BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0498 (PAB0498) DE:Hypothetical protein
(640 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75114 hypothetical protein PAB0498 - Pyrococcus abyssi (st... 1262 0.0
pir||E71018 hypothetical protein PH1442 - Pyrococcus horikoshii ... 1041 0.0
pir||E64464 hypothetical protein MJ1318 - Methanococcus jannasch... 338 1e-91
gi|11498312 conserved hypothetical protein [Archaeoglobus fulgid... 304 2e-81
pir||C72454 hypothetical protein APE2279 - Aeropyrum pernix (str... 154 2e-36
dbj|BAB06770.1| (AP001517) ATP-dependent proteinase La [Bacillus... 75 2e-12
pir||A72230 endopeptidase La (EC 3.4.21.53) - Thermotoga maritim... 74 4e-12
sp|P36773|LON1_MYXXA ATP-DEPENDENT PROTEASE LA 1 >gi|540928|pir|... 71 3e-11
>pir||F75114 hypothetical protein PAB0498 - Pyrococcus abyssi (strain Orsay)
>gi|5458142|emb|CAB49631.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 640
Score = 1262 bits (3229), Expect = 0.0
Identities = 640/640 (100%), Positives = 640/640 (100%)
Query: 1 METVKLKRIFALLLLISVLISPAFAQCPCEGRTVVLKAPAVSMTSTGELVGVPTDFVITV 60
METVKLKRIFALLLLISVLISPAFAQCPCEGRTVVLKAPAVSMTSTGELVGVPTDFVITV
Sbjct: 1 METVKLKRIFALLLLISVLISPAFAQCPCEGRTVVLKAPAVSMTSTGELVGVPTDFVITV 60
Query: 61 APGSGHVYVETWPLTQVDMQASARLAAEVAGRVLGIDMSKYDVFIQVKADSPIIGGPSAG 120
APGSGHVYVETWPLTQVDMQASARLAAEVAGRVLGIDMSKYDVFIQVKADSPIIGGPSAG
Sbjct: 61 APGSGHVYVETWPLTQVDMQASARLAAEVAGRVLGIDMSKYDVFIQVKADSPIIGGPSAG 120
Query: 121 GTMTVGIIAAIMGWEIRKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIFLIPEGQR 180
GTMTVGIIAAIMGWEIRKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIFLIPEGQR
Sbjct: 121 GTMTVGIIAAIMGWEIRKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIFLIPEGQR 180
Query: 181 IQVVTETKSKQIGPITQITTTQRRVDVAKYAQERWGLKVIEIRDIYDAVYYFTGHKLERP 240
IQVVTETKSKQIGPITQITTTQRRVDVAKYAQERWGLKVIEIRDIYDAVYYFTGHKLERP
Sbjct: 181 IQVVTETKSKQIGPITQITTTQRRVDVAKYAQERWGLKVIEIRDIYDAVYYFTGHKLERP 240
Query: 241 KPKGKVIVSTSFLEKYARTDYDETMNYYNDVKDKLVNSDVGYSTYTYLKAALDDAYNVLK 300
KPKGKVIVSTSFLEKYARTDYDETMNYYNDVKDKLVNSDVGYSTYTYLKAALDDAYNVLK
Sbjct: 241 KPKGKVIVSTSFLEKYARTDYDETMNYYNDVKDKLVNSDVGYSTYTYLKAALDDAYNVLK 300
Query: 301 QARDAIDQGKYYTAMSLDFQARIMIRHVDWYIDVYDGRDIEDVFFEVKNEINSVEKYVSN 360
QARDAIDQGKYYTAMSLDFQARIMIRHVDWYIDVYDGRDIEDVFFEVKNEINSVEKYVSN
Sbjct: 301 QARDAIDQGKYYTAMSLDFQARIMIRHVDWYIDVYDGRDIEDVFFEVKNEINSVEKYVSN 360
Query: 361 LTIKGVTMLQAVAASETRIEEAKEYLKKAQASYYNQDYWNAVGNAAYAYERAKTAELWAK 420
LTIKGVTMLQAVAASETRIEEAKEYLKKAQASYYNQDYWNAVGNAAYAYERAKTAELWAK
Sbjct: 361 LTIKGVTMLQAVAASETRIEEAKEYLKKAQASYYNQDYWNAVGNAAYAYERAKTAELWAK 420
Query: 421 LGEEFAKGSIISRDSIKKAAREQLDNAKLIVMYITSMFGQQNLNDLMDLLDKGERYYEDG 480
LGEEFAKGSIISRDSIKKAAREQLDNAKLIVMYITSMFGQQNLNDLMDLLDKGERYYEDG
Sbjct: 421 LGEEFAKGSIISRDSIKKAAREQLDNAKLIVMYITSMFGQQNLNDLMDLLDKGERYYEDG 480
Query: 481 KYSAALFSAMEARIRGEVILDTIGIENVSVLRDKLSMMKEEAKTAIGLAQEGGTLPLLSM 540
KYSAALFSAMEARIRGEVILDTIGIENVSVLRDKLSMMKEEAKTAIGLAQEGGTLPLLSM
Sbjct: 481 KYSAALFSAMEARIRGEVILDTIGIENVSVLRDKLSMMKEEAKTAIGLAQEGGTLPLLSM 540
Query: 541 AYYEFAESYEAKGDMQDIITAMVFYQYAKETALVFQEWKKSSSQEVKTTISSPISTQTPS 600
AYYEFAESYEAKGDMQDIITAMVFYQYAKETALVFQEWKKSSSQEVKTTISSPISTQTPS
Sbjct: 541 AYYEFAESYEAKGDMQDIITAMVFYQYAKETALVFQEWKKSSSQEVKTTISSPISTQTPS 600
Query: 601 QTSTTTKSTSTPSTTQTTTSICGPASLVLVAAIVALFKRR 640
QTSTTTKSTSTPSTTQTTTSICGPASLVLVAAIVALFKRR
Sbjct: 601 QTSTTTKSTSTPSTTQTTTSICGPASLVLVAAIVALFKRR 640
>pir||E71018 hypothetical protein PH1442 - Pyrococcus horikoshii
>gi|3257866|dbj|BAA30549.1| (AP000006) 638aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 638
Score = 1041 bits (2663), Expect = 0.0
Identities = 520/640 (81%), Positives = 578/640 (90%), Gaps = 2/640 (0%)
Query: 1 METVKLKRIFALLLLISVLISPAFAQCPCEGRTVVLKAPAVSMTSTGELVGVPTDFVITV 60
M ++ K + L L++ +L PA+AQCP EGRTV LKAPAVS+TSTGELVGVPTDF+ITV
Sbjct: 1 MVRMRKKVLMPLFLILMLLAIPAYAQCPYEGRTVTLKAPAVSVTSTGELVGVPTDFIITV 60
Query: 61 APGSGHVYVETWPLTQVDMQASARLAAEVAGRVLGIDMSKYDVFIQVKADSPIIGGPSAG 120
APGSGHVYVETWPLTQVDMQASARLAAEVAGRVLG+DMSKYDVFIQVKADSPIIGGPSAG
Sbjct: 61 APGSGHVYVETWPLTQVDMQASARLAAEVAGRVLGVDMSKYDVFIQVKADSPIIGGPSAG 120
Query: 121 GTMTVGIIAAIMGWEIRKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIFLIPEGQR 180
GTMTVGIIAAIMGW+IRKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIFLIPEGQR
Sbjct: 121 GTMTVGIIAAIMGWDIRKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIFLIPEGQR 180
Query: 181 IQVVTETKSKQIGPITQITTTQRRVDVAKYAQERWGLKVIEIRDIYDAVYYFTGHKLERP 240
IQVVTE+KS+QIGPITQITTTQR+VDV KYAQERWGLKVIE++DIYDAVYYFTGHKLERP
Sbjct: 181 IQVVTESKSRQIGPITQITTTQRKVDVVKYAQERWGLKVIEVKDIYDAVYYFTGHKLERP 240
Query: 241 KPKGKVIVSTSFLEKYARTDYDETMNYYNDVKDKLVNSDVGYSTYTYLKAALDDAYNVLK 300
KP+ VI++TSFLE A+ DY ET +YYN++K KL SDVGYSTY+YLKAALDDA LK
Sbjct: 241 KPRTNVIINTSFLESEAKKDYKETEDYYNEIKRKLAESDVGYSTYSYLKAALDDASRTLK 300
Query: 301 QARDAIDQGKYYTAMSLDFQARIMIRHVDWYIDVYDGRDIEDVFFEVKNEINSVEKYVSN 360
A D+++Q KYYTAMSLDFQARI+IRHVDWYIDVY+G+DI+D+F EVK+EI SVE YVSN
Sbjct: 301 MAEDSLNQEKYYTAMSLDFQARIIIRHVDWYIDVYEGKDIDDIFSEVKDEIKSVENYVSN 360
Query: 361 LTIKGVTMLQAVAASETRIEEAKEYLKKAQASYYNQDYWNAVGNAAYAYERAKTAELWAK 420
LTIKGVTMLQ VAASETRIEEAKEYLK+A+ASYYNQDYWNAVGNAAYAYERAKTAELWAK
Sbjct: 361 LTIKGVTMLQTVAASETRIEEAKEYLKEAEASYYNQDYWNAVGNAAYAYERAKTAELWAK 420
Query: 421 LGEEFAKGSIISRDSIKKAAREQLDNAKLIVMYITSMFGQQNLNDLMDLLDKGERYYEDG 480
LGE+FA ++ISRD+IKKAAR+QLDNAKLIVMYITSMFG+QNL DL+DLL+KGE YYEDG
Sbjct: 421 LGEKFAGKTVISRDAIKKAARDQLDNAKLIVMYITSMFGEQNLKDLVDLLNKGEEYYEDG 480
Query: 481 KYSAALFSAMEARIRGEVILDTIGIENVSVLRDKLSMMKEEAKTAIGLAQEGGTLPLLSM 540
KYSAALFSAMEARIRGEVILDTIGIENVSVL+DKLSMMKE+AK AIGLAQEGGTLPLLS+
Sbjct: 481 KYSAALFSAMEARIRGEVILDTIGIENVSVLKDKLSMMKEDAKNAIGLAQEGGTLPLLSI 540
Query: 541 AYYEFAESYEAKGDMQDIITAMVFYQYAKETALVFQEWKKSSSQEVKTTISSPISTQTPS 600
AYYEFAESYEAKGD+QDIITAMVFYQYAKETALVFQEWK ISSPI T T +
Sbjct: 541 AYYEFAESYEAKGDLQDIITAMVFYQYAKETALVFQEWKVKVG-NTSEVISSPIVTTTTT 599
Query: 601 QTSTTTKSTSTPSTTQTTTSICGPASLVLVAAIVALFKRR 640
+STTT +T+T +T +TSICGP L+L+ ++AL +RR
Sbjct: 600 TSSTTTSTTTTTTTQLPSTSICGPGILLLL-PLLALIRRR 638
>pir||E64464 hypothetical protein MJ1318 - Methanococcus jannaschii
>gi|1591957|gb|AAB99325.1| (U67571) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 602
Score = 338 bits (858), Expect = 1e-91
Identities = 217/615 (35%), Positives = 337/615 (54%), Gaps = 56/615 (9%)
Query: 6 LKRIFALLLLISVLISPAFAQCPCEGRTVVLKAPAVSMTSTGELVGVPTDFVITVAPGSG 65
+K+I LLL I+ L++ AFA V++KAPAVS+T G VGVP + I V G G
Sbjct: 8 MKKILTLLL-ITFLLNSAFA--------VIIKAPAVSLTDRG-YVGVPINIQINVTKGDG 57
Query: 66 HVYVETWPLTQVDMQASARLAAEVAGRVLGIDMSKYDVFIQVKADSPIIGGPSAGGTMTV 125
HV+++T PLT++DMQ SAR+AA+VAG V G DMSKY+V+I V++D P++GGPSAGGTMT+
Sbjct: 58 HVFMDTMPLTELDMQGSARIAAKVAGEVTGKDMSKYNVYITVRSDVPVVGGPSAGGTMTI 117
Query: 126 GIIAAIMGWEIRKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIFLIPEGQRIQVVT 185
GII +M W + K VMMTG INPDGSIGPVGGILEK AA +A I LIP+GQR V
Sbjct: 118 GIICELMNWSLNKHVMMTGTINPDGSIGPVGGILEKIEAAKKANCTIMLIPKGQRYVEVE 177
Query: 186 ETKSKQIGPITQITTTQRRVDVAKYAQERWGLKVIEIRDIYDAVYYFTGHKLERPKPKGK 245
K VD ++ + + G+KVIE+ IY+A+ YFT K+ +
Sbjct: 178 GNK----------------VDAVEFGK-KLGIKVIEVGSIYEAIPYFTNKKIIMKEYPEN 220
Query: 246 VIVSTSFLE--KYARTDYDETMNY-YNDVKDKLVNSDVGYSTYTYLKAALDDAYNVLKQA 302
++ + + K + +T N Y ++ +L NS VGY L L + ++L++A
Sbjct: 221 PLIEEKYKDIMKELSENVLKTANEKYENLSKELSNSYVGYEYQKALLNELTTSKSLLEKA 280
Query: 303 RDAIDQGKYYTAMSLDFQARIMIRHVDWYIDVYDGR-DIEDVFFEVKNEINSVEK--YVS 359
D + KYY+A F A I + ++ + G D++ EV+N+I+ ++ Y
Sbjct: 281 NDEYLKNKYYSATCSAFNALIKLETIEHTLKYLTGEEDVKTFLTEVQNKISHDKEIVYSK 340
Query: 360 NLTIKGVTMLQAVAASETRIEEAKEYLKKAQASYYNQDYWNAVGNAAYAYERAKTAELWA 419
N+T + + A RI EA++ L A SYY +Y A+ ++A R +A W
Sbjct: 341 NVTTNN---FEEILAGRIRIAEAEKLLDNAWKSYYLGNYDEAIKYGSFAKLRGDSAIWWV 397
Query: 420 KLGEEFAKGSIISRDSIKKAAREQLDNAKLIVMYITSMFGQQNLNDLMDLLDKGERYYED 479
L E G II+ +K A++ LDNA+ I+ Y+ ++F +DL + L+ + Y+D
Sbjct: 398 SLKENDNNGKIINEAKLKSLAQQYLDNAETILTYVETLFPNLPTDDLENDLESAKEAYKD 457
Query: 480 GKYSAALFSAMEARIRGEVILDTIGIENVSVLRDKLSMMKEEAKTAIGLAQEGGTLPLLS 539
G Y + +++ ++ E+ L G + K+ A+ I LA+ G P+ +
Sbjct: 458 GDYLLTIAESIDTCVKAEIPLVIFG---------DIEYSKKYARNKINLAENLGITPISA 508
Query: 540 MAYYEFAESYEAKGDMQDIITAMVFYQYAKETAL----VFQEWKKSSSQEVKTTISSPIS 595
+ YYE+A S + D I+ +++Y+Y+ A V +E KS S+ + + I+ ++
Sbjct: 509 LGYYEYANS------LNDTISKIMYYKYSSYYAQMDIDVIKELNKSISENISSEINI-VT 561
Query: 596 TQTPSQTSTTTKSTS 610
+ + TTTK +
Sbjct: 562 NENVNIEETTTKENN 576
>gi|11498312 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483042|pir||A69338 conserved hypothetical protein
AF0705 - Archaeoglobus fulgidus
>gi|2649911|gb|AAB90536.1| (AE001056) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 590
Score = 304 bits (771), Expect = 2e-81
Identities = 199/637 (31%), Positives = 341/637 (53%), Gaps = 49/637 (7%)
Query: 6 LKRIFALLLLISVLISPAFAQCPCEGRTVVLKAPAVSMTSTGELVGVPTDFVITVAPGSG 65
+K +L L+ +LI+PA AQ + + AV++TS + GV + + V PG G
Sbjct: 1 MKSALKILALMLILITPAGAQFENAQKASI---KAVAVTSGDQPTGVVINISVIVTPGDG 57
Query: 66 HVYVETWPLTQVDMQASARLAAEVAGRVLGIDMSKYDVFIQVKADSPIIGGPSAGGTMTV 125
V+V T P T++DMQ SA+LAA A +LGID +KYD F ++A++PI+GGPSAGG +TV
Sbjct: 58 RVFVSTTPYTEIDMQGSAQLAAITACDLLGIDFTKYDFFYIIEAEAPIVGGPSAGGVLTV 117
Query: 126 GIIAAIMGWEIRKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIFLIPEGQRIQVVT 185
+AA+ IR DV MTGMI PDG IGPVGG+ K AA + GAKIFLIP+GQRI V
Sbjct: 118 ATVAALKNLTIRDDVYMTGMIYPDGYIGPVGGLKYKLEAAAKNGAKIFLIPQGQRITYVE 177
Query: 186 ETKSKQIGPITQITTTQRRVDVAKYAQERWGLKVIEIRDIYDAVYYFTGHKLERPKPKGK 245
E K +++G I+ I + +D+ +Y ++ G+ V E+ + DA+ +FTG+++++P+ +
Sbjct: 178 EKKVRRVGIISYIEVEYKELDLVEYG-KKLGVNVYEVATLNDALKFFTGYEIKQPEGQFN 236
Query: 246 VIVSTSFLEKYARTDYDETMNYYNDVKDKLVNSDVGYSTYTYLKAALDDAYNVLKQARDA 305
+ + L+K A D ++ + A +DA ++K+A +
Sbjct: 237 IGSYSQILKKLA---------------------DRMKASLDEVTATSEDAEKLIKKADEF 275
Query: 306 IDQGKYYTAMSLDFQARIMIRHVDWYIDVYDGRDIEDVFFEVKNEINSVEKYVSNLTIKG 365
+GKYYTA S FQA+I+ R+ ++ + + ++ +++NEI+ ++ Y++ + G
Sbjct: 276 YKEGKYYTATSTYFQAKILKRYEEYKSKIVTAQQFDEEVGKIQNEIDQLKDYLAKEKM-G 334
Query: 366 VTMLQAVAASETRIEEAKEYLKKAQASYYNQDYWNAVGNAAYAYERAKTAELWAKLGEEF 425
V LQ +AA++ R+ EA+ L+ A+ + + + A+ AYA ER ++A++W + +
Sbjct: 335 VNSLQIIAAAQERVAEAENLLENAKNAKSDDE---ALQYLAYAKERVESAKVWLSILPDL 391
Query: 426 AKGSIISRDSIKKAAREQLDNAKLIVMYITSMFGQQNL-NDLMDLLDKGERYYEDGKYSA 484
IS+D++K+ A + A +++Y +S+ G + L N + LD +R +G Y+
Sbjct: 392 KNDYEISKDALKRRAEFYVTQASSLLIYASSLNGNEYLINQGFESLDTAKRLLSEGLYAG 451
Query: 485 ALFSAMEARIRGEVILDTIGIENVSVLRDKLSMMKEEAKTAIGLAQEGGTLPLLSMAYYE 544
A A+ + + ++ + DK+ +E A AI A E P+L AY+E
Sbjct: 452 AAVMALNSITDASLSIEV----TYGKIDDKVEGAREAAMAAISEA-EKSLFPVLPAAYFE 506
Query: 545 FAESYEAKGDMQDIITAMVFYQYAKETALVFQEWKKSSSQ-EVKTTISSPISTQTPSQTS 603
+AE ++ + +++Y+ + A + S + E+ +P + TPS S
Sbjct: 507 YAE------NLDNQYAKLMYYKLSMRLAKLLSLMVSSGGEKELVHAEFNPYTHYTPSGKS 560
Query: 604 TTTKSTSTPSTTQTTTSICGPASLVLVAAIVALFKRR 640
T + TP G A++ + A +RR
Sbjct: 561 TIERIVETPGFE-------GLAAVTAITAAAIAARRR 590
>pir||C72454 hypothetical protein APE2279 - Aeropyrum pernix (strain K1)
>gi|5105980|dbj|BAA81291.1| (AP000064) 691aa long
hypothetical protein [Aeropyrum pernix]
Length = 691
Score = 154 bits (386), Expect = 2e-36
Identities = 172/656 (26%), Positives = 283/656 (42%), Gaps = 69/656 (10%)
Query: 12 LLLLISVLISPAFAQCPC--EGRTVVLKAPAVSMTSTGELVGVPTDFVITVA-PGSGHVY 68
LL +I V +PA +G ++ V+++S+GE G ++TV PG G VY
Sbjct: 63 LLTIILVASAPALTALSNSEDGFQASCESIIVAVSSSGE--GATGRLIVTVRYPGEGRVY 120
Query: 69 VETWPLTQVDMQASARLAAEVAGRVLGIDMSKYDVFIQVKADSPIIGGPSAGGTMTVGII 128
+ T P +Q+D SAR+AA A G+DMS D + +++ S ++GGPSAG M +
Sbjct: 121 ISTSPASQLDTLGSARVAAFAASLAAGVDMSSLDFYYVLESKSIVVGGPSAGLAMALATY 180
Query: 129 AAIMGWEIRKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIFLIPEGQRIQVVTETK 188
+ + TGMI PD S+GPVGG+ EK AA +GAK+FLIP GQ K
Sbjct: 181 SLLTTGSCLDGYAATGMILPDTSVGPVGGLKEKLEAAASSGAKVFLIPHGQEKYTYIARK 240
Query: 189 SKQIGPITQITTTQRRVDVAKYAQERWGLKVIEIRDIYDAVYYFTGHKLERPKPKGKVIV 248
++ GPI +I +T +D+ +Y + G+ VI + + +A L P P+ +V
Sbjct: 241 VERNGPIVRIVSTPISIDLVEYGRS-LGVNVIGVSTLAEA-----AEALGLPVPEARVPP 294
Query: 249 STSFLEKYARTDYDETMNYYNDVKDKLVNSDVGYSTYTYLKAALDDAYNVLKQARDAIDQ 308
S S T++ Y L S G S + AL+ + L A D
Sbjct: 295 SPS-------QQLTATLSQYTLETVNLARSLAGDSDNVLAQKALELSDRALDLAND---- 343
Query: 309 GKYYTAMSLDFQARIMIRHVDWYIDVYDGR----DIEDVFFEVKNEINSVEKYVSNLTIK 364
+Y A ++ A + + I+V + + D+ ++ E +N I V + + +
Sbjct: 344 -DFYYASAV--YATLAYSYARASIEVSEAKDGDFDVTELVEESRNSIAGVMEKLGGIEEV 400
Query: 365 GVTMLQAVAASETRIEEAK-EY------LKKAQASYY------NQDYWNAVGNAAYAYER 411
V L AV + + EA EY L + Y+ + + V + A
Sbjct: 401 TVANLDAVLKAYGVLGEASYEYSNGLGMLVEKNGRYFIPVSILGEANYEGVLRVSSALSL 460
Query: 412 AKTAELWAKLGEEFAKGSIISRDSIKKAAREQLDNAKLIVMYITSMFGQQNLNDLMDLLD 471
A+ A LWA + E G+ + ++K AR A Y+ + +
Sbjct: 461 ARWAGLWATVAEASQSGAPLEGAVLEKLARVMESQAATTTAYVIQIGS-----------E 509
Query: 472 KGERYYEDGKYSAALFSAMEARIRGEVILDTIG--IENVSVLRDKL--SMMKEEAKTAIG 527
G+R YE +Y +L A + L+T G IE ++ L + + TA G
Sbjct: 510 TGKRGYERAEYLVSL-----ALSTKDNPLETAGYSIEAIAAASSYLHEAFTLDPEATAQG 564
Query: 528 LAQEGG----TLPLLSMAYYEFA-ESYEAKGDMQDIITAMVFYQYAKETALVFQEWKKSS 582
+ G LP S Y + A S +A +Q ++T+ Y AL +K S
Sbjct: 565 ITALAGYIASRLPEDSSQYPKAALASIDAMEGIQLLLTSSKALLYLDAVALALGIGEKPS 624
Query: 583 S--QEVKTTISSPISTQTPSQTSTTTKSTSTPSTTQTTTSICGPASLVLVAAIVAL 636
S +++T + I T ++ ST T + + + + + +L+ AI++L
Sbjct: 625 SPGSNLESTSTETIYVTTVTRESTVTVTRTIENMVPVEHGVEAYSIAILLVAILSL 680
>dbj|BAB06770.1| (AP001517) ATP-dependent proteinase La [Bacillus halodurans]
Length = 556
Score = 74.9 bits (181), Expect = 2e-12
Identities = 58/195 (29%), Positives = 90/195 (45%), Gaps = 16/195 (8%)
Query: 26 QCPCEGRTVVLKAPAVSMTSTGELVGVPTDFVITVAPGSGHVYVETWPLTQVDMQASARL 85
Q P E + ++ AV +TG L+ V D + +VA GS + + S R
Sbjct: 345 QIPSEPKVGLVNGLAVFGPNTGALLEVEVDVIPSVAEGSVTITGIAEEEQTGNQARSIRR 404
Query: 86 AAEVAGRV---------LGIDMSKYDVFIQVKADSPIIGGPSAGGTMTVGIIAAIMGWEI 136
+ G V + + + +YD+ I +P+ GPSAG + GI +AI ++
Sbjct: 405 KSMAKGSVENVLTVLKKMDLPIDQYDIHINFPGGAPV-DGPSAGVAIATGIYSAIKEEKV 463
Query: 137 RKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIFLIPEGQRIQVVTETKSKQIGPIT 196
V MTG I+ G++ PVGGI+ K AA +GAK LIP+ ++ E + I P+
Sbjct: 464 DNTVAMTGEISIHGTVKPVGGIVAKVEAAKASGAKTVLIPKENEQAILQEIEGITIIPMK 523
Query: 197 QITTTQRRVDVAKYA 211
+ DV YA
Sbjct: 524 HLD------DVLSYA 532
>pir||A72230 endopeptidase La (EC 3.4.21.53) - Thermotoga maritima (strain
MSB8) >gi|4982206|gb|AAD36700.1|AE001806_10 (AE001806)
ATP-dependent protease LA [Thermotoga maritima]
Length = 787
Score = 74.1 bits (179), Expect = 4e-12
Identities = 50/126 (39%), Positives = 71/126 (55%), Gaps = 6/126 (4%)
Query: 62 PGSGHVYVETWPLTQVDMQASARLAAEVAGRVLGID----MSKYDVFIQVKADSPIIGGP 117
PG G++ + T + V M+ SAR+A V ++ G + K D+ I V + GP
Sbjct: 635 PGRGNLIL-TGNMGDV-MKESARIALSVVRKMCGEECREVFEKNDIHIHVPEGAVPKDGP 692
Query: 118 SAGGTMTVGIIAAIMGWEIRKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIFLIPE 177
SAG T+TV + +A+ G ++R+DV MTG I G I PVGGI EK AA +AG K ++P
Sbjct: 693 SAGITITVALYSAVTGKKVRRDVAMTGEITLRGKILPVGGIKEKLLAAKRAGIKKVILPS 752
Query: 178 GQRIQV 183
R V
Sbjct: 753 RNRPDV 758
>sp|P36773|LON1_MYXXA ATP-DEPENDENT PROTEASE LA 1 >gi|540928|pir||A49844 endopeptidase La
(EC 3.4.21.53) 1 - Myxococcus xanthus
>gi|303712|dbj|BAA02307.1| (D12923) ATP-dependent
protease La [Myxococcus xanthus]
>gi|4838466|gb|AAD31005.1|AF127082_4 (AF127082)
ATP-dependent protease LonV [Myxococcus xanthus]
Length = 817
Score = 71.4 bits (172), Expect = 3e-11
Identities = 44/127 (34%), Positives = 68/127 (52%), Gaps = 6/127 (4%)
Query: 59 TVAPGSGHVYVETWPLTQVDMQASARLAAEVAGRV--LGID---MSKYDVFIQVKADSPI 113
T+ PG G + + T L +V +++ + V R GID YD+ + + +
Sbjct: 628 TIMPGKGKLII-TGKLGEVMQESAQAAMSYVRSRAERFGIDRKVFENYDIHVHLPEGAIP 686
Query: 114 IGGPSAGGTMTVGIIAAIMGWEIRKDVMMTGMINPDGSIGPVGGILEKASAAHQAGAKIF 173
GPSAG T+ +++A+ IR+DV MTG I G + P+GG+ EK AAH+AG K
Sbjct: 687 KDGPSAGVTICTALVSALTRVLIRRDVAMTGEITLRGRVLPIGGLKEKTLAAHRAGIKTV 746
Query: 174 LIPEGQR 180
LIP+ +
Sbjct: 747 LIPKANK 753
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.132 0.367
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215927806
Number of Sequences: 2977
Number of extensions: 8879902
Number of successful extensions: 65748
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 65707
Number of HSP's gapped (non-prelim): 9
length of query: 640
length of database: 189,106,746
effective HSP length: 63
effective length of query: 577
effective length of database: 151,402,065
effective search space: 87358991505
effective search space used: 87358991505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 168 (69.9 bits)