BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0503 (PAB0503) DE:Hypothetical protein
         (114 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75117 hypothetical protein PAB0503 - Pyrococcus abyssi (st...   227  3e-59
pir||E71015 hypothetical protein PH1419 - Pyrococcus horikoshii ...   145  2e-34

>pir||B75117 hypothetical protein PAB0503 - Pyrococcus abyssi (strain Orsay)
           >gi|5458162|emb|CAB49651.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 114
           
 Score =  227 bits (572), Expect = 3e-59
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MGMMEIWISDEEFEAIKRNKEKALEFLNNGDKLRTYLLSLKFKFLMEKLNNLEERLQEVE 60
           MGMMEIWISDEEFEAIKRNKEKALEFLNNGDKLRTYLLSLKFKFLMEKLNNLEERLQEVE
Sbjct: 1   MGMMEIWISDEEFEAIKRNKEKALEFLNNGDKLRTYLLSLKFKFLMEKLNNLEERLQEVE 60

Query: 61  QEYRKLKAFESRAFEDKEFLLRIRRELSIENSNLRRKLNNESNLSKKSICEDYS 114
           QEYRKLKAFESRAFEDKEFLLRIRRELSIENSNLRRKLNNESNLSKKSICEDYS
Sbjct: 61  QEYRKLKAFESRAFEDKEFLLRIRRELSIENSNLRRKLNNESNLSKKSICEDYS 114


>pir||E71015 hypothetical protein PH1419 - Pyrococcus horikoshii
           >gi|3257842|dbj|BAA30525.1| (AP000006) 114aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 114
           
 Score =  145 bits (361), Expect = 2e-34
 Identities = 68/109 (62%), Positives = 87/109 (79%)

Query: 1   MGMMEIWISDEEFEAIKRNKEKALEFLNNGDKLRTYLLSLKFKFLMEKLNNLEERLQEVE 60
           MGMMEIW+ +EEF+AIKRN+EK L  LN+ +K + YLLSLKFKFL EKLN LE+RL ++ 
Sbjct: 1   MGMMEIWVDEEEFKAIKRNREKGLTLLNDEEKFKLYLLSLKFKFLREKLNKLEKRLADIT 60

Query: 61  QEYRKLKAFESRAFEDKEFLLRIRRELSIENSNLRRKLNNESNLSKKSI 109
           + Y KLK FE RA +DKEFL+ IR+ELS+ENSNLRR L +E N+ K+ +
Sbjct: 61  ESYAKLKNFERRAVKDKEFLMEIRQELSLENSNLRRTLKDEGNVQKEQV 109


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.134    0.353 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37288345
Number of Sequences: 2977
Number of extensions: 1350807
Number of successful extensions: 10881
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10879
Number of HSP's gapped (non-prelim): 2
length of query: 114
length of database: 189,106,746
effective HSP length: 59
effective length of query: 55
effective length of database: 153,796,013
effective search space: 8458780715
effective search space used: 8458780715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 159 (66.3 bits)