BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0523 (PAB0523) DE:NUCLEOLAR PROTEIN
(311 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75121 nucleolar protein PAB0523 - Pyrococcus abyssi (strai... 633 0.0
pir||H71009 probable proliferating-cell nucleolar protein p120 -... 578 e-164
gi|11499621 proliferating-cell nucleolar antigen P120, putative ... 279 2e-74
gb|AAK40591.1| Proliferating-cell nucleolar antigen p120 homolog... 213 3e-54
pir||C72748 probable sun protein APE0514 - Aeropyrum pernix (str... 211 8e-54
pir||A48998 nucleolar protein p120 - mouse (fragment) 211 1e-53
pir||B75183 probable proliferating-cell nucleolar antigen p120 P... 209 3e-53
pir||G71030 probable nucleolar protein - Pyrococcus horikoshii >... 208 5e-53
gb|AAA36398.1| (M32110) proliferating cell nuclear protein P120 ... 207 2e-52
gi|11436286 nucleolar protein 1 (120kD) [Homo sapiens] 207 2e-52
gi|5453792 nucleolar protein 1 (120kD) [Homo sapiens] >gi|117174... 207 2e-52
gi|11498459 proliferating-cell nucleolar antigen P120, putative ... 201 7e-51
pir||T40814 probable nucleolar protein-NOL1-NOP2-sun family - fi... 197 2e-49
dbj|BAB08657.1| (AB026659) nucleolar protein-like [Arabidopsis t... 197 2e-49
sp|Q60343|Y026_METJA HYPOTHETICAL PROTEIN MJ0026 >gi|2127710|pir... 196 2e-49
gb|AAF58504.1| (AE003822) CG8545 gene product [Drosophila melano... 190 1e-47
pir||T33803 hypothetical protein W07E6.1 - Caenorhabditis elegan... 189 3e-47
gi|6324268 90-kDa protein, located in nucleolus, that is homolog... 189 4e-47
emb|CAA58502.1| (X83512) Yna1p [Saccharomyces cerevisiae] 189 4e-47
pir||C64945 probable rRNA methylase yebU - Escherichia coli >gi|... 187 1e-46
sp|P76273|YEBU_ECOLI HYPOTHETICAL 53.2 KD PROTEIN IN PRC-PRPA IN... 187 1e-46
pir||D75033 probable proliferating-cell nucleolar antigen p120 P... 185 7e-46
pir||G71135 probable fmu protein - Pyrococcus horikoshii >gi|325... 183 3e-45
pir||A82193 Sun/nucleolar protein family protein VC1502 [importe... 178 7e-44
pir||T08926 hypothetical protein T15N24.50 - Arabidopsis thalian... 174 1e-42
pir||G75137 sun protein (fmu protein) PAB2390 - Pyrococcus abyss... 157 1e-37
pir||A75030 probable proliferating-cell nucleolar antigen p120 P... 156 4e-37
pir||C71102 probable fmu protein - Pyrococcus horikoshii >gi|325... 155 6e-37
pir||G71215 probable nucleolar protein - Pyrococcus horikoshii >... 154 1e-36
gb|AAG19031.1| (AE005002) proliferating-cell nucleolar antigen; ... 149 3e-35
dbj|BAB06226.1| (AP001515) unknown conserved protein [Bacillus h... 146 2e-34
pir||A72478 probable fmu protein APE2465 - Aeropyrum pernix (str... 146 2e-34
sp|P72943|SUN_SYNY3 SUN PROTEIN (FMU PROTEIN) >gi|7429453|pir||S... 144 2e-33
sp|P94464|SUN_BACSU SUN PROTEIN >gi|7429452|pir||E69878 RNA-bind... 143 2e-33
pir||B81093 fmu and fmv protein, probable NMB1351 [imported] - N... 139 3e-32
pir||F81848 SUN-family protein NMA1563 [imported] - Neisseria me... 139 5e-32
gb|AAF14354.1|AF113138_1 (AF113138) nucleolar protein Nop2 [Erem... 138 7e-32
pir||G82372 sun protein VC0044 [imported] - Vibrio cholerae (gro... 137 2e-31
sp|P44788|SUN_HAEIN SUN PROTEIN (FMU PROTEIN) >gi|1074459|pir||F... 136 3e-31
pir||C81412 NOL1/NOP2/sun family protein Cj0636 [imported] - Cam... 134 1e-30
gi|11499905 fmu and fmv protein [Archaeoglobus fulgidus] >gi|744... 134 2e-30
pir||A72245 sun protein - Thermotoga maritima (strain MSB8) >gi|... 130 3e-29
sp|P45679|SUN_COXBU SUN PROTEIN (FMU PROTEIN) 129 6e-29
dbj|BAB01410.1| (AP000375) contains similarity to SUN and FMU pr... 129 6e-29
pir||F83643 conserved hypothetical protein PA0017 [imported] - P... 125 5e-28
dbj|BAA31227.1| (D86411) Fmv [Vibrio alginolyticus] 123 2e-27
pir||I40649 hypothetical protein 265 - Coxiella burnetii >gi|511... 123 3e-27
sp|P36929|SUN_ECOLI SUN PROTEIN (FMU PROTEIN) >gi|7445095|pir||D... 119 4e-26
emb|CAA21831.1| (AL033125) 1-evidence=predicted by content~1-met... 116 2e-25
gb|AAF45921.1| (AE003430) EG:EG0007.9 gene product [Drosophila m... 116 2e-25
gb|AAA58086.1| (U18997) we have one ORF, ECFMT has fmu and fmv [... 116 4e-25
emb|CAA10711.1| (AJ132604) sunL protein [Lactococcus lactis] 113 4e-24
pir||B81236 16S RNA methyltransferase NMB0112 [imported] - Neiss... 112 5e-24
pir||A82744 conserved hypothetical protein XF0928 [imported] - X... 111 1e-23
gb|AAD22359.1|AC006592_16 (AC006592) unknown protein [Arabidopsi... 110 2e-23
pir||G82009 SUN homolog NMA0162 [imported] - Neisseria meningiti... 109 4e-23
gi|8922322 hypothetical protein FLJ10267 [Homo sapiens] >gi|7022... 109 5e-23
emb|CAA54370.1| (X77091) fmv [Escherichia coli] 107 2e-22
pir||C72710 probable fmu protein APE1098 - Aeropyrum pernix (str... 107 2e-22
pir||T38272 probable NOL1-NOP2-sun family nucleolar protein - fi... 107 2e-22
gb|AAF51875.1| (AE003599) CG11109 gene product [Drosophila melan... 106 3e-22
gi|6319447 Probable proliferating-cell nucleolar antigen (human ... 105 8e-22
gi|11419358 hypothetical protein FLJ10267 [Homo sapiens] 103 3e-21
gb|AAK40701.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus] 102 7e-21
emb|CAC05734.1| (AL391744) putative methyltransferase possibily ... 100 3e-20
gb|AAF73608.1| (AE002350) Nol1/Nop2/Sun family protein [Chlamydi... 97 2e-19
gb|AAK40477.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus] 95 9e-19
pir||A71500 probable RNA methyltransferase - Chlamydia trachomat... 91 2e-17
gb|AAF51412.1| (AE003587) CG4749 gene product [Drosophila melano... 87 2e-16
gi|11545785 hypothetical protein FLJ22609 [Homo sapiens] >gi|104... 87 3e-16
emb|CAB70100.1| (AL132949) contains similarity to Pfam domain: P... 86 6e-16
emb|CAB70101.1| (AL132949) contains similarity to Pfam domain: P... 86 6e-16
pir||F75306 probable sun protein - Deinococcus radiodurans (stra... 85 1e-15
sp|P71675|YE07_MYCTU HYPOTHETICAL 48.5 KDA PROTEIN RV1407 >gi|74... 85 1e-15
pir||F72048 RNA methyltransferase - Chlamydophila pneumoniae (st... 82 9e-15
emb|CAB76894.1| (AL159139) hypothetical protein SCL6.29c [Strept... 80 3e-14
dbj|BAB13875.1| (AK021688) unnamed protein product [Homo sapiens] 76 5e-13
gb|AAF55642.1| (AE003725) CG5558 gene product [alt 1] [Drosophil... 74 3e-12
pir||T38517 hypothetical protein SPAC2C4.06c - fission yeast (S... 72 1e-11
gb|AAF55643.1| (AE003725) CG5558 gene product [alt 2] [Drosophil... 72 1e-11
gi|11416925 hypothetical protein FLJ20303 [Homo sapiens] 71 2e-11
pir||T06106 hypothetical protein T5J17.170 - Arabidopsis thalian... 69 5e-11
>pir||G75121 nucleolar protein PAB0523 - Pyrococcus abyssi (strain Orsay)
>gi|5458199|emb|CAB49688.1| (AJ248285) NUCLEOLAR PROTEIN
[Pyrococcus abyssi]
Length = 311
Score = 633 bits (1616), Expect = 0.0
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MAILEKLLTLGYSKPFAERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLN 60
MAILEKLLTLGYSKPFAERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLN
Sbjct: 1 MAILEKLLTLGYSKPFAERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLN 60
Query: 61 KKGFQFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVAD 120
KKGFQFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVAD
Sbjct: 61 KKGFQFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVAD 120
Query: 121 MAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQL 180
MAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQL
Sbjct: 121 MAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQL 180
Query: 181 GIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVY 240
GIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVY
Sbjct: 181 GIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVY 240
Query: 241 STCSLEPEENEFVIQWVLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGT 300
STCSLEPEENEFVIQWVLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGT
Sbjct: 241 STCSLEPEENEFVIQWVLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGT 300
Query: 301 SGFFVAKIRKL 311
SGFFVAKIRKL
Sbjct: 301 SGFFVAKIRKL 311
>pir||H71009 probable proliferating-cell nucleolar protein p120 - Pyrococcus
horikoshii >gi|3257797|dbj|BAA30480.1| (AP000006) 315aa
long hypothetical proliferating-cell nucleolar protein
p120 [Pyrococcus horikoshii]
Length = 315
Score = 578 bits (1475), Expect = e-164
Identities = 276/310 (89%), Positives = 299/310 (96%)
Query: 2 AILEKLLTLGYSKPFAERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNK 61
++L+KLL LGYSK FA+RY+QLWGERA+RIA+AMEKPLPRCFR+NTLKISVQ+LVKRLNK
Sbjct: 6 SMLDKLLRLGYSKLFADRYFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNK 65
Query: 62 KGFQFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADM 121
KGFQF+RVPWA+EGFCLTREPFSITSTPE+LTGLIYIQEASSMYPPVALDPKPGEIVADM
Sbjct: 66 KGFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADM 125
Query: 122 AAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLG 181
AAAPGGKTSYLAQLM N GVIYAFDVDE+RL+ETR+NLSRLGVLNVILFHSSSL+I +L
Sbjct: 126 AAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELN 185
Query: 182 IEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYS 241
+EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQM+L+EK LEVLKPGGILVYS
Sbjct: 186 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 245
Query: 242 TCSLEPEENEFVIQWVLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTS 301
TCSLEPEENEFVIQW L+NFDVELLPLKYGEPALT PFGIELS+EIK ARRLYPDVH TS
Sbjct: 246 TCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETS 305
Query: 302 GFFVAKIRKL 311
GFF+AKIRKL
Sbjct: 306 GFFIAKIRKL 315
>gi|11499621 proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
fulgidus] >gi|7445096|pir||F69504 proliferating-cell
nucleolar antigen P120-like protein - Archaeoglobus
fulgidus >gi|2648496|gb|AAB89215.1| (AE000962)
proliferating-cell nucleolar antigen P120, putative
[Archaeoglobus fulgidus]
Length = 324
Score = 279 bits (707), Expect = 2e-74
Identities = 139/309 (44%), Positives = 205/309 (65%), Gaps = 8/309 (2%)
Query: 5 EKLLTLGYSKPFAERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGF 64
E + GY + R+ +G+ I +A E+ +P+ RINTLKI + L++RL +GF
Sbjct: 14 ELAVKYGYDEFIVRRWLHFFGDETEDIIRAFEEGIPKYIRINTLKIDEKGLLERLESRGF 73
Query: 65 QFRR--VPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMA 122
+ ++ VP+ E + EP+SI +TPEYL G Y+ + SS PP+AL+PKPGE+V D+A
Sbjct: 74 KLKKTEVPYCFE---VVEEPYSIGATPEYLMGYYYVMDKSSCIPPLALEPKPGEVVVDLA 130
Query: 123 AAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGI 182
A+PGGKT++L+ LMENKG + A + ++RL+ N++R+G +NV + + + +GI
Sbjct: 131 ASPGGKTTFLSMLMENKGAVIAVEPQKERLQPLIDNINRMGAMNVAVINVDGRRVPAMGI 190
Query: 183 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYST 242
+ D++LLDAPCTG G IHK+P RK +R +DI FC LQ +LV A + LK GG++VYST
Sbjct: 191 KADRVLLDAPCTGEGIIHKDPSRKTDRGKEDILFCSSLQRELVLAAFDCLKEGGVMVYST 250
Query: 243 CSLEPEENEFVIQWVLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSG 302
CSL PEENEFV+ ++LE + +++G+ AL P + +E+ KARR YP H SG
Sbjct: 251 CSLTPEENEFVVDFLLERRKGVVEEIEWGDEALALP---GVKNEVSKARRFYPHRHQCSG 307
Query: 303 FFVAKIRKL 311
FFVA+IRK+
Sbjct: 308 FFVARIRKV 316
>gb|AAK40591.1| Proliferating-cell nucleolar antigen p120 homolog [Sulfolobus
solfataricus]
Length = 339
Score = 213 bits (536), Expect = 3e-54
Identities = 115/301 (38%), Positives = 178/301 (58%), Gaps = 9/301 (2%)
Query: 18 ERYYQLWG--ERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREG 75
ERY ++ E + PL + R NTLK + L + + +KGF +V W + G
Sbjct: 39 ERYLNMFSTEEELEEYLNSCSFPLKKSIRCNTLKTDCKKLEEIMLEKGFVLEKVKWLQHG 98
Query: 76 FCLTREPF--SITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLA 133
+ + R P S+ ST EYL G +IQ +SM P L+P + V DMAAAPGGKT+ L+
Sbjct: 99 YVVKRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSYDDFVLDMAAAPGGKTTQLS 158
Query: 134 QLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLG-IEFDKILLDAP 192
Q+M+NKG++ A + R++ N++RLG NV+L + +L + + +FDKILLDAP
Sbjct: 159 QIMQNKGLVIAVEKKRSRIRALLSNVNRLGAENVVLIKTDALNLININKSQFDKILLDAP 218
Query: 193 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEF 252
C+G G I K+P R++ TMDD++ LQ+ L+E A E+LK GG +VYSTCS+ PEE+E
Sbjct: 219 CSGEGLIQKDPTRRYKTTMDDLRDFAHLQLSLIEIAYELLKKGGYIVYSTCSVAPEEDEL 278
Query: 253 VIQWVLENFDVELLPLKYGEPA---LTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIR 309
++ + +E ++ + ++ G PA + S+++K R +P GT GFF+ ++
Sbjct: 279 IVNFAIEELGMKAMSVE-GYPASNGYIEYYTTRFSNDVKNCLRFFPHKQGTEGFFLCLLK 337
Query: 310 K 310
K
Sbjct: 338 K 338
>pir||C72748 probable sun protein APE0514 - Aeropyrum pernix (strain K1)
>gi|5104163|dbj|BAA79479.1| (AP000059) 352aa long
hypothetical sun protein [Aeropyrum pernix]
Length = 352
Score = 211 bits (532), Expect = 8e-54
Identities = 109/306 (35%), Positives = 174/306 (56%), Gaps = 6/306 (1%)
Query: 11 GYSKPFAERYYQLWGERALRIAQAM-EKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRV 69
GYS E+Y Q+ GE R A +KPLP R N I L L++KGF R+
Sbjct: 45 GYSPVLVEKYIQILGEEEARELIAWNDKPLPETIRCNDFLIPCSELESMLSQKGFLVSRI 104
Query: 70 PWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKT 129
PW G + +P + +T EY+ GL YIQ+ SM L +PGE V DMAAAPGGK+
Sbjct: 105 PWLPHGIEVLEQPIRVGATHEYMQGLYYIQDPGSMLVAYLLGVEPGETVLDMAAAPGGKS 164
Query: 130 SYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIE--FDKI 187
+++ QL + ++ A D+ R++ R ++ R+G + + + S + ++ D++
Sbjct: 165 THIQQLSRDSTILVAVDISRRRMRALRSHMQRMGFRSYVAVRADSRLLPRIAGTGWADRV 224
Query: 188 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEP 247
+LDAP TG G I K+PER+ +R+ D+ LQ++L+ A+++ +PG ++Y+ CS P
Sbjct: 225 MLDAPSTGEGIIRKDPERRRSRSQADVLRIHYLQLELLYTAVDLARPGAPILYAACSTSP 284
Query: 248 EENEFVIQWVLE---NFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFF 304
EE E V+ +LE + +VE L G P + G+++S E ++ RL+P HGT GFF
Sbjct: 285 EEGELVVSRLLELRSDVEVERLESPVGSPGVDSYLGVDISGEARRCLRLWPQRHGTEGFF 344
Query: 305 VAKIRK 310
+ ++R+
Sbjct: 345 ICRVRR 350
>pir||A48998 nucleolar protein p120 - mouse (fragment)
Length = 783
Score = 211 bits (531), Expect = 1e-53
Identities = 119/289 (41%), Positives = 165/289 (56%), Gaps = 7/289 (2%)
Query: 29 LRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRV-PWAREGFCLTREPFSITS 87
+ +A E P P R NTLK ++L + L +G + W++ G + I +
Sbjct: 244 IEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKSGLVVYDSSVPIGA 303
Query: 88 TPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDV 147
TPEYL G +Q ASSM P +AL P+ E + DM APGGKTSY+AQLM+N GVI A D
Sbjct: 304 TPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDA 363
Query: 148 DEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKW 207
+ DRLK NL RLGV N I+ H ++ FD++LLDAPC+G+G I K+P K
Sbjct: 364 NADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKT 423
Query: 208 NRTMDDIKFCQGLQMKLVEKALEVL----KPGGILVYSTCSLEPEENEFVIQWVLENFDV 263
N+ DI+ C LQ +L+ A++ + K GG LVY TCS+ EENE+V+ + L+ +V
Sbjct: 424 NKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVYCTCSITVEENEWVVDYALKKRNV 483
Query: 264 ELLP--LKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
L+P L +G+ TR ++ RR YP H GFF+AK +K
Sbjct: 484 RLVPTGLDFGQEGFTRFQARRFHPTLRSTRRFYPHTHNMDGFFIAKFKK 532
>pir||B75183 probable proliferating-cell nucleolar antigen p120 PAB1947 -
Pyrococcus abyssi (strain Orsay)
>gi|5458055|emb|CAB49545.1| (AJ248284)
proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi]
Length = 311
Score = 209 bits (527), Expect = 3e-53
Identities = 124/303 (40%), Positives = 177/303 (57%), Gaps = 9/303 (2%)
Query: 13 SKPFAERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWA 72
+K ERY +L + + + KPL RINTLK +++ +K L ++ F+ +PW
Sbjct: 11 NKKLVERYSKL--DDSEEFWAYLYKPLRPSIRINTLKGNLKE-IKALLEEKFELEPIPWT 67
Query: 73 R-EGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSY 131
+ EGF + + EY GLI QEASSM PPV LDPKP E++ DMAAAPG KT+
Sbjct: 68 KGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQ 127
Query: 132 LAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDA 191
+AQ MEN+G I A D DR NL+R GVL + Y + FD++LLDA
Sbjct: 128 MAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDA 187
Query: 192 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENE 251
PC+ G I KN + ++ + + LQ +L+ A + LKPGG+LVYSTC+++P ENE
Sbjct: 188 PCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENE 247
Query: 252 FVIQWVLENFDVEL----LPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAK 307
V+ ++L+ D +L LPLK EP + G + SDE++K R++P + T F++AK
Sbjct: 248 EVVDFLLQKTDAKLEKVKLPLKTSEPVIEWE-GRKYSDEVRKTIRIHPQDNDTEAFYIAK 306
Query: 308 IRK 310
IRK
Sbjct: 307 IRK 309
>pir||G71030 probable nucleolar protein - Pyrococcus horikoshii
>gi|3257964|dbj|BAA30647.1| (AP000006) 312aa long
hypothetical nucleolar protein [Pyrococcus horikoshii]
Length = 312
Score = 208 bits (525), Expect = 5e-53
Identities = 122/279 (43%), Positives = 165/279 (58%), Gaps = 7/279 (2%)
Query: 37 KPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAR-EGFCLTREPFSITSTPEYLTGL 95
KPL RINTLK + N +K+L ++ F+ R+PW + EGF + + EY GL
Sbjct: 33 KPLRPSIRINTLKGKL-NEIKKLLEEKFELERIPWTKGEGFYINSYSVNYGELIEYSLGL 91
Query: 96 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKET 155
I QEASSM PPV LDPKPGE++ DMAAAPG KT+ +AQ MEN G I A D DR
Sbjct: 92 IIPQEASSMIPPVVLDPKPGELILDMAAAPGSKTTQIAQYMENDGCIIANDAKRDRANIL 151
Query: 156 RINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIK 215
NL+R GVL + + + FD+ILLDAPC+ G I KN + ++ +
Sbjct: 152 IANLTRAGVLIAKVTVRDGAHYAKYEDTFDRILLDAPCSSVGMIRKNFKFAKTWSLGKVY 211
Query: 216 FCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLENFDVEL----LPLKYG 271
+ LQ KL+ A LKPGG+LVYSTC+++P ENE V+ ++L+ D +L LP+K
Sbjct: 212 YHSRLQKKLILAAYRALKPGGVLVYSTCTVDPLENEEVVDYLLQKTDAKLKKINLPIKST 271
Query: 272 EPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
EP L G S+E+KK R++P + T F++AKI K
Sbjct: 272 EPVLEWE-GRRYSEELKKTIRIHPQDNDTEAFYIAKIIK 309
>gb|AAA36398.1| (M32110) proliferating cell nuclear protein P120 [Homo sapiens]
Length = 869
Score = 207 bits (521), Expect = 2e-52
Identities = 118/285 (41%), Positives = 163/285 (56%), Gaps = 7/285 (2%)
Query: 33 QAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRV-PWAREGFCLTREPFSITSTPEY 91
+A E P P R NTLK ++L + L +G + W++ G + I +TPEY
Sbjct: 316 EANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEY 375
Query: 92 LTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDR 151
L G +Q ASSM P +AL P+ E + DM APGGKTSY+AQLM+N GVI A D + +R
Sbjct: 376 LAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAER 435
Query: 152 LKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTM 211
LK NL RLGV N I+ H ++ FD++LLDAPC+G+G I K+P K N+
Sbjct: 436 LKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDE 495
Query: 212 DDIKFCQGLQMKLVEKALEVL----KPGGILVYSTCSLEPEENEFVIQWVLENFDVELLP 267
DI C LQ +L+ A++ + K GG LVY TCS+ EENE+V+ + L+ +V L+P
Sbjct: 496 KDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVP 555
Query: 268 --LKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
L +G+ TR ++ RR YP H GFF+AK +K
Sbjct: 556 TGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKK 600
>gi|11436286 nucleolar protein 1 (120kD) [Homo sapiens]
Length = 812
Score = 207 bits (521), Expect = 2e-52
Identities = 118/285 (41%), Positives = 163/285 (56%), Gaps = 7/285 (2%)
Query: 33 QAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRV-PWAREGFCLTREPFSITSTPEY 91
+A E P P R NTLK ++L + L +G + W++ G + I +TPEY
Sbjct: 302 EANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEY 361
Query: 92 LTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDR 151
L G +Q ASSM P +AL P+ E + DM APGGKTSY+AQLM+N GVI A D + +R
Sbjct: 362 LAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAER 421
Query: 152 LKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTM 211
LK NL RLGV N I+ H ++ FD++LLDAPC+G+G I K+P K N+
Sbjct: 422 LKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDE 481
Query: 212 DDIKFCQGLQMKLVEKALEVL----KPGGILVYSTCSLEPEENEFVIQWVLENFDVELLP 267
DI C LQ +L+ A++ + K GG LVY TCS+ EENE+V+ + L+ +V L+P
Sbjct: 482 KDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVP 541
Query: 268 --LKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
L +G+ TR ++ RR YP H GFF+AK +K
Sbjct: 542 TGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKK 586
>gi|5453792 nucleolar protein 1 (120kD) [Homo sapiens]
>gi|1171747|sp|P46087|NOL1_HUMAN PROLIFERATING-CELL
NUCLEOLAR ANTIGEN P120 (PROLIFERATION-ASSOCIATED
NUCLEOLAR PROTEIN P120) >gi|482505|pir||A48168
proliferating-cell nucleolar antigen P120 - human
>gi|287723|emb|CAA39119.1| (X55504) P120 antigen [Homo
sapiens]
Length = 855
Score = 207 bits (521), Expect = 2e-52
Identities = 118/285 (41%), Positives = 163/285 (56%), Gaps = 7/285 (2%)
Query: 33 QAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRV-PWAREGFCLTREPFSITSTPEY 91
+A E P P R NTLK ++L + L +G + W++ G + I +TPEY
Sbjct: 302 EANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEY 361
Query: 92 LTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDR 151
L G +Q ASSM P +AL P+ E + DM APGGKTSY+AQLM+N GVI A D + +R
Sbjct: 362 LAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAER 421
Query: 152 LKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTM 211
LK NL RLGV N I+ H ++ FD++LLDAPC+G+G I K+P K N+
Sbjct: 422 LKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDE 481
Query: 212 DDIKFCQGLQMKLVEKALEVL----KPGGILVYSTCSLEPEENEFVIQWVLENFDVELLP 267
DI C LQ +L+ A++ + K GG LVY TCS+ EENE+V+ + L+ +V L+P
Sbjct: 482 KDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVP 541
Query: 268 --LKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
L +G+ TR ++ RR YP H GFF+AK +K
Sbjct: 542 TGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKK 586
>gi|11498459 proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
fulgidus] >gi|7445110|pir||E69356 proliferating-cell
nucleolar antigen P120 homolog - Archaeoglobus fulgidus
>gi|2649749|gb|AAB90385.1| (AE001045) proliferating-cell
nucleolar antigen P120, putative [Archaeoglobus
fulgidus]
Length = 317
Score = 201 bits (507), Expect = 7e-51
Identities = 122/282 (43%), Positives = 164/282 (57%), Gaps = 13/282 (4%)
Query: 35 MEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTREPFSITSTPEYLTG 94
M KPL R+NTLK V +V+ L K RVPW EGF L+ + FS PE+ G
Sbjct: 42 MVKPLRVSVRVNTLKAEVDEVVENL--KELITGRVPWCEEGFYLSIDEFS--RIPEHQLG 97
Query: 95 LIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKE 154
LI+ QEA+SM PP+ ++ +P V D+AA+PG KT+ +AQ ++N+G I A DV R+
Sbjct: 98 LIFSQEAASMIPPLVMELEPKMTVLDIAASPGAKTTQIAQYLQNEGCIVANDVKHSRINI 157
Query: 155 TRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPE--RKWNRTMD 212
NL R GVL + Y + FD +L+DAPC+ G I KN R W M
Sbjct: 158 LISNLQRCGVLIAKVTVKDGRYFGRFRNRFDAVLVDAPCSNMGMIRKNYRNIRLWK--MR 215
Query: 213 DIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLENFDVEL----LPL 268
D LQ L+ A + +KPGG++VYSTC+LEP ENE V+ ++L N D E+ LP+
Sbjct: 216 DCYGLSKLQKSLLMAAYKAVKPGGVVVYSTCTLEPIENEEVVDYILRNTDAEIEEVNLPV 275
Query: 269 KYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
K EP T+ G E S+E++K RL+P T GFFVAK+RK
Sbjct: 276 KGVEP-FTKFDGKEYSEEVRKCLRLHPQSSDTEGFFVAKLRK 316
>pir||T40814 probable nucleolar protein-NOL1-NOP2-sun family - fission yeast
(Schizosaccharomyces pombe) >gi|3810844|emb|CAA21805.1|
(AL032684) putative nucleolar protein; NOL1/NOP2/sun
family [Schizosaccharomyces pombe]
Length = 608
Score = 197 bits (495), Expect = 2e-49
Identities = 115/311 (36%), Positives = 176/311 (55%), Gaps = 10/311 (3%)
Query: 11 GYSKPFAERYYQLWG-ERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRV 69
GYS+ AE+ ++L+ A+ +A E P P R NTLK + L + L +G +
Sbjct: 234 GYSRFLAEKLFELFSVSEAVEFFEANEMPRPVTIRTNTLKTQRRELAQALINRGVNLEPI 293
Query: 70 -PWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGK 128
W++ G + I +TPEYL G +Q ASS P +AL P+P E + DM++APGGK
Sbjct: 294 GKWSKVGLQVFESQVPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGK 353
Query: 129 TSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILF-HSSSLYIDQLGIEFDKI 187
+Y+A L +N G+I+A D ++ R K N+ RLGV N I+ + + +++ FD++
Sbjct: 354 VTYVAALQKNTGIIFANDSNKARTKALSANIHRLGVRNAIVCNYDGRKFPNEVIGGFDRV 413
Query: 188 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVL----KPGGILVYSTC 243
LLDAPC+G+G I+K+ K N++ D LQ +L+ A++ + K GG +VYSTC
Sbjct: 414 LLDAPCSGTGVIYKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTC 473
Query: 244 SLEPEENEFVIQWVLE---NFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGT 300
S+ +E+E VIQ+ L+ N + L++G TR +K RR YP VH
Sbjct: 474 SITVDEDEAVIQYALKKRPNVKLVSTGLEFGREGFTRFREKRFHPSLKLTRRYYPHVHNI 533
Query: 301 SGFFVAKIRKL 311
GFFVAK++K+
Sbjct: 534 DGFFVAKLKKI 544
>dbj|BAB08657.1| (AB026659) nucleolar protein-like [Arabidopsis thaliana]
Length = 682
Score = 197 bits (495), Expect = 2e-49
Identities = 117/292 (40%), Positives = 168/292 (57%), Gaps = 9/292 (3%)
Query: 29 LRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVP-WAREGFCLTREPFSITS 87
+ + +A EK P R NTLK ++L L +G + W++ G + I +
Sbjct: 273 MELIEAFEKQRPTSIRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVIYDSQVPIGA 332
Query: 88 TPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDV 147
TPEYL G +Q ASS P +AL P+ E + D+AAAPGGKT+Y+A LM+N G+IYA ++
Sbjct: 333 TPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMKNTGLIYANEM 392
Query: 148 DEDRLKETRINLSRLGVLNVILFHSSSLYIDQ-LGIE-FDKILLDAPCTGSGTIHKNPER 205
RLK NL R+GV N I+ + + + LG D++LLDAPC+G+G I K+
Sbjct: 393 KVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQNTVDRVLLDAPCSGTGIISKDESV 452
Query: 206 KWNRTMDDIKFCQGLQMKLVEKALEVL----KPGGILVYSTCSLEPEENEFVIQWVLENF 261
K +TMD+IK LQ +L+ A++++ K GG +VYSTCS+ ENE VI + L+
Sbjct: 453 KITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGYIVYSTCSIMVTENEAVIDYALKKR 512
Query: 262 DVELLP--LKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRKL 311
DV+L+ L +G TR + K RR YP VH GFFVAK++K+
Sbjct: 513 DVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYPHVHNMDGFFVAKLKKM 564
>sp|Q60343|Y026_METJA HYPOTHETICAL PROTEIN MJ0026 >gi|2127710|pir||B64303 120K
proliferating-cell nucleolar antigen homolog -
Methanococcus jannaschii >gi|1592257|gb|AAB98007.1|
(U67461) proliferating-cell nucleolar antigen,
FMU/NOL1/NOP2 family [Methanococcus jannaschii]
Length = 274
Score = 196 bits (494), Expect = 2e-49
Identities = 120/274 (43%), Positives = 171/274 (61%), Gaps = 19/274 (6%)
Query: 44 RINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASS 103
R+NTLKI+ + L KRL KG + + F + + PFSI STPEYL G Q SS
Sbjct: 14 RVNTLKINPEVLKKRLENKGVVLEKT-FLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISS 72
Query: 104 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLG 163
M PP+ L+P+ + + DM AAPGGKT++LAQLM+NKG I A ++ + R K + N++R+G
Sbjct: 73 MIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG 132
Query: 164 VLNVILFHSSSL----YIDQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQG 219
VLN I+ ++ Y+ + I FDKILLDAPC SG I K+ R N + +DIK+C
Sbjct: 133 VLNTIIINADMRKYKDYLLKNEIFFDKILLDAPC--SGNIIKDKNR--NVSEEDIKYCSL 188
Query: 220 LQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLE-NFDVELLPLKYGEPALTRP 278
Q +L++ +++LK G LVYSTCS+E EENE VI+++L+ DVEL+ +K E
Sbjct: 189 RQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKANEFK---- 244
Query: 279 FGIELSD-EIKKARRLYPDVHGTSGFFVAKIRKL 311
GI + + IK R++P FF+AK+RK+
Sbjct: 245 -GINIKEGYIKGTLRVFPP---NEPFFIAKLRKI 274
>gb|AAF58504.1| (AE003822) CG8545 gene product [Drosophila melanogaster]
Length = 857
Score = 190 bits (479), Expect = 1e-47
Identities = 105/285 (36%), Positives = 159/285 (54%), Gaps = 7/285 (2%)
Query: 33 QAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRV-PWAREGFCLTREPFSITSTPEY 91
+A E P R NTLK ++L L +G + W + G + + +TPEY
Sbjct: 319 EASEIARPLTIRTNTLKTRRRDLAGALINRGVNLDPLGKWTKVGLVVFNSQVPLGATPEY 378
Query: 92 LTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDR 151
L G IQ ASS+ P +AL P+ E + DM +APGGK S++A +M+N GV++A D + DR
Sbjct: 379 LAGHYMIQGASSLLPVMALAPQENERILDMCSAPGGKGSHIASIMKNTGVLFANDSNRDR 438
Query: 152 LKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTM 211
+K N RLG++N ++ + FD++LLDAPCTG+G + K+P K ++
Sbjct: 439 IKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGFDRVLLDAPCTGTGVVSKDPSVKTTKSE 498
Query: 212 DDIKFCQGLQMKLVEKALEVL----KPGGILVYSTCSLEPEENEFVIQWVLENFDVELLP 267
D++ C LQ KL+ A++ GG +VYSTCS+ PEENE+VI + L+ +V+L+P
Sbjct: 499 VDVQRCYNLQRKLLLTAIDCTDAKSSTGGYIVYSTCSVLPEENEWVIDYALKKRNVKLVP 558
Query: 268 --LKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
L +G T+ + +R YP H GF+VAK++K
Sbjct: 559 TGLDFGVEGFTKFRQHRFHPSLNLTKRYYPHTHNMDGFYVAKLKK 603
>pir||T33803 hypothetical protein W07E6.1 - Caenorhabditis elegans (fragment)
>gi|3886025|gb|AAC78177.1| (AF106576) similar to the
nucleolar protein NOF1/NOP2 family [Caenorhabditis
elegans]
Length = 645
Score = 189 bits (476), Expect = 3e-47
Identities = 115/311 (36%), Positives = 169/311 (53%), Gaps = 10/311 (3%)
Query: 11 GYSKPFAERYYQLW--GERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFR- 67
GY+ ++ L+ G L +A + P P R N+LK+ ++L K L +G
Sbjct: 199 GYNDYLMGKFMDLFPNGAELLEFLEANDNPRPVTIRANSLKVKRRDLAKNLINRGMNVDP 258
Query: 68 RVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGG 127
W + G + + +TPEYL G IQ +S+ P +AL P+PG+ V DM +APGG
Sbjct: 259 AADWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGG 318
Query: 128 KTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIE-FDK 186
KTS++A LM+N GV++A D + R + NL RLGV N ++ + ++ FD+
Sbjct: 319 KTSHIAALMKNSGVLFANDANFTRCRAIIGNLHRLGVNNTVVCNLGGEEFSKIRPNGFDR 378
Query: 187 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKP----GGILVYST 242
ILLDAPC+G+G I K+ K ++ D++ +Q +L+ AL+ L GG LVYST
Sbjct: 379 ILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTMQRQLILSALDSLDANSPNGGYLVYST 438
Query: 243 CSLEPEENEFVIQWVLENFDVELLP--LKYGEPALTRPFGIELSDEIKKARRLYPDVHGT 300
CS+ EENE V+ ++LE EL+P L G TR + +R YP VH
Sbjct: 439 CSVLVEENEAVVNFLLERRHCELVPTGLSIGVDGYTRFRDYRFHPSLSMTKRYYPHVHNI 498
Query: 301 SGFFVAKIRKL 311
GF+VAKI+KL
Sbjct: 499 DGFYVAKIKKL 509
>gi|6324268 90-kDa protein, located in nucleolus, that is homologous to a human
proliferation-associated nucleolar protein, p120; Nop2p
[Saccharomyces cerevisiae]
>gi|730166|sp|P40991|NOP2_YEAST NUCLEOLAR PROTEIN NOP2
>gi|1078161|pir||A55188 nucleolar protein NOP2 - yeast
(Saccharomyces cerevisiae) >gi|576442|emb|CAA57979.1|
(X82656) Nop2p [Saccharomyces cerevisiae]
>gi|1098483|gb|AAA99650.1| (U12141) Ynl2428p
[Saccharomyces cerevisiae] >gi|1301934|emb|CAA95934.1|
(Z71337) ORF YNL061w [Saccharomyces cerevisiae]
>gi|1093321|prf||2103264A nuclear protein [Saccharomyces
cerevisiae]
Length = 618
Score = 189 bits (475), Expect = 4e-47
Identities = 115/310 (37%), Positives = 170/310 (54%), Gaps = 9/310 (2%)
Query: 11 GYSKPFAERYYQLWGE-RALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRV 69
GY+ AE+ + L+ A+ +A E P R NTLK ++L + L +G + +
Sbjct: 240 GYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPI 299
Query: 70 -PWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGK 128
W + G + I +TPEYL G +Q ASS P +ALDP E + DMAAAPGGK
Sbjct: 300 GSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGK 359
Query: 129 TSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKIL 188
T+Y++ +M+N G ++A D ++ R K N+ RLG N I+ + + ++ FD+IL
Sbjct: 360 TTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIGGFDRIL 419
Query: 189 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVL----KPGGILVYSTCS 244
LDAPC+G+G I K+ K +RT D LQ +L+ A++ + K GG++VYSTCS
Sbjct: 420 LDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTCS 479
Query: 245 LEPEENEFVIQWVLE---NFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTS 301
+ EE+E VI + L N + L G+ A T G + +K ARR YP +
Sbjct: 480 VAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNVD 539
Query: 302 GFFVAKIRKL 311
GFFVAK +K+
Sbjct: 540 GFFVAKFQKI 549
>emb|CAA58502.1| (X83512) Yna1p [Saccharomyces cerevisiae]
Length = 473
Score = 189 bits (475), Expect = 4e-47
Identities = 115/310 (37%), Positives = 170/310 (54%), Gaps = 9/310 (2%)
Query: 11 GYSKPFAERYYQLWGE-RALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRV 69
GY+ AE+ + L+ A+ +A E P R NTLK ++L + L +G + +
Sbjct: 95 GYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPI 154
Query: 70 -PWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGK 128
W + G + I +TPEYL G +Q ASS P +ALDP E + DMAAAPGGK
Sbjct: 155 GSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGK 214
Query: 129 TSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKIL 188
T+Y++ +M+N G ++A D ++ R K N+ RLG N I+ + + ++ FD+IL
Sbjct: 215 TTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIGGFDRIL 274
Query: 189 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVL----KPGGILVYSTCS 244
LDAPC+G+G I K+ K +RT D LQ +L+ A++ + K GG++VYSTCS
Sbjct: 275 LDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTCS 334
Query: 245 LEPEENEFVIQWVLE---NFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTS 301
+ EE+E VI + L N + L G+ A T G + +K ARR YP +
Sbjct: 335 VAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNVD 394
Query: 302 GFFVAKIRKL 311
GFFVAK +K+
Sbjct: 395 GFFVAKFQKI 404
>pir||C64945 probable rRNA methylase yebU - Escherichia coli
>gi|1736482|dbj|BAA15648.1| (D90827) Proliferating-cell
nucleolar antigen P120 (Proliferation-associated
nucleolar protein P120). [Escherichia coli]
>gi|1788140|gb|AAC74905.1| (AE000278) putative nucleolar
proteins [Escherichia coli K12]
Length = 481
Score = 187 bits (471), Expect = 1e-46
Identities = 113/285 (39%), Positives = 159/285 (55%), Gaps = 14/285 (4%)
Query: 34 AMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTRE---PFSITSTPE 90
A ++PL R R+NTLKISV + ++ G+ +PW EGF + R+ + ST E
Sbjct: 34 ACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAE 93
Query: 91 YLTGLIYIQEASSMYPPVAL--DPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVD 148
+L+GL YIQEASSM P AL D + V D+AAAPG KT+ ++ M N+G I A +
Sbjct: 94 HLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFS 153
Query: 149 EDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIE-FDKILLDAPCTGSGTIHKNPERKW 207
R+K N+SR G+ NV L H E FD ILLDAPC+G G + K+P+
Sbjct: 154 ASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALK 213
Query: 208 NRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLENFD--VEL 265
N + + + Q +L++ A L+PGG LVYSTC+L EENE V W+ E + VE
Sbjct: 214 NWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEF 273
Query: 266 LPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
LPL P + L++E ++P ++ GFFVA++RK
Sbjct: 274 LPLGDLFPGANK----ALTEE--GFLHVFPQIYDCEGFFVARLRK 312
>sp|P76273|YEBU_ECOLI HYPOTHETICAL 53.2 KD PROTEIN IN PRC-PRPA INTERGENIC REGION
Length = 479
Score = 187 bits (471), Expect = 1e-46
Identities = 113/285 (39%), Positives = 159/285 (55%), Gaps = 14/285 (4%)
Query: 34 AMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTRE---PFSITSTPE 90
A ++PL R R+NTLKISV + ++ G+ +PW EGF + R+ + ST E
Sbjct: 32 ACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAE 91
Query: 91 YLTGLIYIQEASSMYPPVAL--DPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVD 148
+L+GL YIQEASSM P AL D + V D+AAAPG KT+ ++ M N+G I A +
Sbjct: 92 HLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFS 151
Query: 149 EDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIE-FDKILLDAPCTGSGTIHKNPERKW 207
R+K N+SR G+ NV L H E FD ILLDAPC+G G + K+P+
Sbjct: 152 ASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALK 211
Query: 208 NRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLENFD--VEL 265
N + + + Q +L++ A L+PGG LVYSTC+L EENE V W+ E + VE
Sbjct: 212 NWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEF 271
Query: 266 LPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
LPL P + L++E ++P ++ GFFVA++RK
Sbjct: 272 LPLGDLFPGANK----ALTEE--GFLHVFPQIYDCEGFFVARLRK 310
>pir||D75033 probable proliferating-cell nucleolar antigen p120 PAB0830 -
Pyrococcus abyssi (strain Orsay)
>gi|5458674|emb|CAB50161.1| (AJ248287)
proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi]
Length = 449
Score = 185 bits (464), Expect = 7e-46
Identities = 112/301 (37%), Positives = 172/301 (56%), Gaps = 19/301 (6%)
Query: 16 FAERYYQLWGERALRIAQAM-EKPLPRCFRINTLKISVQNLVKRLNKKGFQF---RRVPW 71
F ER ++ G +A+ E+ R+NTLK +V+ +++ L G + RVP
Sbjct: 161 FIERVRKILGNETEEFFRAVNERQEWISVRVNTLKANVEEVIEELRNDGVEVVRSERVPT 220
Query: 72 AREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSY 131
+ + P++ S+ + G I +QE +S + L+P+PGE++ D+AAAPGGKT++
Sbjct: 221 ILK----IKGPYNFDSSKAFNKGKIIVQEEASAVASLILNPQPGEVIVDLAAAPGGKTTH 276
Query: 132 LAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVI-LFHSSSLYIDQLGIEF-DKILL 189
LA+LM+NKG IYAFD+D+ R+K + ++R+G+ V + + LG E D++LL
Sbjct: 277 LAELMKNKGKIYAFDIDKTRMKRLKEFVNRMGIKIVKPIIKDGRKAPEILGEEIADRVLL 336
Query: 190 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEE 249
DAPCT SGTI KNPE +W IK LQ +L+E A +++KPGG+L+Y+TCSL EE
Sbjct: 337 DAPCTSSGTIGKNPELRWRLRESKIKEMAQLQRELLESAAKLVKPGGLLLYTTCSLFTEE 396
Query: 250 NEFVIQWVLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIR 309
NE ++W L N ++ L P+ ++ R +P H T GFF A +R
Sbjct: 397 NEENVKWFLNNHQ------EFKLVHLNSPYD---PGFLEGTMRAWPHRHSTIGFFYALLR 447
Query: 310 K 310
K
Sbjct: 448 K 448
>pir||G71135 probable fmu protein - Pyrococcus horikoshii
>gi|3257262|dbj|BAA29945.1| (AP000003) 450aa long
hypothetical fmu protein [Pyrococcus horikoshii]
Length = 450
Score = 183 bits (459), Expect = 3e-45
Identities = 111/273 (40%), Positives = 161/273 (58%), Gaps = 20/273 (7%)
Query: 44 RINTLKISVQNLVKRLNKKGFQF---RRVPWAREGFCLTREPFSITSTPEYLTGLIYIQE 100
R+NTLK +V+ ++ L + G + RVP + + P++ ++ + G I +QE
Sbjct: 190 RVNTLKANVEEVIGELEEDGVEVVRSERVPTILK----IKGPYNFDTSSAFNEGKIIVQE 245
Query: 101 ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLS 160
+S + LDPKPGE V D+AAAPGGKT++LA+LM+NKG IYAFDVD+ R+K + +
Sbjct: 246 EASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVK 305
Query: 161 RLGVLNV-ILFHSSSLYIDQLGIEF-DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQ 218
R+G+ V L + + +G E DK+LLDAPCT SGTI KNPE +W D I
Sbjct: 306 RMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMS 365
Query: 219 GLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLE-NFDVELLPLKYGEPALTR 277
LQ +L+E A ++KPGG L+Y+TCS+ EENE I+W L + + +L+PLK
Sbjct: 366 QLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLK-------S 418
Query: 278 PFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
P+ ++ R +P H T GFF A + K
Sbjct: 419 PYD---PGFLEGTMRAWPHRHSTIGFFYALLEK 448
>pir||A82193 Sun/nucleolar protein family protein VC1502 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656005|gb|AAF94657.1| (AE004228) Sun/nucleolar
protein family protein [Vibrio cholerae]
Length = 503
Score = 178 bits (447), Expect = 7e-44
Identities = 111/290 (38%), Positives = 159/290 (54%), Gaps = 23/290 (7%)
Query: 34 AMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTREPFSIT--STPEY 91
A ++PL + R+NTLKISV +R +K +Q VPW GF + + + +T E+
Sbjct: 61 ACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEH 120
Query: 92 LTGLIYIQEASSMYPPVALDPKPG--EIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDE 149
+ GL YIQEASSM P AL + V DMAAAPG KT+ +A LM+N+GV+ A +
Sbjct: 121 MAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSA 180
Query: 150 DRLKETRINLSRLGVLNVILFH-SSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWN 208
R+K N+ R G+ N L + ++ L FD +L+DAPC+G GTI K+P+ N
Sbjct: 181 SRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKN 240
Query: 209 RTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLENFDVELLPL 268
+++ I+ Q L+E A + LK GG LVYSTC+L EEN+ V W L+
Sbjct: 241 WSLESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQQVC-WHLKQ-------- 291
Query: 269 KYGEPALTRPFG-------IELSDEIKKARRLYPDVHGTSGFFVAKIRKL 311
YG+ G + L++E ++P ++ GFFVAKIRKL
Sbjct: 292 TYGDAVSFESLGNLFEHASLALTEE--GFLHIFPQMYDCEGFFVAKIRKL 339
>pir||T08926 hypothetical protein T15N24.50 - Arabidopsis thaliana
>gi|7228247|emb|CAB77061.1| (AL078465) putative protein
[Arabidopsis thaliana] >gi|7269512|emb|CAB79515.1|
(AL161565) putative protein [Arabidopsis thaliana]
Length = 626
Score = 174 bits (437), Expect = 1e-42
Identities = 109/290 (37%), Positives = 154/290 (52%), Gaps = 31/290 (10%)
Query: 29 LRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVP-WAREGFCLTREPFSITS 87
+ + +A EK P R NTLK ++L L +G + W++ G + I +
Sbjct: 256 MELIEAFEKKRPTSIRTNTLKTRRRDLADILLNRGVNLDPLSKWSKVGLIVYDSQVPIGA 315
Query: 88 TPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDV 147
TPEYL G +Q ASS P +AL P+ E V DMAAAPGGKT+Y+A LM+N G+IYA ++
Sbjct: 316 TPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMKNTGIIYANEM 375
Query: 148 DEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKW 207
RLK NL R+GV N I+ + G I K+ K
Sbjct: 376 KVPRLKSLSANLHRMGVTNTIVCNYD---------------------GREVISKDESVKT 414
Query: 208 NRTMDDIKFCQGLQMKLVEKALEVL----KPGGILVYSTCSLEPEENEFVIQWVLENFDV 263
+++ DDIK LQ +L+ A++++ K GG +VYSTCS+ ENE VI + L+N DV
Sbjct: 415 SKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYIVYSTCSVMIPENEAVIDYALKNRDV 474
Query: 264 ELLP--LKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRKL 311
+L+P L +G P ++K RR YP VH GFFVAK++K+
Sbjct: 475 KLVPCGLDFGRPGFREH---RFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 521
>pir||G75137 sun protein (fmu protein) PAB2390 - Pyrococcus abyssi (strain
Orsay) >gi|5458327|emb|CAB49816.1| (AJ248285) SUN
PROTEIN (FMU PROTEIN) [Pyrococcus abyssi]
Length = 450
Score = 157 bits (394), Expect = 1e-37
Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 16/308 (5%)
Query: 8 LTLGYSKP--FAERYYQLWG-ERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGF 64
L++ +S P + E + G + A+R+ + +P R+NTLK + + + L + G
Sbjct: 153 LSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRYYVRVNTLKADIDKVRRYLEENGV 212
Query: 65 QFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAA 124
+ P L E +T + G IQ+ +S Y L+P+PGE V D+AAA
Sbjct: 213 RVALTPVDDVLKVLDYEK-PVTRLEWHRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAA 271
Query: 125 PGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHS-SSLYIDQLGIE 183
PG KT + A LMENKG I A D DRL + + + RLGV NV L H+ +ID+ G
Sbjct: 272 PGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRLGVKNVKLVHADGQSFIDREG-- 329
Query: 184 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTC 243
F+KI+LDAPC+ SGT + PE KW + IK +Q ++ A L+ GG + YSTC
Sbjct: 330 FEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRNMLLNAYRNLRSGGEMTYSTC 389
Query: 244 SLEPEENEFVIQWVLE-NFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSG 302
S+ +ENE + + LE F++ P ++G+ +E+ +++ +A + H +
Sbjct: 390 SIRIDENEENVIFALEKGFEIVDYPFEWGDKGF-----LEIGEKVFRA---WTHKHDCNS 441
Query: 303 FFVAKIRK 310
FF+AK+RK
Sbjct: 442 FFIAKLRK 449
>pir||A75030 probable proliferating-cell nucleolar antigen p120 PAB1173 -
Pyrococcus abyssi (strain Orsay)
>gi|5459193|emb|CAB50679.1| (AJ248288)
proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi]
Length = 385
Score = 156 bits (390), Expect = 4e-37
Identities = 90/229 (39%), Positives = 130/229 (56%), Gaps = 14/229 (6%)
Query: 84 SITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIY 143
S++ + G Y Q SM L+PK E++ DMAAAPGGKT+++AQL++N+G I
Sbjct: 168 SLSELKSFEKGYFYPQSLPSMVATRVLEPKEDELIIDMAAAPGGKTTHIAQLLQNRGEII 227
Query: 144 AFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNP 203
A D ++RLK+ NL RLGV NV L + + LG++ DKILLDAPCT G P
Sbjct: 228 AIDKSKNRLKKMEENLRRLGVKNVKLIQMDARNLPDLGLKADKILLDAPCTALGV---RP 284
Query: 204 ERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVL-ENFD 262
+ RT I+ Q + A++ L+ GG+LVYSTC+L EENE ++++L +
Sbjct: 285 KLWEERTPKHIEATARYQRAFIWAAIKSLRKGGVLVYSTCTLSYEENEGNVKFMLKKGMK 344
Query: 263 VELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRKL 311
+E + G P + + K +R YP H T GFF+AK+RK+
Sbjct: 345 LEDQQIFIGSPGI----------GLDKVQRFYPHKHNTQGFFIAKLRKV 383
>pir||C71102 probable fmu protein - Pyrococcus horikoshii
>gi|3257494|dbj|BAA30177.1| (AP000004) 450aa long
hypothetical fmu protein [Pyrococcus horikoshii]
Length = 450
Score = 155 bits (388), Expect = 6e-37
Identities = 107/308 (34%), Positives = 161/308 (51%), Gaps = 16/308 (5%)
Query: 8 LTLGYSKP--FAERYYQLWG-ERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGF 64
L++ +S P + E +L G + +R+ + +P R+NTLK+ V + + L + G
Sbjct: 153 LSVRFSHPRWYVEYVVKLLGYDETVRLLLSNLRPQRYYIRVNTLKVDVDRVKRYLEENGV 212
Query: 65 QFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAA 124
+ P L E +T Y G IQ+ +S Y L+P+PGE V D+AAA
Sbjct: 213 RVSLTPVDDVLKVLEYEK-PVTKLEWYRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAA 271
Query: 125 PGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEF 184
PG KT + A LMEN+G I A D DRL + R + +LGV NV L H+ + +F
Sbjct: 272 PGSKTFHAAALMENRGEIVAVDYSYDRLIKMRERMKKLGVKNVKLVHADGQSYTEKE-KF 330
Query: 185 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCS 244
DKI+LDAPC+ SGT + PE KW + IK +Q ++ A L GG + YSTCS
Sbjct: 331 DKIILDAPCSSSGTYRQFPEVKWRFNEEKIKRVISVQRNMLINAYRNLAGGGEMTYSTCS 390
Query: 245 LEPEENEFVIQWVLENFDVELL--PLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSG 302
+ +ENE + + +E +EL+ P ++G+ +E+ D K R + H +
Sbjct: 391 IRIDENEQNVLFAIEK-GLELVDYPFEWGDKGF-----LEIGD---KVFRTWTHKHDCNS 441
Query: 303 FFVAKIRK 310
FF+AK+RK
Sbjct: 442 FFIAKLRK 449
>pir||G71215 probable nucleolar protein - Pyrococcus horikoshii
>gi|3258435|dbj|BAA31118.1| (AP000007) 389aa long
hypothetical nucleolar protein [Pyrococcus horikoshii]
Length = 389
Score = 154 bits (386), Expect = 1e-36
Identities = 89/229 (38%), Positives = 131/229 (56%), Gaps = 14/229 (6%)
Query: 84 SITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIY 143
S++ + G Y Q SM L+PK +++ DMAAAPGGKT+++AQL+ENKG I
Sbjct: 171 SLSELKAFEKGYFYPQGLPSMVTARVLEPKEDDVIIDMAAAPGGKTTHIAQLLENKGEII 230
Query: 144 AFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNP 203
A D ++RL++ N+ RLGV NV L + + LGI+ DKILLDAPCT G P
Sbjct: 231 AIDKSKNRLRKMEENIKRLGVKNVKLVQMDARKLPDLGIKADKILLDAPCTALGV---RP 287
Query: 204 ERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVL-ENFD 262
+ RT+ I+ Q + A++ L+ GG+LVYSTC+L EENE +++++ +
Sbjct: 288 KLWEERTLKHIEATARYQRAFIWAAIKSLRRGGVLVYSTCTLSYEENEGNVKFMIRKGMK 347
Query: 263 VELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRKL 311
+E + G P + + K +R YP H T GFF+AK+RK+
Sbjct: 348 LEEQSIFIGSPGI----------GMNKVQRFYPHKHLTQGFFIAKLRKV 386
>gb|AAG19031.1| (AE005002) proliferating-cell nucleolar antigen; Cna [Halobacterium
sp. NRC-1]
Length = 303
Score = 149 bits (373), Expect = 3e-35
Identities = 96/284 (33%), Positives = 144/284 (49%), Gaps = 13/284 (4%)
Query: 34 AMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTREPFSITSTPEYLT 93
A E+PLP R+N L ++ V+ L +G R W L + +T Y+
Sbjct: 20 ACERPLPTTVRVNPLAVTPDRAVEALAAEGVAVDRREW--HPGVLEVDTNKPGNTWPYVH 77
Query: 94 GLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLK 153
G ++ QE S PP LDP+PG++V D AAPGGKT+ +A +++ G++ A D + RL
Sbjct: 78 GWVHGQEEVSCVPPRVLDPEPGDVVWDACAAPGGKTAQIAAEIDDDGLVVANDDNLGRLS 137
Query: 154 ETRINLSRLGVLNVILFHSSS------LYIDQLGIEFDKILLDAPCTGSGTIHKNPERKW 207
R N RLGV + + ++ + + D + D L+DAPC+ GTI KN +
Sbjct: 138 ALRGNCDRLGVTSAAVTNTDARRATLDAFPDVAAV--DAALVDAPCSCEGTIRKNADALD 195
Query: 208 NRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLENFDVELLP 267
+ LQ ++ +A+ + +PGG +VYSTC+ PEENE V+ VL D L+
Sbjct: 196 GAGASASRSLGRLQADILARAVALTRPGGTVVYSTCTFAPEENEAVVDEVLGRTDSRLVE 255
Query: 268 LKYG---EPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKI 308
G P LT D + +A+R YP + T GFF AK+
Sbjct: 256 FDVGLASAPGLTEWGDASYDDSLARAQRYYPHHNDTGGFFAAKL 299
>dbj|BAB06226.1| (AP001515) unknown conserved protein [Bacillus halodurans]
Length = 450
Score = 146 bits (366), Expect = 2e-34
Identities = 96/318 (30%), Positives = 169/318 (52%), Gaps = 25/318 (7%)
Query: 6 KLLTLGYSKP--FAERYYQLWGER-ALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKK 62
K L + YS P +R+ +GE + I + M P R+N K +V+ ++RL +
Sbjct: 143 KRLAVEYSYPEWLVKRWIDQYGEEETVSICEEMLLPPKVTARVNVRKRTVEEALERLEHE 202
Query: 63 GFQFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMA 122
G Q + + + + +ITST + G + IQ+ SSM A+ P+PGE + D
Sbjct: 203 GVQATNGVLSDDAIVVDKG--TITSTRLFQDGELTIQDESSMLVARAVAPRPGERILDAC 260
Query: 123 AAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILF-----HSSSLYI 177
AAPGGK++++A+ M+ +G I + D+ ++K RLG+ N+ + ++
Sbjct: 261 AAPGGKSTHMAERMDGEGTIVSLDMHRHKVKLIEEQAKRLGLDNIKAQTLDARKAREVFA 320
Query: 178 DQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGI 237
D+ FD+IL+DAPC+G G I + P+ KW + D+K + +Q+ ++ +++KPGG+
Sbjct: 321 DE---PFDRILVDAPCSGLGVIRRKPDIKWTKREADMKAIRNVQLDILSSVAKLVKPGGL 377
Query: 238 LVYSTCSLEPEENEFVIQWVLE---NFDVELLPLKYGEPALTR-PFGIELSDEIKKAR-R 292
L+YSTC+++ ENE VI +E F ++ + L R P ++ + I++
Sbjct: 378 LIYSTCTIDQLENEQVIAEFMEAHGEFSID-------DTVLDRLPAAVQATCNIREGMVT 430
Query: 293 LYPDVHGTSGFFVAKIRK 310
+ P GT GFF+ ++K
Sbjct: 431 ILPHHFGTDGFFITCLKK 448
>pir||A72478 probable fmu protein APE2465 - Aeropyrum pernix (strain K1)
>gi|5106170|dbj|BAA81481.1| (AP000064) 420aa long
hypothetical fmu protein [Aeropyrum pernix]
Length = 420
Score = 146 bits (366), Expect = 2e-34
Identities = 101/289 (34%), Positives = 147/289 (49%), Gaps = 22/289 (7%)
Query: 30 RIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAR---EGFCLTREPFSIT 86
++ A+ +P R+NTLK S + K + G W EG R PF+ T
Sbjct: 144 KLLDAINRPPVNSVRVNTLKASFDEVYKAIRSSGLY----AWPSDRVEGVIRYRGPFNDT 199
Query: 87 STPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFD 146
G I Q+ SS L P+PGEIV DM AAPGGKT++LA+L + I FD
Sbjct: 200 LARLLAEGKIVPQDESSAAAAPLLQPRPGEIVLDMCAAPGGKTTHLAELSRLQARILGFD 259
Query: 147 VDEDRLKETRI----NLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKN 202
+ DRL+ + S V V +++ I G DKILLD PC+ +G +HKN
Sbjct: 260 IYWDRLRRMKTLVEATASEAAVAVVKADAANAPKILGRG-SVDKILLDPPCSTTGGLHKN 318
Query: 203 PERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLENF- 261
+ +W T I Q LQ L++ A+E +KPGG+++Y+ CS+ EE E V+ LE +
Sbjct: 319 VDARWRLTRRKIMELQELQKTLLDAAVETVKPGGLILYTVCSILAEEGEDVVLHALEKWG 378
Query: 262 DVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
++E++P L P+ + S + R +P HG +GFF A +RK
Sbjct: 379 NLEIVP-------LNGPY--DESPILPGTMRAWPHRHGVTGFFYALLRK 418
>sp|P72943|SUN_SYNY3 SUN PROTEIN (FMU PROTEIN) >gi|7429453|pir||S74920 fmu protein -
Synechocystis sp. (strain PCC 6803)
>gi|1652035|dbj|BAA16960.1| (D90902) fmu and fmv protein
[Synechocystis sp.]
Length = 446
Score = 144 bits (359), Expect = 2e-33
Identities = 100/317 (31%), Positives = 162/317 (50%), Gaps = 20/317 (6%)
Query: 5 EKLLTLG--YSKP--FAERYYQLWGERALRIAQAMEKPLPRC-FRINTLKISVQNLVKRL 59
++ ++LG YS P E + Q WG+ A P RIN LK S + + L
Sbjct: 138 QEKISLGEQYSFPDWLMELFEQTWGKAETESLCAYFNQNPSLDLRINPLKTSRVEVAQSL 197
Query: 60 NKKGFQFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVA 119
+ + +G L + +IT P + G +Q+AS+ + L+P+P E +
Sbjct: 198 AELNLTTTAMAGLPQGLRLGGKTGAITQLPGFAEGWWTVQDASAQWVAQILNPQPEETIF 257
Query: 120 DMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQ 179
D+ AAPGGKT+++A+LM ++G IYA D RL++ + RLG+ ++ ++ + Q
Sbjct: 258 DVCAAPGGKTTHIAELMGDQGQIYAGDRHGWRLQKLAVTQQRLGLTSIKIWEGD---LTQ 314
Query: 180 LGIE-----FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKP 234
G++ D+ LLD PC+G GT+H+NP+ +W +T I LQ L++ ++K
Sbjct: 315 PGVKPPVELVDRALLDVPCSGLGTLHRNPDLRWRQTPATIATLLPLQQALLKAIAPLVKS 374
Query: 235 GGILVYSTCSLEPEENEFVIQWVLENF-DVELLPLKYGEPALTRPFGIELSDEIKKARRL 293
GG LVYSTC+L P ENE I+ L++ D P ++ T P G + + +
Sbjct: 375 GGTLVYSTCTLNPAENEAQIERFLQDHEDWRSEPFEW-----TSPQG-QTNSVTSGMLTI 428
Query: 294 YPDVHGTSGFFVAKIRK 310
P H GFF+A ++K
Sbjct: 429 LPHHHHQDGFFIANLKK 445
>sp|P94464|SUN_BACSU SUN PROTEIN >gi|7429452|pir||E69878 RNA-binding Sun protein homolog
yloM - Bacillus subtilis >gi|2337803|emb|CAA74264.1|
(Y13937) putative Fmu protein [Bacillus subtilis]
>gi|2633946|emb|CAB13447.1| (Z99112) alternate gene
name: sun~similar to RNA-binding Sun protein [Bacillus
subtilis]
Length = 447
Score = 143 bits (358), Expect = 2e-33
Identities = 93/293 (31%), Positives = 158/293 (53%), Gaps = 20/293 (6%)
Query: 26 ERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTREPFSI 85
E A +I + P + R+N +K L+ ++ +G + + A + L + +I
Sbjct: 165 EAAEKICRIHLIPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKG--TI 222
Query: 86 TSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAF 145
T + G + IQ+ SSM ALDPK E V D AAPGGK++++A+LM+NKG + +
Sbjct: 223 AGTHFFQNGEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSL 282
Query: 146 DVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGI-----EFDKILLDAPCTGSGTIH 200
D+ + ++K + RLG+ + H+ ++ + G +FD+IL+DAPC+G G I
Sbjct: 283 DLHKHKVKLIKEAADRLGLT---IIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIR 339
Query: 201 KNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQ-WVLE 259
+ P+ K+ + DD +Q+ ++ + ++K GG LVYSTC+++ EN+ VI ++ E
Sbjct: 340 RKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDEVIHAFIQE 399
Query: 260 NFDVEL-LPLKYGEPALTRPFGIELSDEIKKAR-RLYPDVHGTSGFFVAKIRK 310
+ D E L L+ P RPF ++ R ++ P GT GFF+ +RK
Sbjct: 400 HPDFEPDLSLEKRLPEKVRPF-------VRDGRLQILPHYFGTDGFFICSMRK 445
>pir||B81093 fmu and fmv protein, probable NMB1351 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226595|gb|AAF41725.1| (AE002483) fmu and fmv
protein, putative [Neisseria meningitidis MC58]
Length = 418
Score = 139 bits (348), Expect = 3e-32
Identities = 90/297 (30%), Positives = 151/297 (50%), Gaps = 10/297 (3%)
Query: 18 ERYYQLWGERA-LRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGF 76
E+ Q W E L +++ +P P R+NTLK ++ L + P++ G
Sbjct: 127 EQLKQHWREEEILAFGRSINQPAPLDIRVNTLKGKRDKVLPLLQAESADAEATPYSPWGI 186
Query: 77 CLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLM 136
L + ++ +L G + +Q+ S + + K GEI+ D A GGKT + M
Sbjct: 187 RL-KNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRGEIIVDFCAGAGGKTLAVGAQM 245
Query: 137 ENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLY---IDQLGIEFDKILLDAPC 193
NKG IYAFD+ E RL + ++R G+ N+ S + I +L + D++L+DAPC
Sbjct: 246 ANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERIGSEHDARIARLAGKADRVLVDAPC 305
Query: 194 TGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFV 253
+G GT+ +NP+ K+ ++ + + Q +++ A +++KP G LVY+TCS+ PEENE
Sbjct: 306 SGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLVKPQGRLVYATCSILPEENELQ 365
Query: 254 IQWVLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
++ L E P+ E G+++ + K RL H T GFF A +++
Sbjct: 366 VERFLSEHP-EFEPVNCAELLA----GLKIDLDTGKYLRLNSARHQTDGFFAAVLQR 417
>pir||F81848 SUN-family protein NMA1563 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7380204|emb|CAB84790.1|
(AL162756) SUN-family protein [Neisseria meningitidis
Z2491]
Length = 418
Score = 139 bits (346), Expect = 5e-32
Identities = 92/297 (30%), Positives = 151/297 (49%), Gaps = 10/297 (3%)
Query: 18 ERYYQLWGERA-LRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGF 76
E+ Q W E L +++ + P R+NTLK ++ L + P++ G
Sbjct: 127 EQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKGKRDKVLPLLQAESADAEATPYSPWGI 186
Query: 77 CLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLM 136
L + ++ +L G + +Q+ S + + K GEI+ D A GGKT + M
Sbjct: 187 RL-KNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRGEIIVDFCAGAGGKTLAIGAQM 245
Query: 137 ENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLY---IDQLGIEFDKILLDAPC 193
NKG IYAFD+ E RL + ++R G+ NV SS + I +L + D++L+DAPC
Sbjct: 246 ANKGRIYAFDIAEKRLANLKPRMTRAGLTNVHPERISSEHDSRIARLAGKADRVLVDAPC 305
Query: 194 TGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFV 253
+G GT+ +NP+ K+ ++ + + Q +++ A +++KP G LVY+TCS+ PEENE
Sbjct: 306 SGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLVKPQGRLVYATCSILPEENELQ 365
Query: 254 IQWVLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
++ L E P+ E L + ++L K RL H T GFF A +++
Sbjct: 366 VERFLSEHP-EFEPVNCAE--LLQSLKVDL--HTGKYLRLNSGEHQTDGFFAAVLQR 417
>gb|AAF14354.1|AF113138_1 (AF113138) nucleolar protein Nop2 [Eremothecium gossypii]
Length = 240
Score = 138 bits (345), Expect = 7e-32
Identities = 80/207 (38%), Positives = 115/207 (54%), Gaps = 7/207 (3%)
Query: 111 DPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILF 170
DP E + DMAAAPGGKT+Y++ +M+N G ++A D ++ R K N+ RLG N I+
Sbjct: 1 DPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVC 60
Query: 171 HSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALE 230
+ + ++ FD+ILLDAPC+G+G I K+ K NRT D LQ +L+ A++
Sbjct: 61 NYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVNRTEKDFMQIPHLQKQLILSAID 120
Query: 231 VL----KPGGILVYSTCSLEPEENEFVIQWVLE---NFDVELLPLKYGEPALTRPFGIEL 283
+ K GG++VYSTCS+ EENE V+ + L N + L G+ T G +
Sbjct: 121 SVDSNSKHGGVIVYSTCSVAVEENEAVVDYALRKRPNVKLVETGLAIGKEGSTSYRGKKF 180
Query: 284 SDEIKKARRLYPDVHGTSGFFVAKIRK 310
RR YP + GFFVAK +K
Sbjct: 181 HPHYHLTRRYYPHTYNVDGFFVAKFQK 207
>pir||G82372 sun protein VC0044 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9654437|gb|AAF93222.1| (AE004095) sun
protein [Vibrio cholerae]
Length = 434
Score = 137 bits (342), Expect = 2e-31
Identities = 92/299 (30%), Positives = 141/299 (46%), Gaps = 24/299 (8%)
Query: 14 KPFAERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAR 73
K E Y + W + I +A P R+N + L + G A
Sbjct: 156 KLLKESYPEQWQQ----IVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAE 211
Query: 74 EGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLA 133
+ CL P + P + G + +Q+A++ L P+ GE++ D AAPGGKT+++
Sbjct: 212 DALCL-ETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHIL 270
Query: 134 QLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQL--GIEFDKILLDA 191
+ V+ A D DE RLK R NL RL + ++ + Y Q G +FD+ILLDA
Sbjct: 271 ERTPESQVV-AIDCDETRLKRVRENLQRLELTAQVIC-GDARYPQQWWQGEQFDRILLDA 328
Query: 192 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENE 251
PC+ +G I ++P+ KW R DDI LQ ++++ + LKPGG LVY+TCS+ P+EN
Sbjct: 329 PCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENR 388
Query: 252 FVIQWVLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
++ LE T + SD + R++ P GF+ A + K
Sbjct: 389 LQVKAFLER---------------TPDARLVGSDPAQPGRQILPGEEAMDGFYYAVLSK 432
>sp|P44788|SUN_HAEIN SUN PROTEIN (FMU PROTEIN) >gi|1074459|pir||F64155 hypothetical
protein HI0624 - Haemophilus influenzae (strain Rd KW20)
>gi|1573620|gb|AAC22284.1| (U32745) sun protein (sun)
[Haemophilus influenzae Rd]
Length = 451
Score = 136 bits (340), Expect = 3e-31
Identities = 94/300 (31%), Positives = 150/300 (49%), Gaps = 26/300 (8%)
Query: 18 ERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFC 77
++ Y W E I +A + P R+N+ K +++ L ++G + C
Sbjct: 168 KKAYPNWRE----IIEANNQKPPMWLRVNSQKNALETYRTLLEEQGVS-SKTSHHPNALC 222
Query: 78 LTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLME 137
L P ++ P + G + +Q+ S+ + L+PK E + D AAPGGKT+++ +L
Sbjct: 223 LDI-PIAVQKLPHFEEGAVTVQDLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAP 281
Query: 138 NKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSL---YIDQLG---IEFDKILLDA 191
VI A DV+ RLK NL RL +++ +S ++ ++G +FD+ILLDA
Sbjct: 282 QANVI-ALDVESHRLKRVEENLERLNQQAIVVCGDASKPDEWLAEIGKSAAKFDRILLDA 340
Query: 192 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENE 251
PC+ +G I ++P+ KW R DI LQ K++ E LKP G+L+Y+TCS+ PEEN
Sbjct: 341 PCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENC 400
Query: 252 FVIQWVLE-NFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
IQ L + D ELL L + + D+ + P + GF+ AK+ K
Sbjct: 401 EQIQAFLNAHADAELLSLPFSD------------DKSAVGFQFIPQPNSGDGFYYAKLLK 448
>pir||C81412 NOL1/NOP2/sun family protein Cj0636 [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6968103|emb|CAB75272.1|
(AL139075) NOL1\NOP2\sun family protein [Campylobacter
jejuni]
Length = 279
Score = 134 bits (335), Expect = 1e-30
Identities = 100/275 (36%), Positives = 143/275 (51%), Gaps = 16/275 (5%)
Query: 42 CFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCL---TREPFSITSTPEYLTGLIYI 98
C NTLK S++ L K K+ +F+++ +C ++ ++S + YI
Sbjct: 15 CVFANTLKTSIEELEKEFLKQNLKFKKI----NVYCYLFDAKDKAILSSMKAFNEAHFYI 70
Query: 99 QEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRIN 158
Q SS + L+ K G+ V DM AAPGGK+ LA M+N G + ++ DR + N
Sbjct: 71 QNYSSYLCALNLEVKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKN 130
Query: 159 LSRLGVLNVILFHSSSLYIDQL-GIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFC 217
L GV N +F I L ++FDKILLDAPC+ I + E+ + +IK
Sbjct: 131 LKNYGV-NAKVFMKDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLEKSYK----EIKNI 185
Query: 218 QGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLEN-FDVELLPLKYGEPALT 276
Q KL+ AL+ LK GG LVYSTC+ EENE VI+ L++ F +ELL + E
Sbjct: 186 AKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELLDIDL-ENVEA 244
Query: 277 RPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRKL 311
+ E EI K RR+ P + GFF+AK+RKL
Sbjct: 245 KAGQSEEFAEISKCRRILPSL-DYDGFFIAKLRKL 278
>gi|11499905 fmu and fmv protein [Archaeoglobus fulgidus]
>gi|7445109|pir||D69540 fmu and fmv protein homolog -
Archaeoglobus fulgidus >gi|2648195|gb|AAB88932.1|
(AE000944) fmu and fmv protein [Archaeoglobus fulgidus]
Length = 437
Score = 134 bits (333), Expect = 2e-30
Identities = 105/313 (33%), Positives = 159/313 (50%), Gaps = 24/313 (7%)
Query: 6 KLLTLGYSKP--FAERYYQLWGER-ALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKK 62
K L+L Y P F + +L GE AL++ +A + P R+N LK SV+++ + L K
Sbjct: 139 KELSLTYFHPEWFVKYAIELLGEDGALKLMKANLRNPPTYVRVNELKGSVESVREYLEKN 198
Query: 63 GFQFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMA 122
G + E F + S + G IQ+ +S + AL+P PG++V D+A
Sbjct: 199 GVILEET-FLDEVFRVKGYEKHPASLDWHSEGKYVIQDLASCFVSHALNPSPGDVVIDLA 257
Query: 123 AAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGI 182
AAPG KT+++A LM+N+G I A D R++ R L +LGV NV + +
Sbjct: 258 AAPGMKTAHMAMLMQNEGRIVAVDNSPSRVRRMRSKLKQLGVKNVEIKLGDGCVFE---C 314
Query: 183 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKF--CQGLQMKLVEKALEVLKPGGILVY 240
E DK L+DAPC+ +G P KW T D+ KF +Q K++ A L+ +VY
Sbjct: 315 EADKALVDAPCSSTGNYASQPNVKW--TFDERKFRATMKVQRKMIANA---LRNADEVVY 369
Query: 241 STCSLEPEENEFVIQWVLENF---DVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDV 297
+TCS+ EENE EN ++LPL R F L + +K R +P +
Sbjct: 370 ATCSITFEENE-------ENLLKTGAKILPLPSPFGRGVREFRGVLFRDWEKVVRSFPHL 422
Query: 298 HGTSGFFVAKIRK 310
H T+GFF++K+ +
Sbjct: 423 HDTAGFFISKLTR 435
>pir||A72245 sun protein - Thermotoga maritima (strain MSB8)
>gi|4982078|gb|AAD36579.1|AE001799_11 (AE001799) sun
protein [Thermotoga maritima]
Length = 431
Score = 130 bits (323), Expect = 3e-29
Identities = 86/271 (31%), Positives = 149/271 (54%), Gaps = 9/271 (3%)
Query: 6 KLLTLGYSKP-FAERYYQ--LWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKK 62
K L L YS P + Y++ L E LRI + ++PLP R+N+L + + ++K L ++
Sbjct: 126 KELHLVYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRVNSLAATKEEVIKILAEE 185
Query: 63 GFQFRRVPWAREGFCLTREPFSITSTPEYLT--GLIYIQEASSMYPPVALDPKPGEIVAD 120
G + VP F L + + GL +Q SS P ++ +PG V D
Sbjct: 186 GTE--AVPGKHAPFSLIVRKLGVPMNDSRVINDGLASVQGESSQLVPFFMELRPGLRVLD 243
Query: 121 MAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNV-ILFHSSSLYIDQ 179
AAPGGKT+ +A+LM+++G I A D+ ++++ + RL + ++ + +
Sbjct: 244 TCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIETKIADAERLTEY 303
Query: 180 LGIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILV 239
+ FD++L+DAPCT GT +PE +D + +Q+++V++A ++L+ GGIL+
Sbjct: 304 VQDTFDRVLVDAPCTSLGTARNHPEVLRRVNKEDFEKFSEIQLRMVQQAWQLLEKGGILL 363
Query: 240 YSTCSLEPEEN-EFVIQWVLENFDVELLPLK 269
YSTC++ EEN E V ++V E DVE++ ++
Sbjct: 364 YSTCTVTKEENTEVVKRFVYEQKDVEVIDIR 394
>sp|P45679|SUN_COXBU SUN PROTEIN (FMU PROTEIN)
Length = 430
Score = 129 bits (320), Expect = 6e-29
Identities = 91/286 (31%), Positives = 142/286 (48%), Gaps = 16/286 (5%)
Query: 1 MAILEKLLTLGYSKP--FAERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKR 58
+ EK + Y+ P F + + W + I A P R+N KIS + ++
Sbjct: 124 LTFTEKTIEGQYAHPLWFIQHIKKAWPDHWESILIANNARPPMTLRVNLTKISREIYLEM 183
Query: 59 LNKKGFQFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIV 118
L++K + + + L + P S+ P + G YIQ+A+ + L + + V
Sbjct: 184 LDQKNISAKPLDFLPAAIQLEK-PCSVHQLPGFNEGYCYIQDAAGQFAAYLLKLENNQTV 242
Query: 119 ADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGV----LNVILFHSSS 174
D AAPG KTS++ ++ + + A D ++ RL + N++RLG+ L +L S
Sbjct: 243 LDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLGLRQEHLQCLLADVSQ 302
Query: 175 LYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKP 234
+ G FD+ILLDAPC+ +G I ++P+ K R DI +++L+ VLK
Sbjct: 303 IDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQYHQKKLQLLNALWTVLKA 362
Query: 235 GGILVYSTCSLEPEENEFVIQWVLENFD-VELLP--------LKYG 271
GG L+YSTCS+ P+ENE VI+ L D VEL P LKYG
Sbjct: 363 GGFLLYSTCSVLPDENEKVIEEFLSTHDKVELSPTNVHGGLQLKYG 408
>dbj|BAB01410.1| (AP000375) contains similarity to SUN and FMU
proteins~gene_id:MJG19.14 [Arabidopsis thaliana]
Length = 531
Score = 129 bits (320), Expect = 6e-29
Identities = 76/221 (34%), Positives = 130/221 (58%), Gaps = 17/221 (7%)
Query: 94 GLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLK 153
G+ +Q+ S+ + P+PGE + D AAPGGKT ++A ++ +G+IYA DV+E RL+
Sbjct: 318 GICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIYAMDVNEGRLR 377
Query: 154 ---ETRINLSRLGVLNVILFHSS-SLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWNR 209
ET + G++ I HS ++ + +++DK+LLDAPC+G G + K + +WNR
Sbjct: 378 ILGETAKSHQVDGLITTI--HSDLRVFAETNEVQYDKVLLDAPCSGLGVLSKRADLRWNR 435
Query: 210 TMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQ-WVLENFDVELLPL 268
++D+ LQ +L++ A +++K GG+LVYSTCS++PEENE ++ ++L + + + P+
Sbjct: 436 KLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLLRHPEFTIDPV 495
Query: 269 KYGEP-ALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKI 308
P + G LS+ +K H G F A++
Sbjct: 496 TSFVPSSFVTSQGFFLSNPVK---------HSLDGAFAARL 527
>pir||F83643 conserved hypothetical protein PA0017 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9945836|gb|AAG03407.1|AE004441_8 (AE004441)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 434
Score = 125 bits (312), Expect = 5e-28
Identities = 89/305 (29%), Positives = 143/305 (46%), Gaps = 16/305 (5%)
Query: 10 LGYSKPFAERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRV 69
LG+ + + Q W E+ + A P R+N + L + G + R
Sbjct: 140 LGHPRWLLKALKQAWPEQLDALCAANNAHPPMTLRVNRRHGERDAYLAELAEAGIKARAC 199
Query: 70 PWAREGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKT 129
++R+G L P + P + G + +Q+ ++ L+ PG+ V D APGGKT
Sbjct: 200 DYSRDGIQLAA-PRDVRELPGFAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKT 258
Query: 130 SYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQL--GIEFDKI 187
+L + + A D++E RL R NL RLG L L + + + G F +I
Sbjct: 259 CHLLETQPELAEVVAVDLEESRLVRVRENLQRLG-LQASLVAADARATGEWWDGKPFQRI 317
Query: 188 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEP 247
LLDAPC+ +G I ++P+ K R +DI LQ +L++ L+ GG+L+Y+TCS+ P
Sbjct: 318 LLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMP 377
Query: 248 EEN-EFVIQWVLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVA 306
EN + + ++ L L G + +P G R+L P V G GF+ A
Sbjct: 378 AENSDSIAAFLARTPGARELDLP-GPWGMKQPHG----------RQLLPQVEGHDGFYYA 426
Query: 307 KIRKL 311
K+ K+
Sbjct: 427 KLIKI 431
>dbj|BAA31227.1| (D86411) Fmv [Vibrio alginolyticus]
Length = 225
Score = 123 bits (307), Expect = 2e-27
Identities = 76/231 (32%), Positives = 118/231 (50%), Gaps = 19/231 (8%)
Query: 82 PFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGV 141
P + P + G + +Q+A++ L P+ GE++ D AAPGGKT+++ + V
Sbjct: 9 PCDVMKLPGFDKGWVSVQDAAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEV 68
Query: 142 IYAFDVDEDRLKETRINLSRLGV-LNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIH 200
+ A D D+ RLK NL RL + V+ + + G +FD+ILLDAPC+ +G I
Sbjct: 69 V-AIDCDDTRLKRVHENLKRLNLQAKVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIR 127
Query: 201 KNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEEN-EFVIQWVLE 259
++P+ KW R DDI LQ ++ + LKPGG +VY+TCS+ P+EN E V ++
Sbjct: 128 RHPDIKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLAR 187
Query: 260 NFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
D +LL SD + R++ P GF+ A + K
Sbjct: 188 TADAQLLD----------------SDPDQPGRQILPGEEDMDGFYYAVLTK 222
>pir||I40649 hypothetical protein 265 - Coxiella burnetii
>gi|511454|gb|AAA56914.1| (U10529) unknown [Coxiella
burnetii]
Length = 265
Score = 123 bits (305), Expect = 3e-27
Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 14/241 (5%)
Query: 44 RINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASS 103
R+N KIS + ++ L++K + + + L + P S+ P + G YIQ+A+
Sbjct: 4 RVNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEK-PCSVHQLPGFNEGYCYIQDAAG 62
Query: 104 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLG 163
+ L + + V D AAPG KTS++ ++ + + A D ++ RL + N++RLG
Sbjct: 63 QFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLG 122
Query: 164 V----LNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQG 219
+ L +L S + G FD+ILLDAPC+ +G I ++P+ K R DI
Sbjct: 123 LRQEHLQCLLADVSQIDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQYHQ 182
Query: 220 LQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLENFD-VELLP--------LKY 270
+++L+ VLK GG L+YSTCS+ P+ENE VI+ L D VEL P LKY
Sbjct: 183 KKLQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLSTHDKVELSPTNVHGGLQLKY 242
Query: 271 G 271
G
Sbjct: 243 G 243
>sp|P36929|SUN_ECOLI SUN PROTEIN (FMU PROTEIN) >gi|7445095|pir||D65121 fmu protein -
Escherichia coli >gi|1772512|emb|CAA71359.1| (Y10307)
sun [Escherichia coli] >gi|2367212|gb|AAC76314.1|
(AE000407) orf, hypothetical protein [Escherichia coli
K12]
Length = 429
Score = 119 bits (296), Expect = 4e-26
Identities = 94/299 (31%), Positives = 141/299 (46%), Gaps = 27/299 (9%)
Query: 18 ERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNK---KGFQFRRVPWARE 74
+R + + E+ I +A + P RIN S + + L++ KGF P A
Sbjct: 151 KRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVR 210
Query: 75 GFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQ 134
P + + P + G + +Q+AS+ L P+ GE + D+ AAPGGKT+++ +
Sbjct: 211 ----LETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 135 LMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIE--FDKILLDAP 192
+ V+ A D+DE RL NL RLG + + Y Q E FD+ILLDAP
Sbjct: 267 VAPEAQVV-AVDIDEQRLSRVYDNLKRLG-MKATVKQGDGRYPSQWCGEQQFDRILLDAP 324
Query: 193 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEF 252
C+ +G I ++P+ KW R DI LQ ++++ LK GG LVY+TCS+ PEEN
Sbjct: 325 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSL 384
Query: 253 VIQWVLE-NFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
I+ L+ D EL E + ++ P GFF AK+ K
Sbjct: 385 QIKAFLQRTADAEL---------------CETGTPEQPGKQNLPGAEEGDGFFYAKLIK 428
>emb|CAA21831.1| (AL033125) 1-evidence=predicted by
content~1-method=genefinder;084~1-evidence_end~2-
evidence=predicted by
match~2-match_accession=SWISS-PROT:P38205~2-
match_description=HYPOTHETICAL 77.9 KD PROTEIN IN
RRN10-MCM2 INTERGENIC REGION.~2-match_species=SACCHA>
Length = 751
Score = 116 bits (289), Expect = 2e-25
Identities = 99/287 (34%), Positives = 142/287 (48%), Gaps = 73/287 (25%)
Query: 90 EYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLM-----ENK---GV 141
E G I QEA SM PP+ LD +P + V DM AAPG KT+ L + + E+K G
Sbjct: 152 ETTAGGISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGF 211
Query: 142 IYAFDVDEDRL-----KETRINLSRLGVLNVILFHSSSLYIDQLG---------IEFDKI 187
+ A DVD +R + R+N L V N H SS++ + + ++FDKI
Sbjct: 212 VLANDVDNNRCYMLVHQAKRLNSPCLLVTN----HDSSVFPNLVTTKPDGSKAILKFDKI 267
Query: 188 LLDAPCTGSGTIHKNPE--RKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSL 245
L D PC+G GT+ KNP+ KWN + G+Q ++V + E+L+ GG LVYSTCSL
Sbjct: 268 LCDVPCSGDGTLRKNPDIWLKWN--LAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSL 325
Query: 246 EPEENEFVIQWVLENFD--VELLP-------LKYGEPALT-------------------- 276
P ENE V+Q ++++ D +EL+ LKY +P +T
Sbjct: 326 NPIENEAVLQRIIKDADGALELVDAGHLVPGLKY-KPGMTDWKLATKEVDQIFTRFEEVP 384
Query: 277 -------RPFGIEL-SDE-----IKKARRLYPDVHGTSGFFVAKIRK 310
RP L +DE ++K R+ P + + GFFVA + K
Sbjct: 385 ESLHTIIRPGMFPLPADEMAKIGLEKCLRVLPHLQDSGGFFVAVLEK 431
>gb|AAF45921.1| (AE003430) EG:EG0007.9 gene product [Drosophila melanogaster]
Length = 746
Score = 116 bits (289), Expect = 2e-25
Identities = 99/287 (34%), Positives = 142/287 (48%), Gaps = 73/287 (25%)
Query: 90 EYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLM-----ENK---GV 141
E G I QEA SM PP+ LD +P + V DM AAPG KT+ L + + E+K G
Sbjct: 152 ETTAGGISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGF 211
Query: 142 IYAFDVDEDRL-----KETRINLSRLGVLNVILFHSSSLYIDQLG---------IEFDKI 187
+ A DVD +R + R+N L V N H SS++ + + ++FDKI
Sbjct: 212 VLANDVDNNRCYMLVHQAKRLNSPCLLVTN----HDSSVFPNLVTTKPDGSKAILKFDKI 267
Query: 188 LLDAPCTGSGTIHKNPE--RKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSL 245
L D PC+G GT+ KNP+ KWN + G+Q ++V + E+L+ GG LVYSTCSL
Sbjct: 268 LCDVPCSGDGTLRKNPDIWLKWN--LAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSL 325
Query: 246 EPEENEFVIQWVLENFD--VELLP-------LKYGEPALT-------------------- 276
P ENE V+Q ++++ D +EL+ LKY +P +T
Sbjct: 326 NPIENEAVLQRIIKDADGALELVDAGHLVPGLKY-KPGMTDWKLATKEVDQIFTRFEEVP 384
Query: 277 -------RPFGIEL-SDE-----IKKARRLYPDVHGTSGFFVAKIRK 310
RP L +DE ++K R+ P + + GFFVA + K
Sbjct: 385 ESLHTIIRPGMFPLPADEMAKIGLEKCLRVLPHLQDSGGFFVAVLEK 431
>gb|AAA58086.1| (U18997) we have one ORF, ECFMT has fmu and fmv [Escherichia coli]
Length = 386
Score = 116 bits (287), Expect = 4e-25
Identities = 81/238 (34%), Positives = 122/238 (51%), Gaps = 11/238 (4%)
Query: 18 ERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNK---KGFQFRRVPWARE 74
+R + + E+ I +A + P RIN S + + L++ KGF P A
Sbjct: 151 KRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVR 210
Query: 75 GFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQ 134
P + + P + G + +Q+AS+ L P+ GE + D+ AAPGGKT+++ +
Sbjct: 211 ----LETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE 266
Query: 135 LMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIE--FDKILLDAP 192
+ V+ A D+DE RL NL RLG + + Y Q E FD+ILLDAP
Sbjct: 267 VAPEAQVV-AVDIDEQRLSRVYDNLKRLG-MKATVKQGDGRYPSQWCGEQQFDRILLDAP 324
Query: 193 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEEN 250
C+ +G I ++P+ KW R DI LQ ++++ LK GG LVY+TCS+ PEEN
Sbjct: 325 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEEN 382
>emb|CAA10711.1| (AJ132604) sunL protein [Lactococcus lactis]
Length = 424
Score = 113 bits (279), Expect = 4e-24
Identities = 77/233 (33%), Positives = 127/233 (54%), Gaps = 17/233 (7%)
Query: 83 FSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVI 142
FSIT E+ TG I IQ+ +S L+ + E V D AAPGGK++++AQ + G I
Sbjct: 203 FSITE--EFQTGRITIQDETSQLVAPQLELEGTEEVLDACAAPGGKSTHMAQYLTT-GHI 259
Query: 143 YAFDVDEDRLKETRINLSRLGVLNVILFHSS--SLYIDQLGIE-FDKILLDAPCTGSGTI 199
A D+ E +L N R V + I + ++ + G E FD+IL+DAPC+G G I
Sbjct: 260 TALDLYEHKLDLINQNAQRQHVADKITTQKADATMIYENFGPEKFDRILVDAPCSGIGLI 319
Query: 200 HKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLE 259
+ P+ ++ + D Q +Q++++ A + LK GI+VYSTC++ EEN V+ LE
Sbjct: 320 RRKPDIRYRKESSDFIDLQKIQLEILNSASKSLKKSGIMVYSTCTIFDEENFDVVHEFLE 379
Query: 260 NF-DVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRKL 311
N + E + + +P + + + ++ P+++ T GFF+AK +K+
Sbjct: 380 NHPNFEQVEISNEKPEVIKEGCLFIT----------PEMYHTDGFFIAKFKKI 422
>pir||B81236 16S RNA methyltransferase NMB0112 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225328|gb|AAF40571.1| (AE002370) 16S RNA
methyltransferase [Neisseria meningitidis MC58]
Length = 419
Score = 112 bits (278), Expect = 5e-24
Identities = 82/284 (28%), Positives = 135/284 (46%), Gaps = 33/284 (11%)
Query: 31 IAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLT-REPFSITSTP 89
IA A++ P R+N + ++ +++L +G + A + + +T E + P
Sbjct: 164 IAAALQSHPPMTLRVNRRHGNAESYLEKLVAEGIAAK----ALDEYAVTLEEAVPVNRLP 219
Query: 90 EYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDE 149
+ G++ +Q+ + L+PK GE + D AAPGGKT ++ +L + + + A D+D
Sbjct: 220 GFSDGIVSVQDFGAQQAAYLLNPKDGERILDACAAPGGKTGHILELADCR--VTALDIDA 277
Query: 150 DRLKETRINLSRLG--VLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKW 207
RLK N++RLG + + L G FD +L D PCT SG +NP+ KW
Sbjct: 278 GRLKRVEDNIARLGFQTASTACADAQDLSAWYDGKPFDAVLADVPCTASGVARRNPDVKW 337
Query: 208 NRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVL-ENFDVELL 266
R D Q L++ +VLK GG ++ +TCS+ EEN+ +Q L + D EL+
Sbjct: 338 LRRPTDALKTARQQEALLDALWQVLKSGGRMLIATCSVFVEENDGQLQKFLNRHADAELI 397
Query: 267 PLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
++R L P+ H GF+ A I+K
Sbjct: 398 ----------------------ESRVLLPNKH-QDGFYYALIQK 418
>pir||A82744 conserved hypothetical protein XF0928 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105851|gb|AAF83738.1|AE003932_2 (AE003932)
conserved hypothetical protein [Xylella fastidiosa]
Length = 421
Score = 111 bits (275), Expect = 1e-23
Identities = 88/297 (29%), Positives = 130/297 (43%), Gaps = 17/297 (5%)
Query: 17 AERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGF 76
AER WGE A I A KP P R+N V+RL G + E
Sbjct: 137 AERIRADWGELAEAIFDASLKPAPMWLRVNLRYGDRHTYVQRLQAAGLEAVPSGLVPEAL 196
Query: 77 CLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLM 136
L + P + G + +Q+ S+ L P P V D AAPGGK ++L +
Sbjct: 197 ALDCS-MPVLQLPGFQAGEVSVQDLSAQQVAALLSPAPHARVLDACAAPGGKAAHLLERA 255
Query: 137 ENKGVIYAFDVDEDRLKETRINLSRLGV-LNVILFHSSSLYIDQLGIEFDKILLDAPCTG 195
+ A DVD RL+ R+ V + + ++ L G FD +LLDAPC+
Sbjct: 256 PTL-CLTALDVDMQRLRRVAETCDRIHVKARLCVADATDLAAWWDGEAFDAVLLDAPCSA 314
Query: 196 SGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQ 255
+G + + P+ +R +D+ +Q +L++ L+PGG+LVY TCS+ EN Q
Sbjct: 315 TGVVRRQPDVLLHRRAEDLLPLLNIQSRLLDACWRTLRPGGVLVYVTCSVLRAEN----Q 370
Query: 256 WVLENFDVELLPLKYGEP--ALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
LE F + +P A +P G+ R+ P G GFF A++ K
Sbjct: 371 TQLEAFLARTVDACAEDPGDAYGQPAGL--------GRQRLPGEQGGDGFFYARLIK 419
>gb|AAD22359.1|AC006592_16 (AC006592) unknown protein [Arabidopsis thaliana]
Length = 837
Score = 110 bits (273), Expect = 2e-23
Identities = 99/332 (29%), Positives = 143/332 (42%), Gaps = 68/332 (20%)
Query: 15 PFAERYYQLWG----ERALRIAQAMEKPLPRCFRINT--------LKISVQNLVKRLNKK 62
P E YY+ G E + + KPLP FR+N+ + I + +K L +
Sbjct: 55 PNFEEYYKKQGIVKAEEWDLFMEILRKPLPAAFRVNSNGQFCDEIISILENDFMKSLQAE 114
Query: 63 GFQ------FRRVPWAREGFCL-------------TREPFSITSTPEYLTGLIYIQEASS 103
+ + +PW + T E F E G I QEA S
Sbjct: 115 AIEGGELEAIKPLPWYPKNLAWHSNFSRKEIRKNQTLERFHEFLKLENEVGNITRQEAVS 174
Query: 104 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMEN--------KGVIYAFDVDEDRLKET 155
M PP+ LD P V DM AAPG KT L +++ G++ A DVD R
Sbjct: 175 MVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVANDVDFKRSNLL 234
Query: 156 RINLSRLGVLNVILFH---------------------SSSLYIDQLGIEFDKILLDAPCT 194
R+ N+I+ + S ++ I+QL FD++L D PC+
Sbjct: 235 IHQTKRMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLA--FDRVLCDVPCS 292
Query: 195 GSGTIHKNPE--RKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEF 252
G GT+ K P+ RKWN M + LQ+ L + L +LK GG ++YSTCS+ P E+E
Sbjct: 293 GDGTLRKAPDIWRKWNSGMGN--GLHSLQIILAMRGLSLLKVGGKMIYSTCSMNPVEDEA 350
Query: 253 VIQWVLENF--DVELLPLKYGEPALTRPFGIE 282
V+ +L VELL + P L R G++
Sbjct: 351 VVAEILRRCGDSVELLDVSDKLPELIRRPGLK 382
>pir||G82009 SUN homolog NMA0162 [imported] - Neisseria meningitidis (group A
strain Z2491) >gi|7378933|emb|CAB83476.1| (AL162752) SUN
homolog [Neisseria meningitidis Z2491]
Length = 419
Score = 109 bits (270), Expect = 4e-23
Identities = 69/228 (30%), Positives = 114/228 (49%), Gaps = 9/228 (3%)
Query: 31 IAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLT-REPFSITSTP 89
IA A++ P R+N + ++ +++L +G + A + + +T E + P
Sbjct: 164 IAAALQSHPPMTLRVNRRHGNAESYLEKLAAEGIAAK----ALDEYAVTLEEAVPVNRLP 219
Query: 90 EYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDE 149
+ G++ +Q+ + L+PK GE + D AAPGGKT ++ +L + + + A D+D
Sbjct: 220 GFSDGIVSVQDFGAQQAAYLLNPKDGERILDACAAPGGKTGHILELADCR--VTALDIDA 277
Query: 150 DRLKETRINLSRLG--VLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKW 207
RLK N++RLG + + L G FD IL D PCT SG +NP+ KW
Sbjct: 278 GRLKRVEDNIARLGFQTASAACADARDLAAWYDGKPFDTILADVPCTASGVARRNPDVKW 337
Query: 208 NRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQ 255
R D Q L++ + LK GG ++ +TCS+ EEN+ +Q
Sbjct: 338 LRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQ 385
>gi|8922322 hypothetical protein FLJ10267 [Homo sapiens]
>gi|7022196|dbj|BAA91515.1| (AK001129) unnamed protein
product [Homo sapiens]
Length = 429
Score = 109 bits (269), Expect = 5e-23
Identities = 95/295 (32%), Positives = 134/295 (45%), Gaps = 25/295 (8%)
Query: 39 LPRCFRINTLKISVQNLVKRLNKKGFQFRRVPW------AREGFCLTREPF--------- 83
LPR R+NTLK ++V ++GF ++ A +G +P
Sbjct: 134 LPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPA 193
Query: 84 --SITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGV 141
+ P Y G + +Q+ +S P + LDP PG V D AAPG KTS+LA L++N+G
Sbjct: 194 QTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGK 253
Query: 142 IYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYI---DQLGIEFDKILLDAPCTGSGT 198
I+AFD+D RL L+R GV L L + D E ILLD C+GSG
Sbjct: 254 IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGM 313
Query: 199 IHKNPERKWNRTMDDIKF--CQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQW 256
+ E T ++ G Q + + AL LVYSTCSL EENE V++
Sbjct: 314 PSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRD 372
Query: 257 VLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRKL 311
L+ + L PA G+ + R P+ +SGFFVA I ++
Sbjct: 373 ALQQ-NPGAFRLAPALPAWPHR-GLSTFPGAEHCLRASPETTLSSGFFVAVIERV 425
>emb|CAA54370.1| (X77091) fmv [Escherichia coli]
Length = 191
Score = 107 bits (265), Expect = 2e-22
Identities = 73/204 (35%), Positives = 103/204 (49%), Gaps = 20/204 (9%)
Query: 110 LDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVIL 169
L P+ GE + D+ AAPGGKT+++ ++ V+ A D+DE RL NL RLG + +
Sbjct: 4 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVV-AVDIDEQRLSRVYDNLKRLG-MKATV 61
Query: 170 FHSSSLYIDQLGIE--FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEK 227
Y Q E FD+ILLDAPC+ +G I ++P+ KW R DI LQ ++++
Sbjct: 62 KQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 121
Query: 228 ALEVLKPGGILVYSTCSLEPEENEFVIQWVLE-NFDVELLPLKYGEPALTRPFGIELSDE 286
LK GG LVY+TCS+ PEEN I+ L+ D EL E
Sbjct: 122 IWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAEL---------------CETGTP 166
Query: 287 IKKARRLYPDVHGTSGFFVAKIRK 310
+ ++ P GFF AK+ K
Sbjct: 167 EQPGKQNLPGAEEGDGFFYAKLIK 190
>pir||C72710 probable fmu protein APE1098 - Aeropyrum pernix (strain K1)
>gi|5104768|dbj|BAA80083.1| (AP000060) 388aa long
hypothetical fmu protein [Aeropyrum pernix]
Length = 388
Score = 107 bits (265), Expect = 2e-22
Identities = 85/234 (36%), Positives = 118/234 (50%), Gaps = 25/234 (10%)
Query: 85 ITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYA 144
++ P + GL+Y Q +SMY ALDP+PG +V D+ AAPGGK S++AQL + VI A
Sbjct: 171 VSELPGFREGLVYGQSVTSMYVARALDPRPGWVVVDLNAAPGGKVSHVAQLAGREAVIVA 230
Query: 145 FDVDE--DRLKETRINLSRLGV--LNVILFHS--SSLYIDQLGIEFDKILLDAPCTGSGT 198
D RL+ET L RLG + V+ S +S + L D +L+D PCT G
Sbjct: 231 IDRPSKVGRLRET---LERLGAGWVRVVGGDSRRASRLLPGLAGRVDAVLVDPPCTNIGV 287
Query: 199 IHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVL 258
I K + K T+ D Q VE+A +L+ GG+L YSTC+L ENE ++
Sbjct: 288 IPKVFDVK---TLRDSAAASRYQWMFVEEAWRLLRRGGLLAYSTCTLSSLENELIVA--- 341
Query: 259 ENFDVELLPLKYGEPALTRPFGIELSDEIKK--ARRLYPDVHGTSGFFVAKIRK 310
E L + LT +G+ S + R P GT GFF+A + K
Sbjct: 342 ---RAEELGFR-----LTWSWGLRPSRGRRSWLGFRWEPHRDGTPGFFLAILEK 387
>pir||T38272 probable NOL1-NOP2-sun family nucleolar protein - fission yeast
(Schizosaccharomyces pombe) >gi|2465159|emb|CAB16888.1|
(Z99753) putative NOL1-NOP2-sun family nucleolar protein
[Schizosaccharomyces pombe]
Length = 674
Score = 107 bits (264), Expect = 2e-22
Identities = 91/293 (31%), Positives = 136/293 (46%), Gaps = 78/293 (26%)
Query: 94 GLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENK-------------- 139
G I QEA SM PP+ LD +P ++ DM AAPG KT+ L + + K
Sbjct: 139 GNINRQEAVSMLPPLFLDVEPHHVILDMCAAPGSKTAQLIEAVYKKANIKDAAHDSKNLK 198
Query: 140 ---GVIYAFDVDEDRLKETRINLSRLGVLNVILF-HSSS----LYI------DQLGI--- 182
G++ A D D R + ++RL N+++ H +S +Y+ D L +
Sbjct: 199 SVEGLVIANDADPKRAQMLVHQINRLNSPNILVVNHDASTMPNIYVKGSSPSDGLNVIEE 258
Query: 183 ----EFDKILLDAPCTGSGTIHKNPE--RKWNRTMDDIKFCQGLQMKLVEKALEVLKPGG 236
+FD+IL D PC+G GT KN R+W + + LQ++++ + L++LK GG
Sbjct: 259 KKILKFDRILADVPCSGDGTFRKNLSLWREW--SANSAFSLHPLQLRILIRGLQLLKVGG 316
Query: 237 ILVYSTCSLEPEENEFVIQWVLEN-------FDV-ELLPL------------------KY 270
LVYSTCS+ P ENE V+ L+ DV + LPL ++
Sbjct: 317 CLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWKVLDDSLNEF 376
Query: 271 GEPALTRPFGIELSD-------------EIKKARRLYPDVHGTSGFFVAKIRK 310
PA IEL++ I++ RLYP + T GFFVA ++K
Sbjct: 377 QSPAENTNDKIELTESMWPLPEEEMSKLHIERCARLYPHMQNTGGFFVAVLQK 429
>gb|AAF51875.1| (AE003599) CG11109 gene product [Drosophila melanogaster]
Length = 358
Score = 106 bits (263), Expect = 3e-22
Identities = 76/235 (32%), Positives = 121/235 (51%), Gaps = 27/235 (11%)
Query: 98 IQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRI 157
+Q S+ LDP+PGE + DM AAPG KTS++A+LM ++G + A D R++
Sbjct: 130 LQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLP 189
Query: 158 NLSRLGVLNVILFHSSSLYIDQLGI--------------EFDKILLDAPCTGSGTIHKNP 203
L + +F+S+ FD+ILLDAPC+G G P
Sbjct: 190 KLGHYKSITAHVFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCSGLG---NRP 246
Query: 204 ERKWN-RTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLENFD 262
+ + + + + +Q +L E+A+++++PGGILVYSTC++ +E E ++ W L F
Sbjct: 247 QLSCSIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAWALRKF- 305
Query: 263 VEL----LPLKYGEPALTRPFGIELSDEIKKARRLYPDVHG--TSGFFVAKIRKL 311
VEL ++G P L P G E + + + +R P T GFF+AK +K+
Sbjct: 306 VELRLTDATPRWGGPGLPLP-GFE-ACKSRLLQRFGPSGANADTVGFFIAKFQKI 358
>gi|6319447 Probable proliferating-cell nucleolar antigen (human p120); Ncl1p
[Saccharomyces cerevisiae]
>gi|586408|sp|P38205|NCL1_YEAST PUTATIVE
METHYLTRANSFERASE NCL1 >gi|626852|pir||S45758
proliferating-cell nucleolar antigen homolog YBL024w -
yeast (Saccharomyces cerevisiae)
>gi|536023|emb|CAA84843.1| (Z35785) ORF YBL024w
[Saccharomyces cerevisiae] >gi|602895|emb|CAA54502.1|
(X77291) homolog of human proliferating-cell nucleolar
protein p120 [Saccharomyces cerevisiae]
Length = 684
Score = 105 bits (259), Expect = 8e-22
Identities = 82/273 (30%), Positives = 119/273 (43%), Gaps = 53/273 (19%)
Query: 90 EYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLM-----ENKGVIYA 144
E G I QEA SM PP+ L+ KP V DM AAPG KT+ L + + E G + A
Sbjct: 141 ENAVGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVA 200
Query: 145 FDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLG-----------IEFDKILLDAPC 193
D D R L RL N+++ + + + ++ ++FD+IL D PC
Sbjct: 201 NDADARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPC 260
Query: 194 TGSGTIHKNPE--RKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENE 251
+G GT+ KN + WN T + +Q+ ++ + L +LK G LVYSTCSL P ENE
Sbjct: 261 SGDGTMRKNVNVWKDWN-TQAGLGL-HAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENE 318
Query: 252 FVIQWVLENF--DVELLPLKYGEPALTRPFGIE-------------LSDE---------- 286
V+ L + + L+ P L R G+ DE
Sbjct: 319 AVVAEALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFSPS 378
Query: 287 --------IKKARRLYPDVHGTSGFFVAKIRKL 311
++ R+YP T GFF+ K+
Sbjct: 379 EEEASKFNLQNCMRVYPHQQNTGGFFITVFEKV 411
>gi|11419358 hypothetical protein FLJ10267 [Homo sapiens]
Length = 382
Score = 103 bits (254), Expect = 3e-21
Identities = 81/239 (33%), Positives = 112/239 (45%), Gaps = 23/239 (9%)
Query: 39 LPRCFRINTLKISVQNLVKRLNKKGFQFRRVPW------AREGFCLTREPF--------- 83
LPR R+NTLK ++V ++GF ++ A +G +P
Sbjct: 134 LPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPA 193
Query: 84 --SITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGV 141
+ P Y G + +Q+ +S P + LDP PG V D AAPG KTS+LA L++N+G
Sbjct: 194 QTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGK 253
Query: 142 IYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYI---DQLGIEFDKILLDAPCTGSGT 198
I+AFD+D RL L+R GV L L + D E ILLD C+GSG
Sbjct: 254 IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGM 313
Query: 199 IHKNPERKWNRTMDDIKF--CQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQ 255
+ E T ++ G Q + + AL LVYSTCSL EENE V++
Sbjct: 314 PSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVR 371
>gb|AAK40701.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus]
Length = 327
Score = 102 bits (251), Expect = 7e-21
Identities = 68/227 (29%), Positives = 112/227 (48%), Gaps = 31/227 (13%)
Query: 85 ITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYA 144
+ PE GLIY+Q +SMY LDP P E + DM A GGK +++ QL E + +
Sbjct: 129 LADLPELKNGLIYVQGKASMYVAHLLDPHPNEKIVDMTAYAGGKLTHIYQL-EPRVKLIG 187
Query: 145 FDVDEDRLKETRINLSRLGV-LNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNP 203
FD E ++++ R +++G+ + + S LY D + DK+++D PC+ G P
Sbjct: 188 FDHTEKKVEKLRDLANKMGMRIEIYKADSRYLYEDYKIGDVDKVVIDPPCSALGI---RP 244
Query: 204 ERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLENFDV 263
+ ++T DI Q + + A ++LK G+++YSTC++ ENE VI
Sbjct: 245 KLYDHKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVI--------- 295
Query: 264 ELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
+P + + I R +P +H +GFF+AK+ K
Sbjct: 296 -------NDPRFSVEYEI----------RFHPHIHEITGFFIAKLIK 325
>emb|CAC05734.1| (AL391744) putative methyltransferase possibily cytidine and tRNAs;
similar to yeast ncl1 [Schizosaccharomyces pombe]
Length = 396
Score = 100 bits (246), Expect = 3e-20
Identities = 84/277 (30%), Positives = 120/277 (42%), Gaps = 67/277 (24%)
Query: 94 GLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMEN------------KGV 141
G I QE+ SM PP+ L+ + V DM AAPG KT+ L + + G+
Sbjct: 123 GDINRQESVSMVPPLLLNVESHHKVLDMCAAPGSKTAQLLEALHKPTKKEDITTLLPSGI 182
Query: 142 IYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGI---------EFDKILLDAP 192
+ A D D R + RL NV++ + + ++ + +FD+IL D P
Sbjct: 183 VIANDSDNKRAHMLVHQIKRLNSPNVLIVNHDASFLPNFHLSSPDGKKFLKFDRILADVP 242
Query: 193 CTGSGTIHKNPERKWNRTMDDIKFCQGL---QMKLVEKALEVLKPGGILVYSTCSLEPEE 249
C+G GT KN WN +K GL Q+K++ + L++L+ GG LVYSTCSL P E
Sbjct: 243 CSGDGTFRKNIAL-WNEW--SLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIE 299
Query: 250 NEFVIQWVLE--NFDVELLPLKYGEPALTRPFGI-------------------------- 281
NE V+ VL V L+ + P L R G+
Sbjct: 300 NEAVVSAVLNATRGSVRLVDVSSELPQLKRSQGVDNWVVCDSDLNIYPSFDTLPKELYEK 359
Query: 282 -----------ELSD-EIKKARRLYPDVHGTSGFFVA 306
EL++ I+ R+YP T GFFVA
Sbjct: 360 MPPTLWPLPKKELAELNIQNCLRIYPHFQNTGGFFVA 396
>gb|AAF73608.1| (AE002350) Nol1/Nop2/Sun family protein [Chlamydia muridarum]
Length = 368
Score = 97.1 bits (238), Expect = 2e-19
Identities = 75/226 (33%), Positives = 110/226 (48%), Gaps = 13/226 (5%)
Query: 26 ERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTREPFSI 85
E A+R+A+ + P R+NT +ISV L + L F A + + +
Sbjct: 116 EEAIRLAKIFLEEAPCSIRVNTRRISVDKLQEVL-----PFSSQRGAAPSSLRFDKRYPL 170
Query: 86 TSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAF 145
T + GL IQ+ SS A+ K + V D A GGK+ AQ ++ +
Sbjct: 171 QHTRAFRRGLFEIQDESSQIITNAILVKDSDTVLDFCAGAGGKSLIFAQRAQH---VTLH 227
Query: 146 DVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPER 205
D L+E R LSR G+ N F +SL + Q G F +++DAPCTGSG ++PE+
Sbjct: 228 DSRPQALEEARQRLSRSGIKN---FTIASLPLKQHG--FSLVVVDAPCTGSGVFRRHPEK 282
Query: 206 KWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENE 251
K + +K Q K++++A + P G LVY TCSL EENE
Sbjct: 283 KLLFSKQLLKNNSVAQGKILKQAQTYVAPRGRLVYITCSLLKEENE 328
>gb|AAK40477.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus]
Length = 368
Score = 95.2 bits (233), Expect = 9e-19
Identities = 79/270 (29%), Positives = 124/270 (45%), Gaps = 20/270 (7%)
Query: 44 RINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTREPFSITSTPEYLTGLIYIQEASS 103
RIN LK + + + L + +F + R ++S + + + +S
Sbjct: 109 RINLLKTDIDKVYRMLESQNIEFEPDKDFYYMIKINRSSVRLSSLSIVKDFKLILHDKAS 168
Query: 104 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLG 163
AL P+ E + D+++APG K S L EN+ + DVD RL + L R G
Sbjct: 169 SIVVEALKPEISEKLVDLSSAPGIKASLYMMLTENRAETFLADVDLKRLSKEYNLLKRCG 228
Query: 164 V----LNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWN-RTMDDIKFCQ 218
V +++I S+ I I+ DKILLDAPC+ SG I+ +P R + I+
Sbjct: 229 VDLRKVHIIYQDSTKNSI----IKSDKILLDAPCSSSGMINNDPSILLKLRNGEKIEKFT 284
Query: 219 GLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLENFDVELLPLKYGEPALTRP 278
LQ L+ +AL++ LVY+ CSL PEE E VI+ E + +P
Sbjct: 285 KLQKSLLNEALKI--KSNKLVYAVCSLFPEEGEKVIEDYYEIAE---------KPFSNYQ 333
Query: 279 FGIELSDEIKKARRLYPDVHGTSGFFVAKI 308
G L K++ R +P + T GFF++ +
Sbjct: 334 SGYSLFKSGKRSNRTFPHIDSTEGFFISTL 363
>pir||A71500 probable RNA methyltransferase - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328993|gb|AAC68155.1| (AE001326)
RNA Methyltransferase [Chlamydia trachomatis]
Length = 325
Score = 90.9 bits (222), Expect = 2e-17
Identities = 74/232 (31%), Positives = 109/232 (46%), Gaps = 13/232 (5%)
Query: 26 ERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTREPFSI 85
E A+R+A+ + P R+NT +ISV L K L F +R A + + +
Sbjct: 73 EEAIRLAKIFLEEAPCSIRVNTRRISVDKLQKVLP---FPCQR--GAAPSSLRFEKRYPL 127
Query: 86 TSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAF 145
T + GL IQ+ SS A+ K + V D A GGK+ AQ + +
Sbjct: 128 QHTRAFRRGLFEIQDESSQIITNAILIKDSDTVLDFCAGAGGKSLIFAQRARH---VTLH 184
Query: 146 DVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPER 205
D L+E R LSR G+ N + S L F +++DAPCTGSG ++PE+
Sbjct: 185 DSRPQALEEARHRLSRSGIKNFTI-PSQPLKKHS----FSLVVVDAPCTGSGVFRRHPEK 239
Query: 206 KWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWV 257
K + + Q +++++AL + P G LVY TCSL EENE W+
Sbjct: 240 KLLFSKQLLHNNSIAQERILKEALAYVAPCGRLVYITCSLMKEENEKHTSWM 291
>gb|AAF51412.1| (AE003587) CG4749 gene product [Drosophila melanogaster]
Length = 503
Score = 87.4 bits (213), Expect = 2e-16
Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 16/186 (8%)
Query: 92 LTGLI--YIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDE 149
+TG++ ++ + +S PP+ L KPGE V D A+PGGK+ + Q + ++ D+ E
Sbjct: 266 MTGVLSHFMMDGASTLPPLFLQVKPGERVLDACASPGGKSLLMLQTLHLDHLV-CNDIQE 324
Query: 150 DRLKETRINLS--------RLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHK 201
RL + R + R +IL S + +DQ +FDKIL+D PCT +
Sbjct: 325 SRLNKLRKVMQEYLFDYKERWAGKRLILSQSDARNLDQYE-QFDKILVDVPCTTDRHVLN 383
Query: 202 NPER---KWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVL 258
+ K R + ++ + LQ ++ L +L+PGG LVYSTCSL P +N+ V+ L
Sbjct: 384 EQDNNIFKPTRIKERLRIPE-LQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMAL 442
Query: 259 ENFDVE 264
+ E
Sbjct: 443 QKVFTE 448
>gi|11545785 hypothetical protein FLJ22609 [Homo sapiens]
>gi|10439061|dbj|BAB15417.1| (AK026262) unnamed protein
product [Homo sapiens]
Length = 340
Score = 86.6 bits (211), Expect = 3e-16
Identities = 66/193 (34%), Positives = 104/193 (53%), Gaps = 13/193 (6%)
Query: 78 LTREPFSITSTPEYLTGL--IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQL 135
L+R P I S + L Y+ A+S+ P +AL+ + GE V D+ AAPGGK+ L Q
Sbjct: 93 LSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQC 152
Query: 136 MENKGVIYAFDVDEDRLKETRINLSRL---GVLNVILFHSSSLYIDQLGIE----FDKIL 188
G ++ + D RL+ R L ++NVI S L ++G FDK+L
Sbjct: 153 A-CPGYLHCNEYDSLRLRWLRQTLESFIPQPLINVIKV--SELDGRKMGDAQPEMFDKVL 209
Query: 189 LDAPCTGSGT-IHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEP 247
+DAPC+ + + + +K + + + LQ++L+ A++ L+PGGILVYSTC+L
Sbjct: 210 VDAPCSNDRSWLFSSDSQKASCRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSK 269
Query: 248 EENEFVIQWVLEN 260
EN+ VI +L +
Sbjct: 270 AENQDVISEILNS 282
>emb|CAB70100.1| (AL132949) contains similarity to Pfam domain: PF01189
(NOL1/NOP2/sun family), Score=57.3, E-value=3e-16, N=2
[Caenorhabditis elegans]
Length = 792
Score = 85.8 bits (209), Expect = 6e-16
Identities = 75/250 (30%), Positives = 116/250 (46%), Gaps = 34/250 (13%)
Query: 96 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKET 155
+ +Q+ +S P L+P+PG V D AAPG KTS+ A +MEN+G ++A D DR+
Sbjct: 539 LILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAIMENQGKVWAMDRAADRVATM 598
Query: 156 RINLSRLGVLNVILFHSSSLYIDQLGIEFDKI---LLDAPCTGSGTIHK-------NPER 205
+ L V F L D +F K+ ++D PC+GSG + + N E+
Sbjct: 599 KQLLDASKVAIASSFCGDFLKTDVTDKKFSKVKFAIVDPPCSGSGIVKRMDEITGGNAEK 658
Query: 206 ---------KWNRTMDDIKFC--------QGLQMKLVEKALEVLK-----PG-GILVYST 242
+ ++ +D +K C + KL+E +LK PG VYST
Sbjct: 659 ERLEKLKNLQVHKNLDLLKMCWKCSENCFKKKTKKLIENDAMILKHALKLPGLKRAVYST 718
Query: 243 CSLEPEENEFVIQWV-LENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTS 301
CS+ EENE V+ V L+ + + LK G++ + + R P V T+
Sbjct: 719 CSVHEEENEQVVDEVLLDTYVRQNYVLKKNVLPEWTYRGLKTYEVGEHCLRANPKVTLTN 778
Query: 302 GFFVAKIRKL 311
GFFVA ++
Sbjct: 779 GFFVAVFERV 788
>emb|CAB70101.1| (AL132949) contains similarity to Pfam domain: PF01189
(NOL1/NOP2/sun family), Score=57.3, E-value=3e-16,
N=2~cDNA EST yk65h1.3 comes from this gene~cDNA EST
yk65h1.5 comes from this gene~cDNA EST yk274e1.3 comes
from this gene~cDNA EST yk478h4.3 comes>
Length = 469
Score = 85.8 bits (209), Expect = 6e-16
Identities = 75/250 (30%), Positives = 116/250 (46%), Gaps = 34/250 (13%)
Query: 96 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKET 155
+ +Q+ +S P L+P+PG V D AAPG KTS+ A +MEN+G ++A D DR+
Sbjct: 216 LILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAIMENQGKVWAMDRAADRVATM 275
Query: 156 RINLSRLGVLNVILFHSSSLYIDQLGIEFDKI---LLDAPCTGSGTIHK-------NPER 205
+ L V F L D +F K+ ++D PC+GSG + + N E+
Sbjct: 276 KQLLDASKVAIASSFCGDFLKTDVTDKKFSKVKFAIVDPPCSGSGIVKRMDEITGGNAEK 335
Query: 206 ---------KWNRTMDDIKFC--------QGLQMKLVEKALEVLK-----PG-GILVYST 242
+ ++ +D +K C + KL+E +LK PG VYST
Sbjct: 336 ERLEKLKNLQVHKNLDLLKMCWKCSENCFKKKTKKLIENDAMILKHALKLPGLKRAVYST 395
Query: 243 CSLEPEENEFVIQWV-LENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTS 301
CS+ EENE V+ V L+ + + LK G++ + + R P V T+
Sbjct: 396 CSVHEEENEQVVDEVLLDTYVRQNYVLKKNVLPEWTYRGLKTYEVGEHCLRANPKVTLTN 455
Query: 302 GFFVAKIRKL 311
GFFVA ++
Sbjct: 456 GFFVAVFERV 465
>pir||F75306 probable sun protein - Deinococcus radiodurans (strain R1)
>gi|6459968|gb|AAF11717.1|AE002050_3 (AE002050) sun
protein, putative [Deinococcus radiodurans]
Length = 439
Score = 85.0 bits (207), Expect = 1e-15
Identities = 71/236 (30%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 84 SITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIY 143
S+ +T ++ G +S+ AL G V D+A G K + LA +
Sbjct: 225 SLRATRAFMQGQAQPINPASLACVDALGDVAGVRVLDLAGGMGIKAAMLAT---RGAEVT 281
Query: 144 AFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNP 203
+ DV + R NL RLG+ L H + +D +LLDAPCTGSGT+ +P
Sbjct: 282 SVDVVARKHDAARANLKRLGLHAEFLTHDLTTPLDLPPAP--AVLLDAPCTGSGTLRSHP 339
Query: 204 ERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVL---EN 260
E K T D + LQ +++ A ++ PGG+LVYS CS+ +E V+ L
Sbjct: 340 EIKLRLTPDAVAEAAALQAQMLPNAAALVAPGGVLVYSVCSVTKQEGPGVVADFLAAHPE 399
Query: 261 FDVELLP------LKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAKIRK 310
F E +P + G LT P G G GFF+A++RK
Sbjct: 400 FQPESVPELDVPHVAAGAGVLTVPLG------------------GVDGFFIARLRK 437
>sp|P71675|YE07_MYCTU HYPOTHETICAL 48.5 KDA PROTEIN RV1407 >gi|7445108|pir||D70901
probable fmu protein - Mycobacterium tuberculosis
(strain H37RV) >gi|1542915|emb|CAB02186.1| (Z80108) fmu
[Mycobacterium tuberculosis]
Length = 457
Score = 84.7 bits (206), Expect = 1e-15
Identities = 62/195 (31%), Positives = 92/195 (46%), Gaps = 15/195 (7%)
Query: 120 DMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGV--LNVILFHSSSLYI 177
D+ A PGGKT+ LA L G+ A V R +L L V L +
Sbjct: 274 DLCAGPGGKTALLAGL----GLQCAARVTAVEPSPHRADLVAQNTRGLPVELLRVDGRHT 329
Query: 178 DQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGI 237
D L FD++L+DAPCTG G + + PE +W R D+ LQ +L+ A+ + +PGG+
Sbjct: 330 D-LDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAALAKLQRELLSAAIALTRPGGV 388
Query: 238 LVYSTCSLEPEENEFVIQWVLENFDVELLPLK-YGEPALTRPFGIELSDEIKKARRLYPD 296
++Y+TCS E + L V L + EP + G+ + +L+P
Sbjct: 389 VLYATCSPHLAETVGAVADALRRHPVHALDTRPLFEPVIA---GLGEGPHV----QLWPH 441
Query: 297 VHGTSGFFVAKIRKL 311
HGT F A +R+L
Sbjct: 442 RHGTDAMFAAALRRL 456
>pir||F72048 RNA methyltransferase - Chlamydophila pneumoniae (strain CWL029)
>gi|4376975|gb|AAD18813.1| (AE001650) RNA
Methyltransferase [Chlamydophila pneumoniae CWL029]
>gi|8163359|gb|AAF73625.1| (AE002170) Nol1/Nop2/Sun
family protein [Chlamydophila pneumoniae AR39]
>gi|8979046|dbj|BAA98881.1| (AP002547) RNA
methyltransferase [Chlamydophila pneumoniae J138]
Length = 364
Score = 81.9 bits (199), Expect = 9e-15
Identities = 70/252 (27%), Positives = 115/252 (44%), Gaps = 20/252 (7%)
Query: 26 ERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTREPFSI 85
E+A IA+ P R+NT KISV+ L ++L ++ P + +
Sbjct: 116 EQAEEIAKIWLTEAPITIRVNTDKISVKELQEKL-----EYPSSPGELPEALHFSKRHPL 170
Query: 86 TSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAF 145
ST + G IQ+ +S + +IV D A GGK+ AQ ++ +
Sbjct: 171 QSTEAFRRGFFEIQDENSQRISQGISLTDKDIVLDFCAGAGGKSLIFAQKAKH---VVIN 227
Query: 146 DVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGI-EFDKILLDAPCTGSGTIHKNPE 204
D + L+ + L R G N L DQL + F +++DAPC+G+G ++PE
Sbjct: 228 DSRKAILQTAKHRLLRAGARNFSL-------ADQLRLGSFSVVIVDAPCSGTGVFRRHPE 280
Query: 205 RKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWV----LEN 260
KW + + +Q ++++A + P G LVY TCSL EENE + ++ +
Sbjct: 281 HKWQFSKKLLLNYVRVQKSILKQASAYVGPRGRLVYITCSLLKEENEAHVAYMHSLGWKE 340
Query: 261 FDVELLPLKYGE 272
+ LPL+ G+
Sbjct: 341 VHRKTLPLQVGK 352
>emb|CAB76894.1| (AL159139) hypothetical protein SCL6.29c [Streptomyces coelicolor
A3(2)]
Length = 475
Score = 80.4 bits (195), Expect = 3e-14
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 14/131 (10%)
Query: 184 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTC 243
FD++L+D PCTG G + + PE +W R +D+ LQ L+ ALE ++ GG++ Y+TC
Sbjct: 353 FDRVLVDVPCTGLGALRRRPEARWRRRPEDLDGFAPLQRGLLRNALEAVRVGGVVAYATC 412
Query: 244 SLEPEENEFVIQWVLENF-DVELL---PLKYGEPALTRPFGIELSDEIKKARRLYPDVHG 299
S E V+ VL+ ELL PL G P L ++ L+P VHG
Sbjct: 413 SPHLAETRAVVTDVLKQHPGTELLDARPLLPGVPGLGEGPDVQ----------LWPHVHG 462
Query: 300 TSGFFVAKIRK 310
T ++A +R+
Sbjct: 463 TDAMYLALLRR 473
>dbj|BAB13875.1| (AK021688) unnamed protein product [Homo sapiens]
Length = 315
Score = 76.1 bits (184), Expect = 5e-13
Identities = 73/231 (31%), Positives = 105/231 (44%), Gaps = 14/231 (6%)
Query: 89 PEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVD 148
P Y G + +Q+ +S P + LDP+ + KTS+LA L++N+G I+AFD+D
Sbjct: 17 PLYRAGHLILQDRASCLPAMLLDPRRAPMSWMPVPPQAIKTSHLAALLKNQGKIFAFDLD 76
Query: 149 EDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDK---ILLDAPCTGSGTIHKNPER 205
RL L+ GV L L + L + + +LLD C+GSG + E
Sbjct: 77 ARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCSGSGMPSRQLEE 136
Query: 206 KWNRTMDDIKF--CQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVL-ENFD 262
T ++ G Q + + AL LVYS CSL EENE ++Q L +N D
Sbjct: 137 PGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSMCSLCQEENEDMVQDALQQNPD 195
Query: 263 VELLPLKYGEPAL-TRPF-GIELSDEIKKARRLYPDVHGTSGFFVAKIRKL 311
L PAL RP G+ + R P + GFFVA I ++
Sbjct: 196 AFRL-----APALPARPHRGLSTFPGAEHCLRASPKTTLSGGFFVAVIERV 241
>gb|AAF55642.1| (AE003725) CG5558 gene product [alt 1] [Drosophila melanogaster]
Length = 433
Score = 73.7 bits (178), Expect = 3e-12
Identities = 79/306 (25%), Positives = 129/306 (41%), Gaps = 34/306 (11%)
Query: 36 EKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFCLTREPFSITSTPEYLTGL 95
++P PR RINT S+ + L+K ++ + +P A + + E++T L
Sbjct: 124 KEPNPRYVRINTNLYSLAEALDYLHKSDWRRKELP-ADASYADFLTAIKSLAENEFMTDL 182
Query: 96 --------------------------IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKT 129
+Q ++ L P G V DM AAPG KT
Sbjct: 183 HVEGVLIFPAKWSNYWVRHPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPGMKT 242
Query: 130 SYLAQLMENKGVIYAFDVDEDRLKETRINLSR---LGVLNVILFHSSSLYIDQLGIEFDK 186
++ +M+NKG IY+ + D R T +++ ++ IL + +L ++ + +
Sbjct: 243 VHICNVMQNKGCIYSVEQDHVRY-NTLCEITKDAGCDIVKPILGDALNLTPERFP-DVEY 300
Query: 187 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLE 246
IL+D C+GSG ++ + ++ QGLQ+K++ A+ + Y TCSL
Sbjct: 301 ILVDPSCSGSGMQNRMTVCDEPKEDKRLQKLQGLQIKILSHAMGAFPNVKRIAYCTCSLW 360
Query: 247 PEENEFVIQWVLE-NFDVELLPLKYGEPALTRPFGIELSDEI-KKARRLYPDVHGTSGFF 304
EENE V+Q L+ N +LL K G + I K PD T G F
Sbjct: 361 KEENEQVVQRCLQLNPSFKLLSCKKALRNKWHNVGDKDYPNIGKNVLYCQPDSDLTDGIF 420
Query: 305 VAKIRK 310
+A K
Sbjct: 421 LALFEK 426
>pir||T38517 hypothetical protein SPAC2C4.06c - fission yeast
(Schizosaccharomyces pombe) >gi|2414617|emb|CAB16366.1|
(Z99259) hypothetical protein [Schizosaccharomyces
pombe]
Length = 455
Score = 71.8 bits (173), Expect = 1e-11
Identities = 82/310 (26%), Positives = 124/310 (39%), Gaps = 48/310 (15%)
Query: 34 AMEKP--LPRCFRINTLKISVQNL--------VKRLNKKGFQFRRVPWAREGFCLTREPF 83
A++ P LPR RINT+K + + V + + G + E F
Sbjct: 118 ALKNPVSLPRWLRINTIKSTKDEVLQGLGLDKVSSIEELGPDKFYIDDCVENLIAIDPSF 177
Query: 84 SITSTPEYLTGLIYIQEASSMYPPVALDPKPGEI--VADMAAAPGGKTSYLAQLMENKGV 141
I Y G + IQ+ +S +P L G + + D AAPG KT++LA K
Sbjct: 178 PIVENSLYKEGKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSH 236
Query: 142 IYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYID---QLGIEFDKILLDAPCTGSGT 198
I+AF+ D R++ R + G NV + H D L ILLD C+GSG
Sbjct: 237 IFAFERDAKRVQTLRKMVGISGANNVTIEHQDFTLTDPKSDLYRNVTHILLDPSCSGSGI 296
Query: 199 IHKNPERKWNR--TMDDIKFCQGL---QMKLVEKALEVLKPGGILVYSTCSLEPEENEFV 253
+ + N +D + + L Q +++ AL+ + YSTCS+ ENE V
Sbjct: 297 VSRQDYLLGNEQDVTEDTERLENLCSFQSTILKHALQFPNCRHV-TYSTCSVHRLENEQV 355
Query: 254 I--------QW-------VLENFDVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDVH 298
+ W L N+ +P +P++ + R P
Sbjct: 356 VCEVLSQEPDWKCNSLTKTLPNWKTRGIPEYCAQPSMA-----------EGMIRCKPGAG 404
Query: 299 GTSGFFVAKI 308
GT GFFVA +
Sbjct: 405 GTIGFFVANL 414
>gb|AAF55643.1| (AE003725) CG5558 gene product [alt 2] [Drosophila melanogaster]
Length = 383
Score = 71.8 bits (173), Expect = 1e-11
Identities = 64/218 (29%), Positives = 101/218 (45%), Gaps = 7/218 (3%)
Query: 98 IQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRI 157
+Q ++ L P G V DM AAPG KT ++ +M+NKG IY+ + D R T
Sbjct: 161 LQNKATCLAAELLAPPSGATVLDMCAAPGMKTVHICNVMQNKGCIYSVEQDHVRY-NTLC 219
Query: 158 NLSR---LGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSGTIHKNPERKWNRTMDDI 214
+++ ++ IL + +L ++ + + IL+D C+GSG ++ + +
Sbjct: 220 EITKDAGCDIVKPILGDALNLTPERFP-DVEYILVDPSCSGSGMQNRMTVCDEPKEDKRL 278
Query: 215 KFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLE-NFDVELLPLKYGEP 273
+ QGLQ+K++ A+ + Y TCSL EENE V+Q L+ N +LL K
Sbjct: 279 QKLQGLQIKILSHAMGAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALR 338
Query: 274 ALTRPFGIELSDEI-KKARRLYPDVHGTSGFFVAKIRK 310
G + I K PD T G F+A K
Sbjct: 339 NKWHNVGDKDYPNIGKNVLYCQPDSDLTDGIFLALFEK 376
>gi|11416925 hypothetical protein FLJ20303 [Homo sapiens]
Length = 559
Score = 70.6 bits (170), Expect = 2e-11
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 13/131 (9%)
Query: 140 GVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIE---------FDKILLD 190
G + A DVD R RL +++ + + I +L I+ +D+IL D
Sbjct: 1 GFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCD 60
Query: 191 APCTGSGTIHKNPE--RKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPE 248
PC+G GT+ KN + +KW T++ ++ GLQ+++ + E L GG +VYSTCSL P
Sbjct: 61 VPCSGDGTMRKNIDVWKKWT-TLNSLQL-HGLQLRIATRGAEQLAEGGRMVYSTCSLNPI 118
Query: 249 ENEFVIQWVLE 259
E+E VI +LE
Sbjct: 119 EDEAVIASLLE 129
>pir||T06106 hypothetical protein T5J17.170 - Arabidopsis thaliana
>gi|4490751|emb|CAB38913.1| (AL035708)
proliferating-cell nucleolar antigen-like protein
[Arabidopsis thaliana] >gi|7271055|emb|CAB80663.1|
(AL161596) proliferating-cell nucleolar antigen-like
protein [Arabidopsis thaliana]
Length = 682
Score = 69.5 bits (167), Expect = 5e-11
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Query: 177 IDQLGIEFDKILLDAPCTGSGTIHKNPE--RKWNRTMDDIKFCQGLQMKLVEKALEVLKP 234
IDQL FD++L D PC+G GT+ K P+ R+WN + LQ+ L + L +LK
Sbjct: 168 IDQL--LFDRVLCDVPCSGDGTLRKAPDIWRRWNSGSGN--GLHSLQVVLAMRGLSLLKV 223
Query: 235 GGILVYSTCSLEPEENEFVIQWVLE--NFDVELLPLKYGEPALTRPFGI 281
GG +VYSTCS+ P E+E V+ +L VEL+ + P L R G+
Sbjct: 224 GGRMVYSTCSMNPIEDEAVVAEILRRCGCSVELVDVSDKLPELIRRPGL 272
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.417
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119182646
Number of Sequences: 2977
Number of extensions: 4998442
Number of successful extensions: 14268
Number of sequences better than 1.0e-10: 82
Number of HSP's better than 0.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 14006
Number of HSP's gapped (non-prelim): 98
length of query: 311
length of database: 189,106,746
effective HSP length: 53
effective length of query: 258
effective length of database: 157,386,935
effective search space: 40605829230
effective search space used: 40605829230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)