BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0513 (PAB0513) DE:Hypothetical protein
(212 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75120 hypothetical protein PAB0513 - Pyrococcus abyssi (st... 409 e-113
sp|O50097|YD89_PYRHO HYPOTHETICAL PROTEIN PH1389 >gi|7519123|pir... 333 9e-91
sp|Q9X016|Y914_THEMA HYPOTHETICAL PROTEIN TM0914 >gi|7462107|pir... 138 6e-32
sp|O27724|YG89_METTH HYPOTHETICAL PROTEIN MTH1689 >gi|7482162|pi... 127 7e-29
pir||F81744 conserved hypothetical protein TC0063 [imported] - C... 86 3e-16
sp|O58371|Y637_PYRHO HYPOTHETICAL PROTEIN PH0637 >gi|7518756|pir... 80 1e-14
pir||F75051 hypothetical protein PAB0929 - Pyrococcus abyssi (st... 80 3e-14
gi|11499732 conserved hypothetical protein [Archaeoglobus fulgid... 77 1e-13
sp|O84697|Y691_CHLTR HYPOTHETICAL PROTEIN CT691 >gi|7468803|pir|... 76 2e-13
sp|Q9Z7M3|Y681_CHLPN HYPOTHETICAL PROTEIN CPN0681/CP0066 >gi|746... 74 1e-12
pir||C82996 conserved hypothetical protein PA5208 [imported] - P... 69 4e-11
>pir||A75120 hypothetical protein PAB0513 - Pyrococcus abyssi (strain Orsay)
>gi|5458185|emb|CAB49674.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 212
Score = 409 bits (1040), Expect = e-113
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MIGGKEKEVFNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELR 60
MIGGKEKEVFNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELR
Sbjct: 1 MIGGKEKEVFNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELR 60
Query: 61 RSIELMLYGGAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAKPNIPGDLESEILRLV 120
RSIELMLYGGAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAKPNIPGDLESEILRLV
Sbjct: 61 RSIELMLYGGAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAKPNIPGDLESEILRLV 120
Query: 121 DESLKTYTYLKEAVLALEESVEKALELSKETETQEERADKIEYDLLRKIFSRNDISTYAK 180
DESLKTYTYLKEAVLALEESVEKALELSKETETQEERADKIEYDLLRKIFSRNDISTYAK
Sbjct: 121 DESLKTYTYLKEAVLALEESVEKALELSKETETQEERADKIEYDLLRKIFSRNDISTYAK 180
Query: 181 LIWNQVITKVGDIADRAEDASDQVMLIAVKRR 212
LIWNQVITKVGDIADRAEDASDQVMLIAVKRR
Sbjct: 181 LIWNQVITKVGDIADRAEDASDQVMLIAVKRR 212
>sp|O50097|YD89_PYRHO HYPOTHETICAL PROTEIN PH1389 >gi|7519123|pir||G71011 hypothetical
protein PH1389 - Pyrococcus horikoshii
>gi|3257812|dbj|BAA30495.1| (AP000006) 212aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 212
Score = 333 bits (845), Expect = 9e-91
Identities = 166/212 (78%), Positives = 192/212 (90%)
Query: 1 MIGGKEKEVFNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELR 60
MIGGKEKEVF K+REHL AV++TL AFR+LF Y+ GD+++AE LL++VE +ES ADELR
Sbjct: 1 MIGGKEKEVFAKIREHLNAVESTLMAFRKLFEVYIRGDVERAEELLKDVEREESRADELR 60
Query: 61 RSIELMLYGGAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAKPNIPGDLESEILRLV 120
R+IELMLYGGAF+PASRGDY+RLSELIDNVADAAESAAH+LMFAKP +P LE EI+RLV
Sbjct: 61 RNIELMLYGGAFLPASRGDYVRLSELIDNVADAAESAAHSLMFAKPIVPKGLEDEIIRLV 120
Query: 121 DESLKTYTYLKEAVLALEESVEKALELSKETETQEERADKIEYDLLRKIFSRNDISTYAK 180
DESLKT+ YLK A LALE+SV+ AL L+K+TETQEE ADKIEYDLLRKIFSR DISTYAK
Sbjct: 121 DESLKTFEYLKGATLALEDSVDDALMLAKKTETQEEDADKIEYDLLRKIFSREDISTYAK 180
Query: 181 LIWNQVITKVGDIADRAEDASDQVMLIAVKRR 212
LIWNQVITK+GD+ADRAEDASDQ+MLIA+KRR
Sbjct: 181 LIWNQVITKIGDVADRAEDASDQIMLIAIKRR 212
>sp|Q9X016|Y914_THEMA HYPOTHETICAL PROTEIN TM0914 >gi|7462107|pir||A72320 conserved
hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981450|gb|AAD35995.1|AE001755_18 (AE001755)
conserved hypothetical protein [Thermotoga maritima]
Length = 213
Score = 138 bits (343), Expect = 6e-32
Identities = 82/210 (39%), Positives = 114/210 (54%), Gaps = 2/210 (0%)
Query: 3 GGKEKEVFNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELRRS 62
G KE+ + + +H++ V+ TL L YL D D E L + ES AD LRR
Sbjct: 5 GKKEQTIISLFFKHIDKVEETLKCVFDLIKKYLE-DTDDIESLYLRTQRLESEADRLRRK 63
Query: 63 IELMLYGGAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAKPNIPGDLESEILRLVDE 122
E+ +Y GAF+P RGD + L E +D VA+ AE A ++ KP +P +L+ IL ++
Sbjct: 64 TEMEMYSGAFLPNFRGDLLGLIESVDKVANKAEYVADLIVLQKPEVPHELKDLILSQMEY 123
Query: 123 SLKTYTYLKEAVLALEESVEKALELSKETETQEERADKIEYDLLRKIFSRNDISTYAKLI 182
SLK Y LK A+ L E +E+ E E E D +E LRK+F DI KL
Sbjct: 124 SLKAYESLKSALKFLFEDLERVEEFVLAVEKYEHDEDAVERTALRKLFEM-DIERSVKLE 182
Query: 183 WNQVITKVGDIADRAEDASDQVMLIAVKRR 212
++I +GDIADR ED SD+ +I +KRR
Sbjct: 183 VKELIRSIGDIADRTEDVSDRAEIILLKRR 212
>sp|O27724|YG89_METTH HYPOTHETICAL PROTEIN MTH1689 >gi|7482162|pir||G69092 conserved
hypothetical protein MTH1689 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622819|gb|AAB86161.1| (AE000926) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 217
Score = 127 bits (317), Expect = 7e-29
Identities = 79/211 (37%), Positives = 112/211 (52%), Gaps = 3/211 (1%)
Query: 5 KEKEVFNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELRRSIE 64
KE +V R+HLE V F +L A+ GD L +E+ KE ADE+RR +E
Sbjct: 6 KESKVEKHGRQHLEKVMECYLKFEELMEAFYRGDCRLVSELTKEIAIKEHEADEIRRKME 65
Query: 65 LMLYGGAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAKPNIPGDLESEILRLVDESL 124
L Y GAF+P R D I L E ID VAD ESAA T+ K P + + ++ +
Sbjct: 66 LEFYEGAFLPFDREDRIMLVESIDKVADVIESAAFTVSLGKVAFPAEFRDDFRAMMKVTG 125
Query: 125 KTYTYLKEAVLALEESVEKALELSKETETQEERADKIEYDLLRKIFS---RNDISTYAKL 181
KT L E V +LE + +A+ E E E+ AD IE ++ ++S ++ I L
Sbjct: 126 KTIRALHECVESLETDLGEAMRKVHEIERFEDEADIIERKIITGLYSAYRQDRIGVVKFL 185
Query: 182 IWNQVITKVGDIADRAEDASDQVMLIAVKRR 212
++ KV +I+DRAEDASD+ ++I KRR
Sbjct: 186 DMKEITRKVANISDRAEDASDRALIIIAKRR 216
>pir||F81744 conserved hypothetical protein TC0063 [imported] - Chlamydia
muridarum (strain Nigg) >gi|7190100|gb|AAF38948.1|
(AE002274) conserved hypothetical protein [Chlamydia
muridarum]
Length = 224
Score = 86.2 bits (210), Expect = 3e-16
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 10/205 (4%)
Query: 10 FNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELRRSIELMLYG 69
F+ L+ H+E V A++ LF A GD + E L + V KE AD ++ I L
Sbjct: 13 FSPLQAHVELVSASIEVLFPLFSAIKEGDYQRVEALAQLVSSKERQADGVKNDIRSHLAS 72
Query: 70 GAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAKPNIPGDLESEILRLVDESLKTYTY 129
G FIP SR + + D+VAD AE A L + + E + + ++++++
Sbjct: 73 GVFIPVSRLAMLEIISTQDSVADCAEDIAILLTVKELRFYPEFEEIFFQFLQKTVQSFEV 132
Query: 130 LKEAV----LALEES-----VEKALELSKETETQEERADKIEYDLLRKIFSRN-DISTYA 179
+ +A+ L LE S EK L E E D ++ +L++ +FS N I T
Sbjct: 133 VAKAIREMDLLLESSFGGCRAEKTRVLVNEVSNLEHECDLLQRELMKILFSENFSIETKD 192
Query: 180 KLIWNQVITKVGDIADRAEDASDQV 204
++W Q+I ++ I++ +E + +V
Sbjct: 193 FVLWTQIIKRLSGISNNSEKLAYRV 217
>sp|O58371|Y637_PYRHO HYPOTHETICAL PROTEIN PH0637 >gi|7518756|pir||F71108 hypothetical
protein PH0637 - Pyrococcus horikoshii
>gi|3257045|dbj|BAA29728.1| (AP000003) 226aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 226
Score = 80.4 bits (195), Expect = 1e-14
Identities = 50/215 (23%), Positives = 105/215 (48%), Gaps = 12/215 (5%)
Query: 7 KEVFNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELRRSIELM 66
K F L H E V T+ + ++ GD + + ++V+D E AD+++ +
Sbjct: 13 KSPFKPLIRHAEVVVQTVETLEKALDSWARGDYENMKEYAKKVDDLEDIADKIKSELRDS 72
Query: 67 LYGGAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAK--PNIPGDLESEILRLVDESL 124
+ +P R D + + D +ADAAE A L+ + +IP D++ IL++ ES+
Sbjct: 73 ITSKLLMPVQRTDILEYLHMQDKIADAAEDTAKWLLIKRNLDSIPNDIKDIILKMGKESI 132
Query: 125 KTYTYLKEAVLAL---------EESVEKALELSKETETQEERADKIEYDLLRKIFSRNDI 175
K + EA+ L E+ ++K ++ K+ E E + D ++ L+ +F+ +++
Sbjct: 133 KAAKLVYEAIKQLDNVLESGFAEKEIKKEYKIIKQIEEVESKIDGLDSKLMEIVFT-SEL 191
Query: 176 STYAKLIWNQVITKVGDIADRAEDASDQVMLIAVK 210
L + + +I+D+A+D ++++ ++ K
Sbjct: 192 DWKDGLYILNIARTLSNISDKAKDTAERIRVLMNK 226
>pir||F75051 hypothetical protein PAB0929 - Pyrococcus abyssi (strain Orsay)
>gi|5458820|emb|CAB50307.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 223
Score = 79.6 bits (193), Expect = 3e-14
Identities = 50/215 (23%), Positives = 104/215 (48%), Gaps = 12/215 (5%)
Query: 7 KEVFNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELRRSIELM 66
K F L H E V T+ + A+ G ++ + ++V+D E AD ++ +
Sbjct: 10 KSPFKPLIRHAEVVVQTVETLEKALDAWAQGKYEEMKDYAKKVDDLEDVADRIKSELRDS 69
Query: 67 LYGGAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAK--PNIPGDLESEILRLVDESL 124
+ +P R D + + D +ADAAE A L+ + +PG+++ I+++ ES+
Sbjct: 70 ITSKLLMPVQRTDILEYLHMQDKIADAAEDTAKWLLIREEPEAVPGEIKELIVKMGKESI 129
Query: 125 KTYTYLKEAVLAL---------EESVEKALELSKETETQEERADKIEYDLLRKIFSRNDI 175
K + EA+ L + +E+ E+ KE E E + D ++ L+ +F ++++
Sbjct: 130 KAAKLVYEAIKQLDVVLESGFADREIEREYEIIKEIEEVESKIDGLDSKLMELVF-KSEL 188
Query: 176 STYAKLIWNQVITKVGDIADRAEDASDQVMLIAVK 210
+ + + V I+D+A+DA++++ ++ K
Sbjct: 189 NWKDGMYILNIARTVSRISDKAKDAAERIRVLMNK 223
>gi|11499732 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7388530|sp|O28133|YL49_ARCFU HYPOTHETICAL PROTEIN
AF2149 >gi|7483214|pir||E69518 conserved hypothetical
protein AF2149 - Archaeoglobus fulgidus
>gi|2648381|gb|AAB89106.1| (AE000956) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 211
Score = 77.3 bits (187), Expect = 1e-13
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 12/211 (5%)
Query: 3 GGKEKEVFNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELRRS 62
G +E+EV + + +E + T + + E ++ +V + E D +RR
Sbjct: 12 GEREREVVELIGKQVELIIDTCELMKSIIER-------SDEAVVGDVCEAEKLGDAIRRD 64
Query: 63 IELMLYGGAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAKPNIPGDLESEILRLVDE 122
I L ++ GAFIPA R D+ L+E +D + D E A L IP +L E +R+ D
Sbjct: 65 IVLKIHSGAFIPALRSDFCNLAEELDEILDELEDIA-MLYLLIDFIPDELRDEFIRIADT 123
Query: 123 SLKTYTYLKEAVLALEESVEKALELSKETETQEERADKIEYDLLRKIFSRNDISTYAK-L 181
+ K L +A ALEE ++ + + EE+ D ++ + K+ D S YA+
Sbjct: 124 NSKMAYLLLDAFNALEEG--GLSDILLKIKILEEQIDSMKGRIYEKL-KNIDFSGYAEWY 180
Query: 182 IWNQVITKVGDIADRAEDASDQVMLIAVKRR 212
+ + + K+ +++D EDA D + +++V R
Sbjct: 181 YFIKFVEKLLNVSDLIEDAGDTIQVLSVSIR 211
>sp|O84697|Y691_CHLTR HYPOTHETICAL PROTEIN CT691 >gi|7468803|pir||G71483 hypothetical
protein CT691 - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329144|gb|AAC68286.1| (AE001339)
hypothetical protein [Chlamydia trachomatis]
Length = 224
Score = 76.5 bits (185), Expect = 2e-13
Identities = 49/207 (23%), Positives = 96/207 (45%), Gaps = 10/207 (4%)
Query: 10 FNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELRRSIELMLYG 69
F L+ HLE V +T++ LF A GD ++ L + V KE AD ++ + L
Sbjct: 13 FAPLQAHLELVSSTINVLFPLFSALKEGDYERVGVLAQLVSSKERQADGMKNDVRRHLAS 72
Query: 70 GAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAKPNIPGDLESEILRLVDESLKTYTY 129
G F+P SR + + + D++AD AE A L + + E + ++++++
Sbjct: 73 GVFLPVSRAALLEIISIQDSLADCAEDIAILLTVKELQFYPEFEELFFEFLQKTVQSFEA 132
Query: 130 LKEAVLALEESVE---------KALELSKETETQEERADKIEYDLLRKIFSRN-DISTYA 179
+ + + ++ +E K L E E D ++ +L++ FS + I T
Sbjct: 133 VAKTIREMDRLLESSFGGNRADKTRVLVSEVSNLEHECDLLQRELMKVFFSDDFAIGTKG 192
Query: 180 KLIWNQVITKVGDIADRAEDASDQVML 206
++W Q+I + I++ +E + +V +
Sbjct: 193 FVLWMQIIKGISGISNNSEKLAYRVSM 219
>sp|Q9Z7M3|Y681_CHLPN HYPOTHETICAL PROTEIN CPN0681/CP0066 >gi|7468172|pir||E72049
conserved hypothetical protein CP0066 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376982|gb|AAD18820.1| (AE001650) CT691 hypothetical
protein [Chlamydophila pneumoniae CWL029]
>gi|7189003|gb|AAF37955.1| (AE002170) conserved
hypothetical protein [Chlamydophila pneumoniae AR39]
>gi|8979053|dbj|BAA98888.1| (AP002547) CT691
hypothetical protein [Chlamydophila pneumoniae J138]
Length = 224
Score = 73.7 bits (178), Expect = 1e-12
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 10/205 (4%)
Query: 10 FNKLREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELRRSIELMLYG 69
F L+ HLE V + + +F A G ++ + + V DKE AD ++ + L
Sbjct: 13 FAPLQAHLEMVVSCVEYMLPIFTALRDGRYEELLEMAKLVSDKEYQADCIKNDMRNHLPA 72
Query: 70 GAFIPASRGDYIRLSELIDNVADAAESAAHTLMFAKPNIPGDLESEILRLVDESLK---- 125
G F+P SR + + + D++AD AE A L + N +E+ R ++++L+
Sbjct: 73 GLFMPISRAGILEIISIQDSIADTAEDVAILLTIRRLNFYPSMETLFFRFLEKNLEAFEL 132
Query: 126 TYTYLKEAVLALEES-----VEKALELSKETETQEERADKIEYDLLRKIFSRNDISTYAK 180
T T L E LE S +KA L E +D ++ +L++ FS + I +
Sbjct: 133 TMTLLHEFNQLLESSFGGRKADKARLLVGRVAKSEHESDVLQRELMQIFFSDDFIIPEKE 192
Query: 181 L-IWNQVITKVGDIADRAEDASDQV 204
+W QVI + I+D +E + ++
Sbjct: 193 FYLWLQVIRRTAGISDSSEKLAHRI 217
>pir||C82996 conserved hypothetical protein PA5208 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951514|gb|AAG08593.1|AE004933_9 (AE004933)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 225
Score = 69.1 bits (166), Expect = 4e-11
Identities = 45/202 (22%), Positives = 94/202 (46%), Gaps = 10/202 (4%)
Query: 13 LREHLEAVDATLSAFRQLFVAYLSGDLDKAERLLREVEDKESYADELRRSIELMLYGGAF 72
+++H+ + F A ++ D + E++ +++ E AD L++ + + L F
Sbjct: 18 MQQHIAKAHECAAGLLPFFRAVIAEDWAQVEQVQQDMVRLEQEADRLKKHVRMHLPKSLF 77
Query: 73 IPASRGDYIRLSELIDNVADAAESAAHTLMFAKPNIPGDLESEILRLVDESLKTYTYLKE 132
+P R D + L + D VA+ A+ A ++ + IP L+ ++L V S+
Sbjct: 78 LPVPRSDLLELLSVQDKVANRAKDIAGLMLGRRMRIPLPLQGQMLAYVQRSVDASAQALR 137
Query: 133 AVLALEESVEKAL---------ELSKETETQEERADKIEYDLLRKIFS-RNDISTYAKLI 182
V L E +E + +E E E D+I+ ++ R++F +++ +
Sbjct: 138 VVNELNELLETGFGGRETSLVESMVEELEAIENDTDRIQVEVRRELFRLESELPPVDVMF 197
Query: 183 WNQVITKVGDIADRAEDASDQV 204
Q+I +GD+ADRA+ +++
Sbjct: 198 LYQIIEWIGDVADRAQRVGNRL 219
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.133 0.351
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67554159
Number of Sequences: 2977
Number of extensions: 2544034
Number of successful extensions: 13827
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 13809
Number of HSP's gapped (non-prelim): 13
length of query: 212
length of database: 189,106,746
effective HSP length: 62
effective length of query: 150
effective length of database: 152,000,552
effective search space: 22800082800
effective search space used: 22800082800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)