BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0520 (PAB0520) DE:Hypothetical protein
         (136 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75121 hypothetical protein PAB0520 - Pyrococcus abyssi (st...   277  4e-74
gi|11499937 conserved hypothetical protein [Archaeoglobus fulgid...   119  1e-26
gb|AAK43178.1| Conserved hypothetical protein [Sulfolobus solfat...   103  1e-21
pir||A75199 hypothetical protein PAB2271 - Pyrococcus abyssi (st...    85  3e-16
gb|AAK41708.1| Conserved hypothetical protein [Sulfolobus solfat...    82  3e-15

>pir||D75121 hypothetical protein PAB0520 - Pyrococcus abyssi (strain Orsay)
           >gi|5458196|emb|CAB49685.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 136
           
 Score =  277 bits (701), Expect = 4e-74
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MHAVIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKS 60
           MHAVIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKS
Sbjct: 1   MHAVIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKS 60

Query: 61  MLMEYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEK 120
           MLMEYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEK
Sbjct: 61  MLMEYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEK 120

Query: 121 LRKLATKHGIRVLPEI 136
           LRKLATKHGIRVLPEI
Sbjct: 121 LRKLATKHGIRVLPEI 136


>gi|11499937 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483248|pir||H69544 conserved hypothetical protein
           AF2360 - Archaeoglobus fulgidus
           >gi|2650736|gb|AAB91304.1| (AE001113) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 134
           
 Score =  119 bits (296), Expect = 1e-26
 Identities = 57/134 (42%), Positives = 85/134 (62%)

Query: 1   MHAVIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKS 60
           M AVIDT++++YDTFED  FH+EA  LLD +  W +PTIV+ EY+W  K     + + K 
Sbjct: 1   MKAVIDTNVIVYDTFEDSVFHQEAMQLLDRIDVWVIPTIVIHEYVWVLKSLKVDVKEIKY 60

Query: 61  MLMEYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEK 120
            + EY+   + K + E+ ++++ AL+ +    LSLS +ND +IL  A   K  LATFDE+
Sbjct: 61  KVEEYLNHYKTKMVSENKQIVLSALERIVGGGLSLSRYNDELILAVAGREKISLATFDER 120

Query: 121 LRKLATKHGIRVLP 134
           LR+ A   G+ V+P
Sbjct: 121 LRRQARARGVEVIP 134


>gb|AAK43178.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 134
           
 Score =  103 bits (254), Expect = 1e-21
 Identities = 49/131 (37%), Positives = 79/131 (59%), Gaps = 2/131 (1%)

Query: 3   AVIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKSML 62
           A++DT+++IYD  ED E+H+ A  LLDSL +W +P IV+ E +WF K     L D    +
Sbjct: 4   AIVDTNVIIYDYVEDSEYHKRAEELLDSLDRWVIPVIVVHEIMWFLK--GMKLEDKVDDV 61

Query: 63  MEYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEKLR 122
           + Y+R  + + + +  + +  A+ +L + +L L  + D +IL  A   K PLATFD KL 
Sbjct: 62  LAYIRSEKAEVVCDCTDNVTDAIGVLNKEKLPLVSYKDMVILSHAIREKLPLATFDRKLS 121

Query: 123 KLATKHGIRVL 133
           K+A K+ + +L
Sbjct: 122 KIAKKYSVSLL 132


>pir||A75199 hypothetical protein PAB2271 - Pyrococcus abyssi (strain Orsay)
           >gi|5457549|emb|CAB49040.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 128
           
 Score = 85.0 bits (207), Expect = 3e-16
 Identities = 48/131 (36%), Positives = 73/131 (55%), Gaps = 5/131 (3%)

Query: 4   VIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKSMLM 63
           VIDT++ IY    D EF+  AR LL SL +W VP+IVL E  WFF+   +   +  +++ 
Sbjct: 3   VIDTNVFIYAILRDSEFNSRARNLLASLERWIVPSIVLYELYWFFREEGYGRDEITNVIS 62

Query: 64  EYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEKLRK 123
             +  PR + +G++      AL++ +        FND IIL  A   K  LAT+D++L+K
Sbjct: 63  SILNSPRTRVIGDNGRYTKRALELTKNPR----RFNDMIILATAEQFK-RLATYDKRLKK 117

Query: 124 LATKHGIRVLP 134
            A + GI  +P
Sbjct: 118 EAERLGIETMP 128


>gb|AAK41708.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 148
           
 Score = 81.9 bits (199), Expect = 3e-15
 Identities = 53/131 (40%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 4   VIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKSMLM 63
           V+DT++LIY T ED EFH ++  +++  S   VP IV+ EYI        +L   K+ + 
Sbjct: 22  VVDTNVLIYATLEDSEFHTQSLEIIEG-SDIIVPQIVVFEYIKVLSEIVQNLDFIKTKIS 80

Query: 64  EYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEKLRK 123
           E      F  + E    I  AL++L E +LSL   ND IIL  A      +ATFD+KLRK
Sbjct: 81  EL---NNFVVVCEDLNTIALALRLLAELKLSLKDINDMIILTAAIKTNSSIATFDQKLRK 137

Query: 124 LATKHGIRVLP 134
           +A K G++VLP
Sbjct: 138 IADKKGVKVLP 148


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.141    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48436998
Number of Sequences: 2977
Number of extensions: 1804286
Number of successful extensions: 6307
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6302
Number of HSP's gapped (non-prelim): 5
length of query: 136
length of database: 189,106,746
effective HSP length: 51
effective length of query: 85
effective length of database: 158,583,909
effective search space: 13479632265
effective search space used: 13479632265
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)