BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0531 (PAB0531) DE:Hypothetical protein
         (154 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75123 hypothetical protein PAB0531 - Pyrococcus abyssi (st...   322  1e-87
pir||B71008 hypothetical protein PH1360 - Pyrococcus horikoshii ...   239  1e-62

>pir||C75123 hypothetical protein PAB0531 - Pyrococcus abyssi (strain Orsay)
           >gi|5458211|emb|CAB49700.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 154
           
 Score =  322 bits (817), Expect = 1e-87
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MKVKVIKPIFKLSNNFNDKKFILYPYWIFHLKLFYKRIVGGDKVFDYFAYIDAYRFGAER 60
           MKVKVIKPIFKLSNNFNDKKFILYPYWIFHLKLFYKRIVGGDKVFDYFAYIDAYRFGAER
Sbjct: 1   MKVKVIKPIFKLSNNFNDKKFILYPYWIFHLKLFYKRIVGGDKVFDYFAYIDAYRFGAER 60

Query: 61  GVKFLELEEWDVPENVVMEYLVNEEEAERKAIESAIIWGNSRVISWWLPRVEVIRKEKAY 120
           GVKFLELEEWDVPENVVMEYLVNEEEAERKAIESAIIWGNSRVISWWLPRVEVIRKEKAY
Sbjct: 61  GVKFLELEEWDVPENVVMEYLVNEEEAERKAIESAIIWGNSRVISWWLPRVEVIRKEKAY 120

Query: 121 KVFWISDDFIIDSLTGEKVPLKELRKSYKGSNNK 154
           KVFWISDDFIIDSLTGEKVPLKELRKSYKGSNNK
Sbjct: 121 KVFWISDDFIIDSLTGEKVPLKELRKSYKGSNNK 154


>pir||B71008 hypothetical protein PH1360 - Pyrococcus horikoshii
           >gi|3257783|dbj|BAA30466.1| (AP000006) 154aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 154
           
 Score =  239 bits (604), Expect = 1e-62
 Identities = 109/154 (70%), Positives = 131/154 (84%), Gaps = 1/154 (0%)

Query: 1   MKVKVIKPIFKLSNNFNDKKFILYPYWIFHLKLFYKRIVGGDKVFDYFAYIDAYRFGAER 60
           M VKV+KP+FKLS   +  KFILYPYWIF L+LFYKR+   D+V DYFAY+DAYR G ER
Sbjct: 1   MIVKVMKPVFKLSEE-SSAKFILYPYWIFQLRLFYKRLGMRDRVIDYFAYVDAYRLGVER 59

Query: 61  GVKFLELEEWDVPENVVMEYLVNEEEAERKAIESAIIWGNSRVISWWLPRVEVIRKEKAY 120
           G + +E+EEWDVP+N +ME+LV+EEEA +KAIESAIIWGNSR+ISWWLPRVE++RKEK Y
Sbjct: 60  GDRLIEIEEWDVPKNTIMEFLVDEEEARKKAIESAIIWGNSRIISWWLPRVEIVRKEKVY 119

Query: 121 KVFWISDDFIIDSLTGEKVPLKELRKSYKGSNNK 154
           KVFWI ++FI+DSLTGEK  +KELRK YKGSN K
Sbjct: 120 KVFWIGNEFIVDSLTGEKYAIKELRKIYKGSNIK 153


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.142    0.438 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61266901
Number of Sequences: 2977
Number of extensions: 2496802
Number of successful extensions: 5073
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5070
Number of HSP's gapped (non-prelim): 2
length of query: 154
length of database: 189,106,746
effective HSP length: 49
effective length of query: 105
effective length of database: 159,780,883
effective search space: 16776992715
effective search space used: 16776992715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)