BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0504 (PAB0504) DE:Hypothetical protein
         (131 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75117 hypothetical protein PAB0504 - Pyrococcus abyssi (st...   261  3e-69
pir||D71015 hypothetical protein PH1418 - Pyrococcus horikoshii ...   189  9e-48
pir||F75043 hypothetical protein PAB1493 - Pyrococcus abyssi (st...    76  1e-13
pir||D71117 hypothetical protein PH0707 - Pyrococcus horikoshii ...    71  6e-12

>pir||C75117 hypothetical protein PAB0504 - Pyrococcus abyssi (strain Orsay)
           >gi|5458163|emb|CAB49652.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 131
           
 Score =  261 bits (659), Expect = 3e-69
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MKVTFRKSRFARITVEIPTNAVEVCEELGFSLEEVLKKLFLEGNFDFEIHSEEEVMQLEM 60
           MKVTFRKSRFARITVEIPTNAVEVCEELGFSLEEVLKKLFLEGNFDFEIHSEEEVMQLEM
Sbjct: 1   MKVTFRKSRFARITVEIPTNAVEVCEELGFSLEEVLKKLFLEGNFDFEIHSEEEVMQLEM 60

Query: 61  KIRDTERKLYELEGSWSSLKFKLFQVYSDNRNLAIQISGLVSENKRLRKFLNLPSRDFRD 120
           KIRDTERKLYELEGSWSSLKFKLFQVYSDNRNLAIQISGLVSENKRLRKFLNLPSRDFRD
Sbjct: 61  KIRDTERKLYELEGSWSSLKFKLFQVYSDNRNLAIQISGLVSENKRLRKFLNLPSRDFRD 120

Query: 121 VEELIRYYLNL 131
           VEELIRYYLNL
Sbjct: 121 VEELIRYYLNL 131


>pir||D71015 hypothetical protein PH1418 - Pyrococcus horikoshii
           >gi|3257841|dbj|BAA30524.1| (AP000006) 143aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 143
           
 Score =  189 bits (476), Expect = 9e-48
 Identities = 83/131 (63%), Positives = 116/131 (88%)

Query: 1   MKVTFRKSRFARITVEIPTNAVEVCEELGFSLEEVLKKLFLEGNFDFEIHSEEEVMQLEM 60
           MKVTF+K+RF ++T+E+P  A+++C ELGFS+EE+L+++F++GN +FE HSE+E+ +LE 
Sbjct: 1   MKVTFKKNRFTKVTIELPDYALKLCHELGFSVEEILREIFIKGNTEFEGHSEDEIKELEK 60

Query: 61  KIRDTERKLYELEGSWSSLKFKLFQVYSDNRNLAIQISGLVSENKRLRKFLNLPSRDFRD 120
           KI + E++LYELEGSWSSL+FKLFQ+ SDNRNLAIQISGL++EN+RLR+ LNLP R+F  
Sbjct: 61  KINEVEKRLYELEGSWSSLRFKLFQISSDNRNLAIQISGLIAENRRLRRMLNLPERNFEY 120

Query: 121 VEELIRYYLNL 131
           VEE+I+YYLN+
Sbjct: 121 VEEIIKYYLNI 131


>pir||F75043 hypothetical protein PAB1493 - Pyrococcus abyssi (strain Orsay)
           >gi|5458756|emb|CAB50243.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 137
           
 Score = 76.1 bits (184), Expect = 1e-13
 Identities = 41/120 (34%), Positives = 74/120 (61%), Gaps = 3/120 (2%)

Query: 12  RITVEIPTNAVEVCEELGFSLEEVLKKLFLEGNFDFEIHSEEEVMQLEMKIRDTERKLYE 71
           +++ EI    +E+  + G  +E +L+ L LE   DF+      +  LE +I + E+K++E
Sbjct: 19  KLSDEIEAKILELSNKFGVPVERILEILILE---DFKDPPAINIEDLEKEISELEKKVWE 75

Query: 72  LEGSWSSLKFKLFQVYSDNRNLAIQISGLVSENKRLRKFLNLPSRDFRDVEELIRYYLNL 131
           LE  ++ LKFK + +  +N+ LAI++SGL++EN +L++FL        ++ +LI YY+NL
Sbjct: 76  LEMEFAPLKFKAYNLTQENKLLAIELSGLLAENVQLKRFLKKKIDRNIELRKLITYYMNL 135


>pir||D71117 hypothetical protein PH0707 - Pyrococcus horikoshii
           >gi|3257115|dbj|BAA29798.1| (AP000003) 133aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 133
           
 Score = 70.6 bits (170), Expect = 6e-12
 Identities = 41/136 (30%), Positives = 79/136 (57%), Gaps = 8/136 (5%)

Query: 1   MKVTFRKSR-FARITVE----IPTNAVEVCEELGFSLEEVLKKLFLEGNFDFEIHSEEEV 55
           MKVT +  + F +IT E    I    +++ EE    +E +L+ +      +F+  S   +
Sbjct: 1   MKVTIKPDKGFGKITFELDDYIANEILKLGEEFKVPIERILQIIIFS---EFKKPSSSNI 57

Query: 56  MQLEMKIRDTERKLYELEGSWSSLKFKLFQVYSDNRNLAIQISGLVSENKRLRKFLNLPS 115
            + E +I+  E+K++ LE  ++ LKFK + V  +N+ LAI++SGL++EN +L++FL +  
Sbjct: 58  EKAEEEIKKLEKKVWNLEMEFAPLKFKAYNVTQENKLLAIEVSGLLAENVQLKRFLKMKI 117

Query: 116 RDFRDVEELIRYYLNL 131
               ++ ++I YY+ +
Sbjct: 118 DRNVELRKIISYYMGV 133


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.139    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45028453
Number of Sequences: 2977
Number of extensions: 1706341
Number of successful extensions: 6821
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6817
Number of HSP's gapped (non-prelim): 4
length of query: 131
length of database: 189,106,746
effective HSP length: 55
effective length of query: 76
effective length of database: 156,189,961
effective search space: 11870437036
effective search space used: 11870437036
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 160 (66.7 bits)