 41  IGLKY-FVNPRRFSIYYPKEYPELRQGYRGFIILNKAKCISCAACARICPSAAMKMIRVP 99

Query: 83  VDGKMEK-----RPHPKIDYGRCTFCQFCVDVCPTGAL 115
           V    E      +  P I+Y RC FC +CVD+CPT AL
Sbjct: 100 VPHPKEPEKKVTKQFPVINYQRCIFCGYCVDICPTEAL 137


>gi|11466585 NADH dehydrogenase subunit 8 [Rhodomonas salina]
           >gi|10444172|gb|AAG17746.1|AF288090_22 (AF288090) NADH
           dehydrogenase subunit 8 [Rhodomonas salina]
           Length = 162
           
 Score = 73.0 bits (176), Expect = 3e-12
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 24  WLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM 78
           W+ L+Y F++ VT+  P+EK   +P++RG H L       ++CI C  C  +CPA+AI +
Sbjct: 21  WMVLQYFFRRKVTLNYPFEKAVLSPRFRGEHALRRYFSGEERCIACKLCEAVCPAQAITI 80

Query: 79  TWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGAL 115
                     K     ID  +C FC  C + CP  A+
Sbjct: 81  ETESRADNSRKTSRYDIDMTKCIFCGLCQEACPVDAI 117


>sp|Q42599|NUIM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUNIT PRECURSOR (COMPLEX
           I-23KD) (CI-23KD) (COMPLEX I-28.5KD) (CI-28.5KD)
           >gi|1076356|pir||S52380 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain TYKY precursor - Arabidopsis thaliana
           >gi|666977|emb|CAA59061.1| (X84318) NADH dehydrogenase
           [Arabidopsis thaliana] >gi|3152573|gb|AAC17054.1|
           (AC002986) Match to NADH:ubiquinone oxidoreductase
           gb|X84318 from A.thaliana.  ESTs gb|Z27005, gb|T04711,
           gb|T45078 and gb|Z28689 come from this gene.
           [Arabidopsis thaliana]
           Length = 222
           
 Score = 72.6 bits (175), Expect = 4e-12
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 25  LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMT 79
           L LKY F   VTI  P+EK   +P++RG H L       ++CI C  C  +CPA+AI + 
Sbjct: 82  LTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIE 141

Query: 80  WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
             E +    +     ID  +C +C FC + CP  A+    ++   T   EE L
Sbjct: 142 AEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 194


>gb|AAG10813.1|AC011808_1 (AC011808) Putative  NADH-ubiquinone oxidoreductase [Arabidopsis
           thaliana]
           Length = 222
           
 Score = 72.6 bits (175), Expect = 4e-12
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 25  LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMT 79
           L LKY F   VTI  P+EK   +P++RG H L       ++CI C  C  +CPA+AI + 
Sbjct: 82  LTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIE 141

Query: 80  WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
             E +    +     ID  +C +C FC + CP  A+    ++   T   EE L
Sbjct: 142 AEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 194


>gb|AAF55234.1| (AE003710) CG3944 gene product [Drosophila melanogaster]
           Length = 217
           
 Score = 72.2 bits (174), Expect = 5e-12
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 5/111 (4%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMTWI 81
           L ++FK+P TI  P+EK   +P++RG H L       ++CI C  C  ICPA+AI +   
Sbjct: 79  LAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 138

Query: 82  EVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
           E      +     ID  +C +C FC + CP  A+    ++  +T   EE L
Sbjct: 139 ERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELL 189


>gi|11525681 NADH dehydrogenase (ubiquinone) Fe-S protein 8 (23kD)
           (NADH-coenzyme Q reductase) [Homo sapiens]
           Length = 210
           
 Score = 71.8 bits (173), Expect = 7e-12
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMTWI 81
           L YLF++P TI  P+EK   +P++RG H L       ++CI C  C  ICPA+AI +   
Sbjct: 72  LSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 131

Query: 82  EVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
                  +     ID  +C +C FC + CP  A+    ++  +T   EE L
Sbjct: 132 PRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELL 182


>gi|4505371 NADH dehydrogenase (ubiquinone) Fe-S protein 8 (23kD)
           (NADH-coenzyme Q reductase); NADH dehydrogenase
           (ubiquinone) Fe-S protein 8 (23kD) (NADH-coenzyme Q
           [Homo sapiens] >gi|2499325|sp|O00217|NUIM_HUMAN
           NADH-UBIQUINONE OXIDOREDUCTASE 23 KD SUBUNIT PRECURSOR
           (COMPLEX I-23KD) (CI-23KD) (TYKY SUBUNIT)
           >gi|1935056|gb|AAB51776.1| (U65579) mitochondrial NADH
           dehydrogenase-ubiquinone Fe-S protein 8, 23 kDa subunit
           precursor [Homo sapiens] >gi|3523123|gb|AAC34273.1|
           (AF038406) NADH dehydrogenase-ubiquinone Fe-S protein 8
           23 kDa subunit; mitochondrial complex I TYKY subunit
           [Homo sapiens]
           Length = 210
           
 Score = 71.8 bits (173), Expect = 7e-12
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMTWI 81
           L YLF++P TI  P+EK   +P++RG H L       ++CI C  C  ICPA+AI +   
Sbjct: 72  LSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 131

Query: 82  EVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
                  +     ID  +C +C FC + CP  A+    ++  +T   EE L
Sbjct: 132 PRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELL 182


>emb|CAC14151.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
           [Sinorhizobium meliloti]
           Length = 210
           
 Score = 71.8 bits (173), Expect = 7e-12
 Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 8/100 (8%)

Query: 29  YLFKKPVTIKIP-YEKIDPAPKYRGFHTLDWK-----KCIGCNFCGQICPARAIEMTWIE 82
           Y+F +PVT++ P  EK  P  +YRG H L        KC+ C  C +ICP   IE+   E
Sbjct: 52  YMFSRPVTMQYPDKEKWLPYSRYRGHHFLKRDDEGEIKCVACELCARICPCDCIEVVPYE 111

Query: 83  VDGKMEKRPHP-KIDYGRCTFCQFCVDVCPTGALGFIESY 121
            D K  +RP   +ID  RC FC  C D CP  A+   + Y
Sbjct: 112 -DEKGNRRPAKFEIDTARCLFCGLCEDACPADAIALGQQY 150


>sp|P42028|NUIM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 23 KD SUBUNIT PRECURSOR (COMPLEX
           I-23KD) (CI-23KD) (TYKY SUBUNIT) >gi|108808|pir||A38409
           NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) 23K chain
           precursor - bovine >gi|163418|gb|AAA30664.1| (M58717)
           NADH dehydrogenase (ubiquinone) [Bos taurus]
           Length = 212
           
 Score = 71.4 bits (172), Expect = 9e-12
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMTWI 81
           L YLF++P TI  P+EK   +P++RG H L       ++CI C  C  +CPA+AI +   
Sbjct: 74  LSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAE 133

Query: 82  EVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
                  +     ID  +C +C FC + CP  A+    ++  +T   EE L
Sbjct: 134 PRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELL 184


>pir||C71018 probable NADH-plastoquinone oxidoreductase subunit - Pyrococcus
           horikoshii >gi|3257864|dbj|BAA30547.1| (AP000006) 136aa
           long hypothetical NADH-plastoquinone oxidoreductase
           subunit [Pyrococcus horikoshii]
           Length = 136
           
 Score = 71.0 bits (171), Expect = 1e-11
 Identities = 44/130 (33%), Positives = 66/130 (49%), Gaps = 14/130 (10%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAP---KYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEV 83
           +K LFK P T   P+ K +P P    +RG    +  KC+GC  C  +CPA      +I  
Sbjct: 11  IKNLFKSPATN--PFPKTEPIPVPDNFRGRIVYNVDKCVGCRMCVTVCPAGVF--VYIPE 66

Query: 84  DGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPLPPD 143
             K+       +  GRC FC+ CVDVCPTGAL   + ++L +    +E  ++   P   +
Sbjct: 67  IRKVA------LWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIY-VTPQDVE 119

Query: 144 KFRELQEEYK 153
           + ++ QEE K
Sbjct: 120 EIKKKQEEIK 129


>gi|11466496 NADH dehydrogenase, subunit 8 [Reclinomonas americana]
           >gi|6225784|sp|O21233|NUIM_RECAM NADH-UBIQUINONE
           OXIDOREDUCTASE SUBUNIT 8 >gi|7430803|pir||S78127 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 8 -
           Reclinomonas americana (ATCC 50394) mitochondrion
           >gi|2258326|gb|AAD11860.1| (AF007261) NADH
           dehydrogenase, subunit 8 [Reclinomonas americana]
           Length = 162
           
 Score = 70.6 bits (170), Expect = 1e-11
 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 7/114 (6%)

Query: 25  LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM- 78
           L L Y F+K VT+  P+EK   +P++RG H L       ++CI C  C  ICPA+AI + 
Sbjct: 22  LTLDYFFRKKVTLNYPFEKGPLSPRFRGEHALRRYQTGEERCIACKLCEAICPAQAITIE 81

Query: 79  TWIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
           +   +DG   +     ID  +C +C FC + CP  A+    ++   T   EE L
Sbjct: 82  SEPRIDGS-RRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 134


>sp|O24143|NUIM_TOBAC NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUNIT PRECURSOR (COMPLEX
           I-23KD) (CI-23KD) (COMPLEX I-28.5KD) (CI-28.5KD)
           >gi|1666177|emb|CAA70326.1| (Y09109) NADH dehydrogenase
           [Nicotiana tabacum]
           Length = 230
           
 Score = 70.2 bits (169), Expect = 2e-11
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 25  LGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMT 79
           L LKY F+K VTI  P+EK   +P++RG   L       ++CI C  C  ICPA+AI + 
Sbjct: 90  LTLKYFFEKKVTINYPFEKGPLSPRFRGEQPLRRYPTGEERCIACKLCEAICPAQAITIE 149

Query: 80  WIEVDGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEEL 132
               +    +     ID  +C +C FC + CP  A+    ++   T   EE L
Sbjct: 150 AEAREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELL 202


>sp|Q56224|NQO9_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 9 (NADH DEHYDROGENASE 1, CHAIN
           9) (NDH-1, CHAIN 9) >gi|7451621|pir||T11906 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO9 -
           Thermus aquaticus thermophilus
           >gi|1279869|gb|AAA97946.1| (U52917) NADH dehydrogenase
           I, subunit NQO9 [Thermus thermophilus]
           Length = 182
           
 Score = 69.9 bits (168), Expect = 3e-11
 Identities = 39/101 (38%), Positives = 53/101 (51%), Gaps = 13/101 (12%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEMTWI 81
           LKYLF KPVT+  P   +   P++ G H L       +KCIGC+ C   CPA AI +   
Sbjct: 14  LKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPA 73

Query: 82  EVD-------GKMEKRPHPKIDYGRCTFCQFCVDVCPTGAL 115
           E D       G+   + + +I+  RC FC  C + CPTGA+
Sbjct: 74  ENDPENPVSAGERYAKVY-EINMLRCIFCGLCEEACPTGAI 113


>pir||T34616 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nuoI -
           Streptomyces coelicolor >gi|5042269|emb|CAB44523.1|
           (AL078618) nuoI, NADH dehydrogenase subunit
           [Streptomyces coelicolor]
           Length = 211
           
 Score = 69.5 bits (167), Expect = 3e-11
 Identities = 42/124 (33%), Positives = 61/124 (48%), Gaps = 21/124 (16%)

Query: 18  PSFVKPWLGL----KYLFKKPVTIKIPYEKIDPAPKYRGFHTLD-----WKKCIGCNFCG 68
           P F+ P  G     K +FKK +T + P ++   AP++ G H L+      +KC+GC  C 
Sbjct: 8   PGFMNPVAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCA 67

Query: 69  QICPARAIEMTWIE-VDGKMEKRPHP--------KIDYGRCTFCQFCVDVCPTGALGFIE 119
             CPA AI   ++E  D   E+R  P        +I+Y RC  C  C++ CPT AL    
Sbjct: 68  WACPADAI---YVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTN 124

Query: 120 SYIL 123
            + L
Sbjct: 125 EFEL 128


>pir||H75114 co-induced hydrogenase related, chain X PAB1894 - Pyrococcus abyssi
           (strain Orsay) >gi|5458144|emb|CAB49633.1| (AJ248285)
           CO-induced hydrogenase related, subunit X [Pyrococcus
           abyssi]
           Length = 138
           
 Score = 68.7 bits (165), Expect = 6e-11
 Identities = 39/131 (29%), Positives = 67/131 (50%), Gaps = 17/131 (12%)

Query: 27  LKYLFKKPVTIKIPYEKIDPAP---KYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEV 83
           +K LFK P T   P+ K +P P    +RG    +  KC+GC  C  +CPA          
Sbjct: 11  IKNLFKPPATN--PFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----- 63

Query: 84  DGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPLPPD 143
              + +     +  GRC FC+ CVDVCPTGAL   + ++L +    +E     ++ + P+
Sbjct: 64  ---LPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDE----KFIYVTPE 116

Query: 144 KFRELQEEYKD 154
           + +E++++ ++
Sbjct: 117 EAQEIKKKLEE 127


>pir||D75390 NADH dehydrogenase I, I subunit - Deinococcus radiodurans  (strain
           R1) >gi|6459254|gb|AAF11060.1|AE001993_10 (AE001993)
           NADH dehydrogenase I, I subunit [Deinococcus
           radiodurans]
           Length = 178
           
 Score = 68.7 bits (165), Expect = 6e-11
 Identities = 36/98 (36%), Positives = 51/98 (51%), Gaps = 12/98 (12%)

Query: 30  LFKKPVTIKIPYEKIDPAPKYRGFHTLD------WKKCIGCNFCGQICPARAIEMTWIEV 83
           LF+KP+T+  P ++    P++RG H L        +KCIGC+ C   CPA AI +   E 
Sbjct: 17  LFQKPLTVSYPEQRATLQPRFRGRHVLTRHPDTGLEKCIGCSLCAAACPAYAIYVEAAEN 76

Query: 84  DGKMEKRPHPK------IDYGRCTFCQFCVDVCPTGAL 115
           D +    P  +      I+  RC FC  C + CPTGA+
Sbjct: 77  DPRDPVSPGERYAKVYEINMLRCIFCGLCEEACPTGAV 114


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.142    0.461 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97133944
Number of Sequences: 2977
Number of extensions: 4540173
Number of successful extensions: 15864
Number of sequences better than 1.0e-10: 41
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 15740
Number of HSP's gapped (non-prelim): 46
length of query: 214
length of database: 189,106,746
effective HSP length: 47
effective length of query: 167
effective length of database: 160,977,857
effective search space: 26883302119
effective search space used: 26883302119
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)