BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0520 (PAB0520) DE:Hypothetical protein
(136 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75121 hypothetical protein PAB0520 - Pyrococcus abyssi (st... 277 4e-74
gi|11499937 conserved hypothetical protein [Archaeoglobus fulgid... 119 1e-26
gb|AAK43178.1| Conserved hypothetical protein [Sulfolobus solfat... 103 1e-21
pir||A75199 hypothetical protein PAB2271 - Pyrococcus abyssi (st... 85 3e-16
gb|AAK41708.1| Conserved hypothetical protein [Sulfolobus solfat... 82 3e-15
>pir||D75121 hypothetical protein PAB0520 - Pyrococcus abyssi (strain Orsay)
>gi|5458196|emb|CAB49685.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 136
Score = 277 bits (701), Expect = 4e-74
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MHAVIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKS 60
MHAVIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKS
Sbjct: 1 MHAVIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKS 60
Query: 61 MLMEYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEK 120
MLMEYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEK
Sbjct: 61 MLMEYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEK 120
Query: 121 LRKLATKHGIRVLPEI 136
LRKLATKHGIRVLPEI
Sbjct: 121 LRKLATKHGIRVLPEI 136
>gi|11499937 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483248|pir||H69544 conserved hypothetical protein
AF2360 - Archaeoglobus fulgidus
>gi|2650736|gb|AAB91304.1| (AE001113) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 134
Score = 119 bits (296), Expect = 1e-26
Identities = 57/134 (42%), Positives = 85/134 (62%)
Query: 1 MHAVIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKS 60
M AVIDT++++YDTFED FH+EA LLD + W +PTIV+ EY+W K + + K
Sbjct: 1 MKAVIDTNVIVYDTFEDSVFHQEAMQLLDRIDVWVIPTIVIHEYVWVLKSLKVDVKEIKY 60
Query: 61 MLMEYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEK 120
+ EY+ + K + E+ ++++ AL+ + LSLS +ND +IL A K LATFDE+
Sbjct: 61 KVEEYLNHYKTKMVSENKQIVLSALERIVGGGLSLSRYNDELILAVAGREKISLATFDER 120
Query: 121 LRKLATKHGIRVLP 134
LR+ A G+ V+P
Sbjct: 121 LRRQARARGVEVIP 134
>gb|AAK43178.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 134
Score = 103 bits (254), Expect = 1e-21
Identities = 49/131 (37%), Positives = 79/131 (59%), Gaps = 2/131 (1%)
Query: 3 AVIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKSML 62
A++DT+++IYD ED E+H+ A LLDSL +W +P IV+ E +WF K L D +
Sbjct: 4 AIVDTNVIIYDYVEDSEYHKRAEELLDSLDRWVIPVIVVHEIMWFLK--GMKLEDKVDDV 61
Query: 63 MEYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEKLR 122
+ Y+R + + + + + + A+ +L + +L L + D +IL A K PLATFD KL
Sbjct: 62 LAYIRSEKAEVVCDCTDNVTDAIGVLNKEKLPLVSYKDMVILSHAIREKLPLATFDRKLS 121
Query: 123 KLATKHGIRVL 133
K+A K+ + +L
Sbjct: 122 KIAKKYSVSLL 132
>pir||A75199 hypothetical protein PAB2271 - Pyrococcus abyssi (strain Orsay)
>gi|5457549|emb|CAB49040.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 128
Score = 85.0 bits (207), Expect = 3e-16
Identities = 48/131 (36%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 4 VIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKSMLM 63
VIDT++ IY D EF+ AR LL SL +W VP+IVL E WFF+ + + +++
Sbjct: 3 VIDTNVFIYAILRDSEFNSRARNLLASLERWIVPSIVLYELYWFFREEGYGRDEITNVIS 62
Query: 64 EYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEKLRK 123
+ PR + +G++ AL++ + FND IIL A K LAT+D++L+K
Sbjct: 63 SILNSPRTRVIGDNGRYTKRALELTKNPR----RFNDMIILATAEQFK-RLATYDKRLKK 117
Query: 124 LATKHGIRVLP 134
A + GI +P
Sbjct: 118 EAERLGIETMP 128
>gb|AAK41708.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 148
Score = 81.9 bits (199), Expect = 3e-15
Identities = 53/131 (40%), Positives = 74/131 (56%), Gaps = 4/131 (3%)
Query: 4 VIDTDILIYDTFEDLEFHEEARALLDSLSKWYVPTIVLQEYIWFFKRNNFSLLDAKSMLM 63
V+DT++LIY T ED EFH ++ +++ S VP IV+ EYI +L K+ +
Sbjct: 22 VVDTNVLIYATLEDSEFHTQSLEIIEG-SDIIVPQIVVFEYIKVLSEIVQNLDFIKTKIS 80
Query: 64 EYVRDPRFKGLGESHEVIIHALKILEENELSLSHFNDAIILYQAFSRKYPLATFDEKLRK 123
E F + E I AL++L E +LSL ND IIL A +ATFD+KLRK
Sbjct: 81 EL---NNFVVVCEDLNTIALALRLLAELKLSLKDINDMIILTAAIKTNSSIATFDQKLRK 137
Query: 124 LATKHGIRVLP 134
+A K G++VLP
Sbjct: 138 IADKKGVKVLP 148
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.141 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48436998
Number of Sequences: 2977
Number of extensions: 1804286
Number of successful extensions: 6307
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6302
Number of HSP's gapped (non-prelim): 5
length of query: 136
length of database: 189,106,746
effective HSP length: 51
effective length of query: 85
effective length of database: 158,583,909
effective search space: 13479632265
effective search space used: 13479632265
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)