BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0517 (PAB0517) DE:Hypothetical protein
         (138 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75120 hypothetical protein PAB0517 - Pyrococcus abyssi (st...   287  3e-77
pir||A71011 hypothetical protein PH1383 - Pyrococcus horikoshii ...   240  6e-63
gi|11499955 conserved hypothetical protein [Archaeoglobus fulgid...   115  3e-25
pir||D75078 hypothetical protein PAB1692 - Pyrococcus abyssi (st...   104  5e-22
pir||E71066 hypothetical protein PH1227 - Pyrococcus horikoshii ...   103  1e-21
pir||H71076 hypothetical protein PH0880 - Pyrococcus horikoshii ...    76  2e-13
pir||F69023 conserved hypothetical protein MTH1175 - Methanobact...    75  3e-13

>pir||F75120 hypothetical protein PAB0517 - Pyrococcus abyssi (strain Orsay)
           >gi|5458190|emb|CAB49679.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 138
           
 Score =  287 bits (728), Expect = 3e-77
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
           MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ
Sbjct: 1   MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60

Query: 61  FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG 120
           FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG
Sbjct: 61  FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG 120

Query: 121 GGRGRGMGMGRGRRWGGW 138
           GGRGRGMGMGRGRRWGGW
Sbjct: 121 GGRGRGMGMGRGRRWGGW 138


>pir||A71011 hypothetical protein PH1383 - Pyrococcus horikoshii
           >gi|3257806|dbj|BAA30489.1| (AP000006) 177aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 177
           
 Score =  240 bits (606), Expect = 6e-63
 Identities = 118/138 (85%), Positives = 125/138 (90%), Gaps = 1/138 (0%)

Query: 1   MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
           MR IVAT+ GGLDD VNQ+FGRTPTFTIVDVDENGNIVNVQVV NPGYSQPRGAGVT AQ
Sbjct: 41  MRLIVATVRGGLDDYVNQSFGRTPTFTIVDVDENGNIVNVQVVENPGYSQPRGAGVTTAQ 100

Query: 61  FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG 120
           FCIDQGADVVI+GQFGPNS GVLQAAG++ VSAPPTMTV+EA+EAYLRGELTQAIMGQGG
Sbjct: 101 FCIDQGADVVISGQFGPNSSGVLQAAGIRLVSAPPTMTVREAVEAYLRGELTQAIMGQGG 160

Query: 121 GGRGRGMGMGRGRRWGGW 138
            GRGRG G GR  R GGW
Sbjct: 161 MGRGRGRGRGRWMR-GGW 177


>gi|11499955 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7450449|pir||B69547 conserved hypothetical protein
           AF2378 - Archaeoglobus fulgidus
           >gi|2650717|gb|AAB91286.1| (AE001112) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 144
           
 Score =  115 bits (285), Expect = 3e-25
 Identities = 64/139 (46%), Positives = 85/139 (61%), Gaps = 5/139 (3%)

Query: 1   MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
           MR    T+ GG+DD V   FGRT TFTIVD D  G + NV+VV N   SQ  GAG+ AAQ
Sbjct: 1   MRIAATTLKGGIDDIVTPQFGRTATFTIVDYD--GGVKNVEVVENRAASQSSGAGIAAAQ 58

Query: 61  FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG 120
             +D+  +V++ G  GP +  VL+AAG++   A   + V++A+E  L+GEL +      G
Sbjct: 59  MLVDKKVEVLLTGHVGPKAMNVLRAAGIRAFVA-EGLRVRDAVEKLLKGELEEITAPSSG 117

Query: 121 GGR--GRGMGMGRGRRWGG 137
            G+  GRGMG GRGR  GG
Sbjct: 118 MGKGMGRGMGGGRGRGMGG 136


>pir||D75078 hypothetical protein PAB1692 - Pyrococcus abyssi (strain Orsay)
           >gi|5458441|emb|CAB49929.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 194
           
 Score =  104 bits (257), Expect = 5e-22
 Identities = 63/169 (37%), Positives = 81/169 (47%), Gaps = 32/169 (18%)

Query: 1   MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
           MR  V T  GGL+D V   F R P F IVDV ENG I NV+V+ NP  +   GAG  A Q
Sbjct: 1   MRIAVPTNGGGLEDTVAPVFARAPAFAIVDV-ENGEIKNVRVIQNPASTAAGGAGPMAVQ 59

Query: 61  FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQ------- 113
             I++G D ++A Q GPN+ G +QAAG+K  +  P   V++A+++ + G   Q       
Sbjct: 60  MLINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISGSAPQPQQYPQA 119

Query: 114 --------------------AIMGQGGGGRGRGMGMGRGRRWG----GW 138
                                     G G GRG G G GR WG    GW
Sbjct: 120 PVQVQPAPAVPTVYRPAYPPTYYWAPGWGWGRGWGRGWGRGWGRGGRGW 168


>pir||E71066 hypothetical protein PH1227 - Pyrococcus horikoshii
           >gi|3257644|dbj|BAA30327.1| (AP000005) 189aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 189
           
 Score =  103 bits (254), Expect = 1e-21
 Identities = 62/166 (37%), Positives = 82/166 (49%), Gaps = 31/166 (18%)

Query: 1   MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
           MR  V T  GGL+D V   F R P F IVDV ENG I NV+V+ N   +   GAG  A Q
Sbjct: 1   MRIAVPTNGGGLEDTVAPVFARAPAFAIVDV-ENGEIKNVRVIQNSASTAAGGAGPMAVQ 59

Query: 61  FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIM---- 116
             I++G D ++A Q GPN+ G +QAAG++  + PP   V++A+++ + G   Q       
Sbjct: 60  MLINEGVDTIVAPQVGPNAMGAIQAAGIRVYTVPPGTKVEDAVKSAISGSAPQTTAPIQV 119

Query: 117 -------------------------GQGGGGRGRGMGMGR-GRRWG 136
                                     +GG GRG G G GR GR WG
Sbjct: 120 QAPTPAVYTPAPAYPPRYYWAPRWGWRGGWGRGWGRGWGRGGRGWG 165


>pir||H71076 hypothetical protein PH0880 - Pyrococcus horikoshii
           >gi|3257291|dbj|BAA29974.1| (AP000004) 116aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 116
           
 Score = 76.1 bits (184), Expect = 2e-13
 Identities = 36/106 (33%), Positives = 64/106 (59%), Gaps = 1/106 (0%)

Query: 1   MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
           ++  + T  GGL+D+V+++  R  TFT+V+V ++G I  ++VV NP  ++P GAG   A 
Sbjct: 2   IKIAIPTSKGGLEDKVHESLVRAETFTLVEV-KDGKIERIEVVENPHKNEPYGAGSKVAI 60

Query: 61  FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAY 106
           F ++ G ++++     P    +L+A G+K +      +VKE IEA+
Sbjct: 61  FLVNNGVNILLTPMDCPKGKAILEAGGVKIIKVKQGKSVKEVIEAF 106


>pir||F69023 conserved hypothetical protein MTH1175 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622282|gb|AAB85664.1| (AE000886) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 124
           
 Score = 75.3 bits (182), Expect = 3e-13
 Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 12/134 (8%)

Query: 1   MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
           M+  +A+    L   V++ FGR P F IV++ + GNI + +V+ NP  S   GAG+  AQ
Sbjct: 1   MKIAIASSGTDLGSEVSRFFGRAPYFMIVEM-KKGNIESSEVIENPSASASGGAGIRTAQ 59

Query: 61  FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG 120
              + G   VIA   GPN++ VL   G+K   A  T +V+E ++ +  G L +       
Sbjct: 60  IIANNGVKAVIASSPGPNAFEVLNELGIKIYRATGT-SVEENLKLFTEGNLEEI------ 112

Query: 121 GGRGRGMGMGRGRR 134
               R  G GRGRR
Sbjct: 113 ----RSPGSGRGRR 122


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.430 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57690092
Number of Sequences: 2977
Number of extensions: 2559833
Number of successful extensions: 18016
Number of sequences better than 1.0e-10: 7
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17987
Number of HSP's gapped (non-prelim): 14
length of query: 138
length of database: 189,106,746
effective HSP length: 49
effective length of query: 89
effective length of database: 159,780,883
effective search space: 14220498587
effective search space used: 14220498587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)