BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0518 (PAB0518) DE:Hypothetical protein
(272 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75120 hypothetical protein PAB0518 - Pyrococcus abyssi (st... 559 e-158
pir||H71010 hypothetical protein PH1382 - Pyrococcus horikoshii ... 427 e-119
pir||B71076 hypothetical protein PH0874 - Pyrococcus horikoshii ... 189 2e-47
sp|Q57749|Y301_METJA HYPOTHETICAL PROTEIN MJ0301 >gi|2128224|pir... 171 6e-42
sp|Q57890|Y448_METJA HYPOTHETICAL PROTEIN MJ0448 >gi|2128328|pir... 119 4e-26
pir||E69013 conserved hypothetical protein MTH1101 - Methanobact... 115 8e-25
pir||E72226 conserved hypothetical protein - Thermotoga maritima... 104 9e-22
>pir||G75120 hypothetical protein PAB0518 - Pyrococcus abyssi (strain Orsay)
>gi|5458191|emb|CAB49680.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 272
Score = 559 bits (1426), Expect = e-158
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MGRMVVKVTIVFENHAGYRKGLIGYHGFSALVESNGYKVLVDTGTDGKVLLNNMHELGID 60
MGRMVVKVTIVFENHAGYRKGLIGYHGFSALVESNGYKVLVDTGTDGKVLLNNMHELGID
Sbjct: 1 MGRMVVKVTIVFENHAGYRKGLIGYHGFSALVESNGYKVLVDTGTDGKVLLNNMHELGID 60
Query: 61 ANDIDVLFITHGHYDHTGGLKEFLKERSEPIEVYAHPGIFDERIALKPRKRDIGIPFQRK 120
ANDIDVLFITHGHYDHTGGLKEFLKERSEPIEVYAHPGIFDERIALKPRKRDIGIPFQRK
Sbjct: 61 ANDIDVLFITHGHYDHTGGLKEFLKERSEPIEVYAHPGIFDERIALKPRKRDIGIPFQRK 120
Query: 121 ELEELGARFNLSPEPLEFLPGFISSGEIKRVTWDRAVGYFPDGRKDPVRDDMALIVEGSK 180
ELEELGARFNLSPEPLEFLPGFISSGEIKRVTWDRAVGYFPDGRKDPVRDDMALIVEGSK
Sbjct: 121 ELEELGARFNLSPEPLEFLPGFISSGEIKRVTWDRAVGYFPDGRKDPVRDDMALIVEGSK 180
Query: 181 GLVVISGCGHSGIINIARHAMELRGSKIAALIGGFHLRGAKKELLDDVVTNMKELGVNAL 240
GLVVISGCGHSGIINIARHAMELRGSKIAALIGGFHLRGAKKELLDDVVTNMKELGVNAL
Sbjct: 181 GLVVISGCGHSGIINIARHAMELRGSKIAALIGGFHLRGAKKELLDDVVTNMKELGVNAL 240
Query: 241 YPGHCTGIEEFSYLWSKLDNVEGIYVGKEIKI 272
YPGHCTGIEEFSYLWSKLDNVEGIYVGKEIKI
Sbjct: 241 YPGHCTGIEEFSYLWSKLDNVEGIYVGKEIKI 272
>pir||H71010 hypothetical protein PH1382 - Pyrococcus horikoshii
>gi|3257805|dbj|BAA30488.1| (AP000006) 274aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 274
Score = 427 bits (1086), Expect = e-119
Identities = 200/269 (74%), Positives = 232/269 (85%)
Query: 4 MVVKVTIVFENHAGYRKGLIGYHGFSALVESNGYKVLVDTGTDGKVLLNNMHELGIDAND 63
MV+K+TIVFENHAGYRKGLIGYHGFSALVE+NGY+VLVDTGTDGKVLLNNM ELGI +D
Sbjct: 6 MVMKITIVFENHAGYRKGLIGYHGFSALVEANGYRVLVDTGTDGKVLLNNMSELGISPDD 65
Query: 64 IDVLFITHGHYDHTGGLKEFLKERSEPIEVYAHPGIFDERIALKPRKRDIGIPFQRKELE 123
ID LFITHGHYDHTGGL+E L R+E +++YAHPGIF R+ALKP+KR+IGIPF R+ELE
Sbjct: 66 IDALFITHGHYDHTGGLRELLSARTEALDIYAHPGIFKRRLALKPKKREIGIPFTREELE 125
Query: 124 ELGARFNLSPEPLEFLPGFISSGEIKRVTWDRAVGYFPDGRKDPVRDDMALIVEGSKGLV 183
ELG +F LS + E LPGFISSGEI+R+TWDRAVGYFPDG KDPVRDDMALIVE V
Sbjct: 126 ELGGKFILSDKSKEILPGFISSGEIERITWDRAVGYFPDGSKDPVRDDMALIVEEGSKSV 185
Query: 184 VISGCGHSGIINIARHAMELRGSKIAALIGGFHLRGAKKELLDDVVTNMKELGVNALYPG 243
VI+GCGHSGIINIA H+ +L ++IAALIGGFHL+G ++ LLD+ V ++EL + LYPG
Sbjct: 186 VITGCGHSGIINIAIHSKKLTNNRIAALIGGFHLKGIERSLLDEAVKKLRELEIEKLYPG 245
Query: 244 HCTGIEEFSYLWSKLDNVEGIYVGKEIKI 272
HCTGIEEF+YLWSK NVEGI+VGKEIKI
Sbjct: 246 HCTGIEEFAYLWSKFGNVEGIHVGKEIKI 274
>pir||B71076 hypothetical protein PH0874 - Pyrococcus horikoshii
>gi|3257285|dbj|BAA29968.1| (AP000004) 280aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 280
Score = 189 bits (476), Expect = 2e-47
Identities = 106/279 (37%), Positives = 168/279 (59%), Gaps = 10/279 (3%)
Query: 4 MVVKVTIVFENHAGYRKGLIGYHGFSALVESNGYKVLVDTGTDGKVLLNNMHELGIDAND 63
M VK+ + +++AGY HG S LVE G K+L DT + + +L NM L ++ D
Sbjct: 1 MRVKIYTLADDYAGYNSPFWAQHGVSFLVEVEGKKILFDTASYAEPILFNMKLLNLNPRD 60
Query: 64 IDVLFITHGHYDHTGGLKEFLKERSEPIEVYAHPGIFDERIALKPRKRDIGIPFQRKELE 123
ID++ ++H H+DHTGGL L+E + + ++AHP IF AL+P G P ++E E
Sbjct: 61 IDMIVLSHNHFDHTGGLLGILREINRKVPIFAHPEIFKVSFALEPEFMYAGTPRLKEEAE 120
Query: 124 ELGARFNLSPEPLEFLPGFISSGEIK---RVTWDR-AVGYF--PDGR--KDPVRDDMALI 175
+LG + L+ +P+ +PG + GEIK +V +++ + G F DGR +D V D++ L
Sbjct: 121 KLGGIWILTRDPITLMPGVFTLGEIKEEEKVEFEKGSTGLFKIEDGRVIEDKVEDEIGLA 180
Query: 176 VEGSKGLVVISGCGHSGIINIARHAMELRGS-KIAALIGGFHLRGAKKELLDDVVTNMKE 234
+ KGLVV++GC H GI+++ + A++L G+ K+ A++GGFHL A+ ++ V KE
Sbjct: 181 INTRKGLVVLAGCAHPGIVSMVKKAIKLSGNDKVYAVLGGFHLINAEDSRIEKTVEAFKE 240
Query: 235 LGVNALYPGHCTGIEEFSYLWSKL-DNVEGIYVGKEIKI 272
L V +Y GHCTG++ S +L D E ++ GK I+I
Sbjct: 241 LEVKKVYAGHCTGLKAESRFAQELGDRFEKLHSGKIIEI 279
>sp|Q57749|Y301_METJA HYPOTHETICAL PROTEIN MJ0301 >gi|2128224|pir||F64337 hypothetical
protein MJ0301 - Methanococcus jannaschii
>gi|1591024|gb|AAB98288.1| (U67485) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 294
Score = 171 bits (430), Expect = 6e-42
Identities = 99/283 (34%), Positives = 167/283 (58%), Gaps = 17/283 (6%)
Query: 6 VKVTIVFENHAGYRKGLIGYHGFSAL--VESNGYK--VLVDTGTDGKVLLNNMHELGIDA 61
+K+ + E++AGY HG S L VESNG K +L DT T + +L NM L I+
Sbjct: 11 IKIYTLAEDYAGYNSPFWSQHGLSFLIEVESNGIKKRILFDTATYAEPILFNMKLLNINP 70
Query: 62 NDIDVLFITHGHYDHTGGLKEFLKERSEPIEVYAHPGIFDERIALKPRKRDIGI--PFQR 119
ID++ ++H H+DHTGGL +KE ++ I ++AHP IF A +P G +
Sbjct: 71 KSIDMIILSHNHFDHTGGLFGIMKEINKEIPIFAHPNIFKVSFATEPEFMLAGTLNKTLK 130
Query: 120 KELEELGARFNLSPEPLEFLPGFISSGEI---KRVTWDR--AVGYF--PDGR--KDPVRD 170
+++E+LG R+ LS +P+ +PG + GEI +++ +++ +G + +GR D V D
Sbjct: 131 EDIEKLGGRWVLSRDPIRLMPGIFTLGEIEDEEKINFEKKPTIGLYKLENGRVVLDNVED 190
Query: 171 DMALIVEGSKGLVVISGCGHSGIINIARHAMELRG-SKIAALIGGFHLRGAKKELLDDVV 229
++ L + KGL+++SGC H GI+++ + ++++ G +K+ A+IGGFHL A E + +
Sbjct: 191 EIGLAIVTEKGLIIVSGCSHPGIVSMVKKSIKISGINKVYAVIGGFHLIDADNERIVSTI 250
Query: 230 TNMKELGVNALYPGHCTGIE-EFSYLWSKLDNVEGIYVGKEIK 271
+K+LGV + GHCTG + E ++ ++ E ++ GK IK
Sbjct: 251 KALKKLGVKKICTGHCTGFKAENMFMEEFKEDFERLHAGKIIK 293
>sp|Q57890|Y448_METJA HYPOTHETICAL PROTEIN MJ0448 >gi|2128328|pir||H64355 hypothetical
protein MJ0448 - Methanococcus jannaschii
>gi|1591152|gb|AAB98437.1| (U67496) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 256
Score = 119 bits (295), Expect = 4e-26
Identities = 94/270 (34%), Positives = 138/270 (50%), Gaps = 20/270 (7%)
Query: 8 VTIVFENHAGYRKGLIGYHGFSALVESNGYKVLVDTGTDGKVLLNNMHELGIDANDIDVL 67
+ I+ +N A Y+K HGFSAL+E N ++L D G + L N+ L + D +
Sbjct: 2 IKILVDNTA-YKK-FFAQHGFSALIEINNKRILFDAGQNSITLRENLR-LFNEKEGFDYI 58
Query: 68 FITHGHYDHTGGLKEFLKERSEPIEVYAHPGIFDERIALKPRKRDIGIPFQRKELEELGA 127
++HGHYDH GLK ++ +V AH F ++ A R IGI + KE A
Sbjct: 59 VLSHGHYDHCDGLKYVIENDLINGKVIAHKDAFLDKYA---GNRYIGIDEEIKEYLLKKA 115
Query: 128 RFNLSPEPLEFLPGFISSGEIKRVTWDRAVGYF---PDGR--KDPVRDDMALIVEGSKGL 182
+ EP + I SG + R ++ + F DG+ KD V DDM LI +G
Sbjct: 116 DLEIIEEPYKIDKDIIVSGYVPR-EYEYEMEEFQCIKDGKRVKDEVNDDMFLIAKG---- 170
Query: 183 VVISGCGHSGIINIARHAMELRGSKIAALIGGFHLRGAKKELLDDVVTNMKELGVNALYP 242
++I+GC HSGIIN+ + +L S+I ++GGFHL G L+ +V K + P
Sbjct: 171 ILITGCSHSGIINVVEYGKKL--SEIKGVLGGFHLVGVSDNYLNRIVDYFKSQDF-WIMP 227
Query: 243 GHCTGIEEFSYLWSKLDNVEGIYVGKEIKI 272
HCTG + + L S+L+N +VGK I I
Sbjct: 228 MHCTGFKALTKL-SQLNNFVYGHVGKIIGI 256
>pir||E69013 conserved hypothetical protein MTH1101 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622202|gb|AAB85590.1| (AE000880) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 260
Score = 115 bits (284), Expect = 8e-25
Identities = 89/275 (32%), Positives = 133/275 (48%), Gaps = 24/275 (8%)
Query: 6 VKVTIVFENHAGYRKGLIGYHGFSALVESNGYKVLVDTGTDGKVLLNNMHELGIDANDID 65
+K+T + E+ A R L HG S +E + +L DTG G + + N LG+D D+D
Sbjct: 1 MKITCLVEDRA--RPPLRAEHGLSLHIEGD-VNILFDTGQSG-LFMENAELLGVDLGDVD 56
Query: 66 VLFITHGHYDHTGGLKEFLKERSEPIEVYAHPGIFDERIALKP-RKRDIGIPFQRKELEE 124
+ ++HGHYDH GGL F+ E +E EV G F R A++ +R IGI
Sbjct: 57 LAILSHGHYDHGGGLTHFM-EINENTEVLTGEGAFRGRWAVEDGAERFIGIEEITDPRIR 115
Query: 125 LGARFNLSPEPLEFLPGFISSGEIKRVTWDR------AVGYFPDGRKDPVRDDMALIVEG 178
L + E L GF SG +R +R A G P D D++ L+++G
Sbjct: 116 LIDEDTVIHEGYTILKGF--SGPFRRPLGNRTLFMESAQGLVP----DTFDDELVLVIDG 169
Query: 179 SKGLVVISGCGHSGIINIARHAME-LRGSKIAALIGGFHLRGAKKELLDDVVTNMKELGV 237
GL V++GC H+GI+NI + +I ++GG H+ G V + ++E V
Sbjct: 170 QGGLTVVTGCSHNGILNILGTVRDHFPDREIGTVVGGLHISGDALY----VASEIQEFEV 225
Query: 238 NALYPGHCTGIEEFSYLWSKLDNVEGIYVGKEIKI 272
+Y GHCT E F L + NV + G I++
Sbjct: 226 GKIYTGHCTSEEAFKVL-GRSCNVNVLRTGTVIEV 259
>pir||E72226 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982254|gb|AAD36746.1|AE001808_21 (AE001808)
conserved hypothetical protein [Thermotoga maritima]
Length = 255
Score = 104 bits (258), Expect = 9e-22
Identities = 84/239 (35%), Positives = 115/239 (47%), Gaps = 33/239 (13%)
Query: 19 RKGLIGYHGFSALVESNGYKVLVDTGTDGKVLLNNMHELGIDANDIDVLFITHGHYDHTG 78
+ G HGFS LV+S VL DTG V L N +LGID DVL I+HGHYDH G
Sbjct: 12 QNGFESEHGFSVLVDS----VLFDTGKSD-VFLKNARKLGIDLPK-DVL-ISHGHYDHAG 64
Query: 79 GLKEFLKERSEPIEVYAHPGIFDERIA---------LKPRKRDIGIPFQRKELEELGAR- 128
GL +R V+ D++ + + K++ G F + + E+G
Sbjct: 65 GLLYLSGKR-----VWLRKEALDQKYSGERYAGADWNEVLKKNTG-KFVIERITEIGKNM 118
Query: 129 FNLSPEPLEFLPGFISSGEIKRVTWDRAVGYFPDGRKDPVRDDMALIVEGSKGLVVISGC 188
F L P L G++ T D V + RKD D+ L+V +GLVVI+GC
Sbjct: 119 FLLGPANLR--------GKVP--TGDFFVERNGERRKDLFEDEQTLVVRTKEGLVVITGC 168
Query: 189 GHSGIINIARHAMELRGSKIAALIGGFHLRGAKKELLDDVVTNMKELGVNALYPGHCTG 247
H GI NI E +I ++GGFHL + + ++ +V ELGV + P HCTG
Sbjct: 169 SHRGIDNILLDIAETFNERIKMVVGGFHLLKSSDDEIEKIVKAFNELGVETVVPCHCTG 227
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.144 0.428
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110873869
Number of Sequences: 2977
Number of extensions: 5052239
Number of successful extensions: 10026
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10010
Number of HSP's gapped (non-prelim): 8
length of query: 272
length of database: 189,106,746
effective HSP length: 52
effective length of query: 220
effective length of database: 157,985,422
effective search space: 34756792840
effective search space used: 34756792840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)