BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0502 (PAB0502) DE:Hypothetical protein
(284 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75117 hypothetical protein PAB0502 - Pyrococcus abyssi (st... 580 e-165
pir||F71015 hypothetical protein PH1420 - Pyrococcus horikoshii ... 513 e-145
gi|11499138 A. fulgidus predicted coding region AF1543 [Archaeog... 124 1e-27
pir||H69201 hypothetical protein MTH762 - Methanobacterium therm... 85 7e-16
>pir||A75117 hypothetical protein PAB0502 - Pyrococcus abyssi (strain Orsay)
>gi|5458161|emb|CAB49650.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 284
Score = 580 bits (1480), Expect = e-165
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MGSKLSRYVNIDRVIEYIEMRRHNDGGYCFVSQLADTNINDTYYAIKIYSLLGIEVPEKE 60
MGSKLSRYVNIDRVIEYIEMRRHNDGGYCFVSQLADTNINDTYYAIKIYSLLGIEVPEKE
Sbjct: 1 MGSKLSRYVNIDRVIEYIEMRRHNDGGYCFVSQLADTNINDTYYAIKIYSLLGIEVPEKE 60
Query: 61 KTIEFLYDSAQMQTATVGVAMAIEGLAILGAKDLAKEKMELLFMKYNPLEDKFAVGLGGS 120
KTIEFLYDSAQMQTATVGVAMAIEGLAILGAKDLAKEKMELLFMKYNPLEDKFAVGLGGS
Sbjct: 61 KTIEFLYDSAQMQTATVGVAMAIEGLAILGAKDLAKEKMELLFMKYNPLEDKFAVGLGGS 120
Query: 121 EEFGTATPLEATYWAMRAMNSVNYRIDEEMREKIIEFVRRFKIGDAYGVTHPTTTMTYQA 180
EEFGTATPLEATYWAMRAMNSVNYRIDEEMREKIIEFVRRFKIGDAYGVTHPTTTMTYQA
Sbjct: 121 EEFGTATPLEATYWAMRAMNSVNYRIDEEMREKIIEFVRRFKIGDAYGVTHPTTTMTYQA 180
Query: 181 LYTLNSLGIKEKTRHFELCEVCGDWGGFTEVPNSLPPYIEPTFYALRGLELLGKRAGCID 240
LYTLNSLGIKEKTRHFELCEVCGDWGGFTEVPNSLPPYIEPTFYALRGLELLGKRAGCID
Sbjct: 181 LYTLNSLGIKEKTRHFELCEVCGDWGGFTEVPNSLPPYIEPTFYALRGLELLGKRAGCID 240
Query: 241 SHIKFIRSLQNQNGGFRRSYELGISTFQNTYRALASLNILIRWV 284
SHIKFIRSLQNQNGGFRRSYELGISTFQNTYRALASLNILIRWV
Sbjct: 241 SHIKFIRSLQNQNGGFRRSYELGISTFQNTYRALASLNILIRWV 284
>pir||F71015 hypothetical protein PH1420 - Pyrococcus horikoshii
>gi|3257843|dbj|BAA30526.1| (AP000006) 284aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 284
Score = 513 bits (1307), Expect = e-145
Identities = 242/284 (85%), Positives = 267/284 (93%)
Query: 1 MGSKLSRYVNIDRVIEYIEMRRHNDGGYCFVSQLADTNINDTYYAIKIYSLLGIEVPEKE 60
MGSKLSRY+N+++V+EYIE RRH DGGYCFVSQLADTNINDTYYA+KIYSLLG+EVPEKE
Sbjct: 1 MGSKLSRYINLEKVLEYIEKRRHEDGGYCFVSQLADTNINDTYYAVKIYSLLGMEVPEKE 60
Query: 61 KTIEFLYDSAQMQTATVGVAMAIEGLAILGAKDLAKEKMELLFMKYNPLEDKFAVGLGGS 120
KTIEFLY+SAQMQTA VGVAMAIE L+ILGAKDLA++KM LLF KYNPLE+KFAVGLGGS
Sbjct: 61 KTIEFLYNSAQMQTAAVGVAMAIEALSILGAKDLARDKMNLLFEKYNPLENKFAVGLGGS 120
Query: 121 EEFGTATPLEATYWAMRAMNSVNYRIDEEMREKIIEFVRRFKIGDAYGVTHPTTTMTYQA 180
EEFGTATPLEATYW M+AMN+VNY+ EEM+ KIIEFV +F+IGD YGVTHPTTTMTYQA
Sbjct: 121 EEFGTATPLEATYWVMKAMNAVNYKPSEEMKNKIIEFVHKFRIGDGYGVTHPTTTMTYQA 180
Query: 181 LYTLNSLGIKEKTRHFELCEVCGDWGGFTEVPNSLPPYIEPTFYALRGLELLGKRAGCID 240
LYTL+SLG KE TRHFELCEVCGDWGGFTEVPNSLPPYIEPTFYALRGLELLG++A CI
Sbjct: 181 LYTLSSLGRKEDTRHFELCEVCGDWGGFTEVPNSLPPYIEPTFYALRGLELLGRKARCIK 240
Query: 241 SHIKFIRSLQNQNGGFRRSYELGISTFQNTYRALASLNILIRWV 284
+HI+FIRSLQNQNGGFRRSYELGISTFQNTYRALASL +L+RWV
Sbjct: 241 AHIRFIRSLQNQNGGFRRSYELGISTFQNTYRALASLEVLLRWV 284
>gi|11499138 A. fulgidus predicted coding region AF1543 [Archaeoglobus fulgidus]
>gi|7483655|pir||F69442 hypothetical protein AF1543 -
Archaeoglobus fulgidus >gi|2649029|gb|AAB89714.1|
(AE000996) A. fulgidus predicted coding region AF1543
[Archaeoglobus fulgidus]
Length = 271
Score = 124 bits (309), Expect = 1e-27
Identities = 87/276 (31%), Positives = 138/276 (49%), Gaps = 15/276 (5%)
Query: 9 VNIDRVIEYIEMRRHNDGGYCFVSQLADTNINDTYYAIKIYSLLGIEVPEKEKTIEFLYD 68
+++ R+ +++ R++ DGG+ F L T + +T+YA+ I + +G +VP +EK +EFL
Sbjct: 4 IDLKRLSDFVRHRQNEDGGFAFCKPLPST-LAETFYAVSILTSIGEDVPRREKVVEFL-- 60
Query: 69 SAQMQTATVGVAMAIEGLAILGAKDLAKEKMELLF-MKYNPLEDKFAVGLGG---SEEFG 124
+++QT + + L +LG +DL LL ++ E K+ + GG + F
Sbjct: 61 KSRIQTEINSLFYTLHSLNLLG-EDLPDYSSFLLKRLEGLKAERKYLLSDGGVTATYTFL 119
Query: 125 TATPLEATYWAMRAMNSVNYRIDEEMREKIIEFVRRFKIGDAYGVTHPTTTMTYQALYTL 184
L Y ++ N + EE + + + R + G YGV P T+ A Y L
Sbjct: 120 QPNALRDAYMISTLLHLYNRDVPEETKMLVRRYRRETEFGVGYGVKKPNLEETFYASYIL 179
Query: 185 NSLGIKEKTRHFELCEVCGDWGGFTEVPNSLPPYIEPTFYALRGLELLGKRAGCIDSHIK 244
+ + FE GGF + P PPY+E T+YA L LL +R + +
Sbjct: 180 RDKAVISFVKSFE------SNGGFAKQPGGYPPYLEDTYYATSTLSLLSQRYSNPRT-AE 232
Query: 245 FIRSLQNQNGGFRRSYELGISTFQNTYRALASLNIL 280
FI SLQN NGGFRRS GIST +++Y A+ L L
Sbjct: 233 FIASLQNANGGFRRSIHGGISTLEDSYYAVEVLRRL 268
>pir||H69201 hypothetical protein MTH762 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621851|gb|AAB85265.1| (AE000854)
unknown [Methanobacterium thermoautotrophicum]
Length = 256
Score = 85.4 bits (208), Expect = 7e-16
Identities = 83/274 (30%), Positives = 122/274 (44%), Gaps = 32/274 (11%)
Query: 14 VIEYIEMRRHNDGGYCFVSQLADTNINDTYYAIKIYSLLGIEVPEKEKTIEFLYDSAQMQ 73
VI ++ RRH+ GGY L D+ +TYYAI+ + +L E P E+T+++L D +
Sbjct: 11 VISFLNKRRHSSGGYTLYEGLPDSK--NTYYAIRSFEVLDHEPPRLEETLDWLEDVHRGG 68
Query: 74 T-ATVGVAMAIEGLAILGAKDLAKEKM-ELLFMKYNPLEDKFAVGLGGSEEFGTATPLEA 131
T A G+ L G EK E+L Y + LE
Sbjct: 69 TFAAQGLFYRCSILRDYGRNFEIPEKFTEMLRTSYRK------------------SSLEI 110
Query: 132 TYWAMRAMNSVNYRIDEEMREKIIEFVRRFKIGDA-YGVTHPTTTMTYQALYTLNSLGIK 190
T++ M+SV R+ E ++I E+V + D +G T AL LN G+K
Sbjct: 111 TFY----MDSV-LRMHGEYLDEIPEWVLSIQNEDGGFGAYGSDIINTRFALEILNGHGMK 165
Query: 191 -EKTRHFELCEVCGDWGGFTEVPNSLPPYIEPTFYALRGLELLGKRAGCIDSHIKFIRSL 249
+ + C G + P S PPYIE R E+L G + +FI +
Sbjct: 166 IPGDEVLQFTDSCFSDGAWNFTPISYPPYIETVHSGFRINEIL---RGKVSDVTRFIMKI 222
Query: 250 QNQNGGFRRSYELGISTFQNTYRALASLNILIRW 283
+N +GGFRRS +GIS + TYRA+ L + W
Sbjct: 223 RNPDGGFRRSVYMGISEPEYTYRAIYMLASIHGW 256
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.139 0.408
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105053568
Number of Sequences: 2977
Number of extensions: 4296976
Number of successful extensions: 10825
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10809
Number of HSP's gapped (non-prelim): 4
length of query: 284
length of database: 189,106,746
effective HSP length: 54
effective length of query: 230
effective length of database: 156,788,448
effective search space: 36061343040
effective search space used: 36061343040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)