BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0508 701823 702128 102 !not a gene!
         (102 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71014 hypothetical protein PH1407 - Pyrococcus horikoshii ...   112  1e-24

>pir||A71014 hypothetical protein PH1407 - Pyrococcus horikoshii
           >gi|3257830|dbj|BAA30513.1| (AP000006) 117aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 117
           
 Score =  112 bits (277), Expect = 1e-24
 Identities = 57/88 (64%), Positives = 68/88 (76%)

Query: 15  NFSLPPSPVFNPEPVTTRTTLSPFSMNPSFTSLIKAGMTTADDNSAKIPSFASNLSPFSI 74
           NFSLPPSP+ +PEPVTT+TTLSPFS+ P  T L +AG+TTA+++SA IPS ASN SP  +
Sbjct: 3   NFSLPPSPILSPEPVTTKTTLSPFSIIPFSTRLNRAGITTAEESSANIPSLASNFSPVIM 62

Query: 75  SSSLTRTAVPLLSLMALITLGFIRGSLT 102
           S S T TAVP LS +ALITL FI G  T
Sbjct: 63  SFSFTTTAVPPLSFIALITLDFITGFFT 90


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.131    0.366 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34726141
Number of Sequences: 2977
Number of extensions: 1264453
Number of successful extensions: 8680
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8679
Number of HSP's gapped (non-prelim): 1
length of query: 102
length of database: 189,106,746
effective HSP length: 56
effective length of query: 46
effective length of database: 155,591,474
effective search space: 7157207804
effective search space used: 7157207804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 158 (66.0 bits)