BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0517 (PAB0517) DE:Hypothetical protein
(138 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75120 hypothetical protein PAB0517 - Pyrococcus abyssi (st... 287 3e-77
pir||A71011 hypothetical protein PH1383 - Pyrococcus horikoshii ... 240 6e-63
gi|11499955 conserved hypothetical protein [Archaeoglobus fulgid... 115 3e-25
pir||D75078 hypothetical protein PAB1692 - Pyrococcus abyssi (st... 104 5e-22
pir||E71066 hypothetical protein PH1227 - Pyrococcus horikoshii ... 103 1e-21
pir||H71076 hypothetical protein PH0880 - Pyrococcus horikoshii ... 76 2e-13
pir||F69023 conserved hypothetical protein MTH1175 - Methanobact... 75 3e-13
>pir||F75120 hypothetical protein PAB0517 - Pyrococcus abyssi (strain Orsay)
>gi|5458190|emb|CAB49679.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 138
Score = 287 bits (728), Expect = 3e-77
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ
Sbjct: 1 MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
Query: 61 FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG 120
FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG
Sbjct: 61 FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG 120
Query: 121 GGRGRGMGMGRGRRWGGW 138
GGRGRGMGMGRGRRWGGW
Sbjct: 121 GGRGRGMGMGRGRRWGGW 138
>pir||A71011 hypothetical protein PH1383 - Pyrococcus horikoshii
>gi|3257806|dbj|BAA30489.1| (AP000006) 177aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 177
Score = 240 bits (606), Expect = 6e-63
Identities = 118/138 (85%), Positives = 125/138 (90%), Gaps = 1/138 (0%)
Query: 1 MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
MR IVAT+ GGLDD VNQ+FGRTPTFTIVDVDENGNIVNVQVV NPGYSQPRGAGVT AQ
Sbjct: 41 MRLIVATVRGGLDDYVNQSFGRTPTFTIVDVDENGNIVNVQVVENPGYSQPRGAGVTTAQ 100
Query: 61 FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG 120
FCIDQGADVVI+GQFGPNS GVLQAAG++ VSAPPTMTV+EA+EAYLRGELTQAIMGQGG
Sbjct: 101 FCIDQGADVVISGQFGPNSSGVLQAAGIRLVSAPPTMTVREAVEAYLRGELTQAIMGQGG 160
Query: 121 GGRGRGMGMGRGRRWGGW 138
GRGRG G GR R GGW
Sbjct: 161 MGRGRGRGRGRWMR-GGW 177
>gi|11499955 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450449|pir||B69547 conserved hypothetical protein
AF2378 - Archaeoglobus fulgidus
>gi|2650717|gb|AAB91286.1| (AE001112) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 144
Score = 115 bits (285), Expect = 3e-25
Identities = 64/139 (46%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 1 MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
MR T+ GG+DD V FGRT TFTIVD D G + NV+VV N SQ GAG+ AAQ
Sbjct: 1 MRIAATTLKGGIDDIVTPQFGRTATFTIVDYD--GGVKNVEVVENRAASQSSGAGIAAAQ 58
Query: 61 FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG 120
+D+ +V++ G GP + VL+AAG++ A + V++A+E L+GEL + G
Sbjct: 59 MLVDKKVEVLLTGHVGPKAMNVLRAAGIRAFVA-EGLRVRDAVEKLLKGELEEITAPSSG 117
Query: 121 GGR--GRGMGMGRGRRWGG 137
G+ GRGMG GRGR GG
Sbjct: 118 MGKGMGRGMGGGRGRGMGG 136
>pir||D75078 hypothetical protein PAB1692 - Pyrococcus abyssi (strain Orsay)
>gi|5458441|emb|CAB49929.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 194
Score = 104 bits (257), Expect = 5e-22
Identities = 63/169 (37%), Positives = 81/169 (47%), Gaps = 32/169 (18%)
Query: 1 MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
MR V T GGL+D V F R P F IVDV ENG I NV+V+ NP + GAG A Q
Sbjct: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDV-ENGEIKNVRVIQNPASTAAGGAGPMAVQ 59
Query: 61 FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQ------- 113
I++G D ++A Q GPN+ G +QAAG+K + P V++A+++ + G Q
Sbjct: 60 MLINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISGSAPQPQQYPQA 119
Query: 114 --------------------AIMGQGGGGRGRGMGMGRGRRWG----GW 138
G G GRG G G GR WG GW
Sbjct: 120 PVQVQPAPAVPTVYRPAYPPTYYWAPGWGWGRGWGRGWGRGWGRGGRGW 168
>pir||E71066 hypothetical protein PH1227 - Pyrococcus horikoshii
>gi|3257644|dbj|BAA30327.1| (AP000005) 189aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 189
Score = 103 bits (254), Expect = 1e-21
Identities = 62/166 (37%), Positives = 82/166 (49%), Gaps = 31/166 (18%)
Query: 1 MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
MR V T GGL+D V F R P F IVDV ENG I NV+V+ N + GAG A Q
Sbjct: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDV-ENGEIKNVRVIQNSASTAAGGAGPMAVQ 59
Query: 61 FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIM---- 116
I++G D ++A Q GPN+ G +QAAG++ + PP V++A+++ + G Q
Sbjct: 60 MLINEGVDTIVAPQVGPNAMGAIQAAGIRVYTVPPGTKVEDAVKSAISGSAPQTTAPIQV 119
Query: 117 -------------------------GQGGGGRGRGMGMGR-GRRWG 136
+GG GRG G G GR GR WG
Sbjct: 120 QAPTPAVYTPAPAYPPRYYWAPRWGWRGGWGRGWGRGWGRGGRGWG 165
>pir||H71076 hypothetical protein PH0880 - Pyrococcus horikoshii
>gi|3257291|dbj|BAA29974.1| (AP000004) 116aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 116
Score = 76.1 bits (184), Expect = 2e-13
Identities = 36/106 (33%), Positives = 64/106 (59%), Gaps = 1/106 (0%)
Query: 1 MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
++ + T GGL+D+V+++ R TFT+V+V ++G I ++VV NP ++P GAG A
Sbjct: 2 IKIAIPTSKGGLEDKVHESLVRAETFTLVEV-KDGKIERIEVVENPHKNEPYGAGSKVAI 60
Query: 61 FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAY 106
F ++ G ++++ P +L+A G+K + +VKE IEA+
Sbjct: 61 FLVNNGVNILLTPMDCPKGKAILEAGGVKIIKVKQGKSVKEVIEAF 106
>pir||F69023 conserved hypothetical protein MTH1175 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622282|gb|AAB85664.1| (AE000886) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 124
Score = 75.3 bits (182), Expect = 3e-13
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 12/134 (8%)
Query: 1 MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
M+ +A+ L V++ FGR P F IV++ + GNI + +V+ NP S GAG+ AQ
Sbjct: 1 MKIAIASSGTDLGSEVSRFFGRAPYFMIVEM-KKGNIESSEVIENPSASASGGAGIRTAQ 59
Query: 61 FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQAIMGQGG 120
+ G VIA GPN++ VL G+K A T +V+E ++ + G L +
Sbjct: 60 IIANNGVKAVIASSPGPNAFEVLNELGIKIYRATGT-SVEENLKLFTEGNLEEI------ 112
Query: 121 GGRGRGMGMGRGRR 134
R G GRGRR
Sbjct: 113 ----RSPGSGRGRR 122
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.430
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57690092
Number of Sequences: 2977
Number of extensions: 2559833
Number of successful extensions: 18016
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17987
Number of HSP's gapped (non-prelim): 14
length of query: 138
length of database: 189,106,746
effective HSP length: 49
effective length of query: 89
effective length of database: 159,780,883
effective search space: 14220498587
effective search space used: 14220498587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)