BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0521 (PAB0521) DE:Hypothetical protein
         (107 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75121 hypothetical protein PAB0521 - Pyrococcus abyssi (st...   226  7e-59
pir||B71010 hypothetical protein PH1376 - Pyrococcus horikoshii ...   200  4e-51

>pir||E75121 hypothetical protein PAB0521 - Pyrococcus abyssi (strain Orsay)
           >gi|5458197|emb|CAB49686.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 107
           
 Score =  226 bits (570), Expect = 7e-59
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MNPENKLMLIAYAIFTIAGIISGLLSAYAPLGWIVGWGIYVITPKLLIAIVNDLPEELKD 60
           MNPENKLMLIAYAIFTIAGIISGLLSAYAPLGWIVGWGIYVITPKLLIAIVNDLPEELKD
Sbjct: 1   MNPENKLMLIAYAIFTIAGIISGLLSAYAPLGWIVGWGIYVITPKLLIAIVNDLPEELKD 60

Query: 61  ERVLLKKTFWSFFFFWLYFTGMTYTVVTNYQPVSYYNGTLYYNISKG 107
           ERVLLKKTFWSFFFFWLYFTGMTYTVVTNYQPVSYYNGTLYYNISKG
Sbjct: 61  ERVLLKKTFWSFFFFWLYFTGMTYTVVTNYQPVSYYNGTLYYNISKG 107


>pir||B71010 hypothetical protein PH1376 - Pyrococcus horikoshii
           >gi|3257799|dbj|BAA30482.1| (AP000006) 107aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 107
           
 Score =  200 bits (504), Expect = 4e-51
 Identities = 90/107 (84%), Positives = 100/107 (93%)

Query: 1   MNPENKLMLIAYAIFTIAGIISGLLSAYAPLGWIVGWGIYVITPKLLIAIVNDLPEELKD 60
           MNPENK+MLIAY IFTIAGIISGLLS YAPLGWI+GW IYVI+PKLLIA+V +LPEELK+
Sbjct: 1   MNPENKMMLIAYGIFTIAGIISGLLSVYAPLGWIIGWAIYVISPKLLIALVPELPEELKN 60

Query: 61  ERVLLKKTFWSFFFFWLYFTGMTYTVVTNYQPVSYYNGTLYYNISKG 107
           E+V+LKKTFWSFFFFWLYFTGMTYTV+ NYQ V YYNGTLYYN+SKG
Sbjct: 61  EKVILKKTFWSFFFFWLYFTGMTYTVIINYQAVPYYNGTLYYNVSKG 107


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.144    0.462 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43679212
Number of Sequences: 2977
Number of extensions: 1725593
Number of successful extensions: 6484
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6478
Number of HSP's gapped (non-prelim): 2
length of query: 107
length of database: 189,106,746
effective HSP length: 45
effective length of query: 62
effective length of database: 162,174,831
effective search space: 10054839522
effective search space used: 10054839522
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 160 (66.7 bits)