BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0532 (PAB0532) DE:PUTATIVE FORMATE DEHYDROGENASE
(637 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75123 probable formate dehydrogenase PAB0532 - Pyrococcus ... 1308 0.0
pir||A71008 hypothetical protein PH1359 - Pyrococcus horikoshii ... 1130 0.0
pir||G69895 formate dehydrogenase homolog yoaE - Bacillus subtil... 343 4e-93
dbj|BAB06572.1| (AP001516) formate dehydrogenase [Bacillus halod... 308 1e-82
pir||C75525 molybdopterin oxidoreductase - Deinococcus radiodura... 281 2e-74
sp|P37519|YYAE_BACSU HYPOTHETICAL 73.9 KD PROTEIN IN RPSF-SPO0J ... 277 2e-73
pir||B69076 catalytic subunit of nitrate reductase (flp) - Metha... 234 3e-60
pir||C71007 probable formate dehydrogenase (EC 1.2.1.2) alpha ch... 225 1e-57
pir||E75124 formate dehydrogenase alpha chain related protein PA... 223 5e-57
gi|11498802 molybdopterin oxidoreductase, molybdopterin binding ... 201 3e-50
pir||B69074 probable formate dehydrogenase (EC 1.2.1.2) alpha ch... 199 8e-50
pir||B75061 alpha chain of formate dehydrogenease PAB1389 - Pyro... 196 9e-49
pir||I40449 hypothetical protein 6 (replication origin region) -... 194 3e-48
gb|AAK41292.1| Formate dehydrogenase Alpha subunit (fdhF-1) [Sul... 193 4e-48
gb|AAK43290.1| Formate dehydrogenase (Amino end fragment) [Sulfo... 192 1e-47
pir||A59348 formate dehydrogenase (EC 1.2.1.2) alpha chain MJ135... 191 2e-47
pir||S57430 probable formate dehydrogenase (EC 1.2.1.2) alpha ch... 189 7e-47
pir||S03785 dimethylsulfoxide reductase (EC 1.8.-.-) chain A pre... 189 9e-47
sp|P18775|DMSA_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAI... 189 9e-47
sp|P45004|DMSA_HAEIN ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAI... 183 6e-45
pir||I40028 nitrate reductase (narB) - Bacillus subtilis (fragme... 178 1e-43
sp|P42434|NASC_BACSU ASSIMILATORY NITRATE REDUCTASE CATALYTIC SU... 178 1e-43
gb|AAB06233.1| (U26665) dimethyl sulphoxide reductase subunit A ... 178 2e-43
pir||F64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A2 pr... 175 1e-42
sp|P77783|YNFF_ECOLI PUTATIVE DIMETHYL SULFOXIDE REDUCTASE CHAIN... 175 1e-42
pir||E64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A1 pr... 175 2e-42
gb|AAD37319.1|AF135170_10 (AF135170) dimethyl sulfoxide reductas... 173 4e-42
pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaero... 164 3e-39
sp|Q57366|DMSA_RHOSH DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMS... 164 4e-39
gb|AAB94874.1| (AF016236) DMSO/TMAO-reductase [Rhodobacter sphae... 163 5e-39
gb|AAB18330.1| (U73807) formate dehydrogenase alpha subunit [Moo... 163 5e-39
emb|CAA64689.1| (X95407) dimethyl sulfoxide/trimethylamine N-oxi... 162 1e-38
pdb|1DMS| Structure Of Dmso Reductase 162 1e-38
sp|Q52675|DMSA_RHOCA DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMS... 161 2e-38
dbj|BAB04334.1| (AP001509) assimilatory nitrate reductase (catal... 160 4e-38
gb|AAK42934.1| Formate dehydrogenase Alpha subunit (fdhF-2) [Sul... 159 9e-38
pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buf... 159 1e-37
pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes - S... 159 1e-37
gb|AAC44820.1| (U52681) FdhA [Methanobacterium thermoformicicum] 159 1e-37
pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rh... 158 2e-37
pir||S66263 dimethyl sulfoxide reductase - Rhodobacter sphaeroid... 157 4e-37
pdb|4DMR| Reduced Dmso Reductase From Rhodobacter Capsulatus W... 157 5e-37
sp|P06131|FDHA_METFO FORMATE DEHYDROGENASE ALPHA CHAIN >gi|80907... 156 6e-37
gb|AAC13660.1| (U25037) dimethyl sulfoxide reductase [Rhodobacte... 155 1e-36
sp|P44798|BISC_HAEIN PROBABLE BIOTIN SULFOXIDE REDUCTASE (BDS RE... 155 2e-36
prf||2117158A DMSO reductase [Rhodobacter sphaeroides] 152 9e-36
pir||B70320 nitrate reductase (EC 1.7.99.4) chain A narB - Aquif... 151 2e-35
pir||G64570 biotin sulfoxide reductase (EC 1.8.4.-) - Helicobact... 148 2e-34
emb|CAC11193.1| (AL445063) probable formate dehydrogenase, alpha... 143 6e-33
sp|P31075|PSRA_WOLSU POLYSULFIDE REDUCTASE CHAIN A PRECURSOR (SU... 143 6e-33
emb|CAA06794.1| (AJ005974) trimethylamine-N-oxide reductase [She... 143 8e-33
gb|AAC43173.1| (U00006) formate dehydrogenase-H alpha subunit [E... 141 2e-32
sp|P07658|FDHF_ECOLI FORMATE DEHYDROGENASE H (FORMATE-HYDROGEN-L... 141 2e-32
pir||H71865 probable s/n-oxide reductase - Helicobacter pylori (... 140 4e-32
gb|AAG37855.1|AF298190_5 (AF298190) NAD-dependent formate dehydr... 140 5e-32
pdb|1FDO| Oxidized Form Of Formate Dehydrogenase H From E. Col... 140 5e-32
gb|AAA23754.1| (M13563) formate dehydrogenase [Escherichia coli] 140 5e-32
gi|11499961 molybdopterin oxidoreductase, molybdopterin binding ... 139 7e-32
emb|CAC11567.1| (AL445064) formate dehydrogenase related protein... 139 9e-32
gb|AAD13462.1| (AE000481) selenopolypeptide subunit of formate d... 139 1e-31
pir||H64468 formate dehydrogenase (EC 1.2.1.2) alpha chain - Met... 138 2e-31
sp|O87948|TORA_SHEMA TRIMETHYLAMINE-N-OXIDE REDUCTASE PRECURSOR ... 138 2e-31
gb|AAB80862.1| (U93874) formate dehydrogenase chain A [Bacillus ... 138 3e-31
pir||D69974 formate dehydrogenase homolog yrhE - Bacillus subtil... 138 3e-31
pir||S57966 NarB protein - Oscillatoria chalybea >gi|2147816|pir... 134 3e-30
gb|AAB40292.1| (L49163) narB [Anabaena PCC7120] 131 3e-29
emb|CAA11235.1| (AJ223295) NAD-dependent formate dehydrogenase a... 129 7e-29
pir||S47772 biotin sulfoxide reductase (EC 1.-.-.-) 1 - Escheric... 129 1e-28
sp|P20099|BISC_ECOLI BIOTIN SULFOXIDE REDUCTASE 1 (BDS REDUCTASE... 129 1e-28
pir||G82168 trimethylamine-N-oxide reductase VC1692 [imported] -... 129 1e-28
dbj|BAA74791.1| (AB017192) nitrate reductase catalytic subunit [... 129 1e-28
gb|AAB94932.1| (AF039208) putative formate dehydrogenase alpha s... 128 2e-28
sp|P37600|PHSA_SALTY THIOSULFATE REDUCTASE PRECURSOR >gi|2126173... 128 2e-28
pir||G81444 molybdopterin-containing oxidoreductase Cj0264c [imp... 128 2e-28
pir||H82137 biotin sulfoxide reductase VC1950 [imported] - Vibri... 127 4e-28
sp|P33225|TORA_ECOLI TRIMETHYLAMINE-N-OXIDE REDUCTASE PRECURSOR ... 127 5e-28
pir||S34222 trimethylamine-N-oxide reductase (EC 1.6.6.9) - Esch... 126 6e-28
pir||H64949 biotin sulfoxide reductase (EC 1.-.-.-) 2 - Escheric... 122 1e-26
sp|P46923|BISZ_ECOLI BIOTIN SULFOXIDE REDUCTASE 2 (BDS REDUCTASE... 122 1e-26
sp|P73448|NARB_SYNY3 NITRATE REDUCTASE >gi|7431434|pir||S77385 n... 122 1e-26
gb|AAA23522.1| (M34827) biotin sulfoxide reductase (bisC) [Esche... 118 2e-25
pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From D... 117 3e-25
gb|AAC44131.1| (U38839) biotin sulfoxide reductase [Escherichia ... 116 7e-25
sp|P81186|NAPA_DESDE PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 115 1e-24
emb|CAB71267.1| (AL138598) putative oxidoreductase. [Streptomyce... 115 1e-24
emb|CAB69761.1| (AL137187) putative reductase [Streptomyces coel... 115 2e-24
gb|AAD45942.1|AF089813_5 (AF089813) nitrate reductase [Synechoco... 110 4e-23
pir||A83424 assimilatory nitrate reductase PA1779 [imported] - P... 109 7e-23
pir||B83307 probable molybdopterin oxidoreductase PA2714 [import... 108 2e-22
sp|P39458|NARB_SYNP7 NITRATE REDUCTASE >gi|480267|pir||S36605 ni... 107 5e-22
gb|AAA25100.2| (L06800) nitrate reductase large subunit [Klebsie... 106 6e-22
pir||E70916 probable bisC protein - Mycobacterium tuberculosis (... 106 1e-21
gb|AAA16399.1| (U00008) yojC [Escherichia coli] 104 2e-21
pir||S18213 formate dehydrogenase (EC 1.2.1.2) chain A - Wolinel... 104 2e-21
dbj|BAA15989.1| (D90850) Probable nitrate reductase (EC 1.7.99.4... 103 5e-21
sp|P33937|NAPA_ECOLI PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi... 103 5e-21
pir||C81298 probable formate dehydrogenase (EC 1.2.1.2) large ch... 102 9e-21
emb|CAA61224.1| (X87971) fdhA2 [Methanobacterium thermoautotroph... 101 2e-20
emb|CAB73932.1| (AL139078) putative formate dehydrogenase large ... 100 6e-20
sp|P54934|BISC_RHOSH BIOTIN SULFOXIDE REDUCTASE (BDS REDUCTASE) ... 98 4e-19
emb|CAA03851.1| (AJ000006) nitrate reductase [Shewanella frigidi... 98 4e-19
pir||B70838 hypothetical protein Rv0197 - Mycobacterium tubercul... 94 6e-18
gi|11497793 molybdopterin oxidoreductase, molybdopterin binding ... 93 8e-18
pir||D82430 periplasmic nitrate reductase VCA0678 [imported] - V... 91 4e-17
gb|AAG19284.1| (AE005024) dimethylsulfoxide reductase; DmsA [Hal... 90 5e-17
pir||E70406 DMSO reductase chain A - Aquifex aeolicus >gi|298367... 78 2e-13
gb|AAK41791.1| Molybdopterin oxidoreductase, molybdopterin bindi... 75 3e-12
emb|CAA38512.1| (X54696) formate dehydrogenase H [Enterobacter a... 73 1e-11
dbj|BAA15689.1| (D90830) Biotin sulfoxide reductase 2 (EC 1.-.-.... 72 2e-11
>pir||D75123 probable formate dehydrogenase PAB0532 - Pyrococcus abyssi (strain
Orsay) >gi|5458212|emb|CAB49701.1| (AJ248285) PUTATIVE
FORMATE DEHYDROGENASE [Pyrococcus abyssi]
Length = 637
Score = 1308 bits (3349), Expect = 0.0
Identities = 637/637 (100%), Positives = 637/637 (100%)
Query: 1 MFSACMRDCYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPL 60
MFSACMRDCYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPL
Sbjct: 1 MFSACMRDCYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPL 60
Query: 61 IKEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLN 120
IKEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLN
Sbjct: 61 IKEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLN 120
Query: 121 ASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFAKRNN 180
ASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFAKRNN
Sbjct: 121 ASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFAKRNN 180
Query: 181 LEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEF 240
LEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEF
Sbjct: 181 LEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEF 240
Query: 241 KNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILP 300
KNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILP
Sbjct: 241 KNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILP 300
Query: 301 ALVGHRFGFIYDMKTIDKSYAEAKFLRTKPELRIPQMELTEAIEDGRVKFLYIYNSNPLA 360
ALVGHRFGFIYDMKTIDKSYAEAKFLRTKPELRIPQMELTEAIEDGRVKFLYIYNSNPLA
Sbjct: 301 ALVGHRFGFIYDMKTIDKSYAEAKFLRTKPELRIPQMELTEAIEDGRVKFLYIYNSNPLA 360
Query: 361 SYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYVLLN 420
SYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYVLLN
Sbjct: 361 SYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYVLLN 420
Query: 421 EPVAKGPGKSNSEVTRLIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGFVKIP 480
EPVAKGPGKSNSEVTRLIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGFVKIP
Sbjct: 421 EPVAKGPGKSNSEVTRLIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGFVKIP 480
Query: 481 EGERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPLRLLSPTYRMTVTSQYHNTHG 540
EGERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPLRLLSPTYRMTVTSQYHNTHG
Sbjct: 481 EGERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPLRLLSPTYRMTVTSQYHNTHG 540
Query: 541 IIDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKLLG 600
IIDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKLLG
Sbjct: 541 IIDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKLLG 600
Query: 601 WNVNFLTTDKKVEKYGKGSAFHSTWVEVIRCGEPGVK 637
WNVNFLTTDKKVEKYGKGSAFHSTWVEVIRCGEPGVK
Sbjct: 601 WNVNFLTTDKKVEKYGKGSAFHSTWVEVIRCGEPGVK 637
>pir||A71008 hypothetical protein PH1359 - Pyrococcus horikoshii
>gi|3257782|dbj|BAA30465.1| (AP000006) 639aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 639
Score = 1130 bits (2891), Expect = 0.0
Identities = 530/632 (83%), Positives = 588/632 (92%), Gaps = 4/632 (0%)
Query: 1 MFSACMRDCYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPL 60
MFSACMRDCYDTCSI+SE +NGKLIV+GNP+HPIT+GFLCPKGALLPRWFHS +RLK PL
Sbjct: 4 MFSACMRDCYDTCSIMSEIKNGKLIVRGNPDHPITQGFLCPKGALLPRWFHSNERLKSPL 63
Query: 61 IKEG----DEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLF 116
++EG ++F E SW +A++L+ EKL+E IKEYGSES+LVYKYAGDRG+VNYYFPMRLF
Sbjct: 64 VREGKRGDEDFKEVSWGEALTLIKEKLQETIKEYGSESILVYKYAGDRGIVNYYFPMRLF 123
Query: 117 HYLNASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFA 176
HYLNASTID GICDRAGQEALKDIYGTAVG+DPEK+KEHKL+VYWGINAFWTNLHGFM A
Sbjct: 124 HYLNASTIDSGICDRAGQEALKDIYGTAVGMDPEKIKEHKLLVYWGINAFWTNLHGFMLA 183
Query: 177 KRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYG 236
K+ N+EIWTVDVVRTETAKRSDKFFQ+RPDTDVLFALGVAKV+IEE LYD+DFV +NVYG
Sbjct: 184 KKGNVEIWTVDVVRTETAKRSDKFFQIRPDTDVLFALGVAKVIIEEELYDKDFVTKNVYG 243
Query: 237 FEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAI 296
FEEFKNYV +LSLNYVSQETG++ E I+EFAREF EK+GIIHIGYGFQRSLAGGEAVRA+
Sbjct: 244 FEEFKNYVTRLSLNYVSQETGIKPERIKEFAREFTEKRGIIHIGYGFQRSLAGGEAVRAV 303
Query: 297 AILPALVGHRFGFIYDMKTIDKSYAEAKFLRTKPELRIPQMELTEAIEDGRVKFLYIYNS 356
AILP LVGH+FGFIYDMKTIDKSYAE KFLRTKPE +IPQMELT+ IE +KFLYIYNS
Sbjct: 304 AILPVLVGHKFGFIYDMKTIDKSYAEGKFLRTKPENKIPQMELTKVIESDDIKFLYIYNS 363
Query: 357 NPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRY 416
NPLASYPNQNRLR+AL+K+D+FVVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRY
Sbjct: 364 NPLASYPNQNRLRRALKKSDVFVVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRY 423
Query: 417 VLLNEPVAKGPGKSNSEVTRLIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGF 476
VLLNEPVAKGPGKSNSEVTRLIAK+LGI+ PYLYESDE+VIRKVLEAN ISFEELK++GF
Sbjct: 424 VLLNEPVAKGPGKSNSEVTRLIAKSLGIRVPYLYESDEDVIRKVLEANGISFEELKRRGF 483
Query: 477 VKIPEGERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPLRLLSPTYRMTVTSQYH 536
+K+PEG R W TPSGKIEFYSQRAV RGL PFPEYKKFKGKYPLRLL+PT+RMT+TSQYH
Sbjct: 484 IKVPEGPRNWKTPSGKIEFYSQRAVSRGLGPFPEYKKFKGKYPLRLLTPTHRMTITSQYH 543
Query: 537 NTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWV 596
THGIID NLYMNP+DA RGIKDGD+V VFNENG++ TK+K+TEDVP GVV+LYKAFW
Sbjct: 544 TTHGIIDPNLYMNPEDAKVRGIKDGDKVGVFNENGRVITKVKITEDVPKGVVILYKAFWP 603
Query: 597 KLLGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
KLLGWN NFLTTD+KVEKYGKGSAFHSTWVEV
Sbjct: 604 KLLGWNANFLTTDEKVEKYGKGSAFHSTWVEV 635
>pir||G69895 formate dehydrogenase homolog yoaE - Bacillus subtilis
>gi|2618996|gb|AAB84420.1| (AF027868) putative formate
dehydrogenase [Bacillus subtilis]
>gi|2634251|emb|CAB13750.1| (Z99114) similar to formate
dehydrogenase [Bacillus subtilis]
Length = 677
Score = 343 bits (870), Expect = 4e-93
Identities = 208/627 (33%), Positives = 326/627 (51%), Gaps = 42/627 (6%)
Query: 3 SACMRDCYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLI 61
S C DC D C ++ ++GK++ V+G+P+HP+T G +C K + + + RL PL
Sbjct: 14 SVCSLDCPDQCGLLIHKKDGKIVKVQGDPDHPVTAGNICNKVRNMTERIYDEKRLTTPLK 73
Query: 62 KEGDE----FNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYY-FPMRLF 116
+ G + F SW +AI + + K++I E G+ES+L Y + G+ G + R F
Sbjct: 74 RTGAKGQAIFEPISWKEAIDTITSRWKQLIDEEGAESILPYSFYGNMGKLTAEGMDRRFF 133
Query: 117 HYLNASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFA 176
+ + +S ++ IC +AG E K G + G+DPE+ KL ++WGINA TN+H A
Sbjct: 134 YRMGSSQLERTICSKAGSEGYKYTMGISAGIDPEETVHTKLFIFWGINAVSTNMHQITIA 193
Query: 177 ---KRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVREN 233
++ +I +DV + +T + +D F ++P TD ALG+ ++ +ENL+DE F+ E
Sbjct: 194 QKARKKGAKIVVIDVHKNQTGRLADWFIPIKPGTDSALALGIMHILFKENLHDEAFLSEY 253
Query: 234 VYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKK-GIIHIGYGFQRSLAGGEA 292
G+EE + +V + VS TGV E+I A+ + E I IG G Q GG
Sbjct: 254 TVGYEELREHVKQYDPEKVSTITGVSTEDIYRLAKMYGETSPSFIRIGNGPQHHDNGGMI 313
Query: 293 VRAIAILPALVG-----------HRFGFI-YDMKTIDKSYAEAKFLRTKPELRIPQMELT 340
VR IA LPA+ G H G + Y+ + + + RT + Q+
Sbjct: 314 VRTIACLPAITGQWLHTGGGAIKHNSGILEYNTNALQRP--DLLKGRTPRSFNMNQLGRV 371
Query: 341 EAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPAN 400
D ++ L+IY +NP P N++R+ L + D+F V HD+FLT+TA ++D+VLPA
Sbjct: 372 LLETDPPIRSLFIYGTNPAVVAPEANKVRQGLLREDLFTVVHDLFLTETAAYADIVLPAT 431
Query: 401 TFFERLDIVDSYYHRYVLLNEPVAK--GPGKSNSEVTRLIAKALGIKNPYLYESDEEVIR 458
+ FE D SY+H Y+ L +PV + G KSN+EV RL+A+A+G + L +SDE +IR
Sbjct: 432 SAFENTDFYTSYWHHYIQLQQPVIERYGESKSNTEVFRLLAEAMGFTDQELKDSDEVLIR 491
Query: 459 KVLE------ANRISFEELKKKGFVKI----PEGERKWNTPSGKIEFYSQRAVKRGLSPF 508
+ L+ I ++ L K F+K P + TPSGKIE YS++ + G
Sbjct: 492 QALDHPDNPHLAEIDYDSLTKHSFMKAKREKPLFPGELPTPSGKIELYSEKMKQDGFPAL 551
Query: 509 PEYKKF--KGKYPLRLLSPTYRMTVTSQYHNTHGII----DSNLYMNPKDAAERGIKDGD 562
P Y ++P + + S + N I L++N KDA + GI DG
Sbjct: 552 PTYTPLVTDNEHPFMYVPGPNHNFLNSTFSNNEKHIKLEKTPKLFINTKDAEKHGIVDGA 611
Query: 563 EVIVFNENGKIKTKIKLTEDVPPGVVL 589
V ++N G+ + + E V PGVV+
Sbjct: 612 PVRIWNSRGECELTAAVGEQVLPGVVV 638
>dbj|BAB06572.1| (AP001516) formate dehydrogenase [Bacillus halodurans]
Length = 614
Score = 308 bits (780), Expect = 1e-82
Identities = 200/609 (32%), Positives = 325/609 (52%), Gaps = 42/609 (6%)
Query: 59 PLIKEGDE----FNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVV-NYYFPM 113
PLI+ G++ F SW++A+S++ ++ + +I ++L Y Y+G G++ N
Sbjct: 4 PLIRTGEKGSGAFKPISWERALSIIVDRFEAIIASANPTAILPYSYSGTIGIIQNGSMDR 63
Query: 114 RLFHYLNASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGF 173
R FH L A+T++ IC AG EA + G +VG+ PE+ + L++ WG N TN+H +
Sbjct: 64 RFFHRLGAATLERTICAAAGTEAFRYTMGASVGLQPEETRFANLVIVWGSNLVVTNVHQW 123
Query: 174 MF---AKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFV 230
++ A++ ++ +DV RTETA+++D F Q++P TD+ ALG+ V+IEE L + F+
Sbjct: 124 LYILEARKRGAKVIVIDVERTETARQADWFIQIKPGTDLELALGIQHVLIEEELINGSFI 183
Query: 231 RENVYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREF-AEKKGIIHIGYGFQRSLAG 289
GF E +V SL+ V + TG+ E+I+ AR + EK+ I IG G Q +G
Sbjct: 184 ERQTVGFRELAAHVATYSLDRVERMTGINKEDIQRLARMYGTEKRSFIRIGNGQQHHHSG 243
Query: 290 GEAVRAIAILPALVG----HRFGFIY-DMK--TIDKSYAEAKFLRTKPELRIPQMELTEA 342
G + RAI LPAL G G IY ++K LRT E R+ EL +
Sbjct: 244 GMSTRAILSLPALTGAWEAKGGGAIYFNLKHGEYSSDILHRPDLRTNEERRVNMNELGKV 303
Query: 343 I--EDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPAN 400
+ + + L++YNSNP + P+Q ++ + L ++++FVV H+ LTDTA F+D+VLPA
Sbjct: 304 LLSQQEPILALFVYNSNPASVAPDQRKVLQGLARDNLFVVVHEQQLTDTAKFADIVLPAT 363
Query: 401 TFFERLDIVDSYYHRYVLLNEPVAK--GPGKSNSEVTRLIAKALGIKNPYLYESDEEVIR 458
TF E D+ SY+H Y L V G KSN+E+ R++A A + ++DE +++
Sbjct: 364 TFLEHDDVYRSYWHPYWQLGRRVISPIGQSKSNTELFRMLANAFHFQELCFRDNDETLMK 423
Query: 459 KVLEANR----------ISFEELKKKGFVKIPEGERKW-----NTPSGKIEFYSQRAVKR 503
+ + + +S + ++ K + W TPSGKIE YS+ +
Sbjct: 424 QAIFGDSSVDSGVWEQFLSGKPIRWKPTHLSAQQIEPWKIGEYETPSGKIELYSEAMHEA 483
Query: 504 GLSPFPE---YKKFKGKYPLRLLSPTYRMTVTSQYHNTHGIIDSNLYMNPKDAAERGIKD 560
GL P PE YK+ Y L ++SP+ R + SQ+ + + ++ +DA GI D
Sbjct: 484 GLPPLPEKIPYKQAAAPYQL-IISPS-RKGLNSQFIE-YAKGKPVVQLSKEDAMREGIYD 540
Query: 561 GDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKLLGWNVNFLT-TDKKVEKYGKGS 619
GD V +FN++G++ ++E GV++ +W NF T T + +G G+
Sbjct: 541 GDRVCLFNDHGQLTCTANVSEACQQGVIIARGVWWHHQHEQQGNFNTLTGGDLSDFGGGA 600
Query: 620 AFHSTWVEV 628
F ST+V+V
Sbjct: 601 TFFSTYVQV 609
>pir||C75525 molybdopterin oxidoreductase - Deinococcus radiodurans (strain R1)
>gi|6458074|gb|AAF09974.1|AE001899_4 (AE001899)
molybdopterin oxidoreductase [Deinococcus radiodurans]
Length = 697
Score = 281 bits (711), Expect = 2e-74
Identities = 200/679 (29%), Positives = 341/679 (49%), Gaps = 73/679 (10%)
Query: 5 CMRDCYDTCSI---ISEFRNGK---LIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKL 58
C DC D C + I +G + + G+P HP TRGF C K P + +R
Sbjct: 34 CPLDCPDACRLKITIERQPDGSEKAVKLTGDPAHPYTRGFACAKTVHYPARQNHPERPLY 93
Query: 59 PLIKEGD------EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFP 112
PL + ++ +WD+A+ +A +L+++I E G +S+L Y YAG+ G++
Sbjct: 94 PLRRVNPKTDPEPQWERVTWDEALDDIAGRLRQLIAERGPQSILPYHYAGNMGLLEGSHV 153
Query: 113 MRLFHYLNASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLH- 171
L+ L A+ ++ IC AG A + YGT + VDP + +LIV WGIN+ T+ H
Sbjct: 154 HALWRALGAAELEETICASAGTAAWEVGYGTRLAVDPLDVPHARLIVLWGINSLSTHSHL 213
Query: 172 --GFMFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDF 229
A++N + VD R TA +D+ ++RP TD ALGV + + D ++
Sbjct: 214 TPQITAARKNGARVVCVDPYRNRTAAFADEHLKIRPGTDAALALGVMRELFVNGWTDAEY 273
Query: 230 VRENVYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREF-AEKKGIIHIGYGFQRSLA 288
+ + G ++ + + S ++ TG+ +E+R+FAR + I +GYG R
Sbjct: 274 LAQATEGVDDLRAAAEEWSPQRTAEVTGLTADEVRDFARLIGTTRPTYIRVGYGMTRYEN 333
Query: 289 GGEAVRAIAILPALVG---HRFG---------FIYDMKTIDKSYAEAKFLRTKPEL-RIP 335
G A+RA+ +LPAL G +R G F + + + ++ T+PE R+
Sbjct: 334 GATALRAVTLLPALTGDWRYRGGGCVMSTSGTFKLNRRRLGAAHV------TRPEAPRVN 387
Query: 336 QMELTEAIEDGRVKF--LYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFS 393
EL A+ D V F L++YN NP P+ R+R +R++D+ VV + +T++A +
Sbjct: 388 MNELANAL-DPAVGFGALFVYNCNPAVVSPDSGRVRAGMRRDDLLVVVLEQAMTESARLA 446
Query: 394 DVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPG--KSNSEVTRLIAKALGIKNPYLYE 451
D VLPA TF E D+ SY H ++ N PG + NS V +A+ LG++ P +Y
Sbjct: 447 DYVLPATTFMESPDLYTSYGHFWLGYNPAELTPPGECRPNSWVFAELARRLGVEEPSVYW 506
Query: 452 SDEEVIRKVLEANR-----ISFEELKKKGFVK--IPEGERKW----NTPSGKIEFYSQRA 500
+ ++++ ++L+ + ++ E LK +G V+ +P+G + TPSGK++
Sbjct: 507 TADDLMAELLDTDHPFLDGLTPERLKAEGTVRLNVPDGFLPYAYGAETPSGKVQ------ 560
Query: 501 VKRGLSPFPEY----KKFKGKYPLRLLSPTYRMTVTSQYHNTHGII-----DSNLYMNPK 551
L+P P + + +PLRLL+P + S Y N + + + + P
Sbjct: 561 ----LAPAPRFVPVQAELNADFPLRLLTPPAHHFLNSTYGNLGNLNRAEGGEPQVLLCPA 616
Query: 552 DAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKLL--GWNVNFLTTD 609
DAA G++DG+ + +E G+++ ++K+T+ PGV ++ +W G ++N LT
Sbjct: 617 DAAASGVQDGEYARLTSEQGEVRRRVKVTDAAQPGVAVVEGTWWGLTAPDGRSINELTA- 675
Query: 610 KKVEKYGKGSAFHSTWVEV 628
+ + G GS FH+T + V
Sbjct: 676 QTLTDLGGGSTFHNTRIRV 694
>sp|P37519|YYAE_BACSU HYPOTHETICAL 73.9 KD PROTEIN IN RPSF-SPO0J INTERGENIC REGION
>gi|2127016|pir||S66017 formate dehydrogenase homolog
yyaE - Bacillus subtilis >gi|467377|dbj|BAA05223.1|
(D26185) unknown [Bacillus subtilis]
>gi|2636640|emb|CAB16130.1| (Z99124) similar to formate
dehydrogenase [Bacillus subtilis]
Length = 667
Score = 277 bits (702), Expect = 2e-73
Identities = 210/659 (31%), Positives = 321/659 (47%), Gaps = 52/659 (7%)
Query: 3 SACMRDCYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLI 61
SAC +C+D+C + +GK+ V G+P HPIT G +C +G +L +S DRL+ P+
Sbjct: 7 SACPLNCWDSCGFLVTVDDGKVTKVDGDPNHPITEGKICGRGRMLETKTNSPDRLRYPMK 66
Query: 62 KEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLN 120
K+ EF SW++A+ +A+KL+E IKE + +++ + + R F+ Y
Sbjct: 67 KQNGEFVRISWEQALDEIADKLRE-IKETSETTAVLHSHDYANNGLLKALDQRFFNGYGG 125
Query: 121 ASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFMF---AK 177
+ I G IC +G EA +G + G P + K +V WG N TN+H + K
Sbjct: 126 VTEIVGSICWGSGIEAQSWDFGRSYGHGPLDIYNSKHVVVWGRNVSRTNMHLYHHLQQVK 185
Query: 178 RNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGF 237
+ I +D + TAK +D++ V+P D A V KV+IE DE F+ E+ GF
Sbjct: 186 KKGATITVIDPIFNPTAKLADRYISVKPGMDGWLAAAVLKVLIEMGRTDETFISEHSVGF 245
Query: 238 EEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIA 297
++ K + +SL +T +EE+ A +A+ +G G QR GG +R I
Sbjct: 246 DDVKELLKTVSLEEFIVKTETSMEELEYLAGLYADGPVSTFMGLGMQRYKNGGGTIRWID 305
Query: 298 ILPALVGH----RFGFIYDMKTIDKSYAEAKFLRTKPELR--------IPQMELTEAIED 345
L A G+ G + I +S+A+ K T PEL+ + Q E D
Sbjct: 306 ALVAASGNVGIKGGGANFGNVQIGESFAKTKL--TLPELKTTSRSFSMMTQAEEVLTAAD 363
Query: 346 GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFER 405
++ + + NPL PN N++R+A K + V D +TDTA D VLP T FE
Sbjct: 364 PAIEMIIVTCGNPLTQVPNTNKVRQAFEKVPM-TVAIDSIMTDTAELCDYVLPTATVFEE 422
Query: 406 LDI-VDSYYHRYVLLNEPVA--KGPGKSNSEVTRLIAKALGIKNPYLYESDE--EVIRKV 460
DI S YH YV + + +G KS+S + +AK LG + Y + E E+
Sbjct: 423 EDIYYSSMYHHYVQYGKKLVEPQGEAKSDSWIWSELAKRLGFGELFEYSTQEFLEMGLSS 482
Query: 461 LEANRISFEELKKKGFVKIPEGERKWN-----TPSGKIEFYSQRAVKRGLS-----PFPE 510
LEA ++ E LK+KG + +P + W+ TPSGK EF S A ++G S PE
Sbjct: 483 LEAEDVTLERLKEKGHLPLPVKQVPWDDYQFLTPSGKFEFTSSLAEQKGFSGSLQLNVPE 542
Query: 511 YKKF-----KGKYPLRLLSPTYRMTVTSQY-----HNTHGIIDSNLYMNPKDAAERGIKD 560
F GKYP LLS + + SQ+ H +D ++P AA + ++D
Sbjct: 543 ESVFHNEELAGKYPYTLLSIHPQRSNHSQHVPFIEKLQHVQVD----ISPDIAAGQDLQD 598
Query: 561 GDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKLLGWNVNFLTTDKKVEKYGKGS 619
GDEV++FN+ G +K K+K+ + + + + W G +VN LT D + G GS
Sbjct: 599 GDEVVIFNDRGSMKGKVKVMKQAHAKTINIDEGMWA-AFGGSVNALTNDTNSDN-GMGS 655
>pir||B69076 catalytic subunit of nitrate reductase (flp) - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622690|gb|AAB86041.1| (AE000917) catalytic subunit
of nitrate reductase (flp) [Methanobacterium
thermoautotrophicum]
Length = 666
Score = 234 bits (590), Expect = 3e-60
Identities = 182/657 (27%), Positives = 325/657 (48%), Gaps = 47/657 (7%)
Query: 1 MFSACMRDCYDTCSIISEFRNGKL-IVKGNPEHPITRGFLCPKGALLP-RWFHSKDRLKL 58
+ + C RDC +C + GK+ ++G+ HP TRGF+C A R +S R+
Sbjct: 3 VLTTCTRDCPGSCGLTVNVSRGKVNSIEGSSIHPHTRGFICKNTARYHVRRLYSDRRVLK 62
Query: 59 PLIKEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHY 118
PL ++G ++ SWD+A+ ++++KL E + E+G+ES++ Y+ G R + R F+
Sbjct: 63 PLKRDGRQWKTISWDEALHVISDKLNECMDEHGAESIVYYQGFGARTALRL-LNRRFFNL 121
Query: 119 LNASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFAKR 178
+ A+T+ G +C A A +G + DP + I WG N T+++ + KR
Sbjct: 122 IGATTLRGTLCGGAAIAAQSKDFGRRLSHDPSDHLNSRNIFIWGRNPAVTDINLWRIIKR 181
Query: 179 ---NNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVY 235
+ + T+D +RT+TA +SD Q+ D+ A+ +AK+++ E L+D F+ ++
Sbjct: 182 AQKHGTRVITIDPIRTQTAVKSDIHCQIEAGKDLYLAIAMAKIIMAEELHDSGFIEKHAE 241
Query: 236 GFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRA 295
F+ + + + +LN +S+ +GV ++ I + A +++ I +G+G QR A R
Sbjct: 242 NFDSYIEILDEFNLNQLSELSGVPLKIISKLAHLYSDGPSSIILGWGLQRYFNSYMACRF 301
Query: 296 IAILPALVGH--------RFGFIYDMKTIDKSYA-EAKFLRTKPELRIPQMELTEAIEDG 346
I L A+ G+ GF + D+S E K + + E+ +
Sbjct: 302 IDALAAISGYIGVSGGGVSSGFD-EYGAFDESVTLEGAGNGRKVSMPLFGREIVN-MNSP 359
Query: 347 RVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERL 406
V ++I NP+ PN + ALR+ D FVV D+FL DTA +D+ LPA TF E
Sbjct: 360 TVNCVFITAGNPVTLGPNSIQTLNALREVD-FVVMVDLFLNDTAHTADLFLPATTFLEET 418
Query: 407 DIVDSYYHRYVLLNEPVAKGPGKSNSE--VTRLIAKALGIKN--PYLYESDEEVIRKVLE 462
D+V SY H YV K G+S+SE + + +++ +G + E E + KVL+
Sbjct: 419 DLVGSYGHPYVSPVNAAVKPLGESHSEFWILQRLSEIMGFADMEGTRMEWLEIIASKVLD 478
Query: 463 ANRISFEELKKK-----GFVKIPEGERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGK 517
+ I +L +K GF +P + T +G+ S R P+ E ++ G
Sbjct: 479 YHGIEICDLLEKPYRSPGFPPVPFEGPLFYTDNGRFNLPSDR-------PY-EMEQHDGA 530
Query: 518 YP------LRLLSPTYRMTVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENG 571
+P L ++SP + +V +H G+++ +Y+NP ++ G DG+ + + G
Sbjct: 531 HPENSIRLLTVMSPQWVGSVEPTFHK--GLVE--IYLNPGTLSQLGFNDGEISVAESNAG 586
Query: 572 KIKTKIKLTEDVPPGVVLLYKAFWVKLLGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
K ++ +EDV P L ++ W+ G +N + D++ G G+A++ T +++
Sbjct: 587 KSCVIVRSSEDVHPLCALSFRGTWLS-KGGCINTVIEDRET-IMGHGTAYNETRIKL 641
>pir||C71007 probable formate dehydrogenase (EC 1.2.1.2) alpha chain -
Pyrococcus horikoshii >gi|3257776|dbj|BAA30459.1|
(AP000006) 679aa long hypothetical formate dehydrogenase
[Pyrococcus horikoshii]
Length = 679
Score = 225 bits (568), Expect = 1e-57
Identities = 203/651 (31%), Positives = 312/651 (47%), Gaps = 84/651 (12%)
Query: 9 CYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFN 68
C C+++ + ++ + VK P P RG LCPKG SKDRLK PL KEG+ F
Sbjct: 16 CGFGCNLLIDPKSRR--VKPYPGEP-NRGKLCPKGLYALEHVFSKDRLKHPLKKEGESFR 72
Query: 69 ETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID--G 126
SW+KAIS ++ KLKE+I++YG S+ + NY ++ L + +D
Sbjct: 73 RISWEKAISEISTKLKEIIEDYGPGSIAFIASSKVTNEENYLI-QKIARLLGTNNVDNCA 131
Query: 127 GICDRAGQEALKDIYGTAVGVDP-EKLKEHKLIVYWGINAFWTN---LHGFMFAKRNNLE 182
+C + ALK G V +P L+ I+ WG N T+ + + AKR +
Sbjct: 132 RLCHESSVHALKLTLGDGVQTNPYSDLERFGAIMIWGYNPAETHPVVMQYILGAKRRGGK 191
Query: 183 IWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKN 242
I +D+ T T + +D ++P TD+ A + V+IE NLY+++FV GF E +
Sbjct: 192 IIVIDIRETLTMRFADYRLVIKPGTDITLANAIMNVIIEGNLYNKEFVESRTTGFSEIRM 251
Query: 243 YVIKLSLNYVSQETGVEVEEIREFAREFAEK-KGIIHIGYGFQRSLAGGEAVRAIAILPA 301
V K + Y + TGV E IRE A FA+ G I G G + ++G E V A+ +
Sbjct: 252 GVKKYTPEYAEKVTGVPAELIREVAEVFAKAGSGAIMWGMGITQQISGVENVLALVDIAL 311
Query: 302 LVGH--RFGFIYDMK------------TIDK------SYAEAKFLRTKPEL----RIPQ- 336
L+G+ G +Y M+ T+ + +++KF R ++ +P
Sbjct: 312 LLGYFGEKGGLYPMRGQNNVQGAAYMGTLSEFLPGYIPLSDSKFRRKVAKMWGVEDLPTE 371
Query: 337 -----MELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTAL 391
E +AI G +K LYI NP S N ++RKAL K D+ VV D+FLT TA
Sbjct: 372 RGFYLTEYWDAILKGDLKALYIVGENPAVSDANALKVRKALTKLDLLVV-QDLFLTKTAR 430
Query: 392 FSDVVLPANTFFERLDIVDSYYH--RYVLLNEPVAKGPGKSNS--EVTRLIAKALGIKNP 447
F+ +LPA F E+ SY + R + + V PG+S E+ ++A+ALG+K
Sbjct: 431 FAHYILPAAAFCEK---EGSYMNSERRIQWSFKVCDPPGESKPDWEILVMLARALGLKG- 486
Query: 448 YLYESDEEVIRKVLE-----ANRISFEELKKKGFVKIPEGE---RKWNTPSGKIEFYSQR 499
+ Y E++ R+ + NR S EELK +G + IP +NT GK F +
Sbjct: 487 FDYSKVEDITREYFKLFPALRNR-SIEELKARGII-IPAPRLYVDSFNTHDGKARFVAVE 544
Query: 500 AVKRGLSPFPEYKKFKGKYPLRLLSPTYRMTVTSQYHNTHGII-----------DSNLYM 548
+ P G+YPL L T R+ ++NT + +S +++
Sbjct: 545 QIMPWEEP-------NGEYPLIL--TTVRLI---NHYNTGEMTRRSPSLAKMSGESVVFI 592
Query: 549 NPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKLL 599
+ +DA E GI+DGD VIV G ++ K K+ + + GV+ + F LL
Sbjct: 593 SREDAREYGIEDGDYVIVETRRGSLRLKAKIAK-IQKGVIAIPFHFDANLL 642
>pir||E75124 formate dehydrogenase alpha chain related protein PAB2442 -
Pyrococcus abyssi (strain Orsay)
>gi|5458221|emb|CAB49710.1| (AJ248285) FORMATE
DEHYDROGENASE ALPHA SUBUNIT related protein [Pyrococcus
abyssi]
Length = 665
Score = 223 bits (562), Expect = 5e-57
Identities = 203/640 (31%), Positives = 289/640 (44%), Gaps = 85/640 (13%)
Query: 27 KGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLVAEKLKEM 86
KG P RG LCPKG + SKDRL+ PL K G +F WD AI +A KL+E+
Sbjct: 34 KGEPN----RGKLCPKGLHALEFVLSKDRLRYPLKKVGSDFVRIGWDDAIREIASKLREI 89
Query: 87 IKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTIDG--GICDRAGQEALKDIYGTA 144
+ YG ++ + NY ++ L + ID +C A ALK G
Sbjct: 90 KERYGPNAIAFIASSKVSNEENYLL-QKIARLLGTNNIDNCARLCHEASVHALKMTLGAG 148
Query: 145 VGVDP-EKLKEHKLIVYWGINAFWTN---LHGFMFAKRNNLEIWTVDVVRTETAKRSDKF 200
V +P L+ K I+ WG N T+ + + AKR +I +DV T T + +D
Sbjct: 149 VQTNPYSDLENFKAIMIWGYNPAETHPVVMDYILNAKRKGAKIIVIDVRETTTMRLADYK 208
Query: 201 FQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEV 260
+ P TD+ A + V+I E LYD++FVR GF E K V K + Y + TG+E
Sbjct: 209 LMINPGTDITLANALMNVIISEGLYDKEFVRSRTVGFSEVKMAVKKYTPEYAEKVTGIEA 268
Query: 261 EEIREFAREFAEK-KGIIHIGYGFQRSLAGGEAVRAIAILPALVGH--RFGFIYDMK--- 314
+ IRE AREFA+ G I G G + ++G E V A+ + L+G+ G +Y M+
Sbjct: 269 KLIREVAREFAKAGSGAIMWGMGLTQHVSGVENVIAVIDMALLLGYVGDKGGLYPMRGQN 328
Query: 315 ------------------------TIDKSYAEAKFLRTKP-ELRIPQMELTEAIEDGRVK 349
T K A + P E + EL +AI +G VK
Sbjct: 329 NVQGAAYMGALSEFLPGYVPLTDSTFRKRVASLWGVEDIPTERGLYLTELWDAILEGEVK 388
Query: 350 FLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIV 409
LYI NP S N ++RKAL+K ++ VV D+FLT TA F+ +LPA F E+
Sbjct: 389 ALYIMGENPAVSEANVLKVRKALQKLELLVV-QDLFLTRTARFAHYILPAAAFCEK---E 444
Query: 410 DSYYH--RYVLLNEPVAKGPG--KSNSEVTRLIAKALGIKN-PYLYESD--EEVIRKVLE 462
SY + R + + V PG K + E+ L+ K L + PY D EE + E
Sbjct: 445 GSYMNSERRIQWSFKVCDPPGEAKPDWEILSLLGKELDLPGFPYEKVEDITEEYFKMFPE 504
Query: 463 ANRISFEELKKKGFVKIPEGER---KWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYP 519
IS EELK + IP ++ TP GK + + P G+YP
Sbjct: 505 LAGISVEELKNSNGIIIPYKRLHTIRFQTPDGKARLIAVEQIMPWEQP-------NGEYP 557
Query: 520 LRLLSPTYRMTVTSQYHNTHGIIDSN----------LYMNPKDAAERGIKDGDEVIVFNE 569
L L + + V S Y+ + S +Y++ DA + GIKDGD V V
Sbjct: 558 LILTT----VRVMSHYNTGEMTMRSPSLVKLMSEPVVYISESDAKKYGIKDGDLVKVETR 613
Query: 570 NGKIKTKIKLTEDVPPGVVLLYKAFWVKLLGWNVNFLTTD 609
G I K K+++ V GV+++ F + N LT D
Sbjct: 614 RGSIVLKAKISK-VKEGVIVVPFHF-------DANILTND 645
>gi|11498802 molybdopterin oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus] >gi|7483878|pir||B69400
molybdopterin oxidoreductase, molybdopterin binding
subunit homolog - Archaeoglobus fulgidus
>gi|2649381|gb|AAB90041.1| (AE001021) molybdopterin
oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus]
Length = 741
Score = 201 bits (505), Expect = 3e-50
Identities = 193/709 (27%), Positives = 313/709 (43%), Gaps = 101/709 (14%)
Query: 7 RDCYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGD 65
+ C+ C ++ + ++GK++ ++G+P +TRG +CPKG + ++ RLK PL + G+
Sbjct: 46 KSCHGGCRVLVKVKSGKIVHIEGDPSS-LTRGTMCPKGLASIKEVYNPSRLKYPLKRVGE 104
Query: 66 ----EFNETSWDKAISLVAEKLKEMIKEYGSESVLV------------YKYAGDRGVVNY 109
E+ SW +A+ +AEK+KE I+EYG S+L+ +++A G N
Sbjct: 105 RGEGEWKRISWKEALDTIAEKMKEYIEEYGPSSILIGQGTGRGYNRYTFRFARSIGSPNV 164
Query: 110 YFPMRLFHYLNASTIDG-GICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWT 168
P H+ A + GI G D +G G P K IV+WG +T
Sbjct: 165 LLPA---HFCYAPRLAAFGIT--VGGRLYCDYHGWG-GEYP------KTIVHWGKQLEYT 212
Query: 169 NLHG-----FMFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEEN 223
N G F+ A VD T A R+D + VRP TD ALG+ V+I E
Sbjct: 213 NADGEMAVWFLRALEEAEHFILVDPKATPVAHRADLWLPVRPGTDAALALGMLNVIISEE 272
Query: 224 LYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFA-EKKGIIHIGYG 282
LYD+DFV + +GF+ + V + S + VS+ T V ++I+ A FA + G I IG
Sbjct: 273 LYDKDFVEQWTHGFDRLRERVEEYSPDKVSRITWVPEDKIKLAAEWFATSRPGCIQIGQA 332
Query: 283 FQRSLAGGEAVRAIAILPALVGH--RFGFIYDMKTIDKSYAEAKFLRTKPELRIP----- 335
+ + +RAI L A+ G+ R G + + + E L P +P
Sbjct: 333 LEAGNNSIQTLRAIICLMAVTGNIERPGGMVNWVPPETGEMEEFALEVPPPEELPIGADR 392
Query: 336 ----------QMELTEAIED-----GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVV 380
ED R+K +++ +NP+ +Y N + KAL N F+
Sbjct: 393 YKLLALPPFAMCHFESVCEDLLNGERRIKMMHLQGTNPVLAYANSKDVLKAL-LNVEFIS 451
Query: 381 THDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYV--LLNEPVAKGPGKSNSEVTRLI 438
D++++ TA ++D+VLPA + E DI D + +V ++ G ++ + +
Sbjct: 452 VVDLYMSPTAKYADIVLPAAHWLETDDIYDMHPRFFVSAIVRAVEPVGEALPDNVIFNEL 511
Query: 439 AKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGFVKIPEGERKWN----------- 487
K L K Y + E++ L I++EE K+ G + E +
Sbjct: 512 GKRLAPK--YWFSDVYEMLNYQLRKAGITWEEFKEIGVLARTGKEHYYKYKTNYWREGGG 569
Query: 488 --TPSGKIEFYSQRAVKRGLSPFPEYK----------KFKGKYPLRLLSPTYRMT--VTS 533
TP+GKIE YS P P Y+ + KYPL +LS R+ S
Sbjct: 570 FPTPTGKIELYSTILENLNYDPLPHYREPNESPYSTPELSEKYPL-ILSTGGRVPYYFHS 628
Query: 534 QYHNTHGI----IDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVL 589
QY + D ++P+ A + GIKDGD + + G+I+ + +L E + P V
Sbjct: 629 QYRQNPWLRELQPDPVALIHPETAEKYGIKDGDWIWIETPRGRIRQRARLFEAMNPRYVF 688
Query: 590 LYKAFW------VKLLGWNVNFLTTDKKVEKYGKGS-AFHSTWVEVIRC 631
+++ + + N N LT++K GS F + + RC
Sbjct: 689 AQASWYYPEKPDLGIFESNANVLTSNKPPFDPCIGSTTFRAMLCRIYRC 737
>pir||B69074 probable formate dehydrogenase (EC 1.2.1.2) alpha chain -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622673|gb|AAB86026.1| (AE000915) formate
dehydrogenase, alpha subunit homolog [Methanobacterium
thermoautotrophicum]
Length = 865
Score = 199 bits (501), Expect = 8e-50
Identities = 173/637 (27%), Positives = 293/637 (45%), Gaps = 70/637 (10%)
Query: 9 CYDTCSIISEFRNGKLIV-KGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEF 67
C C I R +++ +G+P++P+ RG LC KG ++ +S +RLK PLIK F
Sbjct: 207 CGAGCGIYLGVRGDRVVSSRGDPDNPVNRGKLCVKGRFALKFVNSPERLKKPLIKVDGRF 266
Query: 68 NETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID-- 125
E WD+A+S VAE+L E Y E A NY + + ID
Sbjct: 267 VEVEWDEALSTVAERLSE----YSGEEFAAVASAKCTNEENYILQKFTRAVMLSGNIDHC 322
Query: 126 GGICDRAGQEALKDIYGTAVGVDP-EKLKEHKLIVYWGINAFWTN---LHGFMFAKRNNL 181
+C +L G+ + +L++ I+ G N T+ + + A R+
Sbjct: 323 ARLCHAPSVRSLSMTLGSGAMTNSIAELEDSACILAVGTNPTETHPLTAYSVIRAIRSGA 382
Query: 182 EIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFK 241
++ +D RT ++ +D Q RP +D+ + + + +IEE L+D +F+ F+EF+
Sbjct: 383 KLVVIDPRRTRISELADIHLQNRPGSDIPLIMAMCRFIIEEGLHDTEFIESRTENFDEFR 442
Query: 242 NYVIKLSLNYVSQETGVEVEEIREFAREFAEKK-GIIHIGYGFQRSLAGGEAVRAIAILP 300
+ V+ L L V TGV VE++R A +A KK I G + G + V A++ L
Sbjct: 443 DAVMALDLEEVESLTGVGVEDMRRAAITYASKKPASIIYSMGITQHAHGTDNVIALSNLA 502
Query: 301 ALVGH---------------------RFGFIYDM----KTIDKSYA-EAKFLRTKPELRI 334
L G+ G + D+ +T+D S+ K+ T P +
Sbjct: 503 LLTGNLGKPSAGINPLRGQNNVQGACDMGALPDLLPGYQTLDDSFRFSDKWGSTIPGPGM 562
Query: 335 PQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSD 394
E+ +A +GR++ +YI NPL S P + RKAL D F+V DIF+T+TA +D
Sbjct: 563 TLPEMFDAALEGRLRAMYIMGENPLLSEPETEKTRKALESLD-FLVVQDIFMTETAELAD 621
Query: 395 VVLPANTFFERLDIVDSYYHRYVLLNEPV-AKGPGKSNSEVTRLIAKALGIKNPYLYESD 453
VVLPA + E+ + R L+ + + A G +++ E+ ++A+ +G + + Y S
Sbjct: 622 VVLPACAWAEKDGTFTNTERRVQLIRKALDAPGEARTDWEIICMLAEKMGAEG-FDYASS 680
Query: 454 EEVIRKVL----EANRISFEELKKKGF----VKIPEG------ERKWNTPSGKIEFYSQR 499
E+ +++ IS E L+ G G +++TP+G+ F
Sbjct: 681 SEIFKEIAALVPSYAGISHERLQDGGIQWPCTSYEHGGTQYLHSERFSTPTGRASF---- 736
Query: 500 AVKRGLSPFPEYKKFKGKYPL-----RLLSPTYRMTVTSQYHNTHGIID-SNLYMNPKDA 553
L P + +YP+ R L + ++T + D L +NP DA
Sbjct: 737 -----LLPGYHVGEVSEEYPMVLVTGRNLYQYHTRSMTGRVPELDSFSDREELLINPLDA 791
Query: 554 AERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLL 590
A+ G++DG V+V +E G ++ + +++ DV GVV +
Sbjct: 792 AKLGVEDGGTVLVKSEGGSLEVRARVSGDVMEGVVFM 828
>pir||B75061 alpha chain of formate dehydrogenease PAB1389 - Pyrococcus abyssi
(strain Orsay) >gi|5458896|emb|CAB50383.1| (AJ248287)
ALPHA SUBUNIT OF FORMATE DEHYDROGENEASE [Pyrococcus
abyssi]
Length = 686
Score = 196 bits (492), Expect = 9e-49
Identities = 176/649 (27%), Positives = 300/649 (46%), Gaps = 74/649 (11%)
Query: 29 NPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDE----FNETSWDKAISLVAEKLK 84
NP+ P +G LCPKG + + DRLK PL + G++ F E SW++AI ++A+K K
Sbjct: 36 NPKTP-NKGKLCPKGVSSYQHYVHPDRLKKPLKRVGEKGEGKFEEISWEEAIEIIAKKFK 94
Query: 85 EMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID--GGICDRAGQEALKDIYG 142
E+++ +G E+ L + + + + Y +L L + ++ G +C + A I+G
Sbjct: 95 EILESHGPEA-LAFLGSERCSLEDNYLLQKLARALGTNNVEFAGRLCQSSNFVARSKIFG 153
Query: 143 TAVGVDP-EKLKEHKLIVYWGINAFWTN--LHGFMFAKR---NNLEIWTVDVVRTETAKR 196
+P + + + K+I+ WG N TN L G F K N ++ VD V+TETAK
Sbjct: 154 GPAQTNPFDDIVKSKVILIWGYNPAATNPVLFGQYFEKAILDNGAKLIVVDPVKTETAKY 213
Query: 197 SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQET 256
+ Q P TD+ AL + V+I+E LYD+DFV E V F+ V K + + + +
Sbjct: 214 AHIHLQPYPGTDLAIALAMLHVIIKEELYDKDFVAERVNNFDALARAVEKYTPEWAEKIS 273
Query: 257 GVEVEEIREFAREFAE-KKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH---------- 305
GV I E A FA + + G + G AI+ L A+ G+
Sbjct: 274 GVPASLIHEAAVLFATGGNATVVLNEGINQHANGSITAMAISNLIAITGNIGKEGVFSGV 333
Query: 306 ----RFGFIYDMKTID---------------KSYAEAKFLRTKPELRIPQMELTEAIEDG 346
G + ++ K ++E + + + +A+ +G
Sbjct: 334 IPGAHCGLCAAVPGVNCAQLPGPVPLNEETAKKFSELWGFEVPSKPGLHYQAIFDAMLEG 393
Query: 347 RVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERL 406
++K +YI NP S N +++ +AL++ FVV DIF T+T ++D+VLPA ++E+
Sbjct: 394 KIKGIYIMGQNPARSLANSSKIEEALKR--AFVVVADIFPTETTKYADIVLPAAAWYEKT 451
Query: 407 DIVDSYYHRYVLLNEPVAKGPG--KSNSEVTRLIAKALGIKNPYLYESDEEVIRK---VL 461
V + +R V+ + K PG K + E+ ++AK++G+ + Y S ++V+R+ V+
Sbjct: 452 GTVIT-QNRRVMRSFQAVKPPGEAKPDWEIIVMLAKSIGLGEYFNYSSVDDVLREINNVI 510
Query: 462 EANRISFEELKKKGF--VKIPEGERKWNTP----------SGKIEFYSQRAVKRGLSPFP 509
A + + E K P + TP SGK E G P
Sbjct: 511 PALKGATPERLAKNLEGCMYPCPDENTETPRLFLKGFPTKSGKAELIPVEWKPPGEVPDE 570
Query: 510 EYKKFKGKYPLRLLSPTYRMTVTSQYHNTHGIIDSNLYM-NPKDAAERGIKDGDEVIVFN 568
EY + + RL+ + T++++ + M N +DA GI+ GD V V
Sbjct: 571 EYPFWLTNF--RLVGQFHTGTMSNRTKSLKKRWPGPYVMINERDAKRLGIRSGDLVRVET 628
Query: 569 ENGKIKTKIKLTEDVPPGVVLLYKAFWVKLLGWNVNFLTTDKKVEKYGK 617
G + + ++TE++ GVV + W W N+LT D ++++ K
Sbjct: 629 RRGSLVARAEVTENIREGVVAMP---W----HWGFNYLTKDDAIDEFSK 670
>pir||I40449 hypothetical protein 6 (replication origin region) - Bacillus
subtilis (fragment) >gi|40035|emb|CAA44413.1| (X62539)
unnamed protein product [Bacillus subtilis]
Length = 425
Score = 194 bits (487), Expect = 3e-48
Identities = 135/423 (31%), Positives = 207/423 (48%), Gaps = 21/423 (4%)
Query: 3 SACMRDCYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLI 61
SAC +C+D+C + +GK+ V G+P HPIT G +C +G +L +S DRL+ P+
Sbjct: 7 SACPLNCWDSCGFLVTVDDGKVTKVDGDPNHPITEGKICGRGRMLETKTNSPDRLRYPMK 66
Query: 62 KEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLN 120
K+ EF SW++A+ +A+KL+E IKE + +++ + + R F+ Y
Sbjct: 67 KQNGEFVRISWEQALDEIADKLRE-IKETSETTAVLHSHDYANNGLLKALDQRFFNGYGG 125
Query: 121 ASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFMF---AK 177
+ I G IC +G EA +G + G P + K +V WG N TN+H + K
Sbjct: 126 VTEIVGSICWGSGIEAQSWDFGRSYGHGPLDIYNSKHVVVWGRNVSRTNMHLYHHLQQVK 185
Query: 178 RNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGF 237
+ I +D + TAK +D++ V+P D A V KV+IE DE F+ E+ GF
Sbjct: 186 KKGATITVIDPIFNPTAKLADRYISVKPGMDGWLAAAVLKVLIEMGRTDETFISEHSVGF 245
Query: 238 EEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIA 297
++ K + +SL +T +EE+ A +A+ +G G QR GG +R I
Sbjct: 246 DDVKELLKTVSLEEFIVKTETSMEELEYLAGLYADGPVSTFMGLGMQRYKNGGGTIRWID 305
Query: 298 ILPALVGH----RFGFIYDMKTIDKSYAEAKFLRTKPELR--------IPQMELTEAIED 345
L A G+ G + I +S+A+ K T PEL+ + Q E D
Sbjct: 306 ALVAASGNVGIKGGGANFGNVQIGESFAKTKL--TLPELKTTSRSFSMMTQAEEVLTAAD 363
Query: 346 GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFER 405
++ + + NPL PN N++R+A K + V D +TDTA D VLP T FE
Sbjct: 364 PAIEMIIVTCGNPLTQVPNTNKVRQAFEKVPM-TVAIDSIMTDTAELCDYVLPTATVFEE 422
Query: 406 LDI 408
DI
Sbjct: 423 EDI 425
>gb|AAK41292.1| Formate dehydrogenase Alpha subunit (fdhF-1) [Sulfolobus
solfataricus]
Length = 657
Score = 193 bits (486), Expect = 4e-48
Identities = 189/653 (28%), Positives = 303/653 (45%), Gaps = 70/653 (10%)
Query: 26 VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLVAEKLKE 85
V + EH ++RG +C KGA+ ++ DRL PL + D F T+WD+AIS +A KLKE
Sbjct: 29 VSPSQEHIVSRGHVCGKGAVASEVIYAWDRLTYPLKRVKDTFVRTTWDEAISDIASKLKE 88
Query: 86 MIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTIDG--GICDRAGQEALKDIYGT 143
+ +YGSE++ Y + Y F M+L L + +D +C ALK++ G
Sbjct: 89 IRSKYGSEAIAFYGGCQNTLEEGYSF-MKLARALGTNNVDSCARVCHEPSAMALKELVGI 147
Query: 144 -AVGVDPEKLKEHKLIVYWGINAFWTNLHGFMF-----AKRNNLEIWTVDVVRTETAKRS 197
A V ++ + IV G + T+ H + AKR ++I +D T TA+ +
Sbjct: 148 GASSVTVSEILNARNIVISGESV--TDSHPVLSQYLVEAKRKGVKIVVIDPRMTGTARIA 205
Query: 198 DKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETG 257
D F Q+ TD+ VA +I LYD FV+E V F+EF+ V ++ + T
Sbjct: 206 DLFLQISSGTDIYLYNAVANYLISNGLYDSKFVKERVENFDEFREIVKSYTIEEAERITS 265
Query: 258 VEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRA---IAILPALVGHRFG--FIYD 312
V ++I EFAR A K I+ G G +S +G AV+A +A+L VG G +Y
Sbjct: 266 VSKDKIIEFARIIANKPTILSWGLGLTQS-SGVNAVKAYINLALLTGNVGINGGGLLVYR 324
Query: 313 MKTIDKSYAE--------------------AKFLRTKPELRIPQMELTEA-IEDGRVKFL 351
+T + + +K P ++ + +TEA + D VK L
Sbjct: 325 GQTNVQGSGDLIKPDVFPNGPMNEENAKELSKIWGFVPPIK-KGLSITEAFLRDSNVKAL 383
Query: 352 YIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIVDS 411
++ N NP S PN+ ++ K L+ ++ VV D F+T+TA ++ VLP + E+ V +
Sbjct: 384 FLMNYNPAFSLPNRYKVIKFLKSLELLVVM-DPFMTETAKYAHYVLPTPLWAEKEGSVTN 442
Query: 412 YYHRYVLLNEPVAKGPGKSNSE--VTRLIAKALGIKNPYLYESDEEVIRKVLEA----NR 465
R V V PG+ SE + + IA+ LG+ ++ + V +++ E +
Sbjct: 443 -LDRTVKWRFKVVDPPGEVRSELWIIKRIAEKLGLTG--FHDDPKLVFKEIKEVAKLYSN 499
Query: 466 ISFEELKKKGF-VKIPEGER-----KWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYP 519
++ +EL + P+ E ++ TPSGK +F V+ Y G+
Sbjct: 500 LTLDELMDYSVDSRYPDHESSLYKDRFMTPSGKAKF---GLVRYNEISGDSYILITGRVV 556
Query: 520 LRLLSPTYRMTVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKL 579
R S V Y N S+L +NP+DA + IKDGD V V ++ G K KL
Sbjct: 557 TRYNSDELIKRVPG-YRN----FSSDLLINPEDATKLNIKDGDMVKVVSKCGMAVMKAKL 611
Query: 580 TEDVPPGVVLLYKAFWVKLLGWNVNFLTTDKKVEKYGKGSAFHSTWVEVIRCG 632
T +V G Y + + VN + D ++ K + T+V++ + G
Sbjct: 612 TNEVKVGHTFAY------MHDYYVNNVVCD-DLDDISKTPRYKITFVKIEKLG 657
>gb|AAK43290.1| Formate dehydrogenase (Amino end fragment) [Sulfolobus
solfataricus]
Length = 370
Score = 192 bits (482), Expect = 1e-47
Identities = 121/392 (30%), Positives = 212/392 (53%), Gaps = 39/392 (9%)
Query: 1 MFSACMRDCYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKG-ALLPRWFHSKDRLKLP 59
M AC RDCYDTC F + + P + GF C +G A L R +S +R+
Sbjct: 1 MVHACTRDCYDTCI----FDDNHKPIDTFPFN----GFTCSRGIADLKR--NSLNRVDSV 50
Query: 60 LIKEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYL 119
I E ++ D+A+ L+ +++++ KE +L Y G++G++ +Y+P RL++ +
Sbjct: 51 YI----EGKLSNIDEALDLIVKEIRKRKKE----EILHVDYDGNQGLLTWYYPARLWNVI 102
Query: 120 NASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFAKRN 179
A++ D IC G EA+K YG ++G PE +++ V WG ++ +HG+ +
Sbjct: 103 GAASTDYSICSSEGHEAIKLHYGNSIGALPEDFLKYESFVIWGSELVFSFIHGWNLIRDK 162
Query: 180 NLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEE 239
T+DV +ETAKRS+K++ V+P +DV A+G+ K + E N D + E EE
Sbjct: 163 YKA--TIDVRISETAKRSNKYYIVKPGSDVYLAIGIIKRLFERNWADLSLLDEP----EE 216
Query: 240 FKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAIL 299
+NYV + + + TG++ +I E A + ++ + IG+ RS+ GG+A+ I+++
Sbjct: 217 LRNYVYSFNDEEIEEATGLDSSKIDELAELYYYRRPLTIIGFALGRSINGGDAISLISLI 276
Query: 300 PALVGHRFGFIY--------DMKTIDKSYAEAKFLRTKPELRIPQMELTEAIEDGRVKFL 351
PAL+G + GF Y D K + ++ F + E+ + IE+G++ F+
Sbjct: 277 PALIGMKKGFFYANSQGLGIDFKYLPRTSQILSFKNCR------YAEVGKEIEEGKITFM 330
Query: 352 YIYNSNPLASYPNQNRLRKALRKNDIFVVTHD 383
+++NSNPL S P +R+ A+++ +F+V HD
Sbjct: 331 FVWNSNPLHSLPMSDRIYDAVKEVRLFLVVHD 362
>pir||A59348 formate dehydrogenase (EC 1.2.1.2) alpha chain MJ1351 [similarity]
- Methanococcus jannaschii
Length = 686
Score = 191 bits (480), Expect = 2e-47
Identities = 186/646 (28%), Positives = 295/646 (44%), Gaps = 85/646 (13%)
Query: 9 CYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEF 67
C C + ++G++I + N HPI G LC KG ++ HSKDRL PLIK+ F
Sbjct: 26 CGVGCGLGLVVKDGRVIGIHPNKRHPINEGKLCAKGNYCYQFIHSKDRLTKPLIKKESGF 85
Query: 68 NETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID-- 125
ET+W+KA+ ++AE LK E G + A NY L + ID
Sbjct: 86 VETTWNKALEVIAENLKTYKDEIG-----FFSSARCTNEDNYILQKFARVALKTNNIDHC 140
Query: 126 GGICDRAGQEALKDIYGTAVGVDP-EKLKEHKLIVYWGINAFWTN---LHGFMFAKRNNL 181
+C A + +G+ + E ++ I+ G N F + M AK
Sbjct: 141 ARLCHSATVTGMSACFGSGAMTNSIEDIELADCILIIGSNTFEQHPLIARRIMRAKDKGA 200
Query: 182 EIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFK 241
+I +D RT TAK SD + Q+ P T+V + V+I+ENL D++F++ GFE+ K
Sbjct: 201 KIIVIDPRRTITAKNSDIYLQIIPGTNVALINAMINVIIKENLIDKEFIKNRTEGFEKLK 260
Query: 242 NYVIKLSLNYVSQETGVEVEEIREFAREF--AEKKGIIHIGYGFQRSLAGGEAVRAIAIL 299
+ K + Y S+ GV+ E I E A+ + AE+ II+ G + G +AV+A+ L
Sbjct: 261 EIIKKYTPEYASKICGVDKELIIESAKIYGNAERASIIYC-MGVTQFTHGVDAVKALCNL 319
Query: 300 PALVGH-------------------------------RFGFIYDMKTIDKSYAEAKFLRT 328
+ G+ + + D + + Y + L
Sbjct: 320 AMITGNIGKEGTGVNPLRGQNNVQGACDMGALPNVFPGYQKVEDGYKLFEEYWKTD-LNP 378
Query: 329 KPELRIPQMELTEAIEDGR-VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLT 387
L IP+M E G+ +KFLYI NP+ S P+ + KAL+ D F+V DIFLT
Sbjct: 379 NSGLTIPEM----IDESGKNIKFLYIMGENPIVSDPDVKHVEKALKSLD-FLVVQDIFLT 433
Query: 388 DTALFSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNSE--VTRLIAKALGIK 445
+TA +DVVLPA + E+ D + R V L PG++ + + + +A+ LG
Sbjct: 434 ETAKLADVVLPAACWAEK-DGTFTNTERRVQLIRKAVNPPGEALEDWIIIKKLAEKLGYG 492
Query: 446 NPYLYESDEEV---IRKVLEANR-ISFEELKKKGF-----------VKIPEGERKWNTPS 490
+ + Y E++ IRKV R I+++ LK G KI + K+ T +
Sbjct: 493 DKFNYNKVEDIFNEIRKVTPQYRGITYKRLKIDGIHWPCLDENHSGTKILHKD-KFLTDN 551
Query: 491 GKIEFYSQRAVKRGLSPFPEYKKFKGKYPL-----RLLSPTYRMTVTSQYHN-THGIIDS 544
G+ + + R ++ P+ YP R++ + T+T + N I +
Sbjct: 552 GRGKIFP--VEYREVAELPD-----KDYPFILTTGRIIFHYHTGTMTRRCKNLVEEINEP 604
Query: 545 NLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLL 590
+ +NP DA I++GD V V + G+I K ++TED+ GVV +
Sbjct: 605 FIEINPDDAKSLKIENGDLVKVISRRGEITAKARITEDIKKGVVFM 650
>pir||S57430 probable formate dehydrogenase (EC 1.2.1.2) alpha chain -
Methanobacterium thermoautotrophicum (strain Marburg)
>gi|2127681|pir||S63554 formate dehydrogenease alpha
chain - Methanobacterium thermoautotrophicum
>gi|871456|emb|CAA61208.1| (X87969) putative alpha
subunit of formate dehydrogenease [Methanobacterium
thermoautotrophicum]
Length = 887
Score = 189 bits (476), Expect = 7e-47
Identities = 175/638 (27%), Positives = 286/638 (44%), Gaps = 71/638 (11%)
Query: 9 CYDTCSIISEFRNGKLIV-KGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEF 67
C C I R +++ +G P+ P+ +G LC KG ++ +S +RLK PLIK EF
Sbjct: 226 CGAGCEIYLGVRGNRVVSSRGVPDSPVNQGRLCVKGRFALKFVNSPERLKKPLIKVDGEF 285
Query: 68 NETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID-- 125
E WD+AIS+VAE+L EY E A NY + + ID
Sbjct: 286 VEVEWDEAISVVAERL----SEYTGEEFAAVASAKCTNEENYLLQKFTRAVMGSGNIDHC 341
Query: 126 GGICDRAGQEALKDIYGT-AVGVDPEKLKEHKLIVYWGINAFWTN---LHGFMFAKRNNL 181
+C L+ G+ A+ +L I+ G N T+ + + A R+
Sbjct: 342 ARLCHAPSLTGLRMSLGSGAMTNSISELGAAGCILAVGTNPTETHPVTSYRVIRALRSRA 401
Query: 182 EIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFK 241
+ VD +T ++ +D Q RP +D+ + + + ++EE L+D +F+ FE+F+
Sbjct: 402 RLVVVDPRKTRLSELADIHLQNRPGSDIPLLMAMCRFILEEGLHDSEFIDSRTEKFEDFR 461
Query: 242 NYVIKLSLNYVSQETGVEVEEIREFAREFAEKK-GIIHIGYGFQRSLAGGEAVRAIAILP 300
+ V+ L L+ V + TGV V++IR A +A I G + + G V A++ L
Sbjct: 462 DAVMALDLDEVERITGVNVKDIRRAAIMYASNSPASIIYSMGITQHVNGTGNVLALSNLA 521
Query: 301 ALVGH---------------------RFGFIYDMKTIDKSYAEA------KFLRTKPELR 333
L G+ G + D+ + EA K+ P
Sbjct: 522 LLTGNIGIKSAGINPLRGQNNVQGACDMGALPDLLPGYQGIGEAAGKFSEKWGSPIPPAG 581
Query: 334 IPQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFS 393
+ E+ +A DG+++ +YI NPL S P+ R R+AL + F+V DI LT+TA +
Sbjct: 582 LTLPEMFDAARDGKIRCMYIMGENPLLSEPDIERTREALEGLE-FLVVQDICLTETAELA 640
Query: 394 DVVLPANTFFERLDIVDSYYHRYVLLNEPV-AKGPGKSNSEVTRLIAKALGIKNPYLYES 452
DVVLPA +F E+ + R LL + + A G + ++ +IA +G + + YES
Sbjct: 641 DVVLPAASFAEKDGTFTNTERRVQLLRKALDAPGDALPDWQIISMIAGRMG-REDFDYES 699
Query: 453 DEEVIRKVLEA----NRISFEELKKKGFVKIPEGE----------RKWNTPSGKIEFYSQ 498
+ ++ E IS E LK G E ++ TP+G+ F
Sbjct: 700 ASRIFDEIRELVPSYAGISHERLKSGGIQWPCTSEEDAGTGYLHSEEFPTPTGRASF--- 756
Query: 499 RAVKRGLSPFPEYKKFKGKYPL-----RLLSPTYRMTVTSQYHNTHGIID-SNLYMNPKD 552
L P +++ +YPL R L + ++T++ D L MNP D
Sbjct: 757 ------LLPDYQFRGVPEEYPLVLVTGRNLYQYHTRSMTARVEELESFSDHEELLMNPAD 810
Query: 553 AAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLL 590
A+ GI++GD V V +E G ++ + +T++V GVV +
Sbjct: 811 ASSMGIREGDTVEVTSERGSLRVRAGVTDEVMEGVVFM 848
>pir||S03785 dimethylsulfoxide reductase (EC 1.8.-.-) chain A precursor,
anaerobic - Escherichia coli >gi|145755|gb|AAA83843.1|
(J03412) anaerobic dimethyl sulfoxide reductase
[Escherichia coli] >gi|1651421|dbj|BAA35626.1| (D90727)
Dimethylsulfoxide reductase chain a [Escherichia coli]
>gi|1787121|gb|AAC73980.1| (AE000191) anaerobic dimethyl
sulfoxide reductase subunit A [Escherichia coli K12]
Length = 785
Score = 189 bits (475), Expect = 9e-47
Identities = 204/765 (26%), Positives = 331/765 (42%), Gaps = 149/765 (19%)
Query: 1 MFSACMRDCYDTCSIISEFRNG--KLIVKGNPEHPITRGF----LCPKGALLPRWFHSKD 54
++SAC +C C + +G K + N G C +G + R ++ D
Sbjct: 30 IWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPD 89
Query: 55 RLKLPLIKEG----DEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRG-VVNY 109
RLK P+ + G +F SW++A ++A ++ +IKEYG+ES+ + G G +
Sbjct: 90 RLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTR 149
Query: 110 YFPMRLFHYLNASTIDGGICDRAGQ-------EALKDIYGT-AVGVDPEKLKEHKLIVYW 161
+P GG + G E L YG A G P ++ KL+V +
Sbjct: 150 SWPPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLF 209
Query: 162 GINAFWTNLHGF-------MFAKRNNLEIWTVDVVRTET-AKRSDKFFQVRPDTDVLFAL 213
G N T + G +++N + +D T+T A R D++ +RP TD
Sbjct: 210 GNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVN 269
Query: 214 GVAKVMIEENLYDEDFVRENVYGFEE------------FKNYV-------IKLSLNYVSQ 254
G+A VMI ENL D+ F+ + G++E +K Y+ + + + SQ
Sbjct: 270 GLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQ 329
Query: 255 ETGVEVEEIREFAREFAEKK-GIIHIGYGFQRSLAGGEAVRAIAILPALVGHRFGFIYDM 313
TGV ++I + ARE K I G+G QR G A RAI++L L G+ +
Sbjct: 330 ITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGN-----VGI 384
Query: 314 KTIDKSYAEAKFLRTKPELRIPQME-----------LTEAIEDGR--------------- 347
+ E + + P +R+P +E T+AIE G
Sbjct: 385 NGGNSGAREGSY--SLPFVRMPTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKL 442
Query: 348 ---VKFLYIYNSNPLASYPNQ-NRLRKALR--KNDIFVVTHDIFLTDTALFSDVVLPANT 401
+K ++ Y N L + ++ NR + L+ K +V D +T +A ++D++LP T
Sbjct: 443 DVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCT 502
Query: 402 FFERLDIV---DSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKALGIKNPYLY-ESDEE 455
E++D YV+ N+ V K K+ E+T +AK LG++ + + EE
Sbjct: 503 ASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQFTEGRTQEE 562
Query: 456 VIRKVLEANRIS------FEELKKKGFVKI--PEGER-------------KWNTPSGKIE 494
+R + +R + FEE +K+G K P+G TPSGKIE
Sbjct: 563 WMRHLYAQSREAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQANPLTTPSGKIE 622
Query: 495 FYSQRAVKRG----------LSPFPEYKK--------FKGKYPLRLLSPTYRMTVTSQYH 536
YSQ + P P Y +YPL+L Y+ S+ H
Sbjct: 623 IYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQLTGFHYK----SRVH 678
Query: 537 NTHGIID-------SNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVL 589
+T+G +D +++NP DA +RGI +GD+V +FN+ G++ + K+T + PGVV
Sbjct: 679 STYGNVDVLKAACRQEMWINPLDAQKRGIHNGDKVRIFNDRGEVHIEAKVTPRMMPGVVA 738
Query: 590 LYKAFWVKL------LGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
L + W G +N LTT ++ KG+ H+ V+V
Sbjct: 739 LGEGAWYDPDAKRVDKGGCINVLTT-QRPSPLAKGNPSHTNLVQV 782
>sp|P18775|DMSA_ECOLI ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAIN A PRECURSOR (DMSO
REDUCTASE)
Length = 814
Score = 189 bits (475), Expect = 9e-47
Identities = 204/765 (26%), Positives = 331/765 (42%), Gaps = 149/765 (19%)
Query: 1 MFSACMRDCYDTCSIISEFRNG--KLIVKGNPEHPITRGF----LCPKGALLPRWFHSKD 54
++SAC +C C + +G K + N G C +G + R ++ D
Sbjct: 59 IWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVRACLRGRSMRRRVYNPD 118
Query: 55 RLKLPLIKEG----DEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRG-VVNY 109
RLK P+ + G +F SW++A ++A ++ +IKEYG+ES+ + G G +
Sbjct: 119 RLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGNESIYLNYGTGTLGGTMTR 178
Query: 110 YFPMRLFHYLNASTIDGGICDRAGQ-------EALKDIYGT-AVGVDPEKLKEHKLIVYW 161
+P GG + G E L YG A G P ++ KL+V +
Sbjct: 179 SWPPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNYTYGGWADGNSPSDIENSKLVVLF 238
Query: 162 GINAFWTNLHGF-------MFAKRNNLEIWTVDVVRTET-AKRSDKFFQVRPDTDVLFAL 213
G N T + G +++N + +D T+T A R D++ +RP TD
Sbjct: 239 GNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVN 298
Query: 214 GVAKVMIEENLYDEDFVRENVYGFEE------------FKNYV-------IKLSLNYVSQ 254
G+A VMI ENL D+ F+ + G++E +K Y+ + + + SQ
Sbjct: 299 GLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKNGHYKAYILGEGPDGVAKTPEWASQ 358
Query: 255 ETGVEVEEIREFAREFAEKK-GIIHIGYGFQRSLAGGEAVRAIAILPALVGHRFGFIYDM 313
TGV ++I + ARE K I G+G QR G A RAI++L L G+ +
Sbjct: 359 ITGVPADKIIKLAREIGSTKPAFISQGWGPQRHANGEIATRAISMLAILTGN-----VGI 413
Query: 314 KTIDKSYAEAKFLRTKPELRIPQME-----------LTEAIEDGR--------------- 347
+ E + + P +R+P +E T+AIE G
Sbjct: 414 NGGNSGAREGSY--SLPFVRMPTLENPIQTSISMFMWTDAIERGPEMTALRDGVRGKDKL 471
Query: 348 ---VKFLYIYNSNPLASYPNQ-NRLRKALR--KNDIFVVTHDIFLTDTALFSDVVLPANT 401
+K ++ Y N L + ++ NR + L+ K +V D +T +A ++D++LP T
Sbjct: 472 DVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCELIVVIDCHMTSSAKYADILLPDCT 531
Query: 402 FFERLDIV---DSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKALGIKNPYLY-ESDEE 455
E++D YV+ N+ V K K+ E+T +AK LG++ + + EE
Sbjct: 532 ASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTIYEMTSELAKRLGVEQQFTEGRTQEE 591
Query: 456 VIRKVLEANRIS------FEELKKKGFVKI--PEGER-------------KWNTPSGKIE 494
+R + +R + FEE +K+G K P+G TPSGKIE
Sbjct: 592 WMRHLYAQSREAIPELPTFEEFRKQGIFKKRDPQGHHVAYKAFREDPQANPLTTPSGKIE 651
Query: 495 FYSQRAVKRG----------LSPFPEYKK--------FKGKYPLRLLSPTYRMTVTSQYH 536
YSQ + P P Y +YPL+L Y+ S+ H
Sbjct: 652 IYSQALADIAATWELPEGDVIDPLPIYTPGFESYQDPLNKQYPLQLTGFHYK----SRVH 707
Query: 537 NTHGIID-------SNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVL 589
+T+G +D +++NP DA +RGI +GD+V +FN+ G++ + K+T + PGVV
Sbjct: 708 STYGNVDVLKAACRQEMWINPLDAQKRGIHNGDKVRIFNDRGEVHIEAKVTPRMMPGVVA 767
Query: 590 LYKAFWVKL------LGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
L + W G +N LTT ++ KG+ H+ V+V
Sbjct: 768 LGEGAWYDPDAKRVDKGGCINVLTT-QRPSPLAKGNPSHTNLVQV 811
>sp|P45004|DMSA_HAEIN ANAEROBIC DIMETHYL SULFOXIDE REDUCTASE CHAIN A PRECURSOR (DMSO
REDUCTASE) >gi|1073844|pir||G64109 dimethylsulfoxide
reductase (EC 1.8.-.-) chain A precursor, anaerobic -
Haemophilus influenzae (strain Rd KW20)
>gi|1574081|gb|AAC22706.1| (U32785) anaerobic dimethyl
sulfoxide reductase, chain A (dmsA) [Haemophilus
influenzae Rd]
Length = 806
Score = 183 bits (459), Expect = 6e-45
Identities = 198/761 (26%), Positives = 327/761 (42%), Gaps = 136/761 (17%)
Query: 1 MFSACMRDCYDTCSIISEFRNGKLIVKG---------NPEHPITRGFLCPKGALLPRWFH 51
++SAC +C C + ++ ++ N +H + C +G + R +
Sbjct: 50 VWSACTVNCGSRCPLRMHVKDNRITYVETDNTGTETYNLDHQVRA---CLRGRSMRRRVY 106
Query: 52 SKDRLKLPLIKEGD----EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRG-V 106
+ DRLK P+ + G +F SWD+A++ +A+ LK IK+YG+ES+ + G G
Sbjct: 107 NPDRLKYPMKRIGKRGEGKFKRISWDEALTEIADALKRNIKKYGNESIYLNYGTGTLGGT 166
Query: 107 VNYYFPMRLFHYLNASTIDGGICDRAGQEALKDIY---------GTAVGVDPEKLKEHKL 157
+ +P GG + G + I G A+G ++ KL
Sbjct: 167 MAKSWPPASTMIARFMNCIGGYLNHYGDYSTAQIAVGLDYTYGGGWALGNGMADIENTKL 226
Query: 158 IVYWGINAFWTNLHGFMFA-------KRNNLEIWTVDVVRTET-AKRSDKFFQVRPDTDV 209
IV +G N T + G R+N ++ +D +T A R D++ +RP TD
Sbjct: 227 IVLFGNNPAETRMSGGGLTYCIEQAKARSNAKMIIIDPRYNDTGAGREDEWIPIRPGTDA 286
Query: 210 LFALGVAKVMIEENLYDEDFVRENVYGFEE------------FKNYV-------IKLSLN 250
+A VMI+ENL D+ F+ + G++E +K Y+ I +
Sbjct: 287 ALVAALAYVMIQENLVDQPFLDKYCVGYDEKTLPTDAPKNGHYKAYILGYGNDGIAKTPE 346
Query: 251 YVSQETGVEVEEIREFAREFAEKK-GIIHIGYGFQRSLAGGEAVRAIAILPALVGHRFGF 309
+ ++ TG+ E I + ARE K I G+G QR G RAIA+LP L G+
Sbjct: 347 WAAKITGIPAERIIKLAREIGSTKPAFISQGWGPQRRSNGELISRAIAMLPILTGNVGIH 406
Query: 310 IYDMKTIDKSYA----EAKFLRTKPELRIPQMELTEAIEDGR------------------ 347
+ + +Y+ L+ + IP T+AI G
Sbjct: 407 GGNTGARESAYSIPFVRMPTLKNPVKASIPMFLWTDAIIRGTEMTALTDGIRGVDKLSSP 466
Query: 348 VKFLYIYNSNPLASYPNQNRLRKALRKNDI---FVVTHDIFLTDTALFSDVVLPANTFFE 404
+K ++ Y SN L + Q + ++D ++T D +T TA +SD++LP T E
Sbjct: 467 IKVIWNYASNCLINQHAQINRTHDILQDDTQCEMIITIDNHMTSTAKYSDILLPDCTTSE 526
Query: 405 RLDI-VDSYYHR--YVLLNEPVAKGPGKSNSEVTRL--IAKALGIKNPYLY-ESDEEVIR 458
++D +D++ YV+ + V K + L +A+ +G+K + + EE +R
Sbjct: 527 QMDFALDAFVSNMAYVIFADQVIKPSFECRPIYDMLSDLAEKMGVKEKFTEGRTQEEWLR 586
Query: 459 KVLEANRI------SFEELKKKGFVKI--PEGER-------------KWNTPSGKIEFYS 497
+ E +R +FEE +++G K P G + TPSGKIE YS
Sbjct: 587 HIYEQSREKLPELPTFEEFRQQGIFKKVDPNGFKVAYKDFRDNPEAHPLKTPSGKIEIYS 646
Query: 498 QRAVKRG----------LSPFPEYKK--------FKGKYPLRLLSPTYRMTVTSQYHNTH 539
R + + P P + + KYPL+L Y+ S Y N
Sbjct: 647 SRLAEIAKTWKLAEDDVIHPLPIHAQSFEHYGDPLMEKYPLQLSGFHYKARTHSTYGNVD 706
Query: 540 GIIDSN---LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFW- 595
+ +N ++MNP DA R IK+GD + +FN+ G++ +K+T + PGVV L + W
Sbjct: 707 VLKAANPQEVWMNPIDAEPRNIKNGDMIRIFNDRGEVHINVKITPRIIPGVVALSEGAWY 766
Query: 596 ------VKLLGWNVNFLTTDKKVEKYGKGSAFHSTWVEVIR 630
+ G +N LTT ++ KG+ HS V+V R
Sbjct: 767 APDKDRIDHSGC-INVLTT-QRPSPLAKGNPQHSNLVQVER 805
>pir||I40028 nitrate reductase (narB) - Bacillus subtilis (fragment)
>gi|710019|dbj|BAA06353.1| (D30689) catalytic subunit of
nitrate reductase [Bacillus subtilis]
Length = 676
Score = 178 bits (448), Expect = 1e-43
Identities = 161/625 (25%), Positives = 278/625 (43%), Gaps = 70/625 (11%)
Query: 31 EHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLVAEKLKEMIKEY 90
++P T+G LC KG + + R+ PL+K+ EF SW++A++ + +++ + E+
Sbjct: 20 DNPTTQGRLCIKGMNAHQHALNSSRITRPLLKKNGEFMPVSWEEALNHIKDQVTMIQTEH 79
Query: 91 GSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID--GGICDRAGQEALKDIYGTAVGVD 148
G +++ VY A Y L ID G +C A A +G G+
Sbjct: 80 GHDAMAVYGSASITNEEAYLLGKFARVGLQTKYIDYNGRLCMSAAATAANQTFGADRGLT 139
Query: 149 P--EKLKEHKLIVYWGINAFW---TNLHGFMFAKRNNLEIWTVDVVRTETAKRSDKFFQV 203
+ ++I+ G N T + F AK N +D T T K +D ++
Sbjct: 140 NPLSDIPHTRVIILAGTNIAECQPTIMPYFEKAKENGAYFIAIDPRETATTKIADLHLKI 199
Query: 204 RPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEVEEI 263
+P TD A G+ K++I+E L +EDF++ GFEE K + L LN ++++T V + +I
Sbjct: 200 KPGTDAALANGLVKIIIDEQLINEDFIQSRTNGFEELKQHTDSLDLNDIAEQTSVSLVDI 259
Query: 264 REFAREFA-EKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGHRFGFIYD---------- 312
R+ A +FA E G++ G ++ G AV+ + + G + G Y
Sbjct: 260 RKAAVKFAKETSGMLFTARGIEQQTDGTAAVKGFLNMVLITG-KIGKPYSGYGAITGQGN 318
Query: 313 ----------------MKTIDKSYAEAKFLRT-------KPELRIPQMELTEAIEDGRVK 349
++I+ A + P + E+ E I DG +K
Sbjct: 319 GQGAREHGQKADQLPGYRSIENEEHRAHIAKVWGIHQDDLPRKGVSAYEVMEKINDGDIK 378
Query: 350 FLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIV 409
L++ SNP S PN N ++KALR+ FV D+F+++TA ++DV+LPA+++ E +
Sbjct: 379 GLFLMCSNPAVSSPNANLVKKALRRLTFFVAI-DLFISETAKYADVILPASSYLEDEGTM 437
Query: 410 DSYYHRYVLLNEPVAKGPG--KSNSEVTRLIAKALGIKNPYLYESDEEVIRKVLEANR-- 465
+ R V L E PG K + ++ +A ALG + Y S E++ ++ EA+R
Sbjct: 438 TNVEGR-VTLREASRPCPGEAKHDWQIICDLASALGKGRYFSYTSAEDIFNELREASRGG 496
Query: 466 ------ISFEELKKKGFVKIPEGERKWNTPSGKI--EFYSQRAVKRGLSPFPEYKKFKGK 517
IS+ L+++G + P E + +G++ E ++ K LS P +
Sbjct: 497 IADYSGISYGRLRREGGIHWPCPESD-HPGTGRLFTESFAHPDQKAALSVIPNEPPVPKE 555
Query: 518 YPLRLLSPTYRMTVTSQYHNTHGI------------IDSNLYMNPKDAAERGIKDGDEVI 565
P P Y T H G+ +S + ++P+ AA I+D V
Sbjct: 556 KPTADY-PLYLTTGRVMSHYLTGVQTRKSAALAARHFESFMEIHPQTAATYNIEDRVLVK 614
Query: 566 VFNENGKIKTKIKLTEDVPPGVVLL 590
+ + G I + KL+E + V +
Sbjct: 615 IESPRGSITVRSKLSEQIRKDTVFV 639
>sp|P42434|NASC_BACSU ASSIMILATORY NITRATE REDUCTASE CATALYTIC SUBUNIT
>gi|7431437|pir||E69665 nitrate reductase (EC 1.7.99.4)
nasC - Bacillus subtilis >gi|1805403|dbj|BAA08965.1|
(D50453) catalytic subunit of nitrate reductase
[Bacillus subtilis] >gi|2632617|emb|CAB12125.1| (Z99105)
assimilatory nitrate reductase (catalytic subunit)
[Bacillus subtilis]
Length = 710
Score = 178 bits (448), Expect = 1e-43
Identities = 161/625 (25%), Positives = 278/625 (43%), Gaps = 70/625 (11%)
Query: 31 EHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLVAEKLKEMIKEY 90
++P T+G LC KG + + R+ PL+K+ EF SW++A++ + +++ + E+
Sbjct: 54 DNPTTQGRLCIKGMNAHQHALNSSRITRPLLKKNGEFMPVSWEEALNHIKDQVTMIQTEH 113
Query: 91 GSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID--GGICDRAGQEALKDIYGTAVGVD 148
G +++ VY A Y L ID G +C A A +G G+
Sbjct: 114 GHDAMAVYGSASITNEEAYLLGKFARVGLQTKYIDYNGRLCMSAAATAANQTFGADRGLT 173
Query: 149 P--EKLKEHKLIVYWGINAFW---TNLHGFMFAKRNNLEIWTVDVVRTETAKRSDKFFQV 203
+ ++I+ G N T + F AK N +D T T K +D ++
Sbjct: 174 NPLSDIPHTRVIILAGTNIAECQPTIMPYFEKAKENGAYFIAIDPRETATTKIADLHLKI 233
Query: 204 RPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEVEEI 263
+P TD A G+ K++I+E L +EDF++ GFEE K + L LN ++++T V + +I
Sbjct: 234 KPGTDAALANGLVKIIIDEQLINEDFIQSRTNGFEELKQHTDSLDLNDIAEQTSVSLVDI 293
Query: 264 REFAREFA-EKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGHRFGFIYD---------- 312
R+ A +FA E G++ G ++ G AV+ + + G + G Y
Sbjct: 294 RKAAVKFAKETSGMLFTARGIEQQTDGTAAVKGFLNMVLITG-KIGKPYSGYGAITGQGN 352
Query: 313 ----------------MKTIDKSYAEAKFLRT-------KPELRIPQMELTEAIEDGRVK 349
++I+ A + P + E+ E I DG +K
Sbjct: 353 GQGAREHGQKADQLPGYRSIENEEHRAHIAKVWGIHQDDLPRKGVSAYEVMEKINDGDIK 412
Query: 350 FLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIV 409
L++ SNP S PN N ++KALR+ FV D+F+++TA ++DV+LPA+++ E +
Sbjct: 413 GLFLMCSNPAVSSPNANLVKKALRRLTFFVAI-DLFISETAKYADVILPASSYLEDEGTM 471
Query: 410 DSYYHRYVLLNEPVAKGPG--KSNSEVTRLIAKALGIKNPYLYESDEEVIRKVLEANR-- 465
+ R V L E PG K + ++ +A ALG + Y S E++ ++ EA+R
Sbjct: 472 TNVEGR-VTLREASRPCPGEAKHDWQIICDLASALGKGRYFSYTSAEDIFNELREASRGG 530
Query: 466 ------ISFEELKKKGFVKIPEGERKWNTPSGKI--EFYSQRAVKRGLSPFPEYKKFKGK 517
IS+ L+++G + P E + +G++ E ++ K LS P +
Sbjct: 531 IADYSGISYGRLRREGGIHWPCPESD-HPGTGRLFTESFAHPDQKAALSVIPNEPPVPKE 589
Query: 518 YPLRLLSPTYRMTVTSQYHNTHGI------------IDSNLYMNPKDAAERGIKDGDEVI 565
P P Y T H G+ +S + ++P+ AA I+D V
Sbjct: 590 KPTADY-PLYLTTGRVMSHYLTGVQTRKSAALAARHFESFMEIHPQTAATYNIEDRVLVK 648
Query: 566 VFNENGKIKTKIKLTEDVPPGVVLL 590
+ + G I + KL+E + V +
Sbjct: 649 IESPRGSITVRSKLSEQIRKDTVFV 673
>gb|AAB06233.1| (U26665) dimethyl sulphoxide reductase subunit A [Haemophilus
influenzae]
Length = 806
Score = 178 bits (447), Expect = 2e-43
Identities = 197/761 (25%), Positives = 325/761 (41%), Gaps = 136/761 (17%)
Query: 1 MFSACMRDCYDTCSIISEFRNGKLIVKG---------NPEHPITRGFLCPKGALLPRWFH 51
++SAC +C C + ++ ++ N +H + C +G + R +
Sbjct: 50 VWSACTVNCGSRCPLRMHVKDNRITYVETDNTGTETYNLDHQVRA---CLRGRSMRRRVY 106
Query: 52 SKDRLKLPLIKEGD----EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRG-V 106
+ DRLK P+ + G +F SWD+A++ +A LK IK+YG+ES+ + G G
Sbjct: 107 NPDRLKYPMKRIGKRGEGKFKRISWDEALTEIAYALKRNIKKYGNESIYLNYGTGTLGGT 166
Query: 107 VNYYFPMRLFHYLNASTIDGGICDRAGQEALKDIY---------GTAVGVDPEKLKEHKL 157
+ +P GG + G + I G A+G ++ KL
Sbjct: 167 MAKSWPPASTMIARFMNCIGGYLNHYGDYSTAQIAVGLDYTYGGGWALGNGMADIENTKL 226
Query: 158 IVYWGINAFWTNLHGFMFA-------KRNNLEIWTVDVVRTET-AKRSDKFFQVRPDTDV 209
IV +G N T + G R+N ++ +D +T A R D++ +RP TD
Sbjct: 227 IVLFGNNPAETRMSGGGLTYCIEQAKARSNAKMIIIDPRYNDTGAGREDEWIPIRPGTDA 286
Query: 210 LFALGVAKVMIEENLYDEDFVRENVYGFEE------------FKNYV-------IKLSLN 250
+A VMI+ENL D+ F+ + G++E +K Y+ I +
Sbjct: 287 ALVAALAYVMIQENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGYGNDGIAKTPE 346
Query: 251 YVSQETGVEVEEIREFAREFAEKK-GIIHIGYGFQRSLAGGEAVRAIAILPALVGHRFGF 309
+ ++ TG+ E I + ARE K I G+G QR G RAIA+LP L G+
Sbjct: 347 WAAKITGIPAERIIKLAREIGSTKPAFISQGWGPQRRSNGELISRAIAMLPILTGNVGIH 406
Query: 310 IYDMKTIDKSYA----EAKFLRTKPELRIPQMELTEAIEDGR------------------ 347
+ + +Y+ L+ + IP T+AI G
Sbjct: 407 GGNTGARESAYSIPFVRMPTLKNPMKASIPMFLGTDAIIRGTEMTALTDGIRGVDKLSPP 466
Query: 348 VKFLYIYNSNPLASYPNQNRLRKALRKNDI---FVVTHDIFLTDTALFSDVVLPANTFFE 404
+K ++ Y SN L + Q + ++D ++T D +T TA +SD++LP E
Sbjct: 467 IKVIWNYASNCLINQHAQINRTHDILQDDTQCEMIITIDNHMTSTAKYSDILLPDCPTSE 526
Query: 405 RLDI-VDSYYHR--YVLLNEPVAKGPGKSNSEVTRL--IAKALGIKNPYLY-ESDEEVIR 458
++D +D++ YV+ + V K + L +A+ +G+K + + EE +R
Sbjct: 527 QMDFALDAFVSNMAYVIFADQVIKPSFECRPIYDMLSDLAEKMGVKEKFTEGRTQEEWLR 586
Query: 459 KVLEANRI------SFEELKKKGFVKI--PEGER-------------KWNTPSGKIEFYS 497
+ E +R +FEE +++G K P G + TPSGKIE YS
Sbjct: 587 HIYEQSREKLPELPTFEEFRQQGIFKKVDPNGFKVAYKDFRDNPEAHPLKTPSGKIEIYS 646
Query: 498 QRAVKRG----------LSPFPEYKK--------FKGKYPLRLLSPTYRMTVTSQYHNTH 539
R + + P P + + KYPL+L Y+ S Y N
Sbjct: 647 SRLAEIAKTWKLAEDDVIHPLPIHAQSFEHYGDPLMEKYPLQLSGFHYKARTHSTYGNVD 706
Query: 540 GIIDSN---LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFW- 595
+ +N ++MNP DA R IK+GD + +FN+ G++ +K+T + PGVV L + W
Sbjct: 707 VLKAANPQEVWMNPIDAKPRNIKNGDMIRIFNDRGEVHINVKITPRIIPGVVALSEGAWY 766
Query: 596 ------VKLLGWNVNFLTTDKKVEKYGKGSAFHSTWVEVIR 630
+ G +N LTT ++ KG+ HS V+V R
Sbjct: 767 APDKDRIDHSGC-INVLTT-QRPSPLAKGNPQHSNLVQVER 805
>pir||F64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A2 precursor,
anaerobic - Escherichia coli >gi|1742611|dbj|BAA15312.1|
(D90801) Anaerobic dimethyl sulfoxide reductase chain A
precursor (EC 1.-.-.-) (DMSO reductase). [Escherichia
coli] >gi|1742622|dbj|BAA15322.1| (D90802) Anaerobic
dimethyl sulfoxide reductase chain A precursor (EC
1.-.-.-) (DMSO reductase). [Escherichia coli]
>gi|1787871|gb|AAC74660.1| (AE000254) putative
oxidoreductase, major subunit [Escherichia coli K12]
Length = 808
Score = 175 bits (439), Expect = 1e-42
Identities = 191/717 (26%), Positives = 305/717 (41%), Gaps = 139/717 (19%)
Query: 40 CPKGALLPRWFHSKDRLKLPLIKEGD----EFNETSWDKAISLVAEKLKEMIKEYGSESV 95
C +G + R + DRLK P+ + G +F SWD+A+ +++ L+ ++K+YG+E+V
Sbjct: 100 CLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTISDNLRRILKDYGNEAV 159
Query: 96 LVYKYAGDRG--VVNYYFPMRLFHYLNASTIDGGICDRAGQ-------EALKDIYGTAVG 146
V G G + N P RL + GG R G A+ ++G G
Sbjct: 160 HVLYGTGVDGGNITNSNVPYRLMNSC------GGFLSRYGSYSTAQISAAMSYMFGANDG 213
Query: 147 VDPEKLKEHKLIVYWGINAFWTNLHGF-------MFAKRNNLEIWTVDVVRTETAK-RSD 198
P+ + KL+V +G N T + G +R+N + +D +TA R D
Sbjct: 214 NSPDDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGRED 273
Query: 199 KFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEE------------FKNYV-- 244
++ +RP TD A +A V+I EN+ D+ F+ + G++E +K Y+
Sbjct: 274 EWLPIRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILG 333
Query: 245 -----IKLSLNYVSQETGVEVEEIREFAREFAEKK-GIIHIGYGFQRSLAGGEAVRAIAI 298
I + + ++ T + E+I + ARE K I G+G QR G + RAIA+
Sbjct: 334 EGPDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAM 393
Query: 299 LPALVGHRFGFIYDMKTI-----DKSYAEAKFLRTKPELRIPQMELTEAIEDGR------ 347
L L G+ G + D L + +I T+AI+ G
Sbjct: 394 LSVLTGN-VGINGGNSGVREGSWDLGVEWFPMLENPVKTQISVFTWTDAIDHGTEMTATR 452
Query: 348 ------------VKFLYIYNSNPLAS-YPNQNRLRKALRKNDI--FVVTHDIFLTDTALF 392
+KFL+ Y SN L + + + N + L+ + +V D F+T +A +
Sbjct: 453 DGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTASAKY 512
Query: 393 SDVVLPANTFFERLDIVD---SYYHRYVLLNEPV--AKGPGKSNSEVTRLIAKALGIKNP 447
D++LP E+ D++ + YV+L +P AK K + +AK LG P
Sbjct: 513 CDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRLG---P 569
Query: 448 YLYE------SDEEVIR----KVLEAN--RISFEELKKKGFVKIPEGERKW--------- 486
+Y+ S E I+ K E N +EE+K G K E +
Sbjct: 570 DVYQTFTEGRSQHEWIKYLHAKTKERNPEMPDYEEMKTTGIFKKKCPEEHYVAFRAFRED 629
Query: 487 ------NTPSGKIEFYSQRAVKRG----------LSPFPEYKK--------FKGKYPLRL 522
TPSGKIE YS+R K + P P Y + YPL+L
Sbjct: 630 PQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDPLRKTYPLQL 689
Query: 523 LSPTYRMTVTSQYHNTHGIIDS---NLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKL 579
Y+ S Y N + + +++NP DA RGI+ GD V VFN NG++ K+
Sbjct: 690 TGFHYKARTHSSYGNIDVLQQACPQEVWINPIDAQARGIRHGDTVRVFNNNGEMLIAAKV 749
Query: 580 TEDVPPGVVLLYKAFWVKL--------LGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
T + PGV + + W+K G ++N LT+ + KG+ HS V++
Sbjct: 750 TPRILPGVTAIGQGAWLKADMFGDRVDHGGSINILTSHRP-SPLAKGNPSHSNLVQI 805
>sp|P77783|YNFF_ECOLI PUTATIVE DIMETHYL SULFOXIDE REDUCTASE CHAIN YNFF PRECURSOR (DMSO
REDUCTASE)
Length = 807
Score = 175 bits (439), Expect = 1e-42
Identities = 191/717 (26%), Positives = 305/717 (41%), Gaps = 139/717 (19%)
Query: 40 CPKGALLPRWFHSKDRLKLPLIKEGD----EFNETSWDKAISLVAEKLKEMIKEYGSESV 95
C +G + R + DRLK P+ + G +F SWD+A+ +++ L+ ++K+YG+E+V
Sbjct: 99 CLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTISDNLRRILKDYGNEAV 158
Query: 96 LVYKYAGDRG--VVNYYFPMRLFHYLNASTIDGGICDRAGQ-------EALKDIYGTAVG 146
V G G + N P RL + GG R G A+ ++G G
Sbjct: 159 HVLYGTGVDGGNITNSNVPYRLMNSC------GGFLSRYGSYSTAQISAAMSYMFGANDG 212
Query: 147 VDPEKLKEHKLIVYWGINAFWTNLHGF-------MFAKRNNLEIWTVDVVRTETAK-RSD 198
P+ + KL+V +G N T + G +R+N + +D +TA R D
Sbjct: 213 NSPDDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGRED 272
Query: 199 KFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEE------------FKNYV-- 244
++ +RP TD A +A V+I EN+ D+ F+ + G++E +K Y+
Sbjct: 273 EWLPIRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILG 332
Query: 245 -----IKLSLNYVSQETGVEVEEIREFAREFAEKK-GIIHIGYGFQRSLAGGEAVRAIAI 298
I + + ++ T + E+I + ARE K I G+G QR G + RAIA+
Sbjct: 333 EGPDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAM 392
Query: 299 LPALVGHRFGFIYDMKTI-----DKSYAEAKFLRTKPELRIPQMELTEAIEDGR------ 347
L L G+ G + D L + +I T+AI+ G
Sbjct: 393 LSVLTGN-VGINGGNSGVREGSWDLGVEWFPMLENPVKTQISVFTWTDAIDHGTEMTATR 451
Query: 348 ------------VKFLYIYNSNPLAS-YPNQNRLRKALRKNDI--FVVTHDIFLTDTALF 392
+KFL+ Y SN L + + + N + L+ + +V D F+T +A +
Sbjct: 452 DGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTASAKY 511
Query: 393 SDVVLPANTFFERLDIVD---SYYHRYVLLNEPV--AKGPGKSNSEVTRLIAKALGIKNP 447
D++LP E+ D++ + YV+L +P AK K + +AK LG P
Sbjct: 512 CDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRLG---P 568
Query: 448 YLYE------SDEEVIR----KVLEAN--RISFEELKKKGFVKIPEGERKW--------- 486
+Y+ S E I+ K E N +EE+K G K E +
Sbjct: 569 DVYQTFTEGRSQHEWIKYLHAKTKERNPEMPDYEEMKTTGIFKKKCPEEHYVAFRAFRED 628
Query: 487 ------NTPSGKIEFYSQRAVKRG----------LSPFPEYKK--------FKGKYPLRL 522
TPSGKIE YS+R K + P P Y + YPL+L
Sbjct: 629 PQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDPLRKTYPLQL 688
Query: 523 LSPTYRMTVTSQYHNTHGIIDS---NLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKL 579
Y+ S Y N + + +++NP DA RGI+ GD V VFN NG++ K+
Sbjct: 689 TGFHYKARTHSSYGNIDVLQQACPQEVWINPIDAQARGIRHGDTVRVFNNNGEMLIAAKV 748
Query: 580 TEDVPPGVVLLYKAFWVKL--------LGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
T + PGV + + W+K G ++N LT+ + KG+ HS V++
Sbjct: 749 TPRILPGVTAIGQGAWLKADMFGDRVDHGGSINILTSHRP-SPLAKGNPSHSNLVQI 804
>pir||E64914 dimethylsulfoxide reductase (EC 1.8.-.-) chain A1 precursor,
anaerobic - Escherichia coli >gi|1742610|dbj|BAA15311.1|
(D90801) Anaerobic dimethyl sulfoxide reductase chain A
precursor (EC 1.-.-.-) (DMSO reductase). [Escherichia
coli] >gi|1742621|dbj|BAA15321.1| (D90802) Anaerobic
dimethyl sulfoxide reductase chain A precursor (EC
1.-.-.-) (DMSO reductase). [Escherichia coli]
>gi|1787870|gb|AAC74659.1| (AE000254) putative
oxidoreductase, major subunit [Escherichia coli K12]
Length = 808
Score = 175 bits (438), Expect = 2e-42
Identities = 201/765 (26%), Positives = 331/765 (42%), Gaps = 148/765 (19%)
Query: 1 MFSACMRDCYDTCSIISEFRNGKLIV-----KGNPEHPITRGFLCPKGALLPRWFHSKDR 55
++ AC +C C++ ++ ++ G+ E+ + C +G + R + DR
Sbjct: 52 VWGACSVNCGSRCALRLHVKDNEVTWVETDNTGSDEYGNHQVRACLRGRSIRRRINHPDR 111
Query: 56 LKLPLIKEGD----EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAG------DRG 105
L P+ + G +F SWD+A+ +A LK+ +++YG+E+V + +G R
Sbjct: 112 LNYPMKRVGKRGEGKFERISWDEALDTIASSLKKTVEQYGNEAVYIQYSSGIVGGNMTRS 171
Query: 106 VVNYYFPMRLFHYLNASTIDGGICDRAGQE-ALKDIYGTAVGVDPEKLKEHKLIVYWGIN 164
+ RL + S G A A+ YG+ G ++ KL+V +G N
Sbjct: 172 SPSASAVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTTDIENSKLVVMFGNN 231
Query: 165 AFWTNLHG----FMFAK---RNNLEIWTVDVVRTETAK-RSDKFFQVRPDTDVLFALGVA 216
T + G ++ K ++N ++ +D T+TA R D++ +RP TD G+A
Sbjct: 232 PAETRMSGGGITYLLEKAREKSNAKMIVIDPRYTDTAAGREDEWLPIRPGTDAALVAGIA 291
Query: 217 KVMIEENLYDEDFVRENVYGFEE------------FKNYVI-------KLSLNYVSQETG 257
V+I ENL D+ F+ + G++E +K Y++ + + SQ TG
Sbjct: 292 WVLINENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGEGDDKTAKTPQWASQITG 351
Query: 258 VEVEEIREFAREFAEKK-GIIHIGYGFQRSLAGGEAVRAIAILPALVGH------RFGFI 310
+ + I + ARE K I G+G QR G RAIA+LP L G+ G
Sbjct: 352 IPEDRIIKLAREIGTAKPAYICQGWGPQRQANGELTARAIAMLPILTGNVGISGGNSGAR 411
Query: 311 YDMKTIDKSYAEAKFLRTKPELRIPQMELTEAIEDGR------------------VKFLY 352
TI + L + I T+AI+ G +KF++
Sbjct: 412 ESTYTI--TIERLPVLDNPVKTSISCFSWTDAIDHGPQMTAIRDGVRGKDKLDVPIKFIW 469
Query: 353 IYNSNPLAS-YPNQNRLRKALR---KNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDI 408
Y N L + + + N+ + L+ K ++ VV + F+T +A ++D++LP E+ DI
Sbjct: 470 NYAGNTLVNQHSDINKTHEILQDESKCEMIVVIEN-FMTSSAKYADILLPDLMTVEQEDI 528
Query: 409 VDSYYHR---YVLLNEPVA--KGPGKSNSEVTRLIAKALGIKNPYLYESDEE-------- 455
+ + Y Y++ +PV K K + +AK LG P +Y+ E
Sbjct: 529 IPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKRLG---PDVYQKFTEGRTQEQWL 585
Query: 456 --VIRKVLEANRI--SFEELKKKGFVKI--PEGE-------------RKWNTPSGKIEFY 496
+ K+L + S++ELKK G K P G TPSGKIE Y
Sbjct: 586 QHLYAKMLAKDPALPSYDELKKMGIYKRKDPNGHFVAYKAFRDDPEANPLKTPSGKIEIY 645
Query: 497 SQRAVKRG----------LSPFPEYKK-FKG-------KYPLRLLSPTYRMTVTSQYHNT 538
S R + +SP P Y F+G +PL+L Y+ S+ H+T
Sbjct: 646 SSRLAEIARTWELEKDEVISPLPVYASTFEGWNSPERRTFPLQLFGFHYK----SRTHST 701
Query: 539 HGIID-------SNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLY 591
+G ID +++NP DA +RGI +GD V VFN G+++ K+T + PGV +
Sbjct: 702 YGNIDLLKAACRQEVWINPIDAQKRGIANGDMVRVFNHRGEVRLPAKVTPRILPGVSAMG 761
Query: 592 KAFWVKL--------LGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
+ W + G VN LTT + KG+ H+ VE+
Sbjct: 762 QGAWHEANMSGDKIDHGGCVNTLTT-LRPSPLAKGNPQHTNLVEI 805
>gb|AAD37319.1|AF135170_10 (AF135170) dimethyl sulfoxide reductase subunit A [Yersinia pestis]
Length = 823
Score = 173 bits (435), Expect = 4e-42
Identities = 195/761 (25%), Positives = 326/761 (42%), Gaps = 137/761 (18%)
Query: 1 MFSACMRDCYDTCSIISEFRNG--KLIVKGNPEHPITRGF----LCPKGALLPRWFHSKD 54
++SAC +C C + +G K + N G C +G + R ++ D
Sbjct: 68 IWSACTVNCGSRCPLRMHVADGEIKYVETDNTGDDDFEGLHQVRACLRGRSMRRRVYNPD 127
Query: 55 RLKLPLIKEG----DEFNETSWDKAISLVAEKLKEMIKEYGSESV-LVYKYAGDRGVVNY 109
RLK P+ + G +F SW++A +A ++ +IKEYG+E++ L Y G +
Sbjct: 128 RLKYPMKRIGARGEGKFKRISWEEAFETIAGSMQNIIKEYGNEAIYLNYGTGTIGGTMTR 187
Query: 110 YFPMRLFHYLNASTIDGGICDRAGQEALKDIY--------GTAVGVDPEKLKEHKLIVYW 161
+P GG ++ G + I G A G P ++ KL+V +
Sbjct: 188 SWPPGATLLARLMNCCGGYLNQYGDYSTAQIAAGLNYTYGGWADGNSPSDIENSKLVVLF 247
Query: 162 GINAFWTNLHGF-------MFAKRNNLEIWTVDVVRTETAK-RSDKFFQVRPDTDVLFAL 213
G N T + G +++N ++ +D T+TA R D++ +RP TD A
Sbjct: 248 GNNPAETRMSGGGVTYYLEQAREKSNAKMIVIDPRYTDTAAGREDEWIPLRPGTDAALAS 307
Query: 214 GVAKVMIEENLYDEDFVRENVYGFEE------------FKNYVIKLSLNYVSQE------ 255
+A VMI ENL D+ F+ + G++E +K Y++ + ++
Sbjct: 308 ALAYVMITENLVDQPFLDQYCVGYDEKTLPEGAPENSHYKAYILGQGADKTAKTPQWAAA 367
Query: 256 -TGVEVEEIREFAREFAE-KKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH-------- 305
TG+ +I RE K I G+G QR G RAIA+L L G+
Sbjct: 368 ITGIPAAKIITLGREIGSVKPAYISQGWGPQRHSNGENTSRAIAMLAILTGNVGINGGNS 427
Query: 306 --RFGFIYDMKTIDKSYAE-------AKFLRTKPELRIPQMELTEAIEDGR------VKF 350
R G Y + + E + FL T R P+M T G+ +KF
Sbjct: 428 GAREGS-YSLPFVRMPTFENPVKTSISMFLWTDAIERGPEMTATRDGVQGKDKLDVPIKF 486
Query: 351 LYIYNSNPLASYPNQ-NRLRKALR--KNDIFVVTHDIFLTDTALFSDVVLPANTFFERLD 407
++ Y SN L + ++ NR L+ K +V D +T +A ++D++LP T E++D
Sbjct: 487 IWNYASNCLVNQHSEINRTHDILQDDKKCEMIVVIDNHMTSSAEYADIILPDCTASEQMD 546
Query: 408 I---VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKALGIKNPYLY-ESDEEVIRKVL 461
S YV+ + V K K+ ++T +A+ +G++ + + EE +R +
Sbjct: 547 FCLDASSGNMAYVIFADQVIKPRFECKNIYDITSGLARHMGVEQKFTEGRTQEEWMRHLY 606
Query: 462 EANRI------SFEELKKKGFVKI--PEGER-------------KWNTPSGKIEFYSQRA 500
+ ++ SFE+ + +G K P G +TPSGKIE YS
Sbjct: 607 QQSQAAIPELPSFEDFRAQGMFKKRDPAGHHVAYHDFRTDPVANPLSTPSGKIEIYSAAL 666
Query: 501 VKRG----------LSPFPEYKK-FKG-------KYPLRLLSPTYRMTVTSQYHNTHGII 542
+ + P P Y F+ +YPL+L Y+ ++ H+T+G +
Sbjct: 667 AEIAATWELQKDDVIDPLPVYAAGFESHVDPLIEQYPLQLTGFHYK----ARTHSTYGNV 722
Query: 543 D-------SNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFW 595
D +++NP DA RGI +GD V +FN G+++ K+T + PGVV L + W
Sbjct: 723 DVLKASCLQEMWINPMDAERRGISNGDMVRIFNGRGEVQINAKVTPRMMPGVVALGEGAW 782
Query: 596 VKL------LGWNVNFLTTDKKVEKYGKGSAFHSTWVEVIR 630
++N LTT ++ KG+ H+ V+V +
Sbjct: 783 YSPDAKRIDRAGSINVLTT-QRPSPLAKGNPSHTNLVQVAK 822
>pdb|1EU1|A Chain A, The Crystal Structure Of Rhodobacter Sphaeroides
Dimethylsulfoxide Reductase Reveals Two Distinct
Molybdenum Coordination Environments
Length = 780
Score = 164 bits (411), Expect = 3e-39
Identities = 180/716 (25%), Positives = 286/716 (39%), Gaps = 142/716 (19%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F +WD+A+ LVA +LK + + YG
Sbjct: 50 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYGPTGT 109
Query: 96 L--VYKYAGDRGVVNYYFPMRLFHYLNASTID--GGICDRAGQEALKDIYGTAVGVD--- 148
Y + + N MR L ++ G A Q + + GT +
Sbjct: 110 FGGSYGWKSPGRLHNCQVLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLEVYEQQT 169
Query: 149 --PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDVVRTETAK 195
P ++ L+V+W + TN G++ K + ++ VRTETA
Sbjct: 170 AWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIXINPVRTETAD 229
Query: 196 R-SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLS------ 248
RP TDV LG+A + E+L+D+DF+ GF+ F Y+ S
Sbjct: 230 YFGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKT 289
Query: 249 LNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH--- 305
+ ++ G+ E+IRE AR F + ++ G+ QR G +A + L +++G
Sbjct: 290 AEWAAEICGLPAEQIRELARSFVAGRTMLAAGWSIQRMHHGEQAHWMLVTLASMIGQIGL 349
Query: 306 ---RFGFIYDMK-----TID-----------KSYAEAKFLRTKPELRIPQMELTEAIEDG 346
FG Y T D K+ A +L IP + + + +
Sbjct: 350 PGGGFGLSYHYSNGGSPTSDGPALGGISDGGKAVEGAAWLSESGATSIPCARVVDMLLNP 409
Query: 347 R--------------VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALF 392
VK Y NP A + ++NR+ KA K + F+V D T TA
Sbjct: 410 GGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIV-QDFQWTATARH 468
Query: 393 SDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKALGIKNPY 448
+D+VLPA T +ER DI V Y +R +L + V +S+ ++ +A+ LG +
Sbjct: 469 ADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKGAEF 528
Query: 449 LYESDE--------EVIRKVLEANRI---SFEELKKKGFVKIPEGE-------------- 483
DE E K E + SFE+ +G V+ P E
Sbjct: 529 TEGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFREDP 588
Query: 484 --RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPLRLLSPTYRMTV 531
TPSG IE YS+ K G P + + KYPL +++ + +
Sbjct: 589 LFNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGAGAKYPLHVVASHPKSRL 648
Query: 532 TSQYHNTHGIIDSNLY---------MNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTED 582
SQ + T +LY +NP DAA RGI DGD + VFN+ G+I K+++
Sbjct: 649 HSQLNGTSL---RDLYAVAGHEPCLINPADAAARGIADGDVLRVFNDRGQILVGAKVSDA 705
Query: 583 VPPGVVLLYKAFWVKLLG----------WNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
V PG + +Y+ W L +VN L+ D K +G+ + +V
Sbjct: 706 VMPGAIQIYEGGWYDPLDPSEEGTLDKYGDVNVLSLDVGTSKLAQGNCGQTILADV 761
>sp|Q57366|DMSA_RHOSH DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMSO REDUCTASE) (DMSOR)
>gi|2126478|pir||S70012 methionine-S-oxide reductase (EC
1.8.4.5) precursor - Rhodobacter sphaeroides
>gi|2126485|pir||JC4322 methionine-S-oxide reductase (EC
1.8.4.5) - Rhodobacter sphaeroides
>gi|1139564|dbj|BAA07615.1| (D38634) dimethyl sulfoxide
reductase precursor [Rhodobacter sphaeroides]
>gi|1161236|gb|AAB07230.1| (L46851) dimethyl sulfoxide
reductase [Rhodobacter sphaeroides]
Length = 822
Score = 164 bits (410), Expect = 4e-39
Identities = 180/716 (25%), Positives = 286/716 (39%), Gaps = 142/716 (19%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F +WD+A+ LVA +LK + + YG
Sbjct: 92 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYGPTGT 151
Query: 96 L--VYKYAGDRGVVNYYFPMRLFHYLNASTID--GGICDRAGQEALKDIYGTAVGVD--- 148
Y + + N MR L ++ G A Q + + GT +
Sbjct: 152 FGGSYGWKSPGRLHNCQVLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLEVYEQQT 211
Query: 149 --PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDVVRTETAK 195
P ++ L+V+W + TN G++ K + ++ VRTETA
Sbjct: 212 AWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVRTETAD 271
Query: 196 R-SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLS------ 248
RP TDV LG+A + E+L+D+DF+ GF+ F Y+ S
Sbjct: 272 YFGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKT 331
Query: 249 LNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH--- 305
+ ++ G+ E+IRE AR F + ++ G+ QR G +A + L +++G
Sbjct: 332 AEWAAEICGLPAEQIRELARSFVAGRTMLAAGWSIQRMHHGEQAHWMLVTLASMIGQIGL 391
Query: 306 ---RFGFIYDMK-----TID-----------KSYAEAKFLRTKPELRIPQMELTEAIEDG 346
FG Y T D K+ A +L IP + + + +
Sbjct: 392 PGGGFGLSYHYSNGGSPTSDGPALGGISDGGKAVEGAAWLSESGATSIPCARVVDMLLNP 451
Query: 347 R--------------VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALF 392
VK Y NP A + ++NR+ KA K + F+V D T TA
Sbjct: 452 GGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIV-QDFQWTATARH 510
Query: 393 SDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKALGIKNPY 448
+D+VLPA T +ER DI V Y +R +L + V +S+ ++ +A+ LG +
Sbjct: 511 ADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKGAEF 570
Query: 449 LYESDE--------EVIRKVLEANRI---SFEELKKKGFVKIPEGE-------------- 483
DE E K E + SFE+ +G V+ P E
Sbjct: 571 TEGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFREDP 630
Query: 484 --RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPLRLLSPTYRMTV 531
TPSG IE YS+ K G P + + KYPL +++ + +
Sbjct: 631 LFNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGAGAKYPLHVVASHPKSRL 690
Query: 532 TSQYHNTHGIIDSNLY---------MNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTED 582
SQ + T +LY +NP DAA RGI DGD + VFN+ G+I K+++
Sbjct: 691 HSQLNGTSL---RDLYAVAGHEPCLINPADAAARGIADGDVLRVFNDRGQILVGAKVSDA 747
Query: 583 VPPGVVLLYKAFWVKLLG----------WNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
V PG + +Y+ W L +VN L+ D K +G+ + +V
Sbjct: 748 VMPGAIQIYEGGWYDPLDPSEEGTLDKYGDVNVLSLDVGTSKLAQGNCGQTILADV 803
>gb|AAB94874.1| (AF016236) DMSO/TMAO-reductase [Rhodobacter sphaeroides]
Length = 822
Score = 163 bits (409), Expect = 5e-39
Identities = 185/723 (25%), Positives = 295/723 (40%), Gaps = 156/723 (21%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F +WD+A+ LVA++LK + + YG
Sbjct: 92 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVAKELKRVQESYGPTGT 151
Query: 96 LVYKYAGDRGVVNYYFPMRLFH----YLNASTIDGGICDRAG-------QEALKDIYGTA 144
+ G G N P RL + A + GG + +G Q + + GT
Sbjct: 152 ----FGGSYGWKN---PGRLHNCQVLMRRALNLAGGFVNSSGDYSTGAAQIIMPHVMGTL 204
Query: 145 VGVD-----PEKLKEHKLIVYWGINAFWTNLHGFM------FA-----KRNNLEIWTVDV 188
+ P + +L+V+W + TN G++ FA K ++ ++
Sbjct: 205 EVYEQQTAWPVVVDNTELMVFWAADPVKTNQIGWVVPDHGAFAGMQAMKEKGTKVICINP 264
Query: 189 VRTETAKR-SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKL 247
VRTETA + RP TDV LG+A + E+L+D+DF+ GF+ F Y+
Sbjct: 265 VRTETADYFGAELVSPRPQTDVALMLGMAHTLYSEDLHDKDFIENCTSGFDIFAAYLTGE 324
Query: 248 S------LNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPA 301
S + ++ G+ E+I+E AR F + ++ G+ QR G +A + L +
Sbjct: 325 SDGTPKTAEWAAEICGLPAEQIKELARRFVGGRTMLAAGWSIQRMHHGEQAHWMLVTLAS 384
Query: 302 LVGH------RFGFIYDMK-----TID----------------KSYAEAKFLRTKPELRI 334
++G FG Y T D ++ A + P R+
Sbjct: 385 MIGQIGLPGGGFGLSYHYSNGGSPTSDGPALGGISDGGKPVEGAAWLSASGAASIPCARV 444
Query: 335 PQMELTEAIE---DGR------VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIF 385
M L E +G VK Y NP A + ++NR+ KA K + F+V D
Sbjct: 445 VDMLLNPGGEFQFNGATATYPDVKLAYWVGGNPFAHHQDRNRMLKAWEKLETFIV-QDFQ 503
Query: 386 LTDTALFSDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKA 441
T TA +D+VLPA T +ER DI V Y +R +L + V +S+ ++ + +
Sbjct: 504 WTATARHADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALTER 563
Query: 442 LGIKNPYLYESDE--------EVIRKVLEANRI---SFEELKKKGFVKIPEGE------- 483
LG + DE E K E ++ SFE+ +G V+ P E
Sbjct: 564 LGKGKEFTEGRDEMGWISSFYEAAVKQAEFKQMEMPSFEDFWSEGIVEFPITEGANFVRY 623
Query: 484 ---------RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPLRLLS 524
TPSG IE YS+ K G P + + KYPL +++
Sbjct: 624 ADFREDPLFNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGPGAKYPLHVVA 683
Query: 525 PTYRMTVTSQYHNTHGIIDSNLY---------MNPKDAAERGIKDGDEVIVFNENGKIKT 575
+ SQ + T +LY +NP DAA RGI DGD + VFN+ G+I
Sbjct: 684 SHPNSRLHSQLNGTSL---RDLYAVAGHEPCLINPDDAAARGIADGDVLRVFNDRGQILV 740
Query: 576 KIKLTEDVPPGVVLLYKAFWVKLLG----------WNVNFLTTDKKVEKYGKGSAFHSTW 625
K+++ V PG + +Y+ W L +VN L+ D K +G+ +
Sbjct: 741 GAKVSDAVMPGAIQVYEGGWYDPLDPSEEGTLDKYGDVNVLSLDVGTSKLAQGNCGQTIL 800
Query: 626 VEV 628
+V
Sbjct: 801 ADV 803
>gb|AAB18330.1| (U73807) formate dehydrogenase alpha subunit [Moorella
thermoacetica]
Length = 893
Score = 163 bits (409), Expect = 5e-39
Identities = 174/661 (26%), Positives = 284/661 (42%), Gaps = 107/661 (16%)
Query: 9 CYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDE- 66
C C++ ++GK++ V+G + G+LC KG + H+ DR+ PLI+EGD
Sbjct: 231 CGVGCNLTLYVKDGKVVKVRGYENPEVNNGWLCVKGRFGFDYIHNPDRITRPLIREGDRE 290
Query: 67 ---FNETSWDKAISLVAEKLKEMIKEYGSESV--------------LVYKYA-GDRGVVN 108
F E SW++A++LV++KL ++ YGSE++ L+ K A G G N
Sbjct: 291 KGYFREASWEEALALVSQKLTQIKGSYGSEALGFLCSAKCTNEENYLLQKLARGVLGTNN 350
Query: 109 YYFPMRLFHYLNASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWT 168
RL H +ST+ G+ G A+ + D I G N T
Sbjct: 351 VDHCARLXH---SSTV-AGLATTFGSGAMTNSIADIASAD--------CIFVIGSNT--T 396
Query: 169 NLHGFMFAK-----RNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEEN 223
H + K R + D R E S + + +P TD+ G+ V+I+E
Sbjct: 397 ENHPVIALKVKEAVRRGARLIVADPRRIELVNFSYLWLRQKPGTDLALLNGLLHVIIKEE 456
Query: 224 LYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAE-KKGIIHIGYG 282
LYD++F+ + GFE K V + + VS+ TGV +I E AR +A I G
Sbjct: 457 LYDKEFIAQRTEGFEALKLAVEEYTPAKVSEVTGVPAGDIIEAARTYARGPSSTILYAMG 516
Query: 283 FQRSLAGGEAVRAIAILPALVGH---------------RFGFIYDM----------KTID 317
+ + G V A+A L G DM + +
Sbjct: 517 ITQHITGTANVMALANLAMACGQVGKEGNGVNPLRGQSNVQGACDMGGLPNVLPGYQPVT 576
Query: 318 KSYAEAKFLRT--KPEL----RIPQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKA 371
KF T P+L + ME+ A ++G++K +YI NP+ + P+ + +++A
Sbjct: 577 DPGVRHKFSETWGVPDLPGEPGLTLMEMMAAAQEGKLKGMYILGENPVLTDPDVSHVKEA 636
Query: 372 LRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSN 431
L KN F+V DIFLT+TA +DVVLP +F E+ S R LL++ + + PG++
Sbjct: 637 L-KNLEFLVVQDIFLTETARMADVVLPGASFAEKEGTFTSTERRVQLLHKAI-EPPGEAR 694
Query: 432 SEVTRLIAKALGIKNPYLYESDEEVIRKVLEAN----RISFEELKKKGFVKIPEGERKWN 487
+ L L + P Y S E+++++ I++E L+ KG
Sbjct: 695 PDWLILNDLLLLMGYPRKYSSPGEIMQEIAGLTPSYAGITYERLEDKGLQWPVLSLEHPG 754
Query: 488 TPSGKIEFYSQRAVKRGLSPF------PEYKKFKGKYPLRLLSPTYRMTVTSQYHNTHGI 541
TP E +S RG F P ++ +YP + T ++ H +
Sbjct: 755 TPVLHREKFS-----RGYGQFQVVHYRPPAEEPDEEYP-------FLFTTGRNLYHYHTV 802
Query: 542 IDSN------------LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVL 589
I + +N DAA GI++G+ + + + GK++ K +T+ +P G V
Sbjct: 803 ISRKSRGLEEMCPAPVVEINDNDAARLGIREGEMIEIVSRRGKVRVKALVTDRIPRGQVF 862
Query: 590 L 590
+
Sbjct: 863 M 863
>emb|CAA64689.1| (X95407) dimethyl sulfoxide/trimethylamine N-oxide reductase
[Rhodobacter capsulatus]
Length = 794
Score = 162 bits (405), Expect = 1e-38
Identities = 182/734 (24%), Positives = 301/734 (40%), Gaps = 162/734 (22%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F SWD+A+ LVA ++K + + YG + V
Sbjct: 63 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPQGV 122
Query: 96 LVYKYAGDRGVVNYYFPMRLFHYLNAS----TIDGGICDRAG-------QEALKDIYGTA 144
+ G G + P RL + T+ GG + AG Q + + GT
Sbjct: 123 ----FGGSYG---WKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTL 175
Query: 145 VGVD-----PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDV 188
+ P + +++V+W + T+ G++ K ++ +D
Sbjct: 176 EVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDP 235
Query: 189 VRTETAKRSDKFFQV-----RPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNY 243
VRT+T + FF +P TDV LG+A ++ E+LYD+DF+ GF++F Y
Sbjct: 236 VRTKTVE----FFGADHVTPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPY 291
Query: 244 VI------KLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIA 297
++ + + S +GV E I+E AR F K+ ++ G+ QR G +A +
Sbjct: 292 LMGETDSTPKTAEWASDISGVPAETIKELARLFKSKRTMLAAGWSMQRMHHGEQAHWMLV 351
Query: 298 ILPALVGH------RFGFIYD-------------MKTIDKSYAEAK---FLRTKPELRIP 335
L +++G FG Y + I A K +L IP
Sbjct: 352 TLASMLGQIGLPGGGFGLSYHYSGGGTPSSSGPALSGITDGGAATKGPEWLAASGASVIP 411
Query: 336 QMELTEAIED--------------GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVT 381
+ + +E+ VK Y NP + ++NR+ KA K + F+V
Sbjct: 412 VARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFIV- 470
Query: 382 HDIFLTDTALFSDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRL 437
HD T TA +D+VLPA T +ER DI + Y + +L + + + +S+ ++
Sbjct: 471 HDFQWTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAA 530
Query: 438 IAKALGIKNPYLYESDE--------EVIRKVLEANRI---SFEELKKKGFVKIPEGE--- 483
+A+ LG + DE + K +A + +F+ +G V+ P +
Sbjct: 531 VAERLGKGKEFTEGKDEMGWIKSFYDDAAKQGKAGGVEMPAFDAFWAEGIVEFPVTDGAD 590
Query: 484 -------------RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPL 520
TP+G IE YS+ K G P + + KYPL
Sbjct: 591 FVRYASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPL 650
Query: 521 RLLS--PTYRM------TVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENGK 572
+ + P R+ TV + + G M+P DAA RGI DGD V V N+ G+
Sbjct: 651 HIAASHPFNRLHSQLNGTVLREGYAVQG--HEPCLMHPDDAAARGIADGDVVRVHNDRGQ 708
Query: 573 IKTKIKLTEDVPPGVVLLYKAFW-----VKLLG-----WNVNFLTTDKKVEKYGKGSAFH 622
I T +K+T+ V GV+ +Y+ W V G +VN L+ D K +G+
Sbjct: 709 ILTGVKVTDAVMKGVIQIYEGGWYDPSDVTEAGTLDKYGDVNVLSADIGTSKLAQGNCGQ 768
Query: 623 STWVEVIRCGEPGV 636
+ EV + P V
Sbjct: 769 TVLAEVEKYTGPAV 782
>pdb|1DMS| Structure Of Dmso Reductase
Length = 781
Score = 162 bits (405), Expect = 1e-38
Identities = 182/734 (24%), Positives = 301/734 (40%), Gaps = 162/734 (22%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F SWD+A+ LVA ++K + + YG + V
Sbjct: 50 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPQGV 109
Query: 96 LVYKYAGDRGVVNYYFPMRLFHYLNAS----TIDGGICDRAG-------QEALKDIYGTA 144
+ G G + P RL + T+ GG + AG Q + + GT
Sbjct: 110 ----FGGSYG---WKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTL 162
Query: 145 VGVD-----PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDV 188
+ P + +++V+W + T+ G++ K ++ +D
Sbjct: 163 EVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDP 222
Query: 189 VRTETAKRSDKFFQV-----RPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNY 243
VRT+T + FF +P TDV LG+A ++ E+LYD+DF+ GF++F Y
Sbjct: 223 VRTKTVE----FFGADHVTPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPY 278
Query: 244 VI------KLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIA 297
++ + + S +GV E I+E AR F K+ ++ G+ QR G +A +
Sbjct: 279 LMGETDSTPKTAEWASDISGVPAETIKELARLFKSKRTMLAAGWSMQRMHHGEQAHWMLV 338
Query: 298 ILPALVGH------RFGFIYD-------------MKTIDKSYAEAK---FLRTKPELRIP 335
L +++G FG Y + I A K +L IP
Sbjct: 339 TLASMLGQIGLPGGGFGLSYHYSGGGTPSSSGPALSGITDGGAATKGPEWLAASGASVIP 398
Query: 336 QMELTEAIED--------------GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVT 381
+ + +E+ VK Y NP + ++NR+ KA K + F+V
Sbjct: 399 VARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFIV- 457
Query: 382 HDIFLTDTALFSDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRL 437
HD T TA +D+VLPA T +ER DI + Y + +L + + + +S+ ++
Sbjct: 458 HDFQWTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAA 517
Query: 438 IAKALGIKNPYLYESDE--------EVIRKVLEANRI---SFEELKKKGFVKIPEGE--- 483
+A+ LG + DE + K +A + +F+ +G V+ P +
Sbjct: 518 VAERLGKGKEFTEGKDEMGWIKSFYDDAAKQGKAGGVEMPAFDAFWAEGIVEFPVTDGAD 577
Query: 484 -------------RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPL 520
TP+G IE YS+ K G P + + KYPL
Sbjct: 578 FVRYASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPL 637
Query: 521 RLLS--PTYRM------TVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENGK 572
+ + P R+ TV + + G M+P DAA RGI DGD V V N+ G+
Sbjct: 638 HIAASHPFNRLHSQLNGTVLREGYAVQG--HEPCLMHPDDAAARGIADGDVVRVHNDRGQ 695
Query: 573 IKTKIKLTEDVPPGVVLLYKAFW-----VKLLG-----WNVNFLTTDKKVEKYGKGSAFH 622
I T +K+T+ V GV+ +Y+ W V G +VN L+ D K +G+
Sbjct: 696 ILTGVKVTDAVMKGVIQIYEGGWYDPSDVTEAGTLDKYGDVNVLSADIGTSKLAQGNCGQ 755
Query: 623 STWVEVIRCGEPGV 636
+ EV + P V
Sbjct: 756 TVLAEVEKYTGPAV 769
>sp|Q52675|DMSA_RHOCA DIMETHYL SULFOXIDE REDUCTASE PRECURSOR (DMSO REDUCTASE) (DMSOR)
>gi|2981245|gb|AAD13674.1| (U49506) dimethyl sulfoxide
reductase dorA [Rhodobacter capsulatus]
Length = 823
Score = 161 bits (403), Expect = 2e-38
Identities = 180/734 (24%), Positives = 299/734 (40%), Gaps = 162/734 (22%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F SWD+A+ LVA ++K + + YG + V
Sbjct: 92 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPQGV 151
Query: 96 LVYKYAGDRGVVNYYFPMRLFHYLNAS----TIDGGICDRAG-------QEALKDIYGTA 144
+ G G + P RL + T+ GG + AG Q + + GT
Sbjct: 152 ----FGGSYG---WKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTL 204
Query: 145 VGVD-----PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDV 188
+ P + +++V+W + T+ G++ K ++ +D
Sbjct: 205 EVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDP 264
Query: 189 VRTETAKRSDKFFQV-----RPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNY 243
VRT+T + FF +P TDV LG+A ++ E+LYD+DF+ GF++F Y
Sbjct: 265 VRTKTVE----FFGADHVTPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPY 320
Query: 244 VI------KLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIA 297
++ + + S +GV E I+E AR F K+ ++ G+ QR G +A +
Sbjct: 321 LMGETDSTPKTAEWASDISGVPAETIKELARLFISKRTMLAAGWSMQRMHHGEQAHWMLV 380
Query: 298 ILPALVGH------RFGFIYD-------------MKTIDKSYAEAK---FLRTKPELRIP 335
L +++G FG Y + I A K +L IP
Sbjct: 381 TLASMLGQIGLPGGGFGLSYHYSGGGTPSTSGPALSGITDGGAATKGPEWLAASGASVIP 440
Query: 336 QMELTEAIED--------------GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVT 381
+ + +E+ VK Y NP + ++NR+ KA K + F+V
Sbjct: 441 VARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFIV- 499
Query: 382 HDIFLTDTALFSDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRL 437
HD T TA +D+VLPA T +ER DI + Y + +L + + + +S+ ++
Sbjct: 500 HDFQWTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAA 559
Query: 438 IAKALGIKNPYLYESDE--------EVIRKVLEANRI---SFEELKKKGFVKIPEGE--- 483
+A+ LG + DE + K +A + +F+ +G V+ P +
Sbjct: 560 VAERLGKGKEFTEGKDEMGWIKSFYDDAAKQGKAGGVEMPAFDAFWAEGIVEFPVTDGAD 619
Query: 484 -------------RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPL 520
TP+G IE YS+ K G P + + KYPL
Sbjct: 620 FVRYASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPL 679
Query: 521 RLLS--PTYRM------TVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENGK 572
+ + P R+ TV + + G M+P DAA RGI DGD V V N+ G+
Sbjct: 680 HIAASHPFNRLHSQLNGTVLREGYAVQG--HEPCLMHPDDAAARGIADGDVVRVHNDRGQ 737
Query: 573 IKTKIKLTEDVPPGVVLLYKAFWVKLLG----------WNVNFLTTDKKVEKYGKGSAFH 622
I T +K+T+ V GV+ +Y+ W +VN L+ D K +G+
Sbjct: 738 ILTGVKVTDAVMKGVIQIYEGGWYDPSDVTEPGTLDKYGDVNVLSADIGTSKLAQGNCGQ 797
Query: 623 STWVEVIRCGEPGV 636
+ EV + P V
Sbjct: 798 TVLAEVEKYTGPAV 811
>dbj|BAB04334.1| (AP001509) assimilatory nitrate reductase (catalytic subunit)
[Bacillus halodurans]
Length = 743
Score = 160 bits (401), Expect = 4e-38
Identities = 152/620 (24%), Positives = 280/620 (44%), Gaps = 61/620 (9%)
Query: 29 NPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLVAEKLKEMIK 88
N + P + G LC KG + ++R++ PL+K G F ETSW+ A+ L+AE+ K + K
Sbjct: 52 NKQDPTSEGRLCIKGVHAHQHTVHRERIRQPLVKTGGAFVETSWEVALGLIAERFKRLQK 111
Query: 89 EYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID--GGICDRAGQEALKDIYGTAVG 146
YG ++V V+ Y L ID G C + A +G G
Sbjct: 112 SYGQDAVGVFGGGSLTNEEAYLLGKFARLALGTRYIDYNGRYCMSSAAAAANLTFGVDRG 171
Query: 147 VDPE--KLKEHKLIVYWGINAFW---TNLHGFMFAKRNNLEIWTVDVVRTETAKRSDKFF 201
+ E ++++ + IV G N T + AK+N I +D T T K ++
Sbjct: 172 LTNELREVEDAECIVLAGTNLAECQPTLMPYLRRAKKNGAFIIVLDPRETGTTKIANLHL 231
Query: 202 QVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEVE 261
+ +P TD A G+ KV+IEE L D F+ GFE+ ++ + +++L ++ GV E
Sbjct: 232 KPKPGTDGAIAAGMLKVLIEEELIDRTFIEARTNGFEQVESELQEIALAELALAAGVPEE 291
Query: 262 EIREFAREFAE-KKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH--RFGFIYDMKT--- 315
+IRE A F E + G+I G ++ G VR + G R+ Y T
Sbjct: 292 QIREAAIRFGEAQTGMIFTARGVEQQATGTADVRQFLHILLATGKIGRYACGYGAVTGQG 351
Query: 316 ------------------------IDKSYAEAKF---LRTKPELRIPQMELTEAIEDGRV 348
D++Y + + + P + EL + I+ V
Sbjct: 352 NGQGGREHGQKADQLPGYRSIESPEDRAYIASVWNVEEKDIPRKGVSAFELFQKIDQQDV 411
Query: 349 KFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDI 408
+ ++I SNP+ S P++N +++AL + D+ VV D+F+++TA ++D++LP ++ E
Sbjct: 412 RGMFIMGSNPVLSSPHENLVKRALSRLDVLVVV-DMFISETAEYADIILPTTSYLEDEGT 470
Query: 409 VDSYYHRYVLLNEPVAK---GPGKSNSEVTRLIAKALGIKNPYLYESDEEVIRKVLEANR 465
+ ++ R V + P +K G K + ++ +A+AL + + + S EE+ ++ A++
Sbjct: 471 MTNFEGRVV--HRPGSKPPFGKAKHDWQILCELAEALDRSHGFQFSSPEEIFNELCLASK 528
Query: 466 --------ISFEELKKKGFV-KIPEGERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKG 516
+S+E++K +G + P E + + FY++ + S
Sbjct: 529 GGKADYSGLSYEKIKGEGVLWPCPTKEHEGTGRLFEDRFYTEDGRAQFGSVHCPVDSEND 588
Query: 517 KYPLRLLSPTYRMTVTS--QYHNTHGII----DSNLYMNPKDAAERGIKDGDEVIVFNEN 570
+YP+ L + S Q + ++ + + ++P+ A+ I+D D V+V +
Sbjct: 589 EYPILLTTGRVLTQYLSGTQTRRSDALLFKEPEPFVLLHPETASSYQIQDEDWVMVRSPY 648
Query: 571 GKIKTKIKLTEDVPPGVVLL 590
G+ K K + +E + V +
Sbjct: 649 GEAKLKARQSEGIREDTVFV 668
>gb|AAK42934.1| Formate dehydrogenase Alpha subunit (fdhF-2) [Sulfolobus
solfataricus]
Length = 979
Score = 159 bits (398), Expect = 9e-38
Identities = 160/620 (25%), Positives = 273/620 (43%), Gaps = 71/620 (11%)
Query: 24 LIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLVAEKL 83
L ++ PE P C KG + +S +R+ PLI+EGD+F E SWD+AIS +A++L
Sbjct: 283 LKIEPKPESPANGILTCVKGKFGWDFVNSSERITKPLIREGDKFREASWDEAISYIAKRL 342
Query: 84 KEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTIDGGI--CDRAGQEALKDIY 141
KE+ + YG +S+ Y + + +D C L
Sbjct: 343 KEIKERYGPDSIGFIASDKMSNEEAYLLQKLARAIIGTNNVDNSARYCQSPATVGLWRTV 402
Query: 142 GTAVGVDPEKLKEHK---LIVYWGINAFWTNLHGFMFAKR------NNLEIWTVDVVRTE 192
G +G D +++ + LIV G N T H + +K N +I +DV + E
Sbjct: 403 G--IGADSGTIRDIENANLIVIVGHNT--TESHPVIGSKVKRAKKINGSKIVVIDVRKHE 458
Query: 193 TAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYV 252
A+++D F + +P TD GVAK +I++ D++F+ + V GFEEFK + +L+YV
Sbjct: 459 IAEKADLFIKPKPGTDAAVLAGVAKYLIDQGWIDKEFIDKRVNGFEEFKESIKGFTLDYV 518
Query: 253 SQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEAVRAIAILPALVGH------ 305
TGV ++I + A + + G G + L G + I+ L + G+
Sbjct: 519 EDITGVPRDQIIKLAEMIHNANSVAVLWGMGVTQHLGGADTSTIISDLLLITGNYGKPGS 578
Query: 306 ---------------RFG----FIYDMKTIDKSYAEAKF-------LRTKPELRIPQMEL 339
FG ++ + ++ AKF L P L+IPQM
Sbjct: 579 GAFPMRGHNNVQGVSDFGCLPNYLPGYQKLEDENVIAKFEEAWGVKLNRNPGLQIPQM-- 636
Query: 340 TEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPA 399
E + +G++ LYI + + R+AL K D F+V D+F+T+TA +DV+LPA
Sbjct: 637 IEGVLEGKIHALYIVGEDTVMVDCGTPLTRQALEKVD-FLVVQDMFITETAKLADVILPA 695
Query: 400 NTFFER---LDIVDSYYHRYVLLNEPVAKGPGKSNSEVTRLIAKALGIKNPYLYESDEEV 456
E+ + R+ EP+ G K + E+ +++A ALG + Y E+
Sbjct: 696 AASLEKDGTFVNTERRIQRFYKAMEPI--GDSKPDWEIIQMVANALGAN--WSYNHPAEI 751
Query: 457 IRKVLEANRI----SFEELKKKGFVKIPEGERKWNTPSGKIEFYSQRAVKRGLSPF---- 508
+ ++ + I ++ L+ + P E +TP ++ + K L P
Sbjct: 752 MNEIAKLGPIFAGVNYSRLEGFNSLLWPVNEDGSDTPLLYTNAFATKDGKAILYPLSWKP 811
Query: 509 PEYKKFKGKYPL---RLLSPTYRMTVTSQYHNTHGIIDSNLYMNPKDAAER-GIKDGDEV 564
PE K K + R+L + +T + + K+ A + IK+GD V
Sbjct: 812 PELKDEVHKVTVNTGRVLEHFHVGNMTRRVEGLRRKVPETFVEVSKELASKYSIKNGDLV 871
Query: 565 IVFNE-NGKIKTKIKLTEDV 583
+V ++ G+IK + +++ V
Sbjct: 872 LVKSKFGGEIKARAIVSDRV 891
>pdb|1E5V|A Chain A, Oxidized Dmso Reductase Exposed To Hepes Buffer
>gi|10120736|pdb|1E5V|C Chain C, Oxidized Dmso Reductase
Exposed To Hepes Buffer >gi|2981779|pdb|1DMR| Oxidized
Dmso Reductase From Rhodobacter Capsulatus
>gi|2981904|pdb|3DMR| Structure Of Dmso Reductase From
Rhodobacter Capsulatus At Ph 7.0 >gi|2981898|pdb|2DMR|
Dithionite Reduced Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 159 bits (397), Expect = 1e-37
Identities = 179/731 (24%), Positives = 294/731 (39%), Gaps = 156/731 (21%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F SWD+A+ LVA ++K + + YG E V
Sbjct: 92 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPEGV 151
Query: 96 LVYKYAGDRGVVNYYFPMRLFHYLNAS----TIDGGICDRAG-------QEALKDIYGTA 144
+ G G + P RL + T+ GG + AG Q + + GT
Sbjct: 152 ----FGGSYG---WKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTL 204
Query: 145 VGVD-----PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDV 188
+ P + +++V+W + T+ G++ K ++ +D
Sbjct: 205 EVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDP 264
Query: 189 VRTETAKR-SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYV--- 244
VRT+T + + +P TDV LG+A ++ E+LYD+DF+ GF++F Y+
Sbjct: 265 VRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGE 324
Query: 245 ---IKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPA 301
+ + +GV E I+E AR F K+ ++ G+ QR G +A + L +
Sbjct: 325 TDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQRMHHGEQAHWMLVTLAS 384
Query: 302 LVGH------RFGFIYD-------------MKTIDKSYAEAK---FLRTKPELRIPQMEL 339
++G FG Y + I A K +L IP +
Sbjct: 385 MLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVIPVARV 444
Query: 340 TEAIED--------------GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIF 385
+ +E+ VK Y NP + ++NR+ KA K + FVV HD
Sbjct: 445 VDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVV-HDFQ 503
Query: 386 LTDTALFSDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKA 441
T TA +D+VLPA T +ER DI + Y + +L + + + +S+ ++ +A+
Sbjct: 504 WTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAER 563
Query: 442 LGIKNPYLYESDEEV------------IRKVLEANRISFEELKKKGFVKIPEGE------ 483
LG K E +E+ K +F+ +G V+ P +
Sbjct: 564 LG-KGAEFTEGKDEMGWIKSFYDDAAKQGKAAGVQMPAFDAFWAEGIVEFPVTDGADFVR 622
Query: 484 ----------RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPLRLL 523
TP+G IE YS+ K G P + + KYPL +
Sbjct: 623 YASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIA 682
Query: 524 S--PTYRM------TVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKT 575
+ P R+ TV + + G M+P DAA RGI DGD V V N+ G+I T
Sbjct: 683 ASHPFNRLHSQLNGTVLREGYAVQG--HEPCLMHPDDAAARGIADGDVVRVHNDRGQILT 740
Query: 576 KIKLTEDVPPGVVLLYKAFWVKLLG----------WNVNFLTTDKKVEKYGKGSAFHSTW 625
+K+T+ V GV+ +Y+ W +VN L+ D K +G+ +
Sbjct: 741 GVKVTDAVMKGVIQIYEGGWYDPSDVTEPGTLDKYGDVNVLSADIGTSKLAQGNCGQTVL 800
Query: 626 VEVIRCGEPGV 636
EV + P V
Sbjct: 801 AEVEKYTGPAV 811
>pdb|1E60|A Chain A, Oxidized Dmso Reductase Exposed To Hepes - Structure Ii
Buffer >gi|10120738|pdb|1E60|C Chain C, Oxidized Dmso
Reductase Exposed To Hepes - Structure Ii Buffer
>gi|10120739|pdb|1E61|A Chain A, Oxidized Dmso Reductase
Exposed To Hepes - Structure Ii Buffer
>gi|10120740|pdb|1E61|C Chain C, Oxidized Dmso Reductase
Exposed To Hepes - Structure Ii Buffer
Length = 823
Score = 159 bits (397), Expect = 1e-37
Identities = 179/731 (24%), Positives = 294/731 (39%), Gaps = 156/731 (21%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F SWD+A+ LVA ++K + + YG E V
Sbjct: 92 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPEGV 151
Query: 96 LVYKYAGDRGVVNYYFPMRLFHYLNAS----TIDGGICDRAG-------QEALKDIYGTA 144
+ G G + P RL + T+ GG + AG Q + + GT
Sbjct: 152 ----FGGSYG---WKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTL 204
Query: 145 VGVD-----PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDV 188
+ P + +++V+W + T+ G++ K ++ +D
Sbjct: 205 EVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDP 264
Query: 189 VRTETAKR-SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYV--- 244
VRT+T + + +P TDV LG+A ++ E+LYD+DF+ GF++F Y+
Sbjct: 265 VRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGE 324
Query: 245 ---IKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPA 301
+ + +GV E I+E AR F K+ ++ G+ QR G +A + L +
Sbjct: 325 TDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQRMHHGEQAHWMLVTLAS 384
Query: 302 LVGH------RFGFIYD-------------MKTIDKSYAEAK---FLRTKPELRIPQMEL 339
++G FG Y + I A K +L IP +
Sbjct: 385 MLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVIPVARV 444
Query: 340 TEAIED--------------GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIF 385
+ +E+ VK Y NP + ++NR+ KA K + FVV HD
Sbjct: 445 VDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVV-HDFQ 503
Query: 386 LTDTALFSDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKA 441
T TA +D+VLPA T +ER DI + Y + +L + + + +S+ ++ +A+
Sbjct: 504 WTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAER 563
Query: 442 LGIKNPYLYESDEEV------------IRKVLEANRISFEELKKKGFVKIPEGE------ 483
LG K E +E+ K +F+ +G V+ P +
Sbjct: 564 LG-KGAEFTEGKDEMGWIKSFYDDAAKQGKAAGVEMPAFDAFWAEGIVEFPVTDGADFVR 622
Query: 484 ----------RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPLRLL 523
TP+G IE YS+ K G P + + KYPL +
Sbjct: 623 YASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIA 682
Query: 524 S--PTYRM------TVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKT 575
+ P R+ TV + + G M+P DAA RGI DGD V V N+ G+I T
Sbjct: 683 ASHPFNRLHSQLNGTVLREGYAVQG--HEPCLMHPDDAAARGIADGDVVRVHNDRGQILT 740
Query: 576 KIKLTEDVPPGVVLLYKAFWVKLLG----------WNVNFLTTDKKVEKYGKGSAFHSTW 625
+K+T+ V GV+ +Y+ W +VN L+ D K +G+ +
Sbjct: 741 GVKVTDAVMKGVIQIYEGGWYDPSDVTEPGTLDKYGDVNVLSADIGTSKLAQGNCGQTVL 800
Query: 626 VEVIRCGEPGV 636
EV + P V
Sbjct: 801 AEVEKYTGPAV 811
>gb|AAC44820.1| (U52681) FdhA [Methanobacterium thermoformicicum]
Length = 681
Score = 159 bits (397), Expect = 1e-37
Identities = 164/620 (26%), Positives = 268/620 (42%), Gaps = 72/620 (11%)
Query: 32 HPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLVAEKLKEMIKEYG 91
HP+ G LCPKG ++ DRL PLIKE EF E SWD+A SL+A KL+E E
Sbjct: 37 HPLNEGKLCPKGNFSYQFVGRDDRLTKPLIKENGEFREASWDEATSLIASKLEEYRGE-D 95
Query: 92 SESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID--GGICDRAGQEALKDIYGT-AVGVD 148
+S+ A NY + +D +C L +G+ A+
Sbjct: 96 PDSLAFLASARCTNEENYLLQKFARAVIGTQNVDHCARLCHGPSVAGLAKTFGSGAMTNS 155
Query: 149 PEKLKEHKLIVYWGINA------FWTNLHGFMFAKRNNLEIWTVDVVRTETAKRSDKFFQ 202
++E I G N W + + AK N ++ D + TAK +D +
Sbjct: 156 ISDIEESSCIFIIGSNTAEQHPLIWRRV---LRAKANGAKLIVADPRVSPTAKMADIYLP 212
Query: 203 VRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEVEE 262
+P TDV + V+IEE L D +F+ + FE+ K V + T ++
Sbjct: 213 FKPGTDVPLMNAMMNVIIEEGLEDREFIEKRTKDFEKLKETVKNYKPEEAEKITLTPADK 272
Query: 263 IREFAREFAE-KKGIIHIGYGFQRSLAGGEAVRA---IAILPALVGHRFGFIYDM----- 313
IRE A E+A+ I G + + G + V + +A+L VG R + +
Sbjct: 273 IREAAIEYAKADSAAILFAMGITQHITGTDNVVSTANLAMLTGNVGKRGAGVNPLRGQNN 332
Query: 314 ------------------KTIDKSYAE-------AKFLRTKPELRIPQMELTEAIEDGRV 348
K I++ E L+ P L + +E+ A +G++
Sbjct: 333 VQGACDMGALPAFYPGYQKVIEEDATEKMSCAWGCSDLKCTPGLTV--VEMMNAAAEGKL 390
Query: 349 KFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDI 408
K +YI NP+ S P+ ++++L +N F+V DIFLT+TA +DVVLPA+ + E+
Sbjct: 391 KAMYIMGENPMVSDPDIQHVKESL-ENLEFLVVQDIFLTETAELADVVLPASAWSEKNGT 449
Query: 409 VDSYYHRYVLLNEPV-AKGPGKSNSEVTRLIAKALGIKNPYLYESDEEVIRKVLEANRIS 467
S R + + A G K + ++ IA +G + + + S E++ ++ E
Sbjct: 450 YTSTERRVQYIRKAADAPGEAKDDWQIICEIANKMG-ADGFKFSSAEDIFEEIREVTP-Q 507
Query: 468 FEELKKKGFVKIPEGERKW-----NTPSGKIEFYSQRAVKRGLSPF--PEYKK----FKG 516
+ + + VK PEG W P I Q A GL F EY++
Sbjct: 508 YAGMNPERLVK-PEG-LHWPCPDETHPGTPILHTEQFATPDGLGIFFPVEYREPAETPDS 565
Query: 517 KYPL-----RLLSPTYRMTVTSQYHNTHGIIDSN-LYMNPKDAAERGIKDGDEVIVFNEN 570
+YP R++ + T+T + + + + +N +DA E GIK+GD V V
Sbjct: 566 EYPFILTTGRIIFHYHTGTMTRRSETLDREVPTGFVEINDEDALELGIKNGDMVKVKTRR 625
Query: 571 GKIKTKIKLTEDVPPGVVLL 590
G+I+ ++T ++ GV+ +
Sbjct: 626 GEIEITARVTPEIMKGVLFI 645
>pdb|1E18|A Chain A, Tungsten-Susbstituted Dmso Reductase From Rhodobacter
Capsulatus
Length = 823
Score = 158 bits (395), Expect = 2e-37
Identities = 177/730 (24%), Positives = 292/730 (39%), Gaps = 154/730 (21%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F SWD+A+ LVA ++K + + YG + V
Sbjct: 92 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPQGV 151
Query: 96 LVYKYAGDRGVVNYYFPMRLFHYLNAS----TIDGGICDRAG-------QEALKDIYGTA 144
+ G G + P RL + T+ GG + AG Q + + GT
Sbjct: 152 ----FGGSYG---WKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTL 204
Query: 145 VGVD-----PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDV 188
+ P + +++V+W + T+ G++ K ++ +D
Sbjct: 205 EVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDP 264
Query: 189 VRTETAKR-SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYV--- 244
VRT+T + + +P TDV LG+A ++ E+LYD+DF+ GF++F Y+
Sbjct: 265 VRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGE 324
Query: 245 ---IKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPA 301
+ + +GV E I+E AR F K+ ++ G+ QR G +A + L +
Sbjct: 325 TDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQRMHHGEQAHWMLVTLAS 384
Query: 302 LVGH------RFGFIYD-------------MKTIDKSYAEAK---FLRTKPELRIPQMEL 339
++G FG Y + I A K +L IP +
Sbjct: 385 MLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVIPVARV 444
Query: 340 TEAIED--------------GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIF 385
+ +E+ VK Y NP + ++NR+ KA K + FVV HD
Sbjct: 445 VDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVV-HDFQ 503
Query: 386 LTDTALFSDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKA 441
T TA +D+VLPA T +ER DI + Y + +L + + + +S+ ++ +A+
Sbjct: 504 WTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAER 563
Query: 442 LGIKNPYLYESDE-----------EVIRKVLEANRISFEELKKKGFVKIPEGE------- 483
LG + DE K +F+ +G V+ P +
Sbjct: 564 LGKGKEFTEGKDEMGWIKSFYDDAAKQGKAAGVEMPAFDAFWAEGIVEFPVTDGADFVRY 623
Query: 484 ---------RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPLRLLS 524
TP+G IE YS+ K G P + + KYPL + +
Sbjct: 624 ASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIAA 683
Query: 525 --PTYRM------TVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTK 576
P R+ TV + + G M+P DAA RGI DGD V V N+ G+I T
Sbjct: 684 SHPFNRLHSQLNGTVLREGYAVQG--HEPCLMHPDDAAARGIADGDVVRVHNDRGQILTG 741
Query: 577 IKLTEDVPPGVVLLYKAFWVKLLG----------WNVNFLTTDKKVEKYGKGSAFHSTWV 626
+K+T+ V GV+ +Y+ W +VN L+ D K +G+ +
Sbjct: 742 VKVTDAVMKGVIQIYEGGWYDPSDVTEPGTLDKYGDVNVLSADIGTSKLAQGNCGQTVLA 801
Query: 627 EVIRCGEPGV 636
EV + P V
Sbjct: 802 EVEKYTGPAV 811
>pir||S66263 dimethyl sulfoxide reductase - Rhodobacter sphaeroides (fragment)
Length = 764
Score = 157 bits (393), Expect = 4e-37
Identities = 171/676 (25%), Positives = 272/676 (39%), Gaps = 137/676 (20%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F +WD+A+ LVA +LK + + YG
Sbjct: 40 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYGPTGT 99
Query: 96 L--VYKYAGDRGVVNYYFPMRLFHYLNASTIDGGICDRAG-------QEALKDIYGTAVG 146
Y + + N MR A + GG + G Q + + GT
Sbjct: 100 FGGSYGWRSPGRLHNCQVLMR-----RALNLAGGFVNSVGDYSTAGAQIIMPYVMGTLEV 154
Query: 147 VD-----PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDVVR 190
+ P ++ L+V+W + TN G++ K + ++ VR
Sbjct: 155 YEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVR 214
Query: 191 TETAKR-SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLS- 248
TETA RP TDV LG+A + E+L+D+DF+ GF+ F Y+ S
Sbjct: 215 TETADYFGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESD 274
Query: 249 -----LNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALV 303
+ ++ G+ E+IRE AR F + ++ G+ QR +A + L +++
Sbjct: 275 GTPKTAEWAAEICGLPAEQIRELARSFVAGRTMLAAGWSIQRMHMAQQAHWMLVTLASMI 334
Query: 304 GH------RFGFIYDM--------------------KTIDKSYA--EAKFLRTKPELRIP 335
G FG Y K +++ A + P R+
Sbjct: 335 GQIGLPGGGFGLSYHYSNGGSPTSDGPALGGISDGAKAVEEGAACLSESGATSIPCARVV 394
Query: 336 QMELTEAIE---DGR------VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFL 386
M L E +G VK Y NP A + ++NR+ KA K + F+V D
Sbjct: 395 DMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIV-QDFQW 453
Query: 387 TDTALFSDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKAL 442
T TA +D+VLPA T +ER DI V Y +R +L + V +S+ ++ +A+ L
Sbjct: 454 TATARHADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERL 513
Query: 443 GIKNPYLYESDE--------EVIRKVLEANRI---SFEELKKKGFVKIPEGE-------- 483
G + DE E K E + SFE+ +G V+ P E
Sbjct: 514 GKGAEFTEGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYA 573
Query: 484 --------RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPLRLLSP 525
TPSG IE YS+ K G P + + KYPL +++
Sbjct: 574 DFREDPLFNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGAGAKYPLHVVAS 633
Query: 526 TYRMTVTSQYHNT-----HGIIDSN-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKL 579
+ + SQ T + ++ +NP DAA RGI DGD + VFN+ G+I K+
Sbjct: 634 HPKSRLHSQLTGTSLRDLYAVVGHEPCLINPADAAARGIADGDVLRVFNDRGQILVGTKV 693
Query: 580 TEDVPPGVVLLYKAFW 595
++ V PG + +Y+ W
Sbjct: 694 SDAVIPGAIQIYEGGW 709
>pdb|4DMR| Reduced Dmso Reductase From Rhodobacter Capsulatus With Bound Dmso
Substrate
Length = 823
Score = 157 bits (392), Expect = 5e-37
Identities = 178/731 (24%), Positives = 293/731 (39%), Gaps = 156/731 (21%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F SWD+A+ LVA ++K + + YG V
Sbjct: 92 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPSGV 151
Query: 96 LVYKYAGDRGVVNYYFPMRLFHYLNAS----TIDGGICDRAG-------QEALKDIYGTA 144
+ G G + P RL + T+ GG + AG Q + + GT
Sbjct: 152 ----FGGSYG---WKSPGRLHNCTTLLRRMLTLAGGYVNGAGDYSTGAAQVIMPHVVGTL 204
Query: 145 VGVD-----PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDV 188
+ P + +++V+W + T+ G++ K ++ +D
Sbjct: 205 EVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDP 264
Query: 189 VRTETAKR-SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYV--- 244
VRT+T + + +P TDV LG+A ++ E+LYD+DF+ GF++F Y+
Sbjct: 265 VRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGE 324
Query: 245 ---IKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPA 301
+ + +GV E I+E AR F K+ ++ G+ QR G +A + L +
Sbjct: 325 TDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQRMHHGEQAHWMLVTLAS 384
Query: 302 LVGH------RFGFIYD-------------MKTIDKSYAEAK---FLRTKPELRIPQMEL 339
++G FG Y + I A K +L IP +
Sbjct: 385 MLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGITDGGAATKGPEWLAASGASVIPVARV 444
Query: 340 TEAIED--------------GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIF 385
+ +E+ VK Y NP + ++NR+ KA K + FVV HD
Sbjct: 445 VDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVV-HDFQ 503
Query: 386 LTDTALFSDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKA 441
T TA +D+VLPA T +ER DI + Y + +L + + + +S+ ++ +A+
Sbjct: 504 WTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKIVEPLYEARSDYDIFAAVAER 563
Query: 442 LGIKNPYLYESDEEV------------IRKVLEANRISFEELKKKGFVKIPEGE------ 483
LG K E +E+ K +F+ +G V+ P +
Sbjct: 564 LG-KGAEFTEGKDEMGWIKSFYDDAAKQGKAAGVQMPAFDAFWAEGIVEFPVTDGADFVR 622
Query: 484 ----------RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPLRLL 523
TP+G IE YS+ K G P + + KYPL +
Sbjct: 623 YASFREDPLLNPLGTPTGLIEIYSKNIEKMGYDDCPAHPTWMEPLERLDGPGAKYPLHIA 682
Query: 524 S--PTYRM------TVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKT 575
+ P R+ TV + + G M+P DAA RGI DGD V V N+ G+I T
Sbjct: 683 ASHPFNRLHSQLNGTVLREGYAVQG--HEPCLMHPDDAAARGIADGDVVRVHNDRGQILT 740
Query: 576 KIKLTEDVPPGVVLLYKAFWVKLLG----------WNVNFLTTDKKVEKYGKGSAFHSTW 625
+K+T+ V GV+ +Y+ W +VN L+ D K +G+ +
Sbjct: 741 GVKVTDAVMKGVIQIYEGGWYDPSDVTEPGTLDKYGDVNVLSADIGTSKLAQGNCGQTVL 800
Query: 626 VEVIRCGEPGV 636
EV + P V
Sbjct: 801 AEVEKYTGPAV 811
>sp|P06131|FDHA_METFO FORMATE DEHYDROGENASE ALPHA CHAIN >gi|80907|pir||A24698 formate
dehydrogenase (EC 1.2.1.2) chain A - Methanobacterium
formicicum >gi|149708|gb|AAA72182.1| (J02581) formate
dehydrogenase A (fdhA) [Methanobacterium formicicum]
Length = 684
Score = 156 bits (391), Expect = 6e-37
Identities = 174/619 (28%), Positives = 268/619 (43%), Gaps = 76/619 (12%)
Query: 32 HPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLVAEKLKEMI-KEY 90
HP+ G LCPKG H +DRL PLIKE EF E +WD+A L+A KL E
Sbjct: 37 HPVNEGKLCPKGNFCYEIIHREDRLTTPLIKENGEFREATWDEAYDLIASKLGAYDPNEI 96
Query: 91 G--------SESVLV-YKYAGDRGVVNYYFPMRLFHYLNASTIDGGICDRAGQEALKDIY 141
G +E++ V K+A R VV + + T+ G+ G A+ + Y
Sbjct: 97 GFFCCARSPNENIYVNQKFA--RIVVGTHNIDHCARLCHGPTV-AGLAASFGSGAMTNSY 153
Query: 142 GTAVGVDPEKLKEHKLIVYWGINAFWTN-LHG--FMFAKRNNLEIWTVDVVRTETAKRSD 198
+ D LI G N+ + L G M AK N D T TAK++D
Sbjct: 154 ASFEDAD--------LIFSIGANSLEAHPLVGRKLMRAKMNGAYFIVADPRYTPTAKQAD 205
Query: 199 KFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGV 258
++ + TDV + V+I E L D++F+ + +EE K V K + + T V
Sbjct: 206 QYIPFKTGTDVALMNAMMNVIISEGLEDKEFIEKRTKNYEELKEVVSKYTPEMAEEITQV 265
Query: 259 EVEEIREFAREFAEK-KGIIHIGYGFQRSLAGGEAVRAIAILPALVGH--RFGF------ 309
+ IR+ A ++A+ K I G G + V A L L G+ R G
Sbjct: 266 PADVIRDIAIKYAKADKAAIVYSLGITEHSHGVDNVMQTANLAMLTGNIGRLGTGVNPLR 325
Query: 310 -------IYDM-----------KTIDKSYAE-------AKFLRTKPELRIPQMELTEAIE 344
DM K D+ E L +P L+IP+M +A
Sbjct: 326 GQNNVQGACDMGALPTDYPGYRKVADQEVMEDVTCTWGCSDLGCEPGLKIPEM--IDAAA 383
Query: 345 DGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFE 404
G +K LYI +P+ S P+ + + +AL D FVV DIF+TDTA F+DVVLPA + E
Sbjct: 384 KGDLKVLYITGEDPVISDPDTHHVEEALNNLDFFVV-QDIFMTDTAEFADVVLPAACWAE 442
Query: 405 RLDIVDSYYHRYVLLNEPV-AKGPGKSNSEVTRLIAKALGI-KNPYLYESDEEVIRKVLE 462
+ + R L+ + V A G K + E+ +AK +G + YES +++ +V
Sbjct: 443 QEGTFTNGERRVQLIRKAVDAPGESKYDWEIFCDLAKKMGADPEMFTYESAQDIFEEVRT 502
Query: 463 AN----RISFEELKKKGFVKIP-EGERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK-- 515
++ E L + + P E T IE ++ P E +
Sbjct: 503 VTPQYAGMNRERLDRPEALHWPCPSEDHPGTAMMHIEKFAHPDGLGIFMPLEEQGPMETP 562
Query: 516 -GKYPLRLLSPT----YRMTVTSQYHNTHGIIDSN-LYMNPKDAAERGIKDGDEVIVFNE 569
+YPL L + Y +T + + + + +N +DAAE GI + ++V V +
Sbjct: 563 DDEYPLILTTTRLLFHYHAAMTRRAATLDREVPTGYVEINTEDAAELGIANKEKVKVKSR 622
Query: 570 NGKIKTKIKLTEDVPPGVV 588
G+I+ ++T+D+ G+V
Sbjct: 623 RGEIEIAARVTDDIVKGIV 641
>gb|AAC13660.1| (U25037) dimethyl sulfoxide reductase [Rhodobacter sphaeroides f.
sp. denitrificans]
Length = 764
Score = 155 bits (388), Expect = 1e-36
Identities = 168/671 (25%), Positives = 268/671 (39%), Gaps = 127/671 (18%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F +WD+A+ LVA +LK + + YG
Sbjct: 40 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWDEALDLVARELKRVQESYGPTGT 99
Query: 96 L--VYKYAGDRGVVNYYFPMRLFHYLNASTIDG-GICDRAGQEALKDIYGTAVGVD---- 148
Y + + N MR L ++ G AG + + + V
Sbjct: 100 FGGSYGWXSPGRLHNCQVLMRRALNLAGGFVNSVGXYSTAGAQIIMPYVMGXLEVYEQQT 159
Query: 149 --PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDVVRTETAK 195
P ++ L+V+W + TN G++ K + ++ VRTETA
Sbjct: 160 AWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVRTETAD 219
Query: 196 R-SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLS------ 248
RP TDV LG+A + E+L+D+DF+ GF+ F Y+ S
Sbjct: 220 YFGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKT 279
Query: 249 LNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH--- 305
+ ++ G+ E+IRE AR F + ++ G+ QR +A + L +++G
Sbjct: 280 AEWAAEICGLPAEQIRELARSFVAGRTMLAAGWSIQRMHMAQQAHWMLVTLASMIGQIGL 339
Query: 306 ---RFGFIYDMKTIDKSYAEAKFL----------------------RTKPELRIPQMELT 340
FG Y ++ L + P R+ M L
Sbjct: 340 PGGGFGLSYHYSNGGSPTSDGPALGGISDGAKAVEXGAACLSESGATSIPCARVVDMLLN 399
Query: 341 EAIE---DGR------VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTAL 391
E +G VK Y NP A + ++NR+ KA K + F+V D T TA
Sbjct: 400 PGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIV-QDFQWTATAR 458
Query: 392 FSDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKALGIKNP 447
+D+VLPA T +ER DI V Y +R +L + V +S+ ++ +A+ LG
Sbjct: 459 HADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKGAE 518
Query: 448 YLYESDE--------EVIRKVLEANRI---SFEELKKKGFVKIPEGE------------- 483
+ DE E K E + SFE+ +G V+ P E
Sbjct: 519 FTEGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFRED 578
Query: 484 ---RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPLRLLSPTYRMT 530
TPSG IE YS+ K G P + + KYPL +++ +
Sbjct: 579 PLFNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGAGAKYPLHVVASHPKSR 638
Query: 531 VTSQYHNT-----HGIIDSN-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVP 584
+ SQ T + ++ +NP DAA RGI DGD + VFN+ G+I K+++ V
Sbjct: 639 LHSQLTGTSLRDLYAVVGHEPCLINPADAAARGIADGDVLRVFNDRGQILVGTKVSDAVI 698
Query: 585 PGVVLLYKAFW 595
PG + +Y+ W
Sbjct: 699 PGAIQIYEGGW 709
>sp|P44798|BISC_HAEIN PROBABLE BIOTIN SULFOXIDE REDUCTASE (BDS REDUCTASE) (BSO REDUCTASE)
>gi|1073907|pir||H64083 biotin sulfoxide reductase (EC
1.-.-.-) - Haemophilus influenzae (strain Rd KW20)
>gi|1573641|gb|AAC22303.1| (U32747) biotin sulfoxide
reductase (bisC) [Haemophilus influenzae Rd]
Length = 825
Score = 155 bits (387), Expect = 2e-36
Identities = 174/748 (23%), Positives = 306/748 (40%), Gaps = 143/748 (19%)
Query: 20 RNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEG--------------- 64
++GK++ G P L ++ +S+ R+K P++++G
Sbjct: 62 QDGKVVKSGPAIEPAVPNEL---QTVVADQLYSERRVKCPMVRKGFLANPGKSDTTMRGR 118
Query: 65 DEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNAST- 123
DE+ SWD+A+ LV +LK + E+GS + Y + L Y+NA+
Sbjct: 119 DEWVRVSWDEALDLVHNQLKRVRDEHGSTGIFAGSYGWFSCGSLHASRTLLQRYMNATGG 178
Query: 124 ---IDGGICDRAGQEALKDIYGTAVGVDPEK-----LKEHKLIVYWGINAFWTNLHGFMF 175
G A Q + + GT + + L+ +IV W N T +M
Sbjct: 179 FVGHKGDYSTGAAQVIMPHVLGTIEVYEQQTSWESILESSDIIVLWSANPLTTMRIAWMS 238
Query: 176 AKRNNLE-----------IWTVDVVRTETAKRSD-KFFQVRPDTDVLFALGVAKVMIEEN 223
+ +E I +D ++ET + + ++ V TDV LG+A ++E+
Sbjct: 239 TDQKGIEYFKKFQASGKRIICIDPQKSETCQMLNAEWIPVNTATDVPLMLGIAHTLVEQG 298
Query: 224 LYDEDFVRENVYGFEEFKNYVI------KLSLNYVSQETGVEVEEIREFAREFAEKKGII 277
+D+DF+++ G+ +F+ Y++ + + ++ GV E I++ A +FA K+ ++
Sbjct: 299 KHDKDFLKKYTSGYAKFEEYLLGKTDGQPKTAEWAAKICGVPAETIKQLAADFASKRTML 358
Query: 278 HIGYGFQRSLAGGEAVRAIAILPALVGH------RFGFIYDM------------------ 313
G+G QR G + + L +++G FG Y
Sbjct: 359 MGGWGMQRQRHGEQTHWMLVTLASMLGQIGLPGGGFGLSYHYSNGGVPTATGGIIGSITA 418
Query: 314 ----KTIDKSYAEAKFLRTKPELRIPQMELTEA---------IEDGRVKFLYIYNSNPLA 360
K K++ + P RI + L I +K +Y NP
Sbjct: 419 SPSGKAGAKTWLDDTSKSAFPLARIADVLLHPGKKIQYNGTEITYPDIKAVYWAGGNPFV 478
Query: 361 SYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIVD----SYYHRY 416
+ + N L KA +K D+ V+ +++ T TA +D+VLPA T +ER D+ S Y
Sbjct: 479 HHQDTNTLVKAFQKPDV-VIVNEVNWTPTARMADIVLPATTSYERNDLTMAGDYSMMSVY 537
Query: 417 VLLNEPVAKGPGKSNSEVTRLIAKALGIKNPYLYESDE--------EVIRKVLEANRISF 468
+ + K++ ++ +AK G++ Y E ANR++
Sbjct: 538 PMKQVVPPQFEAKNDYDIFVELAKRAGVEEQYTEGKTEMEWLEEFYNAAFSAARANRVAM 597
Query: 469 EELKKKGFVKIP------EGERKW---------------NTPSGKIEFYSQRAVK----- 502
K P E +KW TPSGKIE +S K
Sbjct: 598 PRFDKFWAENKPLSFEAGEAAKKWVRYGEFREDPLLNPLGTPSGKIEIFSDVVEKMNYND 657
Query: 503 -RGLSPFPEYKKFKG----KYPLRLLSPTYRMTVTSQYHNT-----HGIIDSNLYM-NPK 551
+G + E ++F G +YPL L++P + SQ +T + + D M +P+
Sbjct: 658 CKGHPSWMEPEEFAGNVTEEYPLALVTPHPYYRLHSQLAHTSLRQKYAVNDREPVMIHPE 717
Query: 552 DAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWV--KLLGWN------- 602
DAA RGIKDGD V + ++ G++ +TE++ G V L++ W LG +
Sbjct: 718 DAAARGIKDGDIVRIHSKRGQVLAGAAVTENIIKGTVALHEGAWYDPMYLGESEKPLCKN 777
Query: 603 --VNFLTTDKKVEKYGKGSAFHSTWVEV 628
N LT D+ K +G++ ++ V++
Sbjct: 778 GCANVLTRDEGTSKLAQGNSPNTCIVQI 805
>prf||2117158A DMSO reductase [Rhodobacter sphaeroides]
Length = 777
Score = 152 bits (381), Expect = 9e-36
Identities = 171/679 (25%), Positives = 269/679 (39%), Gaps = 143/679 (21%)
Query: 51 HSKDRLKLPLIKE---------------GDEFNETSWDKAISLVAEKLKEMIKEYGSESV 95
+S R+K P+++ +F +W +A+ LVA +LK + + YG
Sbjct: 50 YSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVRVTWKEALDLVARELKRVQESYGPTGT 109
Query: 96 L--VYKYAGDRGVVNYYFPMRLFHYLNASTIDGGICDRAG-------QEALKDIYGTAVG 146
Y + + N MR A + GG + G Q + + GT
Sbjct: 110 FGGSYGWRSPGRLHNCQVLMR-----RALNLAGGFVNSVGDYSTAGAQIIMPYVMGTLEV 164
Query: 147 VD-----PEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDVVR 190
+ P ++ L+V+W + TN G++ K + ++ VR
Sbjct: 165 YEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVR 224
Query: 191 TETAKR-SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLS- 248
TETA RP TDV LG+A + E+L+D+DF+ GF+ F Y+ S
Sbjct: 225 TETADYFGADVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESD 284
Query: 249 -----LNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALV 303
+ ++ G+ E+IRE AR F + ++ G+ QR +A + L +++
Sbjct: 285 GTPKTAEWAAEICGLPAEQIRELARSFVAGRTMLAAGWSIQRMHMAQQAHWMLVTLASMI 344
Query: 304 GH------RFGFIYDMKTIDKSYAEAKFL----------------------RTKPELRIP 335
G FG Y ++ L + P R+
Sbjct: 345 GQIGLPGGGFGLSYHYSNGGSPTSDGPALGGISDGAKARVEGAACLSESGATSIPCARVV 404
Query: 336 QMELTEAIE---DGR------VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFL 386
M L E +G VK Y NP A + ++NR+ KA K + F+V D
Sbjct: 405 DMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIV-QDFQW 463
Query: 387 TDTALFSDVVLPANTFFERLDI--VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKAL 442
T TA +D+VLPA T +ER DI V Y +R +L + V +S+ ++ +A+ L
Sbjct: 464 TATARHADIVLPATTSYERNDIESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERL 523
Query: 443 GIKNPYLYESDE--------EVIRKVLEANRI---SFEELKKKGFVKIPEGE-------- 483
G + DE E K E + SFE+ +G V+ P E
Sbjct: 524 GKGAEFTEGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYA 583
Query: 484 --------RKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFK----------GKYPLRLLSP 525
TPSG IE YS+ K G P + + KYPL +++
Sbjct: 584 DFREDPLFNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEPAERLGGAGAKYPLHVVAS 643
Query: 526 TYRMTVTSQYHNTHGIIDSNLY---------MNPKDAAERGIKDGDEVIVFNENGKIKTK 576
+ + SQ T +LY +NP DAA RGI DGD + VFN+ G+I
Sbjct: 644 HPKSRLHSQLTGTSL---RDLYAVAGHEPCLINPADAAARGIADGDVLRVFNDRGQILVG 700
Query: 577 IKLTEDVPPGVVLLYKAFW 595
K+++ V PG + +Y+ W
Sbjct: 701 TKVSDAVIPGAIQIYEGGW 719
>pir||B70320 nitrate reductase (EC 1.7.99.4) chain A narB - Aquifex aeolicus
>gi|2982925|gb|AAC06542.1| (AE000678) nitrate reductase
narB [Aquifex aeolicus]
Length = 666
Score = 151 bits (378), Expect = 2e-35
Identities = 174/668 (26%), Positives = 293/668 (43%), Gaps = 85/668 (12%)
Query: 21 NGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDE--FNETSWDKAISL 78
N K VKG+ EHP G +C K LP+ + + R+ P+ +E F E SW++A +
Sbjct: 18 NEKGKVKGDFEHPANLGDICKKPLYLPKVLN-RGRIAKPMYRENKSHSFREISWEEAYEI 76
Query: 79 VAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLNASTIDGG--ICDRAGQE 135
+ EKL S + +G + Y + +L + +D +C +
Sbjct: 77 LKEKLISF-----SPDETYFYLSGQLLTEDIYVANKFVKGFLRTNNVDANSRLCMASAVT 131
Query: 136 ALKDIYGT-AVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFA---KRNNLE----IWTVD 187
A K +G+ V E + + ++ G NA H +F KR E I TVD
Sbjct: 132 AYKLAFGSDGVPCTYEDVDDADAFLFIGSNA--AVAHPVLFKRVLKRRKEEEKVIIVTVD 189
Query: 188 VVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKL 247
+ TETAKRSD F Q++ TD +F V V+ +E D F+ GFEE +K
Sbjct: 190 PLETETAKRSDVFIQIKAGTDTVFLNSVLYVLHKEGWIDYRFIYNYTEGFEEALEVAMKF 249
Query: 248 SLNYVSQETGVEVEEIREFAREFAEKKGIIHIG-YGFQRSLAGGEAVRAIAILP------ 300
+ + V+ E++ A FA K +I G +SL G A+ L
Sbjct: 250 PPDVAASICSVKPEDVYLVAELFAHSKKLISFWCQGLNQSLNGTMKNLALINLHLATGRL 309
Query: 301 --------------ALVGHRFGFIYD--------MKTIDKSYAEAKFLRTKPELRIPQME 338
A+ G G++ + D+++ E KF K + P
Sbjct: 310 NEKGCPFSLTGQPNAMGGREVGYLTNGLPGYRDVRNKADRAFME-KFWGVKGIKKEPGPT 368
Query: 339 LTEAIE---DGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDV 395
+TEAI+ R+KFL++ +NP S PN ++++AL K +F+V D + DT F+++
Sbjct: 369 ITEAIDMILKDRIKFLWVVCTNPAVSLPNLEKVKRALEK--VFLVVQDAYWNDTCEFANL 426
Query: 396 VLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNSE--VTRLIAKALGIKNPYLYESD 453
+LPA E+ ++ R V E ++ G+S + + +A+ +G + + Y S
Sbjct: 427 ILPAAQLGEKEGVMTG-SDRTVTFCERFSEPFGESKPDWLIFTELARKMGAEELFPYSSP 485
Query: 454 EEVIR--------KVLEANRISFEELKKKGFVKIPEGERKWNTPSGKIEFYSQRAVKRGL 505
+E+ ++ + + +S+E L + + + K+ T SGK F+ R
Sbjct: 486 KEIFEEFKASTKGRLCDMSNLSYENLPARWGKRWLYEDLKFPTESGKARFHPARV----- 540
Query: 506 SPFPEYKKFKGKYPL---RLLSPTYRMTVTSQYHN-THGIIDSNLYMNPKDAAERGIKDG 561
+ +G + L RL + + MT T + G I + MNP+DA E GI++G
Sbjct: 541 ----DVAAEEGMFILLTGRLKNNWHTMTRTGKSPELLKGEIPPFVIMNPRDAEELGIEEG 596
Query: 562 DEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAF-WVKLLGWNVNFLTTDKKVEKYGKGSA 620
+EVI+ + GK T++ +V G + + F + G N LT+D + + Y K
Sbjct: 597 EEVIL-SAKGKEITRVVRFGNVKRGHI--FAPFGYPSEYGEPTNLLTSD-RTDPYSKEPD 652
Query: 621 FHSTWVEV 628
+ V+V
Sbjct: 653 LKYSGVDV 660
>pir||G64570 biotin sulfoxide reductase (EC 1.8.4.-) - Helicobacter pylori
(strain 26695) >gi|2313512|gb|AAD07475.1| (AE000556)
biotin sulfoxide reductase (bisC) [Helicobacter pylori
26695]
Length = 796
Score = 148 bits (369), Expect = 2e-34
Identities = 168/663 (25%), Positives = 279/663 (41%), Gaps = 126/663 (19%)
Query: 51 HSKDRLKLPLIKEG--------------DEFNETSWDKAISLVAEKLKEMIKE--YGSES 94
+S R+K P +++ +EF SWD A+ L A+KLKE+ KE Y +
Sbjct: 76 YSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAKKLKEIPKENIYNAS- 134
Query: 95 VLVYKYAGDRGVVN--YYFPMRLFHYLNASTI--DGGICDRAGQEALKDIYG-----TAV 145
Y G G ++ ++ R F+ I DG + A I G +
Sbjct: 135 ---YGGWGHAGSLHRCHHLAWRFFNTTLGGAIGTDGEYSNGAAARINPMIVGDMEVYSQQ 191
Query: 146 GVDPEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDVVRTETA 194
E +K K+ V WG + N + KR ++ ++D + TETA
Sbjct: 192 TTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKFISIDPIYTETA 251
Query: 195 KR-SDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLS----- 248
+ S ++ +RP+TDV LG+ + N YD+ F+ + GF++F Y++ S
Sbjct: 252 QAFSAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESDNAPK 311
Query: 249 -LNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH-- 305
L + SQ TGV E+I+E A F K+ + + QR+ G + A+ +L +++G
Sbjct: 312 TLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWALIVLASMIGQVG 371
Query: 306 ----RFGFIYDMKTIDKSYAEAKFL------RTKPELRIPQMELTEAIED---------- 345
FGF ++ + A+ + + IP ++EAI +
Sbjct: 372 LSGGGFGFSMHYGGNAQASSGARIVPMISQGHNSVKSVIPASRVSEAILNPDKEIDFMGK 431
Query: 346 ----GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANT 401
++K +Y ++ L + N L +ALR D V+ H+ + T TA F+D+V + +
Sbjct: 432 KLKLPKIKMIYNCGADLLGHETDTNELIRALRTLDC-VIVHEPWWTPTAKFADIVFASTS 490
Query: 402 FFERLDIV--DSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKALG--------IKNPYL 449
ER DI SY V V + K + E+ R +A +G ++
Sbjct: 491 TVERDDIAFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQLALRIGGNETEQKFTESKSY 550
Query: 450 YESDEEVIRKVLEANRISFEELKKKGFV--KIPEGERKW---------------NTPSGK 492
E + + K SF++ + GFV +IPE RK+ +T SGK
Sbjct: 551 MEWIKGLYEKSDGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPINNKLDTESGK 610
Query: 493 IEFYSQRAVKRGLSPFPEY-----------KKFKGKYPLRLLSPTYRMTVTSQYHNTHGI 541
I+ +SQ+ L+ F + K YP L+SP + V SQ NT
Sbjct: 611 IQIFSQKCADFKLADFKGHPTWFEPAEWLGSKMAEIYPFHLISPHPKYRVNSQLDNTW-- 668
Query: 542 IDSNLY---------MNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYK 592
N+Y +N DA + GI+ G+ V VFN G++ +T+++ GV+ + K
Sbjct: 669 -VRNVYKIQGREPVMINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQGVLSIQK 727
Query: 593 AFW 595
W
Sbjct: 728 GAW 730
>emb|CAC11193.1| (AL445063) probable formate dehydrogenase, alpha subunit
[Thermoplasma acidophilum]
Length = 702
Score = 143 bits (357), Expect = 6e-33
Identities = 151/640 (23%), Positives = 263/640 (40%), Gaps = 72/640 (11%)
Query: 9 CYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFN 68
C C I ++ V G + G LC KG + S DR+ P+++ GD +
Sbjct: 42 CGTGCQIEVDYSGDHYTVHGYTRSAVNEGKLCIKGYQGLSYASSHDRITSPMLRSGDTWV 101
Query: 69 ETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID--G 126
+ SWD+AI V ++LKE+ YG +++ A NY ++ + + +D
Sbjct: 102 KVSWDEAIDYVVKRLKEIRDRYGPDAIAFQASAKCTNEENYLL-QKIARMIGTNNVDHCA 160
Query: 127 GICDRAGQEALKDIYGTAVGVDPEK-LKEHKLIVYWGINAFWTNLHGFMFA-----KRNN 180
C + L GTA K LK + G N T H + K+
Sbjct: 161 RSCHSSTVAGLIRTLGTAAATGSIKSLKSTQTFFVIGSNT--TEQHPIIGTTIIKQKKAG 218
Query: 181 LEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEF 240
++ D RT+ A +D F Q +P +DV + V+++ L D +F++ GFE F
Sbjct: 219 KKLIVADPRRTKLASIADVFLQFKPGSDVALLNSMMFVILKRGLIDSEFIKSRTEGFEAF 278
Query: 241 KNYVIKLSLNYVSQETGVEVEEIREFAREFAEKK-GIIHIGYGFQRSLAGGEAVRAIAIL 299
+ K Q TGV + + + A +A + I G G + + G E V +++ L
Sbjct: 279 AEEIEKYPPELTEQITGVPPDLVEKAAEIYASNRPSAILYGMGITQHIHGTENVMSVSNL 338
Query: 300 PALVGH--RFGF-------------IYDMKTIDKSY---------AEAKFLRTKPELRIP 335
+ G+ R+G DM + + Y KF R E ++P
Sbjct: 339 ALMTGNLGRYGSGIFPLRGQNNVQGSSDMGALSEFYPGYVPPDSPGVEKFERIW-EAKLP 397
Query: 336 QM------ELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDT 389
+ E+ +A DGRVK +Y+ NP+ + N + + + L+ ++FVV DIF+TDT
Sbjct: 398 RKVGLMLSEMFDAAIDGRVKAIYLMGENPVITEANLSDVERGLKNLELFVV-QDIFMTDT 456
Query: 390 ALFSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNSEVTRLIAKALGIKNPYL 449
A ++ V+LPA + E+ + + R + PV PG + + L I +
Sbjct: 457 ARYAHVILPATSALEK-EGTFTNTERRIQRVVPVKDPPGDARPDWWILSQIYSKIFDREA 515
Query: 450 YESDEEVIRKVLEANRISFEELKKKGFVKIPEGERKW----NTPSGKIEFYSQRAVKRGL 505
Y S E++ ++ R++ + + ++W P G E RGL
Sbjct: 516 YRSPEDIFNEI----RLAIPNYSGVRYSDLYPDGKQWPINDQHPEG-AEILHVDKFARGL 570
Query: 506 SPFPEYKKFKGKYPLRLLSPTYRMTVTS--QYHNTHG--------IIDSN-----LYMNP 550
F K P Y +T+ Y++ H I++ + ++
Sbjct: 571 GRF---MAIPYKSPSESPDEEYPFILTTGRNYYHWHSGTMTRRSEILERESPNPYVEISV 627
Query: 551 KDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLL 590
DA + I++G + + + +G IK +T +P G+V +
Sbjct: 628 NDAKKLSIRNGQTITIESRHGSIKLPAMVTSKIPDGIVFV 667
>sp|P31075|PSRA_WOLSU POLYSULFIDE REDUCTASE CHAIN A PRECURSOR (SULFUR REDUCTASE CHAIN A)
>gi|79393|pir||S23457 polysulfide reductase (EC 1.-.-.-)
chain psrA precursor - Wolinella succinogenes
>gi|48526|emb|CAA46176.1| (X65042) gtg start codon
[Wolinella succinogenes]
Length = 763
Score = 143 bits (357), Expect = 6e-33
Identities = 161/682 (23%), Positives = 303/682 (43%), Gaps = 111/682 (16%)
Query: 9 CYDTCSIISEFRNGK-LIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGD-- 65
C +C+I + K + ++GNP+ G +C +G + RL P+++ G+
Sbjct: 54 CTSSCTIEARVEGDKGVFIRGNPKDKSRGGKVCARGGSGFNQLYDPQRLVKPIMRVGERG 113
Query: 66 --EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYL---- 119
++ E SWD+A + +A+KL E+ +++G+ +V +G + FH+L
Sbjct: 114 EGKWKEVSWDEAYTFIAKKLDEIKQKHGAHTVAFTARSG--------WNKTWFHHLAQAY 165
Query: 120 NASTIDG--GICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFW----TNLHGF 173
+ I G C A A +D++G ++ D K K I+ G N F + + +
Sbjct: 166 GSPNIFGHESTCPLAYNMAGRDVFGGSMNRDFAKAK---YIINMGHNVFEGIVISYVRQY 222
Query: 174 MFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVREN 233
M A N ++ T++ + A+++ ++ ++P D+ F LG +I ENLYD+ FV++
Sbjct: 223 MEAIENGAKVVTLEPRLSVMAQKASEWHAIKPGHDLPFVLGFMHTLIFENLYDKKFVQKY 282
Query: 234 VYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAE--KKGIIHIGYGFQRSLAGGE 291
GFEE K + + ++ E + + I+ AREFA+ K I G+ + E
Sbjct: 283 CTGFEELKASIEPCTPEKMALECDIPADTIKRLAREFAKAAPKAIFDFGHRVTFTPQELE 342
Query: 292 AVRAIAILPALVGH--RFGFIYDMKT-------IDKSYAEAKFLRTKPELRIPQMELTEA 342
RA+ ++ ALVG+ R G +Y K + + +AK L+ P++E+
Sbjct: 343 LRRAMMMVNALVGNIERDGGMYFGKNASFYNQFLGEEDPKAKGLKKPKTPAYPKVEVPRI 402
Query: 343 IEDG--------------------------------RVKFLYIYNSNPLASYPNQNRLRK 370
G ++ +I +NP+ + N + + K
Sbjct: 403 DRIGEKDGEFFLANKGEGIVSLVPKATLNELPGVPCKIHGWFIVRNNPVMTQTNADTVIK 462
Query: 371 ALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIV-------DSYYHRYVLLNEPV 423
AL+ D+ VV DI ++DTA F+DVVLP T+ ER + S+ + EP+
Sbjct: 463 ALKSMDL-VVCVDIQVSDTAWFADVVLPDTTYLERDEEFTAGGGKNPSFGIGRQKVVEPL 521
Query: 424 AKGPGKSNSEVTRLIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKG-------- 475
G K ++ + +++ +G+ + ++ E+ + ++ + +LKK G
Sbjct: 522 --GDAKPGWKIAKELSEKMGLGEYFPWKDIEDYRLQQVDGDLDLLAKLKKDGSASFGVPL 579
Query: 476 ----------FV-KIPEGERKWNTPS-----GKIEFYSQRAVK------RGLSPFPEYKK 513
FV K P K N KI+ +S + + G PF +YK+
Sbjct: 580 MLQEKKSVAEFVKKFPGAASKVNEEGLIDFPKKIQLFSPKLEEVSGKGGLGYEPF-KYKE 638
Query: 514 FKGKYPLRLLSPTYRMTVTSQYHNTHGIIDSN-LYMNPKDAAERGIKDGDEVIVFNENGK 572
Y ++ +P + T + +++ + ++++PK A++ GIK+GD + ++N+
Sbjct: 639 EDELYFVQGKTPVRSNSHTGNVPWLNNLMEYDAIWIHPKTASKLGIKNGDAIELYNKFSS 698
Query: 573 IKTKIKLTEDVPPGVVLLYKAF 594
K+K +TE V + Y F
Sbjct: 699 QKSKALITEGVREDTLFGYFGF 720
>emb|CAA06794.1| (AJ005974) trimethylamine-N-oxide reductase [Shewanella
putrefaciens]
Length = 829
Score = 143 bits (356), Expect = 8e-33
Identities = 170/661 (25%), Positives = 273/661 (40%), Gaps = 127/661 (19%)
Query: 62 KEGD-EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGV-VNYYFPMRLFHYL 119
+ GD F +WDKA+ L L E+ +YG + +AG G H
Sbjct: 108 QRGDFRFVRVTWDKALKLFKHSLDEVQTKYGPSGL----HAGQTGWRATGQLHSSTSHMQ 163
Query: 120 NASTIDGGICDR-------AGQEALKDIYGT----AVGVD-PEKLKEHKLIVYWGINAF- 166
A + G + AGQ L + G+ A G P L+ IV W N +
Sbjct: 164 RAVGMHGNFVKKIGDYSTGAGQTILPYVLGSTEVYAQGTSWPLILENSNTIVLWSNNPYK 223
Query: 167 -----WTNLHGFMFA---------KRNNLEIWTVDVVRTET-AKRSDKFFQVRPDTDVLF 211
W FA K+ + + ++D V T+T A + V P TDV
Sbjct: 224 NLQVGWNAETHEAFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLYVNPQTDVTL 283
Query: 212 ALGVAKVMIEENLYDEDFVRENVYGFEEFKNYV------IKLSLNYVSQETGVEVEEIRE 265
L +A MI + L+DE F++ GFEEF YV I + + + GVE IR+
Sbjct: 284 MLAIAHEMITQKLHDEKFIQGYSLGFEEFVPYVMGTKDGIAKTPEWAAPICGVEPHIIRD 343
Query: 266 FAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH--------RFGFIYDMKTID 317
A+ + + I +G+ QR G + A+L ++G +G Y +
Sbjct: 344 LAKTLVKGRTQIMMGWCIQRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHYSSIGVP 403
Query: 318 KSYAEAK--FLRTKPELRIPQMELTE----------------AIEDGR------------ 347
+ A A F R E + P + T+ +E G+
Sbjct: 404 ATTAAAPGAFPRNLDENQKPLFDSTDFKGASSTIPVARWIDAILEPGKTIDANGSKVVYP 463
Query: 348 -VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFER- 405
+K + +NP + ++NR+++A +K + VV+ D+ T T FSD+VLPA T +ER
Sbjct: 464 DIKMMIFSGNNPWNHHQDRNRMKQAFQKLEC-VVSIDVNWTATCRFSDIVLPACTTYERN 522
Query: 406 -LDIVDSYYHRYVLLNEPVAKGPGKSNS--EVTRLIAKALGIKNPYL-----YESDEEVI 457
+D+ +Y +R +L + + + +S S E+ A LG + Y E E +
Sbjct: 523 DIDVYGAYANRGILAMQKMVEPLFESLSDFEIFTRFAALLGKEKEYTRNMSEMEWIETLY 582
Query: 458 RKVLEANRISFE-----ELKKKGFVKIPEGE--------------RKWNTPSGKIEFYSQ 498
+ AN +E K+G+V EGE TPSG IE +S+
Sbjct: 583 NECKAANAGKYEMPDFATFWKQGYVHFGEGELWTRHADFRNDPEINPLGTPSGLIEIFSR 642
Query: 499 RAVKRGLSPFPEYKKF------------KGKYPLRLLS--PTYR----MTVTSQYHNTHG 540
+ + G + + KYP+ L S P +R M + +Y T+
Sbjct: 643 KIEQFGYDDCQGHPMWMEKAERSHGGPGSNKYPMWLQSCHPDHRLHSQMCESKEYRETYT 702
Query: 541 IIDSN-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKLL 599
+ +Y++P+DA RGIKDGD V VFN+ G++ +++ P GVV +++ W +
Sbjct: 703 VNGREPVYISPEDAKTRGIKDGDIVRVFNDRGQLLAGAVVSDRFPKGVVRIHEGAWYGPV 762
Query: 600 G 600
G
Sbjct: 763 G 763
>gb|AAC43173.1| (U00006) formate dehydrogenase-H alpha subunit [Escherichia coli]
Length = 715
Score = 141 bits (353), Expect = 2e-32
Identities = 160/663 (24%), Positives = 280/663 (42%), Gaps = 90/663 (13%)
Query: 9 CYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKD------RLKLPLIK 62
C C I NGK++ + +G LC KG W D RLK P+I+
Sbjct: 11 CASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYY--GWDFINDTQILTPRLKTPMIR 68
Query: 63 E--GDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYA-GDRGVVNYYFPMRLFHYL 119
G + SWD+A++ VAE+L + ++YG +++ + G NY +
Sbjct: 69 RQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVI 128
Query: 120 NASTID--GGICDRAGQEALKDIYGT-AVGVDPEKLKEHKLIVYWGINAFWTN---LHGF 173
+ +D +C L G A+ ++ L+ +G N ++ +
Sbjct: 129 GTNNVDCCARVCHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVANHV 188
Query: 174 MFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVREN 233
+ AKRN +I D + ETA+ +D ++ +++ + V+IEENLYD+ FV
Sbjct: 189 INAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFVASR 248
Query: 234 VYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAE-KKGIIHIGYGFQRSLAGGEA 292
GFEE++ V + V TGV EIR+ AR +A+ K I G G + G E
Sbjct: 249 TEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGVET 308
Query: 293 VRAIAILPALVG---------------HRFGFIYDMKTIDKSYA----------EAKFLR 327
VR++ L L G + DM + +Y KF +
Sbjct: 309 VRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKFAK 368
Query: 328 TKPELRIPQ------MELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVT 381
+P EL G V+ YI +PL + + +RKA ++ V+
Sbjct: 369 AWGVESLPAHTGYXISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFEDLEL-VIV 427
Query: 382 HDIFLTDTALFSDVVLPANTFFERLDI---VDSYYHRYVLLNEPVAKGPGKSNSEVTRLI 438
DIF+T TA +DV+LP+ ++ E + D + R+ EP K K++ ++ I
Sbjct: 428 QDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEP--KWDLKTDWQIISEI 485
Query: 439 AKALGIKNPYLYESDEEVIRKVL----EANRISFEELKKKGFVKIP--------EG---- 482
A +G P Y + +E+ ++ + ++E++ + GF++ P +G
Sbjct: 486 ATRMGY--PMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTSYL 543
Query: 483 -ERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPLRLLSPTYRM------TVTSQY 535
+ K++TP+G +F++ V K +YP+ +LS + ++T
Sbjct: 544 FKEKFDTPNGLAQFFTCDWV-------APIDKLTDEYPM-VLSTVREVGHYSCRSMTGNC 595
Query: 536 HNTHGIIDSNLY--MNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKA 593
+ D Y +N +DA GI+D V V + GKI T+ ++++ G + +
Sbjct: 596 AALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQ 655
Query: 594 FWV 596
+W+
Sbjct: 656 WWI 658
>sp|P07658|FDHF_ECOLI FORMATE DEHYDROGENASE H (FORMATE-HYDROGEN-LYASE-LINKED,
SELENOCYSTEINE-CONTAINING POLYPEPTIDE) (FORMATE
DEHYDROGENASE-H ALPHA SUBUNIT) (FDH-H)
>gi|65980|pir||DEECFS formate dehydrogenase (EC 1.2.1.2)
H (hydrogenase-linked) [validated] - Escherichia coli
Length = 715
Score = 141 bits (353), Expect = 2e-32
Identities = 160/663 (24%), Positives = 280/663 (42%), Gaps = 90/663 (13%)
Query: 9 CYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKD------RLKLPLIK 62
C C I NGK++ + +G LC KG W D RLK P+I+
Sbjct: 11 CASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYY--GWDFINDTQILTPRLKTPMIR 68
Query: 63 E--GDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYA-GDRGVVNYYFPMRLFHYL 119
G + SWD+A++ VAE+L + ++YG +++ + G NY +
Sbjct: 69 RQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVI 128
Query: 120 NASTID--GGICDRAGQEALKDIYGT-AVGVDPEKLKEHKLIVYWGINAFWTN---LHGF 173
+ +D +C L G A+ ++ L+ +G N ++ +
Sbjct: 129 GTNNVDCCARVCHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVANHV 188
Query: 174 MFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVREN 233
+ AKRN +I D + ETA+ +D ++ +++ + V+IEENLYD+ FV
Sbjct: 189 INAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDKAFVASR 248
Query: 234 VYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAE-KKGIIHIGYGFQRSLAGGEA 292
GFEE++ V + V TGV EIR+ AR +A+ K I G G + G E
Sbjct: 249 TEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGVET 308
Query: 293 VRAIAILPALVG---------------HRFGFIYDMKTIDKSYA----------EAKFLR 327
VR++ L L G + DM + +Y KF +
Sbjct: 309 VRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKFAK 368
Query: 328 TKPELRIPQ------MELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVT 381
+P EL G V+ YI +PL + + +RKA ++ V+
Sbjct: 369 AWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFEDLEL-VIV 427
Query: 382 HDIFLTDTALFSDVVLPANTFFERLDI---VDSYYHRYVLLNEPVAKGPGKSNSEVTRLI 438
DIF+T TA +DV+LP+ ++ E + D + R+ EP K K++ ++ I
Sbjct: 428 QDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEP--KWDLKTDWQIISEI 485
Query: 439 AKALGIKNPYLYESDEEVIRKVL----EANRISFEELKKKGFVKIP--------EG---- 482
A +G P Y + +E+ ++ + ++E++ + GF++ P +G
Sbjct: 486 ATRMGY--PMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTSYL 543
Query: 483 -ERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPLRLLSPTYRM------TVTSQY 535
+ K++TP+G +F++ V K +YP+ +LS + ++T
Sbjct: 544 FKEKFDTPNGLAQFFTCDWV-------APIDKLTDEYPM-VLSTVREVGHYSCRSMTGNC 595
Query: 536 HNTHGIIDSNLY--MNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKA 593
+ D Y +N +DA GI+D V V + GKI T+ ++++ G + +
Sbjct: 596 AALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNKGAIYMTYQ 655
Query: 594 FWV 596
+W+
Sbjct: 656 WWI 658
>pir||H71865 probable s/n-oxide reductase - Helicobacter pylori (strain J99)
>gi|4155551|gb|AAD06546.1| (AE001526) putative S/N-oxide
reductase [Helicobacter pylori J99]
Length = 796
Score = 140 bits (350), Expect = 4e-32
Identities = 166/663 (25%), Positives = 273/663 (41%), Gaps = 126/663 (19%)
Query: 51 HSKDRLKLPLIKEG--------------DEFNETSWDKAISLVAEKLKEMIKE------Y 90
+S R+K P +++ +EF SWD A+ L A+KLKE+ KE Y
Sbjct: 76 YSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWDMALDLAAKKLKEIPKENIFNASY 135
Query: 91 GSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTI--DGGICDRAGQEALKDIYG-----T 143
G + +AG N R F+ I DG + A I G +
Sbjct: 136 GG-----WGHAGSLHRCNN-LAWRFFNTTLGGAIGTDGEYSNGAAARINPMIVGDMEVYS 189
Query: 144 AVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFA-----------KRNNLEIWTVDVVRTE 192
E +K K+ V WG + F N + KR ++ ++D + TE
Sbjct: 190 QQTTHEEMIKNCKVYVMWGADLFKCNRIDYFVPNHVNDSYYPKYKRAGIKFISIDPIYTE 249
Query: 193 TAKRSD-KFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLS--- 248
TA+ + ++ +RP+TDV LG+ + N YD+ F+ + GF+ F Y++ S
Sbjct: 250 TAQAFNAEWIPIRPNTDVALMLGMMHHLYTSNQYDKAFIAKYTDGFDRFLPYLLGESDKA 309
Query: 249 ---LNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH 305
L + SQ TGV E+I+E A F K+ + + QR+ G + A+ +L +++G
Sbjct: 310 PKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAMQRAQHGEQPDWALIVLASMIGQ 369
Query: 306 ----RFGFIYDMKTIDKSYAEAKFLRTKPELR---------IPQMELTEAIED------- 345
GF + M + A + R P + IP ++EAI +
Sbjct: 370 VGLSGGGFGFSMHYGGNAQASSG-ARVVPMISQGNNAVKSVIPASRVSEAILNPDKEIDF 428
Query: 346 -------GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLP 398
++K +Y +N L + N L +ALR D V+ H+ + T TA F+D++
Sbjct: 429 KGKKLKLPKIKMIYNCGANLLGHEADTNELIRALRTLDC-VIVHEPWWTPTAKFADIIFA 487
Query: 399 ANTFFERLDIV--DSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKALG--------IKN 446
+ + ER DI SY V V + K + E+ R +A +G ++
Sbjct: 488 STSTMERDDITFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQLALRVGGNETEQRFTES 547
Query: 447 PYLYESDEEVIRKVLEANRISFEELKKKGFV--KIPEGERKW---------------NTP 489
E + + K SF++ + GFV +IPE RK+ +T
Sbjct: 548 KSYMEWIKGLYEKSDGHTLKSFDQFWRDGFVEFEIPENARKFVPHAKFRQDPINNKVDTE 607
Query: 490 SGKIEFYSQRAVKRGLSPFPEY-----------KKFKGKYPLRLLSPTYRMTVTSQYHNT 538
SGKI+ + Q+ L+ F + K YP L+SP + V SQ NT
Sbjct: 608 SGKIQIFFQKCADFKLADFKGHPTWFEPAEWLGSKMAEIYPFHLISPHPKYCVNSQLDNT 667
Query: 539 HGIIDSNL------YMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYK 592
+ + DA + GI+ G+ V VFN G++ +T+++ GV+ + +
Sbjct: 668 WVRTTYKIQGRGPVMITELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQGVLSIQE 727
Query: 593 AFW 595
W
Sbjct: 728 GAW 730
>gb|AAG37855.1|AF298190_5 (AF298190) NAD-dependent formate dehydrogenase alpha subunit
[Sinorhizobium meliloti]
Length = 959
Score = 140 bits (349), Expect = 5e-32
Identities = 169/668 (25%), Positives = 284/668 (42%), Gaps = 82/668 (12%)
Query: 9 CYDTCSIISEFRNGKLIVKGNP--EHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEG-- 64
C CS +E R G+ +V+ P + RG C KG + + +DR+ P+++E
Sbjct: 258 CGVGCSFKAEMR-GEELVRMVPWKDGQANRGHSCVKGRFAYGYSNHRDRILNPMVREKVT 316
Query: 65 DEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTI 124
D + E +W++A + VA + + + +YG +SV + + + + +
Sbjct: 317 DPWREVTWEEAFAHVASEFRRIQYQYGRDSVGGITSSRCTNEETFLVQKLVRAGFGNNNV 376
Query: 125 D--GGICDRAGQEALKDIYGTAVGVDPEKLKEHK-LIVYWGINAFWTNLHGFMFAK---- 177
D +C L +GT+ G EH + V G N T+ H ++
Sbjct: 377 DTCARVCHSPTGYGLNQTFGTSAGTQDFDSVEHTDVAVIIGANP--TDGHPVFASRLKKR 434
Query: 178 -RNNLEIWTVDVVRTETAK----RSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRE 232
R ++ +D R + + + ++P T+V +A V++ E L +E F+RE
Sbjct: 435 LRQGAKLIVIDPRRIDLVRSAHVEASYHLPLKPGTNVAILTAIAHVIVTEGLANEAFIRE 494
Query: 233 NVYGFEEFKNYVIKLSLNYVSQE-----TGVEVEEIREFAREFAEK-KGIIHIGYGFQRS 286
+ EF+++ ++ + S E TGV E +R AR +A G I+ G G
Sbjct: 495 RC-DWSEFEDWAAFVAEPHHSPEATEAYTGVPPELVRGAARLYATGGNGAIYYGLGVTEH 553
Query: 287 LAGGEAVRAIAILPALVGH--RFGF----IYDMKTIDKSYAEAKF--------------- 325
G V AIA L L G+ R G + + S F
Sbjct: 554 SQGSTTVMAIANLAMLTGNIGRPGVGVNPLRGQNNVQGSCDMGSFPHELPGYRHISDDAT 613
Query: 326 -----------LRTKPELRIPQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRK 374
L +P LRIP M +A +G K LY+ + L S P+ + L
Sbjct: 614 REIFEKLWGVTLNHEPGLRIPNM--LDAAVEGTFKGLYVQGEDILQSDPDTKHVAAGLAA 671
Query: 375 NDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNSEV 434
+ VV HD+FL +TA ++ V LP +TF E+ + R + + G ++ EV
Sbjct: 672 MEC-VVVHDLFLNETANYAHVFLPGSTFLEKDGTFTNAERRINRVRRVMRPKNGYADWEV 730
Query: 435 TRLIAKALGIKNPYLYESD--EEVIRKVLEANRISFEELKKKGFVKIPEGERKWNTPSGK 492
T+ +A+A+G+ Y + SD +E+ +S++ L K G V+ P E+ P G
Sbjct: 731 TQKMAQAMGLAWNYRHPSDIMDEIAATTPSFAMVSYDYLDKMGSVQWPCNEK---APLGS 787
Query: 493 IEFYSQRAVKRGLSPF--PEY----KKFKGKYPLRLLSPTY--RMTVTSQYHNTHGII-- 542
+ V RG F EY ++ ++PL L + + V +Q T ++
Sbjct: 788 PIMHVDGFV-RGKGKFIRTEYVATDERTGPRFPLLLTTGRILSQYNVGAQTRRTENVVWH 846
Query: 543 -DSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKLLGW 601
+ L ++P DA +RGI+DGD V + + +G + +T+ V PGVV Y F
Sbjct: 847 AEDRLEIHPHDAEQRGIRDGDWVRLASRSGDTTLRALITDRVAPGVV--YTTFHHP--ST 902
Query: 602 NVNFLTTD 609
N +TTD
Sbjct: 903 QANVITTD 910
>pdb|1FDO| Oxidized Form Of Formate Dehydrogenase H From E. Coli
>gi|2392332|pdb|1FDI| Oxidized Form Of Formate
Dehydrogenase H From E. Coli Complexed With The
Inhibitor Nitrite >gi|2392039|pdb|1AA6| Reduced Form Of
Formate Dehydrogenase H From E. Coli
Length = 715
Score = 140 bits (349), Expect = 5e-32
Identities = 165/678 (24%), Positives = 287/678 (41%), Gaps = 120/678 (17%)
Query: 9 CYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKD------RLKLPLIK 62
C C I NGK++ + +G LC KG W D RLK P+I+
Sbjct: 11 CASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYY--GWDFINDTQILTPRLKTPMIR 68
Query: 63 E--GDEFNETSWDKAISLVAEKLKEMIKEYGSESV---------------LVYKYAGDRG 105
G + SWD+A++ VAE+L + ++YG +++ ++ K+A R
Sbjct: 69 RQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFA--RA 126
Query: 106 VV---NYYFPMRLFHYLNASTIDGGICDRAGQEALKDIYGTAV----GVDPEKLKEHKLI 158
V+ N R+ H + + + + + A A+ +I T + G +P H ++
Sbjct: 127 VIGTNNVDCCARVXHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPAD--SHPIV 184
Query: 159 VYWGINAFWTNLHGFMFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKV 218
INA KRN +I D + ETA+ +D ++ +++ + V
Sbjct: 185 ANHVINA-----------KRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHV 233
Query: 219 MIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAE-KKGII 277
+IEENLYD+ FV GFEE++ V + V TGV EIR+ AR +A+ K I
Sbjct: 234 IIEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAI 293
Query: 278 HIGYGFQRSLAGGEAVRAIAILPALVG---------------HRFGFIYDMKTIDKSYA- 321
G G + G E VR++ L L G + DM + +Y
Sbjct: 294 LWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPG 353
Query: 322 ---------EAKFLRTKPELRIPQ------MELTEAIEDGRVKFLYIYNSNPLASYPNQN 366
KF + +P EL G V+ YI +PL + +
Sbjct: 354 YQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELS 413
Query: 367 RLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDI---VDSYYHRYVLLNEPV 423
+RKA ++ V+ DIF+T TA +DV+LP+ ++ E + D + R+ EP
Sbjct: 414 AVRKAFEDLEL-VIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEP- 471
Query: 424 AKGPGKSNSEVTRLIAKALGIKNPYLYESDEEVIRKVL----EANRISFEELKKKGFVKI 479
K K++ ++ IA +G P Y + +E+ ++ + ++E++ + GF++
Sbjct: 472 -KWDLKTDWQIISEIATRMGY--PMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQW 528
Query: 480 P--------EG-----ERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPLRLLSPT 526
P +G + K++TP+G +F++ V K +YP+ +LS
Sbjct: 529 PCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWV-------APIDKLTDEYPM-VLSTV 580
Query: 527 YRM------TVTSQYHNTHGIIDSNLY--MNPKDAAERGIKDGDEVIVFNENGKIKTKIK 578
+ ++T + D Y +N +DA GI+D V V + GKI T+ +
Sbjct: 581 REVGHYSCRSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQ 640
Query: 579 LTEDVPPGVVLLYKAFWV 596
+++ G + + +W+
Sbjct: 641 VSDRPNKGAIYMTYQWWI 658
>gb|AAA23754.1| (M13563) formate dehydrogenase [Escherichia coli]
Length = 715
Score = 140 bits (349), Expect = 5e-32
Identities = 165/678 (24%), Positives = 287/678 (41%), Gaps = 120/678 (17%)
Query: 9 CYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKD------RLKLPLIK 62
C C I NGK++ + +G LC KG W D RLK P+I+
Sbjct: 11 CASGCKINVVVDNGKIVRAEAAQGKTNQGTLCLKGYY--GWDFINDTQILTPRLKTPMIR 68
Query: 63 E--GDEFNETSWDKAISLVAEKLKEMIKEYGSESV---------------LVYKYAGDRG 105
G + SWD+A++ VAE+L + ++YG +++ ++ K+A R
Sbjct: 69 RQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFA--RA 126
Query: 106 VV---NYYFPMRLFHYLNASTIDGGICDRAGQEALKDIYGTAV----GVDPEKLKEHKLI 158
V+ N R+ H + + + + + A A+ +I T + G +P H ++
Sbjct: 127 VIGTNNVDCCARVXHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPAD--SHPIV 184
Query: 159 VYWGINAFWTNLHGFMFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKV 218
INA KRN +I D + ETA+ +D ++ +++ + V
Sbjct: 185 ANHVINA-----------KRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHV 233
Query: 219 MIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAE-KKGII 277
+IEENLYD+ FV GFEE++ V + V TGV EIR+ AR +A+ K I
Sbjct: 234 IIEENLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAI 293
Query: 278 HIGYGFQRSLAGGEAVRAIAILPALVG---------------HRFGFIYDMKTIDKSYA- 321
G G + G E VR++ L L G + DM + +Y
Sbjct: 294 LWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPG 353
Query: 322 ---------EAKFLRTKPELRIPQ------MELTEAIEDGRVKFLYIYNSNPLASYPNQN 366
KF + +P EL G V+ YI +PL + +
Sbjct: 354 YQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELS 413
Query: 367 RLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDI---VDSYYHRYVLLNEPV 423
+RKA ++ V+ DIF+T TA +DV+LP+ ++ E + D + R+ EP
Sbjct: 414 AVRKAFEDLEL-VIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEP- 471
Query: 424 AKGPGKSNSEVTRLIAKALGIKNPYLYESDEEVIRKVL----EANRISFEELKKKGFVKI 479
K K++ ++ IA +G P Y + +E+ ++ + ++E++ + GF++
Sbjct: 472 -KWDLKTDWQIISEIATRMGY--PMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQW 528
Query: 480 P--------EG-----ERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPLRLLSPT 526
P +G + K++TP+G +F++ V K +YP+ +LS
Sbjct: 529 PCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWV-------APIDKLTDEYPM-VLSTV 580
Query: 527 YRM------TVTSQYHNTHGIIDSNLY--MNPKDAAERGIKDGDEVIVFNENGKIKTKIK 578
+ ++T + D Y +N +DA GI+D V V + GKI T+ +
Sbjct: 581 REVGHYSCRSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQ 640
Query: 579 LTEDVPPGVVLLYKAFWV 596
+++ G + + +W+
Sbjct: 641 VSDRPNKGAIYMTYQWWI 658
>gi|11499961 molybdopterin oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus] >gi|7483880|pir||H69547
molybdopterin oxidoreductase, molybdopterin binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650704|gb|AAB91274.1| (AE001111) molybdopterin
oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus]
Length = 822
Score = 139 bits (348), Expect = 7e-32
Identities = 183/709 (25%), Positives = 294/709 (40%), Gaps = 160/709 (22%)
Query: 9 CYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDE- 66
C CSI E R+GK+ + G P+HPI G +C +G + ++ DRLK PLI+ G++
Sbjct: 49 CPAACSIQVEVRDGKVHRIHGTPDHPINNGKICARGNAGVQRVYNPDRLKKPLIRTGEKG 108
Query: 67 ---FNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRG---VVNYYFPMRLFHYLN 120
F E SW++A+SL+A K+KE +E G +Y G G YY P
Sbjct: 109 TWSFREASWEEALSLIASKVKEY-REMGHP-----EYIGMLGGWLPCTYYKPFFKAFLAA 162
Query: 121 ASTIDGG-----ICDRAGQEALKDIYGTAVGVDPEKLKEHK-----LIVYWGINAFWTNL 170
T +GG +C + K YG G PE L +++ +++ + + +
Sbjct: 163 LGTPNGGGVPEALCFLSKALGWKSAYG--FGAHPELLTDYENARYVIMLRRNVAGSISVV 220
Query: 171 HGFMFAK-RNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDF 229
HG+ + R ++ +D +ETA ++D + ++P TD+ F L + V+I E LYD +F
Sbjct: 221 HGWRLGQNRRKFKLVVLDPRYSETAAKADVWLPIKPGTDLAFLLAMMNVIINEKLYDSNF 280
Query: 230 VRE--------------NVYGFEEFKNYVI------------KLSLNYVSQETGVEVEEI 263
+ + V+ K Y++ L + E VE E++
Sbjct: 281 LAKYSNAPMLLKDGKPFKVWDENGKKKYLVFDLAKGAAVEHDSAMLPALEGEYEVEGEKV 340
Query: 264 ------------------------------REFAREFAEKKGIIHIGYGFQRSLAGGEAV 293
RE AREFA ++G+I G+ +
Sbjct: 341 IPAFEALKRRVAEYTPEWAEGITDIEAKKIREIAREFALRRGVIDSGWHGPKYRNSLLTW 400
Query: 294 RAIAILPALVGH-------RFGFIYDMKTIDKSYAEA---KFLRTKPELR-IPQMELTEA 342
RA AI+ ALVG F + T +S EA LR E R I L
Sbjct: 401 RAAAIVNALVGSVNNDGGLLFTGLAQFVTSKESTTEAPSQSVLRMWAEKRGIATAFLGHT 460
Query: 343 I----------EDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALF 392
+ + +K L++ N L + P + + +AL+K D F+V DI D +
Sbjct: 461 VQAFYDAIVNEDPYPIKMLFVVGHNLLMNMPERQKWEEALKKLD-FMVAVDILPQDHLYY 519
Query: 393 SDVVLPANTFFERLDIVDSY-------YHRYVLLNEPV----------AKGPGKSNSEVT 435
+DVVLP +T+ E+ D + +H V EP+ + + +E T
Sbjct: 520 ADVVLPESTYIEKDDPLFPIAYAPAFGFHTRVKAIEPIYDTKHVIEMMVEIASRLGTEDT 579
Query: 436 --RLIAKALGI-----KNPYLYESDEEVIRKVLEANRISFEELKKKGFV-KIPEGERKWN 487
+ ++K LG+ K+ Y E + R EA +++ EL KG+V K + +N
Sbjct: 580 FFKALSKGLGVDAEKLKSYYHGEGVAGIRRAQAEAKGVNYNELLSKGYVLKAGRDKIVYN 639
Query: 488 --------TPSGKIEFYS---QRAVKRGLSPFPE--YKKFKGKYPLRLL-SPTYRMTVTS 533
TP+GK+E +S + P+ + K K R L S + + +
Sbjct: 640 MPYKQPLPTPTGKVEIFSFMLANFASKASEPYWDALIKWVPPKVSERKLGSNEFYLAYSR 699
Query: 534 QYHNTHG-----------IIDSNLY-----MNPKDAAERGIKDGDEVIV 566
TH I D+ LY +N + AAE GI++GD V+V
Sbjct: 700 SPFTTHSSTSDNPLLAKLIDDAELYYKGIWINSERAAELGIRNGDRVVV 748
>emb|CAC11567.1| (AL445064) formate dehydrogenase related protein [Thermoplasma
acidophilum]
Length = 996
Score = 139 bits (347), Expect = 9e-32
Identities = 155/629 (24%), Positives = 272/629 (42%), Gaps = 90/629 (14%)
Query: 24 LIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLVAEKL 83
L V+ PE P C KG + +S DRL PLI++GD F SWD+A+ L+A +L
Sbjct: 303 LKVQPKPESPANGISTCVKGKFGWDFVNSPDRLTEPLIRDGDRFRMASWDEALDLIASRL 362
Query: 84 KEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTIDGG--ICDRAGQEALKDIY 141
+E+ ++YG +++ + Y + +D C L
Sbjct: 363 REIKEKYGPDAIEFIASSKGTNEEAYLVQKLARQVFGTNNVDNSSRFCQAPATTGLWRTV 422
Query: 142 GTAVGVDPEKLKE---HKLIVYWGINAFWTNLHGFMFAKR----NNLEIWTVDVVRTETA 194
G G D + + LI+ G N ++ KR N +I D+ E A
Sbjct: 423 G--YGGDAGSISDLYVSDLILAVGTNTAESHPVIATRIKRAHKLNGQKIIVADLRMHEMA 480
Query: 195 KRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQ 254
+R+D F RP TD+++ VAK ++++ +F+ + V ++E+ + +L + +
Sbjct: 481 RRADVFIHPRPGTDLVWINAVAKYIVDQGWQAREFIEKRVNFYDEYVKSLEPFTLEFAEK 540
Query: 255 ETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEAVRAIAILPALVGHR------- 306
+GV ++IR+ A E K + I G + AG + A++ L L G+
Sbjct: 541 VSGVSADDIRKIATMIHEAKSMAVIWAMGVTQHQAGSDTSTALSNLLLLTGNYGRPGTGG 600
Query: 307 --------------FGFIYDMKTIDKSYAEAKFLRTKPEL---RIPQME------LTEAI 343
FG + +S ++ K + E +IP EAI
Sbjct: 601 YPLRGHNNVQGASDFGAMSAYLPGYQSVSDEKARKKIEEYWKCQIPDKPGYDNNTCLEAI 660
Query: 344 EDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFF 403
R++ +Y+ + + + +RK L K D F+V D+FL++TA ++DVVLPA
Sbjct: 661 NSDRIRAMYVVGEELVETGSDSEYIRKQLEKLD-FLVVEDMFLSETAKYADVVLPAAASV 719
Query: 404 ERLDI---VDSYYHRYVLLNEPVAKGPGKSNSEVTRLIAKALGIKNPYLYESD--EEVIR 458
E+ + R + EP+ G + + ++ + +A LG Y + S+ +EV +
Sbjct: 720 EKEGTFVNTERRIQRIYRVMEPL--GNSRPDWQIIQDVANRLGAGWNYRHPSEIMQEVSK 777
Query: 459 KVLEANRISFEELKKKGFVKIPEGERKWNTPSGKIEFYSQRAVKRGLSPFPEYK-KFKGK 517
+S+E L+ G ++ P + +TP Y+ R FP+ K +F
Sbjct: 778 IAPIFAGVSYERLEGFGSLQWPVSDGGKDTPL----LYTDRF------NFPDGKARF--- 824
Query: 518 YPLRLLSPTYRMTVTSQY--HNTHGIIDSNLY---------------------MNPKDAA 554
YPL+ P +TV ++ H +G I + + ++P+ AA
Sbjct: 825 YPLKYSPP---LTVDQEFDLHLNNGRILEHFHEGNETYRSPGLKEKVPGTFVEVSPELAA 881
Query: 555 ERGIKDGDEVIVFNENGKIKTKIKLTEDV 583
ERG+KDGD V + ++ G IK ++ +T+ V
Sbjct: 882 ERGLKDGDLVRITSKWGSIKVRVLVTDRV 910
>gb|AAD13462.1| (AE000481) selenopolypeptide subunit of formate dehydrogenase H
[Escherichia coli K12]
Length = 715
Score = 139 bits (346), Expect = 1e-31
Identities = 160/671 (23%), Positives = 279/671 (40%), Gaps = 106/671 (15%)
Query: 9 CYDTCSIISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKD------RLKLPLIK 62
C C I NGK++ + +G LC KG W D RLK P+I+
Sbjct: 11 CASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYY--GWDFINDTQILTPRLKTPMIR 68
Query: 63 E--GDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYA-GDRGVVNYYFPMRLFHYL 119
G + SWD+A++ VAE+L + ++YG +++ + G NY +
Sbjct: 69 RQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVI 128
Query: 120 NASTID-----------GGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWT 168
+ +D G+ G A+ + D L+ +G N +
Sbjct: 129 GTNNVDCCARVUHGPSVAGLHQSVGNGAMSNAINEIDNTD--------LVFVFGYNPADS 180
Query: 169 N---LHGFMFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLY 225
+ + + AKRN +I D + ETA+ +D ++ +++ + V+IEENLY
Sbjct: 181 HPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLY 240
Query: 226 DEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAE-KKGIIHIGYGFQ 284
D+ FV GFEE++ V + V TGV EIR+ AR +A+ K I G G
Sbjct: 241 DKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVT 300
Query: 285 RSLAGGEAVRAIAILPALVG---------------HRFGFIYDMKTIDKSYA-------- 321
+ G E VR++ L L G + DM + +Y
Sbjct: 301 QFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDP 360
Query: 322 --EAKFLRTKPELRIPQ------MELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALR 373
KF + +P EL G V+ YI +PL + + +RKA
Sbjct: 361 ANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFE 420
Query: 374 KNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDI---VDSYYHRYVLLNEPVAKGPGKS 430
++ V+ DIF+T TA +DV+LP+ ++ E + D + R+ EP K K+
Sbjct: 421 DLEL-VIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEP--KWDLKT 477
Query: 431 NSEVTRLIAKALGIKNPYLYESDEEVIRKVL----EANRISFEELKKKGFVKIP------ 480
+ ++ IA +G P Y + +E+ ++ + ++E++ + GF++ P
Sbjct: 478 DWQIISEIATRMGY--PMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSD 535
Query: 481 --EG-----ERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPLRLLSPTYRM---- 529
+G + K++TP+G +F++ V K +YP+ +LS +
Sbjct: 536 ADQGTSYLFKEKFDTPNGLAQFFTCDWV-------APIDKLTDEYPM-VLSTVREVGHYS 587
Query: 530 --TVTSQYHNTHGIIDSNLY--MNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPP 585
++T + D Y +N +DA GI+D V V + GKI T+ ++++
Sbjct: 588 CRSMTGNCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDRPNK 647
Query: 586 GVVLLYKAFWV 596
G + + +W+
Sbjct: 648 GAIYMTYQWWI 658
>pir||H64468 formate dehydrogenase (EC 1.2.1.2) alpha chain - Methanococcus
jannaschii
Length = 535
Score = 138 bits (345), Expect = 2e-31
Identities = 136/474 (28%), Positives = 222/474 (46%), Gaps = 73/474 (15%)
Query: 174 MFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVREN 233
M AK +I +D RT TAK SD + Q+ P T+V + V+I+ENL D++F++
Sbjct: 42 MRAKDKGAKIIVIDPRRTITAKNSDIYLQIIPGTNVALINAMINVIIKENLIDKEFIKNR 101
Query: 234 VYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREF--AEKKGIIHIGYGFQRSLAGGE 291
GFE+ K + K + Y S+ GV+ E I E A+ + AE+ II+ G + G +
Sbjct: 102 TEGFEKLKEIIKKYTPEYASKICGVDKELIIESAKIYGNAERASIIYC-MGVTQFTHGVD 160
Query: 292 AVRAIAILPALVGH-------------------------------RFGFIYDMKTIDKSY 320
AV+A+ L + G+ + + D + + Y
Sbjct: 161 AVKALCNLAMITGNIGKEGTGVNPLRGQNNVQGACDMGALPNVFPGYQKVEDGYKLFEEY 220
Query: 321 AEAKFLRTKPELRIPQMELTEAIEDGR-VKFLYIYNSNPLASYPNQNRLRKALRKNDIFV 379
+ L L IP+M E G+ +KFLYI NP+ S P+ + KAL+ D F+
Sbjct: 221 WKTD-LNPNSGLTIPEM----IDESGKNIKFLYIMGENPIVSDPDVKHVEKALKSLD-FL 274
Query: 380 VTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNSE--VTRL 437
V DIFLT+TA +DVVLPA + E+ + R L+ + V PG++ + + +
Sbjct: 275 VVQDIFLTETAKLADVVLPAACWAEKDGTFTNTERRVQLIRKAV-NPPGEALEDWIIIKK 333
Query: 438 IAKALGIKNPYLYESDEEV---IRKVLEANR-ISFEELKKKGF-----------VKIPEG 482
+A+ LG + + Y E++ IRKV R I+++ LK G KI
Sbjct: 334 LAEKLGYGDKFNYNKVEDIFNEIRKVTPQYRGITYKRLKIDGIHWPCLDENHSGTKILHK 393
Query: 483 ERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPL-----RLLSPTYRMTVTSQYHN 537
+ K+ T +G+ + + R ++ P+ YP R++ + T+T + N
Sbjct: 394 D-KFLTDNGRGKIFPVEY--REVAELPDKD-----YPFILTTGRIIFHYHTGTMTRRCKN 445
Query: 538 -THGIIDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLL 590
I + + +NP DA I++GD V V + G+I K ++TED+ GVV +
Sbjct: 446 LVEEINEPFIEINPDDAKSLKIENGDLVKVISRRGEITAKARITEDIKKGVVFM 499
>sp|O87948|TORA_SHEMA TRIMETHYLAMINE-N-OXIDE REDUCTASE PRECURSOR (TMAO REDUCTASE)
(TRIMETHYLAMINE OXIDASE) >gi|4699615|pdb|1TMO|
Trimethylamine N-Oxide Reductase From Shewanella
Massilia >gi|3327031|emb|CAA06851.1| (AJ006085)
trimethylamine-N-oxide reductase [Shewanella massilia]
Length = 829
Score = 138 bits (344), Expect = 2e-31
Identities = 162/657 (24%), Positives = 269/657 (40%), Gaps = 119/657 (18%)
Query: 62 KEGD-EFNETSWDKAISLVAEKLKEMIKEYGSESVLV----YKYAGDRGVVNYYFPMRLF 116
+ GD F +WDKA++L L E+ +YG + ++ G + +
Sbjct: 108 QRGDFRFVRVTWDKALTLFKHSLDEVQTQYGPSGLHAGQTGWRATGQLHSSTSHMQRAVG 167
Query: 117 HYLNASTIDGGICDRAGQEALKDIYGT----AVGVDPEKLKEHK-LIVYWGINAF----- 166
+ N G AGQ L + G+ A G + EH IV W + +
Sbjct: 168 MHGNYVKKIGDYSTGAGQTILPYVLGSTEVYAQGTSWPLILEHSDTIVLWSNDPYKNLQV 227
Query: 167 -WTNLHGFMFA---------KRNNLEIWTVDVVRTET-AKRSDKFFQVRPDTDVLFALGV 215
W FA K+ + + ++D V T+T A + V P TDV L +
Sbjct: 228 GWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLYVNPQTDVTLMLAI 287
Query: 216 AKVMIEENLYDEDFVRENVYGFEEFKNYV------IKLSLNYVSQETGVEVEEIREFARE 269
A MI + LYD+ F++ GFEEF YV + + + + GVE IR+ A+
Sbjct: 288 AHEMISKKLYDDKFIQGYSLGFEEFVPYVMGTKDGVAKTPEWAAPICGVEAHVIRDLAKT 347
Query: 270 FAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH--------RFGFIYDMKTIDKSYA 321
+ + +G+ QR G + A+L ++G +G Y + S A
Sbjct: 348 LVKGRTQFMMGWCIQRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHYSSIGVPSSGA 407
Query: 322 EAK--FLRTKPELRIPQMELTE----------------AIEDGR-------------VKF 350
A F R E + P + ++ +E G+ +K
Sbjct: 408 AAPGAFPRNLDENQKPLFDSSDFKGASSTIPVARWIDAILEPGKTIDANGSKVVYPDIKM 467
Query: 351 LYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFER--LDI 408
+ +NP + ++NR+++A K + VVT D+ T T FSD+VLPA T +ER +D+
Sbjct: 468 MIFSGNNPWNHHQDRNRMKQAFHKLEC-VVTVDVNWTATCRFSDIVLPACTTYERNDIDV 526
Query: 409 VDSYYHRYVLLNEPVAKG--PGKSNSEVTRLIAKALGIKNPYL-----YESDEEVIRKVL 461
+Y +R +L + + + S+ E+ A LG + Y E E + +
Sbjct: 527 YGAYANRGILAMQKMVEPLFDSLSDFEIFTRFAAVLGKEKEYTRNMGEMEWLETLYNECK 586
Query: 462 EANRISFE-----ELKKKGFVKIPEGE--------------RKWNTPSGKIEFYSQRAVK 502
AN FE K+G+V +GE TPSG IE +S++ +
Sbjct: 587 AANAGKFEMPDFATFWKQGYVHFGDGEVWTRHADFRNDPEINPLGTPSGLIEIFSRKIDQ 646
Query: 503 RGLSPFPEYKKF------------KGKYPLRLLS--PTYR----MTVTSQYHNTHGIIDS 544
G + + K+P+ L S P R M + +Y T+ +
Sbjct: 647 FGYDDCKGHPTWMEKTERSHGGPGSDKHPIWLQSCHPDKRLHSQMCESREYRETYAVNGR 706
Query: 545 N-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKLLG 600
+Y++P DA RGIKDGD V VFN+ G++ ++++ P G+V +++ W +G
Sbjct: 707 EPVYISPVDAKARGIKDGDIVRVFNDRGQLLAGAVVSDNFPKGIVRIHEGAWYGPVG 763
>gb|AAB80862.1| (U93874) formate dehydrogenase chain A [Bacillus subtilis]
Length = 982
Score = 138 bits (343), Expect = 3e-31
Identities = 150/625 (24%), Positives = 263/625 (42%), Gaps = 77/625 (12%)
Query: 22 GKLIVKGNP--EHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLV 79
G+ I+K P + P+ C KG + +SK+R+ PLI++ F E+SW++A+ LV
Sbjct: 287 GRDILKIQPVSDAPVNAISTCVKGKFGWDFVNSKERITKPLIRKNGAFVESSWEEALDLV 346
Query: 80 AEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTIDGGICDRAGQEALKD 139
A +L + ++YG SV + NY + +D C R Q D
Sbjct: 347 ASRLGSIKEQYGKGSVGFISSSKITNEENYVIQKLARQVFETNNVDN--CSRYCQSPATD 404
Query: 140 IYGTAVGVDPEK-----LKEHKLIVYWGINAFWTNLHGFMFA------KRNNLEIWTVDV 188
VG+ + + + L++ G N H + K + ++ D+
Sbjct: 405 GLFRTVGMGGDAGTIKDIAKAGLVIIVGANP--AEGHPVLATRVKRAHKLHGQKLIVADL 462
Query: 189 VRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLS 248
+ E A+RSD F + TD ++ + V K MI++ +D+ F+ ENV FE++K + +
Sbjct: 463 RKNEMAERSDLFISPKQGTDQVWLMAVTKYMIDQGWHDQAFIDENVNYFEDYKETLKTYT 522
Query: 249 LNYVSQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEAVRAIAILPALVGHRF 307
L+Y + TG+ E I + A + G + G G ++ G + AI+ L G+
Sbjct: 523 LDYAERITGLSKENIIQIAEMIRDADGTCVLWGMGVTQNTGGSDTSAAISNLLLATGNYR 582
Query: 308 -------------------------GFIYDMKTIDKSYAEAKF-------LRTKPELRIP 335
G++ + I A AKF + KP L
Sbjct: 583 RPGAGAYPLRGHNNVQGACDMGTLPGWLPGYQHITDDKARAKFEEAYGVEIDGKPGL--D 640
Query: 336 QMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDV 395
+++ AIE+G++K +Y+ + N N + L D FVV DIFL+ TA ++DV
Sbjct: 641 NIQMLHAIEEGKMKAMYLVGEDMALVDSNANHVHDILSSLDFFVV-QDIFLSRTAQYADV 699
Query: 396 VLPANTFFERLDIVDSYYHRYVLLNEPV-AKGPGKSNSEVTRLIAKALGIKNPYLYESDE 454
VLPA E+ + R L + + G K + + + +A LG Y + SD
Sbjct: 700 VLPATPSLEKDGTFTNTERRVQRLYQALPTLGDAKPDWWIIQEVANRLGANWNYSHPSD- 758
Query: 455 EVIRKVLEANRISFEELKKKGFVKIPEGERK--WNTPSGKIE--------FYSQRAVKRG 504
+ + S L K ++ EG W + +G+ + + +
Sbjct: 759 ------IFSEMASLSPLFAKASYEVLEGWNSFLWGSFTGESTPLLYEDGFNFPDKKARFA 812
Query: 505 LSPFPEYKKFKGKYPL-----RLLSPTYRMTVTSQYHNTHGIIDS-NLYMNPKDAAERGI 558
LS + E F +Y L R+L + +T++ + + + ++P+ A ERG+
Sbjct: 813 LSDWTEPAAFPEEYDLHINNGRMLEHFHEGNMTNKSKGIQAKVPNVFVEISPELAQERGV 872
Query: 559 KDGDEVIVFNENGKIKTKIKLTEDV 583
DG V + + G +K +T+ V
Sbjct: 873 CDGSLVRLVSPFGAVKLNALITDRV 897
>pir||D69974 formate dehydrogenase homolog yrhE - Bacillus subtilis
>gi|2635168|emb|CAB14664.1| (Z99117) similar to formate
dehydrogenase [Bacillus subtilis]
Length = 980
Score = 138 bits (343), Expect = 3e-31
Identities = 150/625 (24%), Positives = 263/625 (42%), Gaps = 77/625 (12%)
Query: 22 GKLIVKGNP--EHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLV 79
G+ I+K P + P+ C KG + +SK+R+ PLI++ F E+SW++A+ LV
Sbjct: 285 GRDILKIQPVSDAPVNAISTCVKGKFGWDFVNSKERITKPLIRKNGAFVESSWEEALDLV 344
Query: 80 AEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTIDGGICDRAGQEALKD 139
A +L + ++YG SV + NY + +D C R Q D
Sbjct: 345 ASRLGSIKEQYGKGSVGFISSSKITNEENYVIQKLARQVFETNNVDN--CSRYCQSPATD 402
Query: 140 IYGTAVGVDPEK-----LKEHKLIVYWGINAFWTNLHGFMFA------KRNNLEIWTVDV 188
VG+ + + + L++ G N H + K + ++ D+
Sbjct: 403 GLFRTVGMGGDAGTIKDIAKAGLVIIVGANP--AEGHPVLATRVKRAHKLHGQKLIVADL 460
Query: 189 VRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLS 248
+ E A+RSD F + TD ++ + V K MI++ +D+ F+ ENV FE++K + +
Sbjct: 461 RKNEMAERSDLFISPKQGTDQVWLMAVTKYMIDQGWHDQAFIDENVNYFEDYKETLKTYT 520
Query: 249 LNYVSQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEAVRAIAILPALVGHRF 307
L+Y + TG+ E I + A + G + G G ++ G + AI+ L G+
Sbjct: 521 LDYAERITGLSKENIIQIAEMIRDADGTCVLWGMGVTQNTGGSDTSAAISNLLLATGNYR 580
Query: 308 -------------------------GFIYDMKTIDKSYAEAKF-------LRTKPELRIP 335
G++ + I A AKF + KP L
Sbjct: 581 RPGAGAYPLRGHNNVQGACDMGTLPGWLPGYQHITDDKARAKFEEAYGVEIDGKPGL--D 638
Query: 336 QMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDV 395
+++ AIE+G++K +Y+ + N N + L D FVV DIFL+ TA ++DV
Sbjct: 639 NIQMLHAIEEGKMKAMYLVGEDMALVDSNANHVHDILSSLDFFVV-QDIFLSRTAQYADV 697
Query: 396 VLPANTFFERLDIVDSYYHRYVLLNEPV-AKGPGKSNSEVTRLIAKALGIKNPYLYESDE 454
VLPA E+ + R L + + G K + + + +A LG Y + SD
Sbjct: 698 VLPATPSLEKDGTFTNTERRVQRLYQALPTLGDAKPDWWIIQEVANRLGANWNYSHPSD- 756
Query: 455 EVIRKVLEANRISFEELKKKGFVKIPEGERK--WNTPSGKIE--------FYSQRAVKRG 504
+ + S L K ++ EG W + +G+ + + +
Sbjct: 757 ------IFSEMASLSPLFAKASYEVLEGWNSFLWGSFTGESTPLLYEDGFNFPDKKARFA 810
Query: 505 LSPFPEYKKFKGKYPL-----RLLSPTYRMTVTSQYHNTHGIIDS-NLYMNPKDAAERGI 558
LS + E F +Y L R+L + +T++ + + + ++P+ A ERG+
Sbjct: 811 LSDWTEPAAFPEEYDLHINNGRMLEHFHEGNMTNKSKGIQAKVPNVFVEISPELAQERGV 870
Query: 559 KDGDEVIVFNENGKIKTKIKLTEDV 583
DG V + + G +K +T+ V
Sbjct: 871 CDGSLVRLVSPFGAVKLNALITDRV 895
>pir||S57966 NarB protein - Oscillatoria chalybea >gi|2147816|pir||S65758
nitrate reductase (EC 1.7.99.4) chain A narB -
Oscillatoria chalybea >gi|899356|emb|CAA61613.1|
(X89445) NarB protein [Oscillatoria chalybea]
>gi|1587167|prf||2206299B nitrate reductase
[Oscillatoria chalybea]
Length = 737
Score = 134 bits (334), Expect = 3e-30
Identities = 152/646 (23%), Positives = 277/646 (42%), Gaps = 97/646 (15%)
Query: 26 VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDE--FNETSWDKAISLVAEKL 83
V+G+ EHP ++G +C KGA + H KDRL P+++E + F SWD+A++ + ++
Sbjct: 42 VQGDREHPSSQGMVCVKGATIAESLH-KDRLLYPMMRESLDKPFRRVSWDEALNAIVNRI 100
Query: 84 KEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLNASTIDGG--ICDRAGQEALKDI 140
+ + G+E++ +Y +G +YY +L L + D +C + A
Sbjct: 101 QTVRFTQGAEAICMYG-SGQFQTEDYYVAQKLMKGCLGTNNFDANSRLCMSSAVAAYIQS 159
Query: 141 YGT---AVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFA------KRNN--LEIWTVDVV 189
+G+ D L + +V G N H +F K+NN +++ VD
Sbjct: 160 FGSDGPPCCYDDLDLTDCAFLV--GTNT--AECHPIIFNRLRKHHKKNNGKVKMVVVDPR 215
Query: 190 RTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSL 249
RT TA+ +D ++P TD+ G+A +++ D F+ E F + +
Sbjct: 216 RTATAEAADLHLAIKPGTDIDLFNGMAYLLMRWGKIDTIFIDECTSNFPAYCEVIRHYPP 275
Query: 250 NYVSQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEAVRAIAIL--------- 299
V+++ G+ VEE+ AR +AE + ++ + G +S G R + L
Sbjct: 276 EVVARKCGITVEELETAARYWAESERVLSLWSMGINQSSEGTAKARTLINLHLMTAQIGK 335
Query: 300 -----------PALVGHRF---------GFIYDMKTIDKSYAEAKFL-----RTKPELRI 334
P +G R G+ +S E KF R PE +
Sbjct: 336 PGAGPFSLTGQPNAMGGREAGGLSHLLPGYRVVKNARHRSEVE-KFWGLPVGRIAPERGL 394
Query: 335 PQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSD 394
E+ +E G+V ++I +NP S P+ R +KAL ++ V + T+TA ++
Sbjct: 395 TVWEMILGLEMGKVGLVWIAATNPAVSMPDLERTKKALSRSPFTVYQDAYYPTETANYAH 454
Query: 395 VVLPANTFFERLDIVDSYYHRYVLLNE-PVAKGPGKSNSEVTRLIAKALGIKNPYLYESD 453
V+LPA + E+ ++ + R L G K++ E+ + + LG + + +
Sbjct: 455 VLLPAAQWSEKTGVMTNSERRITLCQAFRDRPGEAKADWEIFAEVGRRLGFVEQFNFANS 514
Query: 454 EEVIRKVLEANR--------ISFEELKKKGFVKIPEGER-------------KWNTPSGK 492
EV + + + I + L G ++ P E +++TP G+
Sbjct: 515 AEVYAEFTQLTKGRPCEQTGIGHQRLGADGPLQWPCPEEAGENNAARLYTDLRFHTPDGR 574
Query: 493 IEFYSQRAVKRGLS--PFPEYK------KFKGKYPLRLLSPTYRMTVTSQYHNTHGIIDS 544
+F + + RGL+ P P++ + G + L+ T R+ T Q H
Sbjct: 575 AKFAAYHS--RGLAEPPDPDFPFVLTNGRLYGHW--HTLTRTGRIEKTKQMHP-----QP 625
Query: 545 NLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLL 590
+ ++P+DA + GI+D D V V + G + K+T+ + PG V +
Sbjct: 626 FIEIHPRDAGKLGIEDEDWVEVRSRRGMARFPAKVTKAIAPGTVFV 671
>gb|AAB40292.1| (L49163) narB [Anabaena PCC7120]
Length = 746
Score = 131 bits (325), Expect = 3e-29
Identities = 145/670 (21%), Positives = 275/670 (40%), Gaps = 112/670 (16%)
Query: 26 VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEG--DEFNETSWDKAISLVAEKL 83
V+G+ HP ++G +C KGA + K+RL P+++E EF SWD+A L+ +++
Sbjct: 42 VRGDKAHPSSQGMVCVKGATIAESL-DKNRLHYPMVRESLDQEFRRVSWDEAFDLITKRI 100
Query: 84 KEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLNASTIDGGICDRAGQEALKDIYG 142
+ + G+E++ +Y +G +YY +L L ++ D R + Y
Sbjct: 101 QSVRFTQGAEAICMYG-SGQFQTEDYYIAQKLMKGCLGSNNFDAN--SRLCMSSAVSGYI 157
Query: 143 TAVGVDP-----EKLKEHKLIVYWGINAFWTNLHGFMF-------AKRNNLEIWTVDVVR 190
+ G D E L+ G N H +F K + +++ VD R
Sbjct: 158 QSFGADGPPCCYEDLELTDCAFLIGTNT--AECHPIVFNRLEKYHRKNHKVKMIVVDPRR 215
Query: 191 TETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLN 250
T TA+ +D ++P TD+ G+A +++ N+ D F+ + F + + S
Sbjct: 216 TPTAEAADLHLAIKPGTDIDLLNGIAHLLMRWNMIDVGFIDDCTRNFSAYAEVIRHYSPE 275
Query: 251 YVSQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEAVRAIAIL---------- 299
V+++ G+ +E++ +R + E + ++ + G +S G VR I L
Sbjct: 276 VVARQCGITIEDLETASRYWGESQRVLSLWSMGVNQSSEGTAKVRTIINLHLMTGQVGKP 335
Query: 300 -----------PALVGHRFGFI------YDMKTIDKSYAEAKFL------RTKPELRIPQ 336
A+ G G + Y + + AE + + P +
Sbjct: 336 GAGPFSLTGQPNAMGGREAGGLAHLLPGYRLVKNPQHRAELEAFWGFQPGQISPHPGLTA 395
Query: 337 MELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVV 396
++ +EDG V L+I +NP S P+ R +KAL ++ + T+T ++ V+
Sbjct: 396 WDMITGLEDGNVGLLWIAATNPAVSMPDLERTKKALLRSPFTIYQDAYHPTETTAYAHVL 455
Query: 397 LPANTFFERLDIVDSYYHRYVLLNEPVAKGP--GKSNSEVTRLIAKALGIKNPYLYESDE 454
LPA + E+ I+ + R V L + + P K + E+ + + LG ++ + + +
Sbjct: 456 LPAAQWGEKTGIMTN-SERRVTLCQAFRQPPREAKPDWEIFAEVGRRLGFEDKFAFTNSA 514
Query: 455 EVIRKVLEANR--------ISFEELKKKGFVKIPEG------------------------ 482
+V + + + IS ++L+ +G + P
Sbjct: 515 QVYAEFTQLTKGRPCDMSGISHQQLQAQGPTQWPHSSINIETQKPTQHPTVNSQQSTVTS 574
Query: 483 --------ERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPL-----RLLSPTYRM 529
+ +++TP G+ F + +GL+ P+ YP RL +
Sbjct: 575 QQSKRLYTDLRFHTPDGRARFGAY--YSKGLAEPPD-----PSYPFVLTTGRLYGHWHTQ 627
Query: 530 TVTSQYHNTHGI-IDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVV 588
T T + + + + ++P+DAA+ GI D V V + G K K+T+ + PG V
Sbjct: 628 TRTGRIEKIRAMHPEPFIEIHPRDAAKLGITDNVVVEVRSRRGSAKFPAKVTKAISPGTV 687
Query: 589 LLYKAFWVKL 598
+ W KL
Sbjct: 688 FV-PMHWGKL 696
>emb|CAA11235.1| (AJ223295) NAD-dependent formate dehydrogenase alpha subunit
[Ralstonia eutropha]
Length = 959
Score = 129 bits (322), Expect = 7e-29
Identities = 167/662 (25%), Positives = 269/662 (40%), Gaps = 70/662 (10%)
Query: 9 CYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLI--KEGD 65
C CS +E + K++ + + G C KG + KDR+ P+I K D
Sbjct: 253 CGVGCSFKAEMKGNKVVRMVPYKDGKANEGHACVKGRFAWGYATHKDRILKPMIRAKITD 312
Query: 66 EFNETSWDKAISLVAEKLKEMIKEYGSESV---LVYKYAGDRGVVNYYFPMRLFHYLNAS 122
+ E SW++AI A + K + E+G +S+ + + + G + F N
Sbjct: 313 PWREVSWEEAIDYAASQFKRIQAEHGKDSIGGIVSSRCTNEEGYLVQKLVRARFGNNNVD 372
Query: 123 TIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFAK----- 177
T +C LK G + G K E K V I A T+ ++
Sbjct: 373 TC-ARVCHSPTGYGLKQTLGESAGTQTFKSVE-KADVIMVIGANPTDGDPVFASRMKKGL 430
Query: 178 RNNLEIWTVDVVRTETAK----RSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVREN 233
R + VD R + R+D Q+RP T+V +A V++ E L +E F+ E
Sbjct: 431 RAGARLIVVDPRRIDLVDSPHIRADYHLQLRPGTNVALVTSLAHVIVTEGLLNEAFIAER 490
Query: 234 VY--GFEEFKNYVI--KLSLNYVSQETGVEVEEIREFAREFAEKKGI-IHIGYGFQRSLA 288
F++++++V + S + TG+ E + I+ G G
Sbjct: 491 CEDRAFQQWRDFVSLPENSPEAMESVTGIPAEHCAVPHACMPPAATLRIYYGLGVTEHAQ 550
Query: 289 GGEAVRAIAILPALVG----------------------------HRF-GFIYDMKTIDKS 319
G V IA L G H G+ + + +
Sbjct: 551 GSTTVMGIANLAMATGNIGREGVGVNPLRGQNNVQGSCDIGSFPHELPGYRHVSDSTTRG 610
Query: 320 YAEAKF---LRTKPELRIPQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKND 376
EA + + +P LRIP M EA G K LY + + S PN + +AL +
Sbjct: 611 LFEAAWNVEISPEPGLRIPNM--FEAALAGSFKGLYFQGEDIVQSDPNTQHVSEALSSME 668
Query: 377 IFVVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNSEVTR 436
VV DIFL +TA ++ V LP ++F E+ + R + + + ++ E T
Sbjct: 669 CIVV-QDIFLNETAKYAHVFLPGSSFLEKDGTFTNAERRISRVRKVMPPKARYADWEATI 727
Query: 437 LIAKALGIKNPYLYESD--EEVIRKVLEANRISFEELKKKGFVKIP-EGERKWNTPSGKI 493
L+A ALG Y + S+ +E+ R +S++ L K G ++ P + TP+ I
Sbjct: 728 LLANALGYPMDYKHPSEIMDEIARLTPTFAGVSYKRLDKLGSIQWPCNADAPEGTPTMHI 787
Query: 494 EFYSQRAVKRGLSPF-PEYKKFKGKYPL-----RLLSPTYRMTVTSQYHNTHGIIDSNLY 547
+ + + K ++ + P +K +PL R+LS T + N + + L
Sbjct: 788 DTFVRGKGKFIITKYVPTTEKITRAFPLILTTGRILSQYNVGGQTRRTDNVYWHAEDRLE 847
Query: 548 MNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKLLGWNVNFLT 607
++P DA ERGIKDGD V V + G + + E + PGVV Y F G NV +T
Sbjct: 848 IHPHDAEERGIKDGDWVGVQSRAGDTVLRAIVNERMQPGVV--YTTFHFPESGANV--IT 903
Query: 608 TD 609
TD
Sbjct: 904 TD 905
>pir||S47772 biotin sulfoxide reductase (EC 1.-.-.-) 1 - Escherichia coli
>gi|466689|gb|AAB18528.1| (U00039) biotin sulfoxide
reductase [Escherichia coli] >gi|1789973|gb|AAC76575.1|
(AE000432) biotin sulfoxide reductase [Escherichia coli
K12]
Length = 739
Score = 129 bits (321), Expect = 1e-28
Identities = 167/713 (23%), Positives = 279/713 (38%), Gaps = 141/713 (19%)
Query: 51 HSKDRLKLPLIKEG--------------DEFNETSWDKAISLVAEKLKEMIKEYGSESVL 96
HS R++ P++++G DEF SWD+A+ L+ ++ K + + YG S+
Sbjct: 14 HSNTRVRFPMVRKGFLASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASIF 73
Query: 97 VYKYAGDRGVVNYYFPMRLFHYLNASTIDGGICDRAGQ---EALKDIYGTAVGVD----- 148
Y V + L Y+ + GG G A + I VG
Sbjct: 74 AGSYGWRSNGVLHKASTLLQRYM---ALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQ 130
Query: 149 ----PEKLKEHKLIVYWGINAFWT-----------NLHGFMFAKRNNLEIWTVDVVRTET 193
P L+ ++V W N T L F + + ++ +D +R+ET
Sbjct: 131 QTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSET 190
Query: 194 AK-RSDKFFQVRP--DTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYV------ 244
DK V P TDV LG+A ++E +DE F+ G+ F +Y+
Sbjct: 191 VDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESDG 250
Query: 245 IKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVG 304
I + + ++ GV +IRE A F + ++ G+G QR G + I L A++G
Sbjct: 251 IAKTAEWAAEICGVGAAKIRELAAIFHQNTTMLMAGWGMQRQQFGEQKHWMIVTLAAMLG 310
Query: 305 H------RFGFIYDMKTIDKSYAEAKFLRTKPEL---------RIPQMELTEAIED---- 345
FG Y + L + +IP + EA+E+
Sbjct: 311 QIGTPGGGFGLSYHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARIVEALENPGGA 370
Query: 346 ----------GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDV 395
++F++ + + NRL +A +K ++ V++ + F T A +D+
Sbjct: 371 YQHNGMNRHFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPELVVIS-ECFWTAAAKHADI 429
Query: 396 VLPANTFFERLDI--VDSYYHRYVL---------------------LNEPVAKG------ 426
VLPA T FER D+ Y +++++ L+E KG
Sbjct: 430 VLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEKGGYARFT 489
Query: 427 PGKSNSE-------VTRLIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGFVKI 479
GKS + V R + ++ P E + + N S ++ F +
Sbjct: 490 EGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFADFCRD 549
Query: 480 PEGERKWNTPSGKIEFYSQRAVKRGLSPFP---------EYKKFKGKYPLRLLS--PTYR 528
P T SGKIE +SQR G P E++ L++LS P +R
Sbjct: 550 PLA-HPLKTASGKIEIFSQRIADYGYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAHPAHR 608
Query: 529 MTVTSQYHNTHGII----DSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVP 584
+ Y + + + ++P DA ERGI+DGD V ++N G+I ++E +
Sbjct: 609 LHSQLNYSSLRELYAVANREPVTIHPDDAQERGIQDGDTVRLWNARGQILAGAVISEGIK 668
Query: 585 PGVVLLYKAFWVKL--------LGWNVNFLTTDKKVEKYGKGSAFHS--TWVE 627
PGV+ +++ W L VN LT D + G G A ++ W+E
Sbjct: 669 PGVICIHEGAWPDLDLTADGICKNGAVNVLTKDLPSSRLGNGCAGNTALAWLE 721
>sp|P20099|BISC_ECOLI BIOTIN SULFOXIDE REDUCTASE 1 (BDS REDUCTASE 1) (BSO REDUCTASE 1)
Length = 777
Score = 129 bits (321), Expect = 1e-28
Identities = 167/713 (23%), Positives = 279/713 (38%), Gaps = 141/713 (19%)
Query: 51 HSKDRLKLPLIKEG--------------DEFNETSWDKAISLVAEKLKEMIKEYGSESVL 96
HS R++ P++++G DEF SWD+A+ L+ ++ K + + YG S+
Sbjct: 52 HSNTRVRFPMVRKGFLASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASIF 111
Query: 97 VYKYAGDRGVVNYYFPMRLFHYLNASTIDGGICDRAGQ---EALKDIYGTAVGVD----- 148
Y V + L Y+ + GG G A + I VG
Sbjct: 112 AGSYGWRSNGVLHKASTLLQRYM---ALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQ 168
Query: 149 ----PEKLKEHKLIVYWGINAFWT-----------NLHGFMFAKRNNLEIWTVDVVRTET 193
P L+ ++V W N T L F + + ++ +D +R+ET
Sbjct: 169 QTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSET 228
Query: 194 AK-RSDKFFQVRP--DTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYV------ 244
DK V P TDV LG+A ++E +DE F+ G+ F +Y+
Sbjct: 229 VDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESDG 288
Query: 245 IKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVG 304
I + + ++ GV +IRE A F + ++ G+G QR G + I L A++G
Sbjct: 289 IAKTAEWAAEICGVGAAKIRELAAIFHQNTTMLMAGWGMQRQQFGEQKHWMIVTLAAMLG 348
Query: 305 H------RFGFIYDMKTIDKSYAEAKFLRTKPEL---------RIPQMELTEAIED---- 345
FG Y + L + +IP + EA+E+
Sbjct: 349 QIGTPGGGFGLSYHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARIVEALENPGGA 408
Query: 346 ----------GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDV 395
++F++ + + NRL +A +K ++ V++ + F T A +D+
Sbjct: 409 YQHNGMNRHFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPELVVIS-ECFWTAAAKHADI 467
Query: 396 VLPANTFFERLDI--VDSYYHRYVL---------------------LNEPVAKG------ 426
VLPA T FER D+ Y +++++ L+E KG
Sbjct: 468 VLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEKGGYARFT 527
Query: 427 PGKSNSE-------VTRLIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGFVKI 479
GKS + V R + ++ P E + + N S ++ F +
Sbjct: 528 EGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFADFCRD 587
Query: 480 PEGERKWNTPSGKIEFYSQRAVKRGLSPFP---------EYKKFKGKYPLRLLS--PTYR 528
P T SGKIE +SQR G P E++ L++LS P +R
Sbjct: 588 PLA-HPLKTASGKIEIFSQRIADYGYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAHPAHR 646
Query: 529 MTVTSQYHNTHGII----DSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVP 584
+ Y + + + ++P DA ERGI+DGD V ++N G+I ++E +
Sbjct: 647 LHSQLNYSSLRELYAVANREPVTIHPDDAQERGIQDGDTVRLWNARGQILAGAVISEGIK 706
Query: 585 PGVVLLYKAFWVKL--------LGWNVNFLTTDKKVEKYGKGSAFHS--TWVE 627
PGV+ +++ W L VN LT D + G G A ++ W+E
Sbjct: 707 PGVICIHEGAWPDLDLTADGICKNGAVNVLTKDLPSSRLGNGCAGNTALAWLE 759
>pir||G82168 trimethylamine-N-oxide reductase VC1692 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656209|gb|AAF94842.1| (AE004247)
trimethylamine-N-oxide reductase [Vibrio cholerae]
Length = 820
Score = 129 bits (320), Expect = 1e-28
Identities = 174/677 (25%), Positives = 273/677 (39%), Gaps = 149/677 (22%)
Query: 65 DEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNAS-- 122
+ F +WD+AI L +L+ + K+YG ++ +AG G + FH A
Sbjct: 111 NRFIRVTWDEAIDLFYRELERVQKQYGPWAL----HAGQTG----WNQTGAFHNCTAMMQ 162
Query: 123 ----------TIDGGICDRAGQEALKDIYGT----AVGVD-PEKLKEHKLIVYW------ 161
T G AGQ + + G+ A G E L I+ W
Sbjct: 163 RAVGMHGNYITKVGDYSTGAGQTIMPYVLGSTEVYAQGTSWSEILDNSDNIILWANDPVK 222
Query: 162 ----GINAFWTNLHGFMFAKRNNLEIWTVDVVRTETAK-RSDKFFQ-----VRPDTDVLF 211
G N G++ + + ++VV + K ++ +F Q + P TDV F
Sbjct: 223 NLQVGWNCETHQSFGYLDQLKEKVAKGEINVVSVDPVKNKTQRFLQNDHLYINPQTDVAF 282
Query: 212 ALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQET-------GVEVEEIR 264
L +A V+ ENLYD+ F+ GFEEF YV+ S + V + GV+ + IR
Sbjct: 283 MLALAHVLYTENLYDKKFIETYCLGFEEFIPYVLGKSKDKVEKTPEWAATICGVKPDAIR 342
Query: 265 EFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH--------RFGFIYDMKTI 316
+FAR + + G+ QR G + A+L A++G +G Y +
Sbjct: 343 DFARMLVNGRTQLLFGWCIQRQEHGEQPYWMGAVLAAMIGQIGLPGGGISYGHHYSGIGV 402
Query: 317 DKS--YAEAKFLRT-----KPEL----------RIPQMELTEAI-EDGR----------- 347
+ F R KP+ IP +AI E G+
Sbjct: 403 PSTGFAGPGGFPRNLDQGAKPKWDNNDFNGYSRTIPVARWIDAILEPGKKINHNGNTVTL 462
Query: 348 --VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFER 405
K + I NP + ++N++++A +K + VVT D T T FSD+VLPA T +ER
Sbjct: 463 PGFKMMVISGCNPWHHHQDRNKMKRAFQKLET-VVTIDFSWTATCRFSDIVLPACTQWER 521
Query: 406 LDIVDSY----------YHRYVLLNEPVAKGPGKSNSEVTRLIAKALGIKNPYLYESDE- 454
DI DSY HR V +P+ + +++ E+ + + G + Y DE
Sbjct: 522 NDI-DSYGSYSGKGLIAMHRLV---DPLFQS--RTDFEIMTELTRRFGREKEYTRGMDEM 575
Query: 455 EVIRKVLEANRIS---------FEELKKKGFVKIPEGERKW---------------NTPS 490
E +R + + + + FEE +KGF+ G W TPS
Sbjct: 576 EWVRSLYDECKKANEGKFAMPEFEEFWEKGFLDFGTGT-PWVRHADFRKDPEINALGTPS 634
Query: 491 GKIEFYSQRAVKRGLSPFPEYKKF------------KGKYPLRLLS--PTYR----MTVT 532
G IE S++ + G E+ + K+P L S P R M
Sbjct: 635 GFIEITSRKIGRYGYEHCQEHPMWFEKTERSHGGPGSDKHPFWLQSCHPDKRLHSQMCEA 694
Query: 533 SQYHNTHGIIDSN-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLY 591
+ T+ + +Y+NP DA +GIKDGD V VFN+ G++ L++ P GV+ +
Sbjct: 695 EAFRATYAVQGREPVYINPLDAKAKGIKDGDLVRVFNDRGQLLAGAVLSDSYPRGVIRIE 754
Query: 592 KAFWVKLLGWNVNFLTT 608
+ W L V + T
Sbjct: 755 EGAWYGPLTEKVGAICT 771
>dbj|BAA74791.1| (AB017192) nitrate reductase catalytic subunit [Clostridium
perfringens]
Length = 692
Score = 129 bits (320), Expect = 1e-28
Identities = 157/649 (24%), Positives = 273/649 (41%), Gaps = 84/649 (12%)
Query: 9 CYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGD-E 66
C C++ +GK+ V P +P+ +GF C KG L + + K PL+K D E
Sbjct: 11 CALACNLDFYTEDGKIKRVVPTPHYPVNKGFSCIKGLNLDKQCTKFNGSKKPLLKMKDGE 70
Query: 67 FNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTI-- 124
W +A L A K+ + ++YG ESV Y G M L ++ S +
Sbjct: 71 RKAIEWKEAFDLFASKMTAIQEKYGKESV-AYISTGQLPTEE----MALLGHVGRSYMGI 125
Query: 125 --DGG--ICDRAGQEALKDIYGTAVGVDPEKLKEHKL---IVYWGINAFWTNLHGFMFAK 177
DG +C + A K +G P LK+ +L I + G N + + +
Sbjct: 126 NGDGNTRLCMASAVVAYKQSFG--FDAPPYTLKDLELSDTIFFIGANPVIAHPIAWGRVR 183
Query: 178 RN-NLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYG 236
+N + +I T+D ++ETA SD + ++ D+ +A V+IE+ ++D++ G
Sbjct: 184 KNKDAKIITIDPRKSETAMNSDMWIDIKTKGDLALFYTLANVLIEKGWINQDYINNYTEG 243
Query: 237 FEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGI-IHIGYGFQRSLAGGEAVRA 295
FE+FK +V K +L V + TG+ + E A+ E K + G +S +A
Sbjct: 244 FEDFKAHVKKYTLEDVEERTGISKMRVLELAKIIHEGKRVSFWWTMGVNQSYEAVRTAQA 303
Query: 296 IAILPALVGHR-----------------------------FGFIYDMKTIDKSYA----- 321
I L + G+ G Y+ K K A
Sbjct: 304 IINLALITGNMGREGTGANSLTGQCNAMGSRMFSNTTALYGGGEYNNKERRKVVADILGM 363
Query: 322 EAKFLRTKPELRIPQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVT 381
+ L TKP L Q + + I G +K L++ +NP S+ N +KA++ D FVV
Sbjct: 364 DENMLPTKPTLDYEQ--IIKGINKGEIKGLWVVCTNPRHSFSNNEEFKKAMKNLDFFVVQ 421
Query: 382 HDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGK-SNSEVTRLIAK 440
TD++ D+ LP+ ++ + + R L + K + S+ E+ I +
Sbjct: 422 DIYEDTDSSKECDLYLPSVPAIKKEGFLINTERRLSALVPVLEKEEDELSDYEILLGIGE 481
Query: 441 ALGIKNPY-LYESDEEVIRKVLEANR--------ISFEELKKKGFVKIP--EGER----- 484
ALG+ + + + E+ + + E ++ +S+E L+ ++ P +GE
Sbjct: 482 ALGMGSLLDKWRTPEDAFKLLRECSKGMPCDITGVSYERLRDSKGIQWPCRKGEELESDE 541
Query: 485 -------KWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPLRLLSPTYRMTVTSQYHN 537
K+ TPSGK +F + + + E+ F + + T T +
Sbjct: 542 RRLFEDGKYYTPSGKAKFIFEDVTENPNATNEEF-PFNLNTGRGTVGQWHTHTRTREIQA 600
Query: 538 THGIIDSNLY--MNPKDAAERGIKDGDEVIVFNENGKIKTKI-KLTEDV 583
I+ Y +N KDA + IK+ DEV++ + NG I +LT+++
Sbjct: 601 VTNIVSQKAYVDINRKDAEKLDIKENDEVLIHSSNGHTSKFIARLTDNL 649
>gb|AAB94932.1| (AF039208) putative formate dehydrogenase alpha subunit
[Thermococcus litoralis]
Length = 637
Score = 128 bits (319), Expect = 2e-28
Identities = 151/599 (25%), Positives = 258/599 (42%), Gaps = 65/599 (10%)
Query: 33 PITRGFLCPKGALLPRWFHSKDRLKLPLIK-EGDEFNETSWDKAISLVAEKLKEMIKEYG 91
P RG LCPKG + + SK+RLK PL E +F + SW +AI+ +A ++ +K+
Sbjct: 36 PNDRGKLCPKGNAMFEYLLSKERLKTPLKAIERGKFVKISWKEAINEIASFIRGYMKD-- 93
Query: 92 SESVLVYKYAGDRGVVNYYFPMRLFHYLNASTIDGG--ICDRAGQEALKDIYGTAVGVDP 149
+ L++ G + Y +L + + +D +C A+ D
Sbjct: 94 DPNRLMFIAGGKVSNESAYLFQKLARNIGTNNVDNTSHLCHGVSVRAILDANFERNWATY 153
Query: 150 EKLKEHKLIVYWGINAFWTN---LHGFMFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPD 206
+ ++E +I+ WG N T + AK + +I +D +T+T K + + P
Sbjct: 154 DDIEESNVIILWGANLAETAPLIFRRVLKAKNRSAKIIVIDPRKTKTTKFASIHVRPFPG 213
Query: 207 TDVLFALGVAKVMIEE-NLYDEDFVRENVYGFEEFKNYVIKLSLNYVSQETGVEVEEIRE 265
TD++ + ++++ N+ F ++ + K + Y + TGV V +I E
Sbjct: 214 TDIVLINALINLLLKRRNIKSAHFKASDL-------EIISKNTPEYAERITGVPVRDIEE 266
Query: 266 FAREFA-EKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGHRF----------------- 307
ARE ++GII G G G + +R+I L ++V +
Sbjct: 267 IAREIGLARRGIILWGSGIAMHSNGYDVIRSIITLASIVDFKVLPLAGQNNSQGVMDMGV 326
Query: 308 --GFIYDMKTIDKSYA-----EAKFLRTKPELRIPQMELTEAIEDGRVKFLYIYNSNPLA 360
F+ +T D Y + + L T+ L IP+ + EA + V Y+ +N
Sbjct: 327 VPNFLPGYRTYDNVYIFREAWKNEELPTEVGLDIPK-SIKEA-QKRNVSAFYVMGANIAL 384
Query: 361 SYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYVLLN 420
S+P KALR+ + FV+ DIF T T +D+VLPA F E + R + +
Sbjct: 385 SFPEAE---KALRRAE-FVIVQDIFPTQTTELADIVLPAAAFLESNGSTTNAERR-IQWS 439
Query: 421 EPVAKGPGKSNSEVTRL--IAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGFVK 478
V PG + + L + ALG++ Y EE++R++ + + ++
Sbjct: 440 SRVKWPPGDAKPDWAILCELGNALGLRGFDFY-FPEEILREISTLVP-QYANANPRTLMR 497
Query: 479 IPEGERKWNT--PSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPLRLLSPTYRMTVTSQYH 536
PEG WN S + Y + P ++ G++ T MT S
Sbjct: 498 TPEGVM-WNIVPDSQPTKVYVSNKMPLLEPPVMITVRYVGQFQ------TGTMTKRSPPL 550
Query: 537 NTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFW 595
N D + ++ +DA + GIKDGD V + +ENGK +K+++ V PG + KA W
Sbjct: 551 NIRWQ-DLLILVSEEDAQKWGIKDGDRVKLVSENGKYIGTVKVSKTVIPGTI---KAPW 605
>sp|P37600|PHSA_SALTY THIOSULFATE REDUCTASE PRECURSOR >gi|2126173|pir||A57143
thiosulfate--dithiol sulfurtransferase (EC 2.8.1.5) phsA
chain - Salmonella typhimurium >gi|755676|gb|AAC36934.1|
(L32188) thiosulfate reductase [Salmonella typhimurium]
Length = 758
Score = 128 bits (319), Expect = 2e-28
Identities = 155/686 (22%), Positives = 279/686 (40%), Gaps = 115/686 (16%)
Query: 9 CYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGD-- 65
C C I ++ N K + ++GNP P +C +G + R+ P+ + G
Sbjct: 51 CSFRCPIQAQVVNNKTVFIQGNPSAPQQGTRICARGGSGVSLVNDPQRIVKPMKRTGPRG 110
Query: 66 --EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNA-- 121
E+ SW +A +A K+ + ++G ESV +G LFH A
Sbjct: 111 DGEWQVISWQQAYQEIAAKMNAIKAQHGPESVAFSSKSGS-------LSSHLFHLATAFG 163
Query: 122 ---STIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFW----TNLHGFM 174
+ C A K + G + +D + + +V +G N + + H M
Sbjct: 164 SPNTFTHASTCPAGKAIAAKVMMGGDLAMD---IANTRYLVSFGHNLYEGIEVADTHELM 220
Query: 175 FAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENV 234
A+ ++ + D + + ++D++ +RP D+ L + VMI+E LYD FV
Sbjct: 221 TAQEKGAKMVSFDPRLSIFSSKADEWHAIRPGGDLAVLLAMCHVMIDEQLYDASFVERYT 280
Query: 235 YGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFA--EKKGIIHIGYGFQRSLAGGEA 292
GFE+ V + + + + + V + I RE A I+ G+ S +
Sbjct: 281 SGFEQLAQAVKETTPEWAAAQADVPADVIVRVTRELAACAPHAIVSPGHRATFSQEEIDM 340
Query: 293 VRAIAILPALVGH--RFGFIYDMK--TIDKSYAEAKFLRTKPELRIPQME---------- 338
R I L L+G+ R G +Y K ++ A K T +L I M
Sbjct: 341 RRMIFTLNVLLGNIEREGGLYQKKNASVYNKLAGEKVAPTLAKLNIKNMPKPTAQRIDLV 400
Query: 339 ------------LTEAIEDGR-------VKFLYIYNSNPLASYPNQNRLRKALRKNDIFV 379
+ ++I D +K + NP + ++ L K + + D+ V
Sbjct: 401 APQFKYIAAGGGVVQSIIDSALTQKPYPIKAWIMSRHNPFQTVTCRSDLVKTVEQLDL-V 459
Query: 380 VTHDIFLTDTALFSDVVLPANTFFERLDIVD--SYYHRYVLLNEPVAK--GPGKSNSEVT 435
V+ D++L+++A ++D +LP T+ ER + V S H L + V + G + + ++
Sbjct: 460 VSCDVYLSESAAYADYLLPECTYLERDEEVSDMSGLHPAYALRQQVVEPIGEARPSWQIW 519
Query: 436 RLIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGF--------VKIPEGER--- 484
+ + + LG+ Y ++ + L + +EL++KG+ ++ PE R
Sbjct: 520 KELGEQLGLGQYYPWQDMQTRQLYQLNGDHALAKELRQKGYLEWGVPLLLREPESVRQFT 579
Query: 485 -------------------KWNTPSGKIEFYSQRAVKRGLSP---FPEYKKF-------- 514
++ +PSGKIE YS A L P P + F
Sbjct: 580 ARYPGAIATDSDNTYGEQLRFKSPSGKIELYS--ATLEELLPGYGVPRVRDFALKKENEL 637
Query: 515 ---KGKYPLRLLSPTYRMTVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVIVFNENG 571
+GK + T + + S+ + D+ ++++P+ A E+GIK GDE+ + N G
Sbjct: 638 YFIQGKVAVHTNGATQYVPLLSEL-----MWDNAVWVHPQTAQEKGIKTGDEIWLENATG 692
Query: 572 KIKTKIKLTEDVPPGVVLLYKAFWVK 597
K K K +T + P + +Y F K
Sbjct: 693 KEKGKALVTPGIRPDTLFVYMGFGAK 718
>pir||G81444 molybdopterin-containing oxidoreductase Cj0264c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967741|emb|CAB72732.1| (AL139074)
molybdopterin-containing oxidoreductase [Campylobacter
jejuni]
Length = 838
Score = 128 bits (318), Expect = 2e-28
Identities = 165/713 (23%), Positives = 282/713 (39%), Gaps = 146/713 (20%)
Query: 59 PLIKEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHY 118
P ++ DEF S+D+AI L+A++LK+ G+ ++ Y + L +
Sbjct: 109 PELRGKDEFVRVSYDEAIKLIAKELKKTRDSKGASAIFGGSYGWKSSGNMQNSRILLHRF 168
Query: 119 LNAST----IDGGICDRAGQEALKDIYGTAVGVDPEK-----LKEHKLIVYWGINAF--- 166
LN + G A Q + + G+ + + L + K +V WG +
Sbjct: 169 LNVTGGFVGATGDYSTGASQVIMPYVVGSIEVYEQQTSWENILSDSKYVVIWGADPLSTL 228
Query: 167 ---WTN-----LHGFMFAKRNNLEIWTVDVVRTETAK-RSDKFFQVRPDTDVLFALGVAK 217
WT+ L F K + +++ +D V+T TAK + K+ RP+TDV +G+A
Sbjct: 229 RIAWTSNEQRGLAYFEKLKDSKIKVICIDPVKTTTAKFLNAKWIAPRPNTDVALMMGMAS 288
Query: 218 VMIEENLYDEDFVRENVYGFEEFKNYV------IKLSLNYVSQETGVEVEEIREFAREFA 271
+I + + +F+ GF++FK+Y+ +K + S+ G++ + I+ A F
Sbjct: 289 HLIAKKKVNYEFLDTYTTGFDKFKDYLEGKEDGVKKDTKWASKICGIDEKTIKNLAETFY 348
Query: 272 EKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH------RFGFIY-------------- 311
+ +I G+G QR+ G + + L A++G FG Y
Sbjct: 349 DNSTMIMSGWGMQRAHHGEQPHWMLVTLCAMLGQIGTKGGGFGLSYHYSNGGVPTCKGGV 408
Query: 312 ---------------DMKTIDKSYAE---AKFLRTKPELRIPQMELTEA-IEDGR----- 347
K + K+ A A++L+ P + +A + G+
Sbjct: 409 IGGMTAGSLGIWKNGKFKGLSKAEASSEGAEWLQNAASYSFPVARIADALLHPGKTIDHN 468
Query: 348 --------VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPA 399
+ F+Y NPL + N N KA RK VV ++I+ T TA +D+V+P
Sbjct: 469 GAKITYPDIDFIYWVGGNPLVHHQNTNTNVKAWRKPRT-VVVNEIYWTPTAKMADIVMPV 527
Query: 400 NTFFERLDI--VDSYYHRYVLLNEPVAKGPGKSN------SEVTRLIAKALGIKNPYLYE 451
+ +ER DI Y + ++ + + G+S S++ ++ K + N Y
Sbjct: 528 TSSYERDDITMTGDYSNMHIAPMKQAVEPVGESKDDYVIFSDICKIYGK--DVFNAYTEN 585
Query: 452 SD------EEVIRKVLEANRI----------SFEEL--KKKGFVKIPEGER-KW------ 486
+E L+ + SFEE K + P E +W
Sbjct: 586 GKKAKDFIKEYYNSALKQTQSFGEAFATPMPSFEEFWAKNEPITFEPTAESLEWTRFSEF 645
Query: 487 ---------NTPSGKIEFYSQ----------RAVKRGLSPFPEYKKFKGKYPLRLLSPTY 527
T SG IE YS+ +A P + P LL+
Sbjct: 646 IEDPILNALGTDSGLIEIYSETIKNYNYDDCKAHPTWFEPIEWLGNASKEAPFHLLTNHP 705
Query: 528 RMTVTSQ-----YHNTHGIIDSN-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTE 581
R + SQ +T+ I D + +N KDA + GIK+GD V VFN+ G++ +++
Sbjct: 706 RDRLHSQLCHTSLRDTYAIKDREPILINSKDAKKLGIKNGDVVRVFNKRGEVLAGAVVSD 765
Query: 582 DVPPGVVLLYKAFWVK------LLGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
++ GVV L + W N N LT D K G+ H+ V +
Sbjct: 766 EIMQGVVRLCEGAWYDPNENGLCKCGNANVLTMDIPTSKLANGNISHTGLVNI 818
>pir||H82137 biotin sulfoxide reductase VC1950 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656488|gb|AAF95098.1|
(AE004270) biotin sulfoxide reductase [Vibrio cholerae]
Length = 815
Score = 127 bits (316), Expect = 4e-28
Identities = 161/763 (21%), Positives = 300/763 (39%), Gaps = 146/763 (19%)
Query: 15 IISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEG---------- 64
++ E ++GK++ N L G P +++ R+K P++++G
Sbjct: 49 LLCEVQDGKMVATKNALAQTVPNSLQSTG---PDQVYTQARVKYPMVRKGFLANPAAPKG 105
Query: 65 ----DEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLN 120
DEF SWD A L+ E+ + K YG SV Y V + L Y++
Sbjct: 106 VRGSDEFVRVSWDDAYRLIHEQHMRIRKTYGPASVFAGSYGWRSSGVLHKAQTLLQRYMS 165
Query: 121 -ASTIDGGICDR---AGQEALKDIYGTAVGVD-----PEKLKEHKLIVYWGINAF----- 166
A G + D A Q + + G+ + P L+ ++V WG+N
Sbjct: 166 MAGGYSGHLGDYSTGAAQIIMPHVVGSIEVYEQQTTYPVVLEHSDVVVLWGLNPINTLKI 225
Query: 167 -WTN-----LHGFMFAKRNNLEIWTVDVVRTETAK---RSDKFFQVRPDTDVLFALGVAK 217
W++ L F K++ I +D +R+ET + ++ P TDV +G+A
Sbjct: 226 AWSSTDCAGLEFFHQLKKSGKTIIGIDPIRSETIEFFGEQAQWIAPHPMTDVAMMMGIAH 285
Query: 218 VMIEENLYDEDFVRENVYGFEEFKNYV------IKLSLNYVSQETGVEVEEIREFAREFA 271
+I++ +D+ F+ + G++ F+ Y+ ++ S + GV +++ A F+
Sbjct: 286 SLIKQGKHDKAFLDKYTVGYDRFEAYLLGKEDGVEKSAQWAEGICGVPAKQLETLAEIFS 345
Query: 272 EKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH------RFGFIYDMKTIDKSYAEAKF 325
+ ++ G+G QR G + + L A++G FGF Y +A
Sbjct: 346 NHRTMLMAGWGMQRQQYGEQRHWMVVTLAAMLGQIGLPGGGFGFSYHYSNGGNPARDAGV 405
Query: 326 LR------------------TKPELRIPQMELTEAIED--------------GRVKFLYI 353
L + P + EA+E+ +K ++
Sbjct: 406 LPAISAAIGGGSSAGNDWAISGATQSFPVARIVEALENPGGAYQHNGHTLTFPEIKMIWW 465
Query: 354 YNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDI--VDS 411
+ + NRL KA +K ++ V++ + + T A +D+VLP T FER D+
Sbjct: 466 AGGANFTHHQDTNRLIKAWQKPELIVIS-EPYWTAAAKHADIVLPITTTFERNDLTMTGD 524
Query: 412 YYHRYVLLNEPVAKGPGKSNSEVTRLIAKALGIK---NPYLYESDEEV------IRKVLE 462
Y +++++ + V + G++ ++ A I+ E E+ + +
Sbjct: 525 YSNQHLVPMKQVVEPQGEARNDFDVFADMAEMIRPGGRDVFTEGKTEMEWLYGFYKTAQK 584
Query: 463 ANRISFEELKKKGFVKIPEG----ERKWN----------------------TPSGKIEFY 496
+ R + + F K E E KWN TPSGKIE Y
Sbjct: 585 SGRAA--RVAMPNFSKFWEDNQLIEMKWNAKNAQFVRYADFRADPILNPLGTPSGKIEIY 642
Query: 497 SQRAVKRGLSPFPEYKKF-----------KGKYPLRLLSPTYRMTVT---SQYHNTHGII 542
S+ L P + + +G+ L +R+ +Q + I
Sbjct: 643 SKTLAGFNLPDCPAHPTWLAPDEFTGNAKQGELQLMTAHAAHRLHSQFNYAQLREEYAIA 702
Query: 543 DSN-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLLYKAFWVKL--- 598
+ ++++P+DAA RGI+ GD V +N+ G++ +T+ + G V +++ W L
Sbjct: 703 NREPIWIHPEDAASRGIQTGDLVRAYNQRGQVLVGALVTDRIKQGSVCIHEGGWPDLDPQ 762
Query: 599 ----LGWNVNFLTTDKKVEKYGKGSAFHSTWVEVIRCGEPGVK 637
N LT+D + G A +S+ V + + P ++
Sbjct: 763 TGLCKNGGANVLTSDIPTSRLANGCAANSSLVRIEKYTGPALE 805
>sp|P33225|TORA_ECOLI TRIMETHYLAMINE-N-OXIDE REDUCTASE PRECURSOR (TMAO REDUCTASE)
(TRIMETHYLAMINE OXIDASE) >gi|7447430|pir||C64841
trimethylamine-N-oxide reductase (EC 1.6.6.9) precursor
- Escherichia coli >gi|1651489|dbj|BAA36139.1| (D90736)
Trimethylamine-n-oxide reductase precursor (EC 1.6.6.9)
(tmaO reductase) (trimethylamine oxidase). [Escherichia
coli] >gi|1651495|dbj|BAA35764.1| (D90737)
Trimethylamine-n-oxide reductase precursor (EC 1.6.6.9)
(tmaO reductase) (trimethylamine oxidase). [Escherichia
coli] >gi|1787231|gb|AAC74082.1| (AE000201)
trimethylamine N-oxide reductase subunit [Escherichia
coli K12]
Length = 848
Score = 127 bits (315), Expect = 5e-28
Identities = 173/733 (23%), Positives = 289/733 (38%), Gaps = 157/733 (21%)
Query: 46 LPRWFHSKDRLKLPLIK--------------EGDE-FNETSWDKAISLVAEKLKEMIKEY 90
LP H+ R++ P+++ GD F SWD+A+ + E+L+ + K +
Sbjct: 90 LPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTH 149
Query: 91 GSESVLVYKYAGDRGVVNYYFPM---RLFHYLNASTIDGGICDRAGQEALKDIYGTAVGV 147
G ++L G+ + M + + N+ G A Q L + G+
Sbjct: 150 GPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVY 209
Query: 148 D-----PEKLKEHKLIVYWGINA-------FWTNLHGF------MFAK--RNNLEIWTVD 187
+ P L+ K IV WG + +W H + AK +E+ ++D
Sbjct: 210 EQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISID 269
Query: 188 VVRTET----AKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNY 243
V T T + K V P TDV L +A + ENLYD++F+ GFE+F Y
Sbjct: 270 PVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPY 329
Query: 244 VI------KLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIA 297
++ + + TG++ E IR AR+ A + I G+ QR G + I
Sbjct: 330 LLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIV 389
Query: 298 ILPALVGH------RFGFIYDMKTIDKSYAEAKFL------RTKPELR-----------I 334
+L A++G FGF + + L + P + I
Sbjct: 390 VLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTI 449
Query: 335 PQMELTEAI-EDGRV-------------KFLYIYNSNPLASYPNQNRLRKALRKNDIFVV 380
P +AI E G+V K +NP + NR+ + LRK + V+
Sbjct: 450 PIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGLRKLET-VI 508
Query: 381 THDIFLTDTALFSDVVLPANTFFER--LDIVDSYYHRYVLLNEPVA--KGPGKSNSEVTR 436
D T T F+D+VLPA T FER LD ++ +R ++ + V + +++ ++ R
Sbjct: 509 AIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFR 568
Query: 437 LIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGFVKIPEGERKWN--------- 487
+ + + + DE K + + ++ K +G V +P + WN
Sbjct: 569 ELCRRFNREEAFTEGLDEMGWLKRIWQEGV--QQGKGRG-VHLPAFDDFWNNKEYVEFDH 625
Query: 488 --------------------TPSGKIEFYSQRAVKRGLSP-------FPEYKKFKG---- 516
TPSG IE YS+ F + ++ G
Sbjct: 626 PQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGS 685
Query: 517 -KYPLRLLS--PTYRM--------TVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVI 565
KYPL L S P +R+ T+ QY +++NP+DA+ RGI++GD V
Sbjct: 686 QKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAG---KEPVFINPQDASARGIRNGDVVR 742
Query: 566 VFNENGKIKTKIKLTEDVPPGVVLLYKAFW----------VKLLGWNVNFLTTDKKVEKY 615
VFN G++ +++ PGV +++ W N N LT D +
Sbjct: 743 VFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQL 802
Query: 616 GKGSAFHSTWVEV 628
+ ++ H+T VE+
Sbjct: 803 AQATSAHTTLVEI 815
>pir||S34222 trimethylamine-N-oxide reductase (EC 1.6.6.9) - Escherichia coli
>gi|806336|emb|CAA52095.1| (X73888)
trimethylamine-N-oxide reductase [Escherichia coli]
Length = 848
Score = 126 bits (314), Expect = 6e-28
Identities = 174/730 (23%), Positives = 290/730 (38%), Gaps = 151/730 (20%)
Query: 46 LPRWFHSKDRLKLPLIK--------------EGDE-FNETSWDKAISLVAEKLKEMIKEY 90
LP H+ R++ P+++ GD F SWD+A+ + E+L+ + K +
Sbjct: 90 LPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTH 149
Query: 91 GSESVLVYKYAGDRGVVNYYFPMR---LFHYLNASTIDGGICDRAGQEALKDIYGTAVGV 147
G ++L G+ + MR + + N+ G A Q L + G+
Sbjct: 150 GPSALLTASGWQSTGMFHNASGMRAKRIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVY 209
Query: 148 D-----PEKLKEHKLIVYWGINA-------FWTNLHG----FMFAKRNN----LEIWTVD 187
+ P L+ K IV WG + +W H + KR + +E+ ++D
Sbjct: 210 EQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKRKSAAGEIEVISID 269
Query: 188 VVRTETAK----RSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNY 243
V T T + K V P TDV L +A + ENLYD++F+ GFEEF Y
Sbjct: 270 PVVTSTHEYLGGEHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEEFLPY 329
Query: 244 VI------KLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIA 297
++ + + +G++ E IR AR+ A + I G+ QR G + I
Sbjct: 330 LLGEKDGQPKDAAWAEKLSGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIV 389
Query: 298 ILPALVGH------RFGFIYDMKTIDKSYAEAKFL------RTKPELR-----------I 334
+L A++G FGF + + L + P + I
Sbjct: 390 VLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTI 449
Query: 335 PQMELTEAI-EDGRV-------------KFLYIYNSNPLASYPNQNRLRKALRKNDIFVV 380
P +AI E G+V K +NP + NR+ + LR N V+
Sbjct: 450 PIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGLR-NVETVI 508
Query: 381 THDIFLTDTALFSDVVLPANTFFER--LDIVDSYYHRYVLLNEPVA--KGPGKSNSEVTR 436
D T T F+D+VLPA T FER LD ++ +R ++ + V + +++ ++ R
Sbjct: 509 AIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFR 568
Query: 437 LIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGFVKIPEGERKWN--------- 487
+ + + + DE K + + ++ K +G V +P + WN
Sbjct: 569 ELCRRFNREEAFTEGLDEMGWLKRIWQEGV--QQGKGRG-VHLPAFDDFWNNKEYVEFDH 625
Query: 488 --------------------TPSGKIEFYSQRAVKRGLSP-------FPEYKKFKG---- 516
TPSG IE YS+ F + ++ G
Sbjct: 626 PQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGS 685
Query: 517 -KYPLRLLS--PTYRM-----TVTSQYHNTHGIIDSNLYMNPKDAAERGIKDGDEVIVFN 568
KYPL L S P +R+ + H +++NP+DA+ RGI++GD V VFN
Sbjct: 686 QKYPLHLQSVHPDFRLHSQLCESETLRHEYTVAGKEPVFINPQDASARGIRNGDVVRVFN 745
Query: 569 ENGKIKTKIKLTEDVPPGVVLLYKAFWVK-----LLG-----WNVNFLTTDKKVEKYGKG 618
G++ +++ PGV +++ W LG N N LT D + +
Sbjct: 746 ARGQVMAGAVVSDRYAPGVARIHEGAWYDPDKGGELGALCKYGNPNVLTIDIGTSQLAQA 805
Query: 619 SAFHSTWVEV 628
++ H+T VE+
Sbjct: 806 TSAHTTLVEI 815
>pir||H64949 biotin sulfoxide reductase (EC 1.-.-.-) 2 - Escherichia coli
>gi|1788180|gb|AAC74942.1| (AE000281) biotin sulfoxide
reductase 2 [Escherichia coli K12]
Length = 815
Score = 122 bits (304), Expect = 1e-26
Identities = 159/714 (22%), Positives = 290/714 (40%), Gaps = 140/714 (19%)
Query: 51 HSKDRLKLPLIKEG--------------DEFNETSWDKAISLVAEKLKEMIKEYGSESVL 96
H+ R++ P++++ D + + SW++A+ L+ E+ + K G ++
Sbjct: 86 HTTARIQHPMVRKSYLDNPLQPAKGRGEDTYVQVSWEQALKLIHEQHDRIRKANGPSAIF 145
Query: 97 VYKYAGDRGVVNYYFPMRLFHYLNA----STIDGGICDRAGQEALKDIYGTAVGVD---- 148
Y V + L Y+N S G A Q + + G+ +
Sbjct: 146 AGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGDYSTGAAQVIMPHVVGSVEVYEQQTS 205
Query: 149 -PEKLKEHKLIVYWGINAF------WTN-----LHGFMFAKRNNLEIWTVDVVRTETAKR 196
P L+ +++V WG+N W++ L F K++ + +D +R+ET +
Sbjct: 206 WPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEF 265
Query: 197 -SDKFFQVRPD--TDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLN--- 250
D + P+ TDV LG+A ++ + +D+ F+ + G+ +F+ Y+ S N
Sbjct: 266 FDDNATWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLTGKSDNTPK 325
Query: 251 ---YVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH-- 305
+ ++ TGV +I + A A + ++ G+G QR G + + L A++G
Sbjct: 326 SAVWAAEITGVPEAQIVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIG 385
Query: 306 ----RFGFIYDMKTIDKSYAEAKFLRTKPELR------------------IPQMELTEAI 343
FGF Y L PE+ IP + +A+
Sbjct: 386 TPGGGFGFSYHYSNGGNPTRVGGVL---PEMSAAIAGHASEAADDGGMTAIPVARIVDAL 442
Query: 344 EDG--------------RVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDT 389
E+ +K ++ + + NRL KA +K ++ VV+ + + T
Sbjct: 443 ENPGGKYQHNGKEQTYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVS-ECYWTAA 501
Query: 390 ALFSDVVLPANTFFERLDIV--DSYYHRYVL-LNEPVA-KGPGKSNSEVTRLIAKAL--G 443
A +D+VLP T FER D+ Y +++++ + + VA + +++ +V +A+ L G
Sbjct: 502 AKHADIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPG 561
Query: 444 IKNPYLYESDE--------EVIRKVLEANRISF---------------------EELKKK 474
K Y DE + +K A R++ E+ +
Sbjct: 562 GKEIYTEGKDEMAWLKFFYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRHSEKNEQYVRY 621
Query: 475 GFVKIPEGERKWNTPSGKIEFYSQRAVKRGLSPFP---------EYKKFKGKYPLRLLS- 524
G + + TPSGKIE YS+ K G P E+K + L+LL+
Sbjct: 622 GDFRADPVKNALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLTA 681
Query: 525 -PTYRMTVTSQY---HNTHGIIDSN-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKL 579
P +R+ Y + I D + ++ +DAA GI +GD V V+N+ G+I T +
Sbjct: 682 HPAHRLHSQLNYAELRKKYAIADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVV 741
Query: 580 TEDVPPGVVLLYKAFWVKL-----LGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
T+ + GVV +++ W L + N LT D + A +S V +
Sbjct: 742 TDGIKKGVVCVHEGAWPDLENGLCKNGSANVLTADIPSSQLANACAGNSALVYI 795
>sp|P46923|BISZ_ECOLI BIOTIN SULFOXIDE REDUCTASE 2 (BDS REDUCTASE 2) (BSO REDUCTASE 2)
>gi|1736518|dbj|BAA15682.1| (D90829) Biotin sulfoxide
reductase 2 (EC 1.-.-.-) (BDS reductase 2) (BSO
reductase 2). [Escherichia coli]
Length = 809
Score = 122 bits (304), Expect = 1e-26
Identities = 159/714 (22%), Positives = 290/714 (40%), Gaps = 140/714 (19%)
Query: 51 HSKDRLKLPLIKEG--------------DEFNETSWDKAISLVAEKLKEMIKEYGSESVL 96
H+ R++ P++++ D + + SW++A+ L+ E+ + K G ++
Sbjct: 80 HTTARIQHPMVRKSYLDNPLQPAKGRGEDTYVQVSWEQALKLIHEQHDRIRKANGPSAIF 139
Query: 97 VYKYAGDRGVVNYYFPMRLFHYLNA----STIDGGICDRAGQEALKDIYGTAVGVD---- 148
Y V + L Y+N S G A Q + + G+ +
Sbjct: 140 AGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGDYSTGAAQVIMPHVVGSVEVYEQQTS 199
Query: 149 -PEKLKEHKLIVYWGINAF------WTN-----LHGFMFAKRNNLEIWTVDVVRTETAKR 196
P L+ +++V WG+N W++ L F K++ + +D +R+ET +
Sbjct: 200 WPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEF 259
Query: 197 -SDKFFQVRPD--TDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLN--- 250
D + P+ TDV LG+A ++ + +D+ F+ + G+ +F+ Y+ S N
Sbjct: 260 FDDNATWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLTGKSDNTPK 319
Query: 251 ---YVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH-- 305
+ ++ TGV +I + A A + ++ G+G QR G + + L A++G
Sbjct: 320 SAVWAAEITGVPEAQIVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIG 379
Query: 306 ----RFGFIYDMKTIDKSYAEAKFLRTKPELR------------------IPQMELTEAI 343
FGF Y L PE+ IP + +A+
Sbjct: 380 TPGGGFGFSYHYSNGGNPTRVGGVL---PEMSAAIAGHASEAADDGGMTAIPVARIVDAL 436
Query: 344 EDG--------------RVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDT 389
E+ +K ++ + + NRL KA +K ++ VV+ + + T
Sbjct: 437 ENPGGKYQHNGKEQTYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVS-ECYWTAA 495
Query: 390 ALFSDVVLPANTFFERLDIV--DSYYHRYVL-LNEPVA-KGPGKSNSEVTRLIAKAL--G 443
A +D+VLP T FER D+ Y +++++ + + VA + +++ +V +A+ L G
Sbjct: 496 AKHADIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPG 555
Query: 444 IKNPYLYESDE--------EVIRKVLEANRISF---------------------EELKKK 474
K Y DE + +K A R++ E+ +
Sbjct: 556 GKEIYTEGKDEMAWLKFFYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRHSEKNEQYVRY 615
Query: 475 GFVKIPEGERKWNTPSGKIEFYSQRAVKRGLSPFP---------EYKKFKGKYPLRLLS- 524
G + + TPSGKIE YS+ K G P E+K + L+LL+
Sbjct: 616 GDFRADPVKNALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLTA 675
Query: 525 -PTYRMTVTSQY---HNTHGIIDSN-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKL 579
P +R+ Y + I D + ++ +DAA GI +GD V V+N+ G+I T +
Sbjct: 676 HPAHRLHSQLNYAELRKKYAIADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVV 735
Query: 580 TEDVPPGVVLLYKAFWVKL-----LGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
T+ + GVV +++ W L + N LT D + A +S V +
Sbjct: 736 TDGIKKGVVCVHEGAWPDLENGLCKNGSANVLTADIPSSQLANACAGNSALVYI 789
>sp|P73448|NARB_SYNY3 NITRATE REDUCTASE >gi|7431434|pir||S77385 nitrate reductase (EC
1.7.99.4) chain A narB - Synechocystis sp. (strain PCC
6803) >gi|1652567|dbj|BAA17488.1| (D90906) nitrate
reductase [Synechocystis sp.]
Length = 714
Score = 122 bits (303), Expect = 1e-26
Identities = 143/648 (22%), Positives = 272/648 (41%), Gaps = 99/648 (15%)
Query: 26 VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEG--DEFNETSWDKAISLVAEKL 83
++G+ +HP ++G +C KGA + K RL P+ + + + SW+ A+ +V +K+
Sbjct: 42 IRGDRQHPSSQGMVCVKGATVMESM-DKQRLLYPMFRSSLDQPWQQISWEAALEIVVDKI 100
Query: 84 KEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLNASTIDGGICDRAGQEALKDIYG 142
+++ + G + +Y +G +YY +LF L + D R + Y
Sbjct: 101 QQVKQTLGVSGLCMYA-SGQMQTEDYYVAQKLFKGCLGTNNFDTN--SRLCMSSAVSAYS 157
Query: 143 TAVGVDP-----EKLKEHKLIVYWGINAFWTNLHGFMFA------KRN-NLEIWTVDVVR 190
+ G D E L+ G N + H +F K+N ++++ VD
Sbjct: 158 LSFGSDGPPCCYEDLEITDCAFLIGTNT--ADCHPIIFNRLRKHHKQNPHVKLIVVDPRC 215
Query: 191 TETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLN 250
T TA+ +D + P +D+ G+A ++ + NL D+ F+ + FE++ +
Sbjct: 216 TATAEVADLHLAINPGSDITLLHGIAYLLKKWNLIDQKFIDNHTQDFEQYCQVIDHYPPE 275
Query: 251 YVSQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEAVRAIAILPALVG----- 304
V+Q G+ +E++ A + K ++ + G +S G R + L L G
Sbjct: 276 KVTQICGISLEQLETAAHYWGNAKTVLSLWSMGMNQSFQGTAKGRCLINLHLLTGQIGKP 335
Query: 305 -----------------------HRFGFIYDMKTIDKSYAEAKFL------RTKPELRIP 335
H +K + E + L R PE +
Sbjct: 336 GSGPFSLTGQPNAMGGREAGGLSHLLPGYRSIKN-PQHRQEVEQLWQISPGRINPEPGLS 394
Query: 336 QMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFL-TDTALFSD 394
E+ +E+ +V FL+I +NP+ S P+ R++KAL+++ F + D + T+TA ++
Sbjct: 395 AWEMFMGLENQQVGFLWIVATNPVVSMPDLERVKKALQQS-TFTIHQDAYSPTETAEYAH 453
Query: 395 VVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNS--EVTRLIAKALGIKNPYLYES 452
++LPA + E+ + + R V L+ PG++ E+ + + LG +N + +
Sbjct: 454 LLLPAAQWSEKTGTMTN-SERRVTLSPAFRSPPGEARPDWEIFAEVGRRLGFENQFNFVD 512
Query: 453 DEEVIR--------KVLEANRISFEELKKKGFVKIP----------------EGERKWNT 488
V R ++ + + +S+E+L+K G ++ P + K+ T
Sbjct: 513 SAAVHREYVQLTAERLCDQSGVSYEKLQKLGPLQWPCRQSDQESQLLSTKRLYTDYKFCT 572
Query: 489 PSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPL-----RLLSPTYRMTVTSQYHNTHGIID 543
+G+ F + RGL+ + YP RL + T T +
Sbjct: 573 ENGRANFCLDHS--RGLA-----EPVDPNYPFVLTNGRLYGHWHTQTRTGHIEKIKKMHP 625
Query: 544 SN-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLL 590
L M+PKDA + GIK D V + + G + ++ +T + PG V +
Sbjct: 626 KPILEMHPKDAEKLGIKSQDLVAIKSRRGSAQLEVLVTRAIAPGTVFM 673
>gb|AAA23522.1| (M34827) biotin sulfoxide reductase (bisC) [Escherichia coli]
Length = 726
Score = 118 bits (292), Expect = 2e-25
Identities = 161/709 (22%), Positives = 271/709 (37%), Gaps = 140/709 (19%)
Query: 51 HSKDRLKLPLIKEG--------------DEFNETSWDKAISLVAEKLKEMIKEYGSESVL 96
HS R++ P++++G DEF SWD+A+ L+ ++ K + + YG S+
Sbjct: 14 HSNTRVRFPMVRKGFLASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASIF 73
Query: 97 VYKYAGDRGVVNYYFPMRLFHYLNASTIDGGICDRAGQ---EALKDIYGTAVGVD----- 148
Y V + L Y+ + GG G A + I VG
Sbjct: 74 AGSYGWRSNGVLHKASTLLQRYM---ALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQ 130
Query: 149 ----PEKLKEHKLIVYWGINAFWT-----------NLHGFMFAKRNNLEIWTVDVVRTET 193
P L+ ++V W N T L F + + ++ +D +R+ET
Sbjct: 131 QTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSET 190
Query: 194 AK-RSDKFFQVRP--DTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYV------ 244
DK V P TDV LG+A ++E +DE F+ G+ F +Y+
Sbjct: 191 VDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESDG 250
Query: 245 IKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVG 304
I + + ++ GV +IRE A F + ++ G+G QR G + I L A++G
Sbjct: 251 IAKTAEWAAEICGVGAAKIRELAAIFHQNTTMLMAGWGMQRQQFGEQKHWMIVTLAAMLG 310
Query: 305 H------RFGFIYDMKTIDKSYAEAKFLRTKPEL---------RIPQMELTEAIED---- 345
FG Y + L + +IP + EA+E+
Sbjct: 311 QIGTPGGGFGLSYHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARIVEALENPGGA 370
Query: 346 ----------GRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDV 395
++F++ + + NRL +A +K ++ V++ + F T A +D+
Sbjct: 371 YQHNGMNRHFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPELVVIS-ECFWTAAAKHADI 429
Query: 396 VLPANTFFERLDI--VDSYYHRYVL---------------------LNEPVAKG------ 426
VLPA T FER D+ Y +++++ L+E KG
Sbjct: 430 VLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEKGGYARFT 489
Query: 427 PGKSNSE-------VTRLIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKKGFVKI 479
GKS + V R + ++ P E + + N S ++ F+
Sbjct: 490 EGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFAAFLPR 549
Query: 480 PEGERKWNTPSGKIEFYSQRAVKRGLSPFP---------EYKKFKGKYPLRLLS--PTYR 528
G+ KIE +SQR G P E++ L++LS P +R
Sbjct: 550 SAGDPL--KTQRKIEIFSQRIADYGYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAHPAHR 607
Query: 529 MTVTSQYHNTHGII----DSNLYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVP 584
+ Y + + + ++P DA ERGI+DGD V ++N G+I ++E +
Sbjct: 608 LHSQLNYSSLRELYAVANREPVTIHPDDAQERGIQDGDTVRLWNARGQILAGAVISEGIK 667
Query: 585 PGVVLLYKAFWVKL--------LGWNVNFLTTDKKVEKYGKGSAFHSTW 625
PGV+ +++ W L VN LT D + G W
Sbjct: 668 PGVICIHEGAWPDLDLTADGICKNGAVNVLTKDLPSSRLGMAVRVIRRW 716
>pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio
Desulfuricans
Length = 723
Score = 117 bits (291), Expect = 3e-25
Identities = 178/686 (25%), Positives = 280/686 (39%), Gaps = 118/686 (17%)
Query: 7 RDCYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIK--E 63
R C C ++ ++GK + ++GNP + G LC KG+LL +SK+R+ PL++ +
Sbjct: 14 RYCGTGCGVLVGVKDGKAVAIQGNPNNH-NAGLLCLKGSLLIPVLNSKERVTQPLVRRHK 72
Query: 64 GDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLNAS 122
G + SWD+A+ L+A + + I YG SV Y +G Y ++F +
Sbjct: 73 GGKLEPVSWDEALDLMASRFRSSIDMYGPNSVAWYG-SGQCLTEESYVANKIFKGGFGTN 131
Query: 123 TIDGGICDRAGQEALKDIYGTAVGVDPEKLKEH----KLIVYWGINAFWTNLHGFMF--- 175
+DG R + Y T+ G D E + + + ++ I + + H +F
Sbjct: 132 NVDGN--PRLCMASAVGGYVTSFGKD-EPMGTYADIDQATCFFIIGSNTSEAHPVLFRRI 188
Query: 176 AKRNNLE----IWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVR 231
A+R +E I D RT T++ +D RP TD+ F +A V+I E L + F +
Sbjct: 189 ARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVIINEELDNPRFWQ 248
Query: 232 ENV---------YGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIG-Y 281
V FE +K ++ V++ V VE+I AR FAE + +
Sbjct: 249 RYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAARAFAESAATMSLWCM 308
Query: 282 GFQRSLAG--------------GEAVRAIAILPALVG--HRFGFIYDMKTID-------- 317
G + + G G+ R A +L G + G + D +
Sbjct: 309 GINQRVQGVFANNLIHNLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPAGRA 368
Query: 318 ----KSYAEAKFLRTKPELRIP------QMELTEAIEDGRVKFLYIYNSNPLASYPNQNR 367
K AE + L PE RI + L EA+ G VK + I +NP + PN N+
Sbjct: 369 IPNAKHRAEMEKLWGLPEGRIAPEPGYHTVALFEALGRGDVKCMIICETNPAHTLPNLNK 428
Query: 368 LRKALRKNDIFVVTHDIFLTDTAL-FSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKG 426
+ KA+ + F+V + F L ++D+VLP + ER + RY L E
Sbjct: 429 VHKAMSHPESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRY-SLTEKAVDP 487
Query: 427 PGKSNSEVTRLI--AKALGIKNPYL--YESDEEV---IRKVLEANRISFEELKKKGFVKI 479
PG+ V L+ A+ G+ +P L + + E+V R V + F + ++ K
Sbjct: 488 PGQCRPTVNTLVEFARRAGV-DPQLVNFRNAEDVWNEWRMVSKGTTYDFWGMTRERLRK- 545
Query: 480 PEGERKWNTPSGKIEFYSQRAVKRGLSP-----FPEYKKFKGK----------------- 517
E W PS S R V RG P P+ F GK
Sbjct: 546 -ESGLIWPCPSEDHPGTSLRYV-RGQDPCVPADHPDRFFFYGKPDGRAVIWMRPAKGAAE 603
Query: 518 -----YPLRLLSPTYRMTVTSQYHNT--HGIIDSNLYMNP--------KDAAERGIKDGD 562
YPL L S M V +H G + NP +DAA GIK GD
Sbjct: 604 EPDAEYPLYLTS----MRVIDHWHTATMTGKVPELQKANPIAFVEINEEDAARTGIKHGD 659
Query: 563 EVIVFNENGKIKTKIKLTEDVPPGVV 588
VIV ++ ++++ PG++
Sbjct: 660 SVIVETRRDAMELPARVSDVCRPGLI 685
>gb|AAC44131.1| (U38839) biotin sulfoxide reductase [Escherichia coli]
Length = 810
Score = 116 bits (288), Expect = 7e-25
Identities = 158/715 (22%), Positives = 287/715 (40%), Gaps = 141/715 (19%)
Query: 51 HSKDRLKLPLIKEG--------------DEFNETSWDKAISLVAEKLKEMIKEYGSESVL 96
H+ R++ P++++ D + + SW++A+ L+ E+ + K G ++
Sbjct: 80 HTTARIQHPMVRKSYLDNPLQPAKGRGEDTYVQVSWEQALKLIHEQHDRIRKANGPSAIF 139
Query: 97 VYKYAGDRGVVNYYFPMRLFHYLNA----STIDGGICDRAGQEALKDIYGTAVGVD---- 148
Y V + L Y+N S G A Q + + G+ +
Sbjct: 140 AGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGDYSTGAAQVIMPHVVGSVEVYEQQTS 199
Query: 149 -PEKLKEHKLIVYWGINAF------WTN-----LHGFMFAKRNNLEIWTVDVVRTETAKR 196
P L+ +++V WG+N W++ L F K++ + +D +R+ET +
Sbjct: 200 WPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEF 259
Query: 197 -SDKFFQVRPD--TDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLN--- 250
D + P+ TDV LG+A ++ + + F+ + + G +F+ Y+ S N
Sbjct: 260 FDDNATWIAPNMGTDVALMLGIAHTLMTQGKTIKVFLEKTLPGIRQFEEYLTGKSDNTPK 319
Query: 251 ---YVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH-- 305
+ ++ TGV +I + A A + ++ G+G QR G + + L A++G
Sbjct: 320 SAVWAAEITGVPEAQIVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIG 379
Query: 306 ----RFGFIYDMKTIDKSYAEAKFLRTKPELRIPQM--ELTEAIEDG------------- 346
FGF Y L P+ P + +EA +DG
Sbjct: 380 TPGGGFGFSYHYSNGGNPTRVGGVL---PDFSGPAIAGHASEAADDGGMTAIPVARIVDA 436
Query: 347 ------------------RVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTD 388
+K ++ + + NRL KA +K ++ VV+ + + T
Sbjct: 437 LENPGGKYQHNGKEQTYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVS-ECYWTA 495
Query: 389 TALFSDVVLPANTFFERLDIV--DSYYHRYVL-LNEPVA-KGPGKSNSEVTRLIAKAL-- 442
A +D+VLP T FER D+ Y +++++ + + VA + +++ +V +A+ L
Sbjct: 496 AAKHADIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKP 555
Query: 443 GIKNPYLYESDE--------EVIRKVLEANRISF---------------------EELKK 473
G K Y DE + +K A R++ E+ +
Sbjct: 556 GGKEIYTEGKDEMAWLKFFYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRHSEKNEQYVR 615
Query: 474 KGFVKIPEGERKWNTPSGKIEFYSQRAVKRGLSPFP---------EYKKFKGKYPLRLLS 524
G + + TPSGKIE YS+ K G P E+K + L+LL+
Sbjct: 616 YGDFRADPVKNALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLT 675
Query: 525 --PTYRMTVTSQY---HNTHGIIDSN-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIK 578
P +R+ Y + I D + ++ +DAA GI +GD V V+N+ G+I T
Sbjct: 676 AHPAHRLHSQLNYAELRKKYAIADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAV 735
Query: 579 LTEDVPPGVVLLYKAFWVKL-----LGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
+T+ + GVV +++ W L + N LT D + A +S V +
Sbjct: 736 VTDGIKKGVVCVHEGAWPDLENGLCKNGSANVLTADIPSSQLANACAGNSALVYI 790
>sp|P81186|NAPA_DESDE PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|3820902|emb|CAA77019.1|
(Y18045) nitrate reductase [Desulfovibrio desulfuricans]
Length = 755
Score = 115 bits (286), Expect = 1e-24
Identities = 177/686 (25%), Positives = 280/686 (40%), Gaps = 118/686 (17%)
Query: 7 RDCYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIK--E 63
R C C ++ ++GK + ++G+P + G LC KG+LL +SK+R+ PL++ +
Sbjct: 46 RYCGTGCGVLVGVKDGKAVAIQGDPNNH-NAGLLCLKGSLLIPVLNSKERVTQPLVRRHK 104
Query: 64 GDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLNAS 122
G + SWD+A+ L+A + + I YG SV Y +G Y ++F +
Sbjct: 105 GGKLEPVSWDEALDLMASRFRSSIDMYGPNSVAWYG-SGQCLTEESYVANKIFKGGFGTN 163
Query: 123 TIDGGICDRAGQEALKDIYGTAVGVDPEKLKEH----KLIVYWGINAFWTNLHGFMF--- 175
+DG R + Y T+ G D E + + + ++ I + + H +F
Sbjct: 164 NVDGN--PRLCMASAVGGYVTSFGKD-EPMGTYADIDQATCFFIIGSNTSEAHPVLFRRI 220
Query: 176 AKRNNLE----IWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVR 231
A+R +E I D RT T++ +D RP TD+ F +A V+I E L + F +
Sbjct: 221 ARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVIINEELDNPRFWQ 280
Query: 232 ENV---------YGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIG-Y 281
V FE +K ++ V++ V VE+I AR FAE + +
Sbjct: 281 RYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAARAFAESAATMSLWCM 340
Query: 282 GFQRSLAG--------------GEAVRAIAILPALVG--HRFGFIYDMKTID-------- 317
G + + G G+ R A +L G + G + D +
Sbjct: 341 GINQRVQGVFANNLIHNLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPAGRA 400
Query: 318 ----KSYAEAKFLRTKPELRIP------QMELTEAIEDGRVKFLYIYNSNPLASYPNQNR 367
K AE + L PE RI + L EA+ G VK + I +NP + PN N+
Sbjct: 401 IPNAKHRAEMEKLWGLPEGRIAPEPGYHTVALFEALGRGDVKCMIICETNPAHTLPNLNK 460
Query: 368 LRKALRKNDIFVVTHDIFLTDTAL-FSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKG 426
+ KA+ + F+V + F L ++D+VLP + ER + RY L E
Sbjct: 461 VHKAMSHPESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRY-SLTEKAVDP 519
Query: 427 PGKSNSEVTRLI--AKALGIKNPYL--YESDEEV---IRKVLEANRISFEELKKKGFVKI 479
PG+ V L+ A+ G+ +P L + + E+V R V + F + ++ K
Sbjct: 520 PGQCRPTVNTLVEFARRAGV-DPQLVNFRNAEDVWNEWRMVSKGTTYDFWGMTRERLRK- 577
Query: 480 PEGERKWNTPSGKIEFYSQRAVKRGLSP-----FPEYKKFKGK----------------- 517
E W PS S R V RG P P+ F GK
Sbjct: 578 -ESGLIWPCPSEDHPGTSLRYV-RGQDPCVPADHPDRFFFYGKPDGRAVIWMRPAKGAAE 635
Query: 518 -----YPLRLLSPTYRMTVTSQYHNT--HGIIDSNLYMNP--------KDAAERGIKDGD 562
YPL L S M V +H G + NP +DAA GIK GD
Sbjct: 636 EPDAEYPLYLTS----MRVIDHWHTATMTGKVPELQKANPIAFVEINEEDAARTGIKHGD 691
Query: 563 EVIVFNENGKIKTKIKLTEDVPPGVV 588
VIV ++ ++++ PG++
Sbjct: 692 SVIVETRRDAMELPARVSDVCRPGLI 717
>emb|CAB71267.1| (AL138598) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 776
Score = 115 bits (286), Expect = 1e-24
Identities = 105/436 (24%), Positives = 192/436 (43%), Gaps = 58/436 (13%)
Query: 9 CYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEG--- 64
C C + + + G+++ V+G P+ +G +C K L+P+ ++ +RL PL +
Sbjct: 14 CNSNCRLNVDLKAGRVLAVRGEDSDPVQQGQVCVKAELMPQLVYNTERLTRPLRRVSGAK 73
Query: 65 ----DEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLN 120
+F SW++A+ +A+K + ++ G + + G R+F L
Sbjct: 74 GSPHSKFEAVSWEEALHTIAKKFLAL-RDAGQAHTIANRTTGRMPRGTGSLVARMFAMLG 132
Query: 121 A--STIDGGICDRAGQEALK---------DIYGTAVGVDPEKLKEHKLIVYWGINAFWTN 169
+ +T G +C+ AG AL + YGT + L + ++ G N T+
Sbjct: 133 SPNNTDVGPVCNDAGGNALAMTFGLGNFTNGYGTDGSTGKDDLGSARHYLFLGTNQAETH 192
Query: 170 LHGFMFA----KRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLY 225
F + K NN + VD T T +D++ +P TD+ L + +++E LY
Sbjct: 193 PVTFDYLLRGRKENNATLTVVDPRLTPTGAAADRWVAPKPHTDLALLLAMLHHIVQEKLY 252
Query: 226 DEDFVRENVYGFEEFKNYVIK--LSLNYVSQETGVEVEEIREFAREFAE-KKGIIHIGYG 282
D+ FV+ V GF+E + ++ K + + ++ TGV+ + I + A E+A+ K I G
Sbjct: 253 DKAFVKRWVAGFDELRRHLAKHQYTPEWAAKVTGVKADVITKMAVEYAKAKPAAIFCNAG 312
Query: 283 FQRSLAGGEAVRAIAILPALVGHRFGFIYDMKTIDKSYAEAKFL-RTKP-ELRIPQM--- 337
L + R L A+ G+ I + F+ T P +L++P +
Sbjct: 313 ISHQLGAFDTYRVATFLAAVTGN----------IGQPGGGCNFMHNTWPGDLQLPPLDAD 362
Query: 338 --ELTEAIEDGRVKF-------------LYIYNSNPLASYPNQNRLRKALRKNDIFVVTH 382
E EA+ G F + NPL S N +++KA + D +V T
Sbjct: 363 LPERREALPVGPDYFAESILTDNPYRLRAVVTQGNPLVSSANTTKVKKAFEQLDFYVYT- 421
Query: 383 DIFLTDTALFSDVVLP 398
+F+ + A ++D++LP
Sbjct: 422 GLFMEEAAYYADIILP 437
>emb|CAB69761.1| (AL137187) putative reductase [Streptomyces coelicolor A3(2)]
Length = 819
Score = 115 bits (284), Expect = 2e-24
Identities = 122/482 (25%), Positives = 194/482 (39%), Gaps = 46/482 (9%)
Query: 16 ISEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGD-EFNETSWDK 74
++ G + V + P+ RG LC KG RL PL++ GD WD+
Sbjct: 27 LTPVEGGTVEVSERTDFPVNRGALCGKGRTAAAVLAPGARLTSPLVRSGDGALVPAGWDE 86
Query: 75 AISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID--GGICDRA 132
A+ +A L+ YG++++ V+ G Y L S ID G C +
Sbjct: 87 ALDRIAGNLERTRARYGADALGVFGGGGLTNEKAYALGKFARVVLGTSQIDYNGRFCMSS 146
Query: 133 GQEALKDIYGTAVGVD--PEKLKEHKLIVYWGINAFWT---NLHGFMFAKRNNLEIWTVD 187
A +G G+ E + ++ G N T +L F + N + VD
Sbjct: 147 AAAAGTRAFGLDRGLPFPLEDVPRTGCVILVGSNPAETMPPSLRYFTELRENGGTLIVVD 206
Query: 188 VVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKL 247
RT+TA+++D RP TD+ ALG+ +++ E DE +V E G+EE + +
Sbjct: 207 PRRTKTAEQADLHLAPRPGTDLALALGMLHLVVAEGRVDEAYVEERTSGWEEARAAAMAH 266
Query: 248 SLNYVSQETGVEVEEIREFAREFA---------------EKKGIIHIGYGFQRSLAGGEA 292
YV + TGV V E+RE R F + KG +G LA G A
Sbjct: 267 WPEYVERITGVSVPELREAVRLFCAPEAAMVLTARGPEQQAKGTDTVGAWINLCLATGRA 326
Query: 293 VRAIAILPALVGH---RFGFIYDMKTIDKSYAEAKFLRTKPELRIPQM------------ 337
R ++ L G + G + K D+ K + ++
Sbjct: 327 GRPLSGYGCLTGQGNGQGGREHGQKA-DQLPGYRKLTDPAARRHVAEVWGVDPDALPGPG 385
Query: 338 ----ELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFS 393
EL +A+ V+ L + SNP+ S P + LR D F+ D+ L++TA +
Sbjct: 386 RSAYELLDALGTD-VRSLLVMGSNPVVSAPRAAHVEGRLRSLD-FLAVCDVVLSETAELA 443
Query: 394 DVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPG-KSNSEVTRLIAKALGIKNPYLYES 452
DVVLP + E S R +L + G + + EV +A LG++ + +
Sbjct: 444 DVVLPVTQWAEETGTTTSLEGRVLLRRRAITPPDGVRGDLEVLHGLAGRLGVQKGFPTDP 503
Query: 453 DE 454
+E
Sbjct: 504 EE 505
>gb|AAD45942.1|AF089813_5 (AF089813) nitrate reductase [Synechococcus PCC7002]
Length = 742
Score = 110 bits (273), Expect = 4e-23
Identities = 141/663 (21%), Positives = 261/663 (39%), Gaps = 111/663 (16%)
Query: 24 LIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEG--DEFNETSWDKAISLVAE 81
L V G+ +HP + G +C KGA + +DRL P+ + D+F SWD A L+ E
Sbjct: 32 LKVMGDRQHPSSLGKVCVKGATIAESL-DQDRLLYPMYRRSLQDQFQRISWDDAFELIVE 90
Query: 82 KLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLNASTIDGG--ICDRAGQEALK 138
++K + GSE + +Y +G +YY +L L + D +C +
Sbjct: 91 QIKTVKATLGSEGIAMYG-SGQLQTEDYYTAQKLLKGCLGTNNFDANSRLCMSSAVAGYI 149
Query: 139 DIYGTAVGVDP--EKLKEHKLIVYWGINAFWTNLHGFMFA------KRNNLEIWTVDVVR 190
+G A G P E L+ G N H +F KR+ ++ VD R
Sbjct: 150 QSFG-ADGPPPCYEDLELTDCAFIIGSNT--AECHPIVFNRLREHHKRSKAKLIVVDPRR 206
Query: 191 TETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLN 250
T+TA+ +D ++P TD+ G+A ++++ D F+ E GF ++ + +
Sbjct: 207 TKTAEVADLHLAIKPGTDIDLLNGIAHLLLKWGKIDTLFIDECTKGFSKYAMLIQSYTPE 266
Query: 251 YVSQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEAVRAIAILPALVG----- 304
V++ G+ ++ + + A+ +A ++ + G +S G VR + L + G
Sbjct: 267 TVARRCGIRIDHLEQAAKYWANADNVLSLWSMGMNQSAEGTAKVRTLINLHLMTGEIGKP 326
Query: 305 -----------------------HRFGFIYDMKTIDKSYAEAKFLRTKPELRIP-----Q 336
H +K + K + P P
Sbjct: 327 GAGPFSLTGQPNAMGGREAGGLAHLLPGYRLVKNPEHRATLEKAWQLPPGTISPLPGKDA 386
Query: 337 MELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVV 396
+ E ++ G V L++ +NP S P+ R + AL K+ + + T+T+ ++ ++
Sbjct: 387 WAMIEGLDMGTVGLLWVVATNPAVSMPDLERTKAALLKSPFTICQDAYYPTETSNYAHLL 446
Query: 397 LPANTFFERLDIVDSYYHRYVLLNEPVAKGPGK--SNSEVTRLIAKALGIKNPYLYESDE 454
LPA + E+ + + R V PG+ ++ E+ + + LG + + S
Sbjct: 447 LPALQWGEKTGAMTN-SERVVTYCPQFRDRPGEAWADWEIFAEVGRRLGFQQQFRAVSSA 505
Query: 455 EVIRKVL--------EANRISFEELKKKGFVKIP-------------------------- 480
EV + + + +S + L +G ++ P
Sbjct: 506 EVYAEFVQLTGDRPCDMTGLSHQRLATEGPIQWPCPANETKCDPETTADNRGLLQKLFHQ 565
Query: 481 ---------EGERKWNTPSGKIEFYSQRAVKRGLSPFPEYKKFKGKYPL-----RLLSPT 526
+R+++TP G+ F + + RGL+ P YP RL
Sbjct: 566 DEPLKGKRLYTDRRFHTPDGRARFAAYHS--RGLAEPP-----NTDYPFVLTIGRLYGHW 618
Query: 527 YRMTVTSQYHNTHGIIDSN-LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPP 585
+ MT T + + + L ++P+DA I DG+ V V + G + +T+++ P
Sbjct: 619 HTMTRTGRIKKIQKMHPNPFLEIHPRDADRLSITDGEMVEVRSPRGMARFPALITKNITP 678
Query: 586 GVV 588
G V
Sbjct: 679 GTV 681
>pir||A83424 assimilatory nitrate reductase PA1779 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947759|gb|AAG05168.1|AE004603_8 (AE004603)
assimilatory nitrate reductase [Pseudomonas aeruginosa]
Length = 908
Score = 109 bits (271), Expect = 7e-23
Identities = 156/678 (23%), Positives = 269/678 (39%), Gaps = 94/678 (13%)
Query: 9 CYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEF 67
C C ++ E +++ V+G+P HP G LC KGA L + R P ++ G +
Sbjct: 17 CGVGCGVLIEHDGERILGVQGDPRHPANFGRLCSKGASLHLTGDLQARALYPQLRLGKQL 76
Query: 68 NE--TSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYL-NASTI 124
+ W+ A+ A + E I+E+G +SV Y +G +YY +L L + I
Sbjct: 77 ARARSDWESALEHAAGRFAETIREHGPDSVAFY-ISGQLLTEDYYAFNKLARALVGTNNI 135
Query: 125 DGGICDRAGQEALKDIYGTAVGVDP-----EKLKEHKLIVYWGINAFWTNLHGFMF---- 175
D R + Y ++G D E L ++ G N + H +F
Sbjct: 136 DSN--SRLCMSSAVVGYKRSLGADAPPCSYEDLDCADCVLIAGSNMAFA--HPVLFRRLE 191
Query: 176 ---AKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRE 232
A R + I +D RT+T + +D + P TDV G+ +++ E+ D F+ E
Sbjct: 192 AAKAARPEMRIVVIDPRRTDTCELADLHLALLPGTDVALFHGILHILLWEDWIDRSFIAE 251
Query: 233 NVYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIG-YGFQRSLAGGE 291
+ GF + K V + V+ G++ +++ A + + G +S AG
Sbjct: 252 HTEGFADLKELVRDYTPAAVADICGIDRADLQRCAEWIGRSPRFLSLWCMGLNQSSAGSA 311
Query: 292 AVRAI---------------------------------AILPALVGHRFGFIYDMKTIDK 318
A+ ++ L GHR +
Sbjct: 312 KNSALINLHLATGKIGRAGCGPFSLTGQPNAMGGRETGSLANLLPGHREAADPGHRAEVA 371
Query: 319 SYAEAKFLRTKPELRIPQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIF 378
Y + L T P L +EL +A+ DGR+K L+I +NP S P+Q ++ +AL +
Sbjct: 372 HYWGVEQLPTSPGL--SAIELFDAVHDGRIKALWIACTNPAQSLPDQRKIHEALARCPFV 429
Query: 379 VVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNS------ 432
VV T+T ++D++LPA ++ E+ V + R + V PG++
Sbjct: 430 VVQEAFAGTETCQYADLLLPAASWGEKEGSVTNSERRISHVRRAVPP-PGEARQDWNIVC 488
Query: 433 EVTRLIAKALGIKNPYLYE-SDEEVI---RKVLEANRISFEELKKKGFVKIPE-GERKWN 487
+ R + L P L+ +D + K+L A R +L + + G ++W
Sbjct: 489 DFARRLEGHLRPAKPGLFAFADSRSLFDEYKLLTAGRDL--DLSGLSYALLDRLGPQQWP 546
Query: 488 TPSGKIEFYSQRAVKRGLSPFPE-------------YKKFKGKYPL-----RLLSPTYRM 529
P+G E + R G P +K +YPL RL + M
Sbjct: 547 FPTG-AEQGTARLYADGRFPTASGRAQLVAEPYRAAQEKRDARYPLTLNTGRLRDQWHGM 605
Query: 530 TVTSQYHNTHGIIDSNL-YMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGVV 588
+ T G + L +++P++ R + DG V + + G + + + V PG
Sbjct: 606 SRTGTCARLFGHEEEALVHLHPEELRRRQLLDGQLVRLKSRRGALVLPVSADDSVRPGQA 665
Query: 589 LL---YKAFWVKLLGWNV 603
L + ++K LG NV
Sbjct: 666 FLPMHWGDRFLKGLGCNV 683
>pir||B83307 probable molybdopterin oxidoreductase PA2714 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948789|gb|AAG06102.1|AE004699_7 (AE004699) probable
molybdopterin oxidoreductase [Pseudomonas aeruginosa]
Length = 769
Score = 108 bits (267), Expect = 2e-22
Identities = 122/515 (23%), Positives = 222/515 (42%), Gaps = 67/515 (13%)
Query: 3 SACMRDCYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLI 61
+AC+ C C + + NG++ ++G+ +HP ++G++C K + + + DRL P+
Sbjct: 11 TACIL-CSLNCGLEVQTENGRISKIRGDDDHPASQGYVCEKSQRMDYYQNGADRLDTPMR 69
Query: 62 KEGD-EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLN 120
+ D + WD AI VAEK + + +G ES+L Y + + L
Sbjct: 70 RRPDGSYEAIDWDTAIREVAEKFLAIKRRHGGESILYYGGGAQGNHLGGAYGDSTLKALG 129
Query: 121 ASTIDGGIC-DRAGQEALKD-IYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFM---- 174
+ ++ G+ ++ ++GT V D E + LI G N + + HGF
Sbjct: 130 VKYRSNALAQEKTGEFWVQGKMFGTGVHGDFEHCEGAILI---GKNPWQS--HGFARARV 184
Query: 175 ----FAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFV 230
AK I +D +ETA +D Q+RP TD + +++++ L D++
Sbjct: 185 LLNAMAKDPARSIIVIDPRLSETAALADFHLQIRPGTDAWCLAALVGIIVQDGLLARDWL 244
Query: 231 RENVYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAG 289
E+ G+E + + + + Y ++ GV +++R AR A + + G Q +L
Sbjct: 245 AEHTSGYEHIVDELNAIPVAYCAETCGVAEDKLRAAARRIASASSVSALEDLGMQMNLHS 304
Query: 290 GEAVRAIAILPALVGHRFG----------FIYDMKTIDKSYAEAKFLRTKPELR------ 333
++ L GH +G F+ K + K + E R
Sbjct: 305 TLGSYLQRLVWLLTGH-YGRPGTSNAFVPFLSLSKASKGDTSMGKRGAPRVEKRSPVANA 363
Query: 334 -----------IPQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTH 382
IP+ LT+ R + + + NPL S + R+R+A+R ++ VV
Sbjct: 364 KIIIGLIPCNVIPEEILTD--HPKRYRAMLVETGNPLHSLADSQRMREAMRALELSVVI- 420
Query: 383 DIFLTDTALFSDVVLPANTFFER-------LDIVDSYYHRYVLLNEPV--AKGPGKSNSE 433
D+ +T+TA +D VLPA + FE+ L+ + +H L P+ A+ +E
Sbjct: 421 DVAMTETARHADYVLPAASQFEKAEATFFNLEFPRNAFH----LRAPLFPARPGTLPEAE 476
Query: 434 VTRLIAKALGIKNPYLYESDEEVIRKVLEANRISF 468
+ + +A+G+ L E D +R L+ R +F
Sbjct: 477 IHARLLEAMGV----LGEKDYRPLRLALKLGRKAF 507
>sp|P39458|NARB_SYNP7 NITRATE REDUCTASE >gi|480267|pir||S36605 nitrate reductase (EC
1.7.99.4) chain A - Synechococcus sp. (strain PCC 7942)
>gi|397158|emb|CAA52675.1| (X74597) nitrate reductase
[Synechococcus sp.]
Length = 729
Score = 107 bits (264), Expect = 5e-22
Identities = 138/642 (21%), Positives = 264/642 (40%), Gaps = 79/642 (12%)
Query: 26 VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEG--DEFNETSWDKAISLVAEKL 83
++G+ +HP ++G +C KGA + SK RLK P+ + D F E SWD+A+ + +++
Sbjct: 56 IRGDRQHPSSQGMVCVKGATVAESV-SKSRLKYPMFRASLDDPFTEISWDEALDRLCDRI 114
Query: 84 KEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLNASTIDGGICDRAGQEALKDIYG 142
++ +YG + + Y +G +YY +L L + D R + Y
Sbjct: 115 QQTQADYGKDGICFYG-SGQFQTEDYYIAQKLVKGCLGTNNFDTN--SRLCMSSAVSAYS 171
Query: 143 TAVGVDP-----EKLKEHKLIVYWGINAFWTNLHGFMFA------KRNNLEIWTVDVVRT 191
+G D E L ++ G N H +F K+ + VD T
Sbjct: 172 LCLGSDGPPACYEDLDLADCLLIVGSNT--AECHPILFNRYRKRHKQGGTNLIVVDPRCT 229
Query: 192 ETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNY 251
TA+ +D ++P +DV G+ ++ + +DF+ GFE++ +
Sbjct: 230 PTAEVADLHLALKPGSDVALLNGLGWLLYQMGYVKKDFIANQTEGFEDWLAIIEDYPPQR 289
Query: 252 VSQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEAVRAIAIL----------- 299
++ TG+ V E+ A A + + + G +S+ G ++ L
Sbjct: 290 TAELTGLAVAELVRAADLIASAQRWLSLWSMGVNQSIQGTAKATSLINLHLLTRQIGLPG 349
Query: 300 ----------PALVGHRFGFIYDM-----KTIDKSY-AEAKFLRTKPELRI-PQ-----M 337
A+ G G + + K ID + A+ + + P I PQ
Sbjct: 350 CGPFSLTGQPNAMGGRETGGLAHLLPGYRKVIDPQHRADVETIWGLPMGSISPQPGRTAW 409
Query: 338 ELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVL 397
++ E +E G V FL++ +NP S P+ R + AL+++ V+ T+T ++ ++L
Sbjct: 410 QMIEGLEQGAVGFLWVAATNPAVSLPDVKRAQAALKRSPFTVLQDAYHPTETTTYAHLLL 469
Query: 398 PANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNS--EVTRLIAKALGIKNPY------L 449
PA + E+ + + R V L + + PG++ + ++ + + LG Y
Sbjct: 470 PAAQWSEKTGTMTN-SERRVTLCQAFRQPPGEARADWQIFAEVGRRLGFAFDYTDAAAVF 528
Query: 450 YESDEEVIRKVLEANRISFEELKKKGFVKIP-EGERKWNTPSGKIEFYSQRAVKRGLSPF 508
E + ++ + + +S E L + G + P + T S ++ A G + F
Sbjct: 529 AEYVQVTAGRLCDLSGLSHELLAQAGPQQWPFPAGAEPTTESKRLYTKHHFAYADGRARF 588
Query: 509 PEYKKF------KGKYPL-----RLLSPTYRMTVTSQYHNTHGIIDSN-LYMNPKDAAER 556
+ +YPL RL + T T + + + S + ++P+DA
Sbjct: 589 QPFHHLGVAEPPDDRYPLVLTVGRLYPDWHTQTRTGRIDKINKLHPSAFVEIHPRDADRY 648
Query: 557 GIKDGDEVIVFNENGKIKTKIKLTEDVPPGVVLL---YKAFW 595
I +G V++ + G+ K+T + PGV+ + + A W
Sbjct: 649 NISEGQAVVIRSRRGEGCFPAKVTTAISPGVLFVPMHWGALW 690
>gb|AAA25100.2| (L06800) nitrate reductase large subunit [Klebsiella oxytoca]
Length = 866
Score = 106 bits (263), Expect = 6e-22
Identities = 113/493 (22%), Positives = 211/493 (41%), Gaps = 58/493 (11%)
Query: 9 CYDTCSII-SEFRNGKLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEF 67
C C +I S +G++ V+G+ +HP G LC KGA L + R+ P + +
Sbjct: 11 CGVGCGVIASRAPHGQVSVRGDEQHPANFGRLCVKGAALGETVGLEGRMLFPEV----DG 66
Query: 68 NETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLNASTID- 125
+W +A++ +L+E+I +G ++V Y +G +YY +L ++ A+ ID
Sbjct: 67 ERATWPQALAAAGSRLREIIDRHGPQAVAFYA-SGQLLTEDYYAANKLMKGFIGAANIDT 125
Query: 126 -GGICDRAGQEALKDIYGT-AVGVDPEKLKEHKLIVYWGINAFWTNLHGFMF-----AKR 178
+C + K G V E ++ L+V G NA W H ++ AKR
Sbjct: 126 NSRLCMSSAVTGYKRALGADVVPCSYEDVENSDLVVLVGSNAAWA--HPVLYQRLAQAKR 183
Query: 179 NN--LEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYG 236
+N + + +D RT T +D+ + P +D +G+ + +DF
Sbjct: 184 DNPQMRVVVIDPRRTATCDIADRHLALAPGSDGGLFVGLLNAIAASGAISDDF-----ND 238
Query: 237 FEEFKNYVIKLSLNYVSQETGVEVEEIREFAREF-AEKKGIIHIGYGFQRSLAGGEAVRA 295
+ L+ V+Q G+ ++I +F REF A + I G +S +G + A
Sbjct: 239 AQRALTIAQDWDLDKVAQFCGLPRQQIADFYREFIAAPRAITLYTMGINQSASGSDKCNA 298
Query: 296 IAIL---------------------PALVGHRFGFIYDMKTIDKSYAE------AKFLRT 328
I + A+ G G + M ++ A+F +
Sbjct: 299 IINVHLACGKYGRPGCGPFSLTGQPNAMGGREVGGLATMLAAHMNFEPDDLRRLARFWGS 358
Query: 329 KPELRIPQM---ELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIF 385
+ + P + EL AI G VK ++I +NP+ S P+ + + +AL + + +++ +
Sbjct: 359 ERLAQTPGLTGVELFAAIGRGEVKAVWIMGTNPVVSLPDSHAVSEALARCPLVIISDVVA 418
Query: 386 LTDTALFSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNSE--VTRLIAKALG 443
TDT F+ + PA + E+ V + R + PG++ ++ + +A+ALG
Sbjct: 419 DTDTGRFAHIRFPALAWGEKSGTVTN-SERRISRQRAFMPPPGEARADWWIVARVAEALG 477
Query: 444 IKNPYLYESDEEV 456
+ + ++ EV
Sbjct: 478 FGSAFAWQHPHEV 490
>pir||E70916 probable bisC protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2131054|emb|CAB09264.1| (Z95844) bisC [Mycobacterium
tuberculosis]
Length = 766
Score = 106 bits (261), Expect = 1e-21
Identities = 163/713 (22%), Positives = 271/713 (37%), Gaps = 132/713 (18%)
Query: 46 LPRWFHSKDRLKLPLIKEG--------------DEFNETSWDKAISLVAEKLKEMIKEYG 91
LP + R+ P ++ G +EF E SWD+ I L+A +L+ + YG
Sbjct: 41 LPGAVRHRSRIANPAVRRGWLQHGPGPSSARGAEEFVEVSWDELIELLASELRRTVDRYG 100
Query: 92 SESVLVYKYAGDRGVVNYYFPMRLFHYLN----------------ASTIDGGICDRAGQE 135
+E++ Y ++ ++ +LN + I I A E
Sbjct: 101 NEAIYGSSYGWASAGRFHHAQSQVHRFLNMLGGYTASRHSYSAGASEVIFPHIVGAALFE 160
Query: 136 ALKDIYGTAVGVDPEKLK--------EHKLIVYWGINAFWTNLHGFMFAKRNNLEIWTVD 187
AL + V VD L ++ ++ G A + + R + +V
Sbjct: 161 ALAETTTWDVIVDHTALLVAFGGLPVKNTAVMPGGTTAHPDRDYVGRYRARGG-RLVSVS 219
Query: 188 VVRTETAKRSD------KFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFK 241
+R + A + ++ P TDV LG+A V+ E+L D F+ G+E F+
Sbjct: 220 PLRDDIAAIAGPLDDRCRWLAPVPGTDVAIMLGLAYVLATESLADRAFLGRYCTGYERFE 279
Query: 242 NYVIKL------SLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRA 295
Y++ L + + + +G+ ++R+ AR AE + +I QR G + V
Sbjct: 280 RYLLGLDDGIPKTPEWAAALSGLAAGDLRDLARRMAEHRTLITTSLSLQRIEHGEQTVWM 339
Query: 296 IAILPALVGH------RFGFIYDMKTIDKSYAEAKFLRTKPELR------IPQMELTEAI 343
A L A++G FG Y + A L P+ IP ++E +
Sbjct: 340 AATLAAMLGQIGLPGGGFGHGYSSNGVGNPPL-ACGLPALPQGNNPVSTFIPVAAISELL 398
Query: 344 E--------DGR------VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDT 389
+ +GR +K +Y NP + N RLR+AL + D VV H+ + T
Sbjct: 399 QRPGQRLAYNGRLLELPDIKCVYWAGGNPFHHHQNLPRLRRALSRVDTIVV-HEQYWTAM 457
Query: 390 ALFSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGP---GKSNSEVTRLIAKALGIKN 446
A +D+V+P T FER D S + L+ P P + + +A LG
Sbjct: 458 AKHADIVVPTTTSFERDDFAASKTNP-TLIAMPAMVPPYANARDDYHTFSALAHRLGFGK 516
Query: 447 PYLY-ESDEEVIRKV-------LEANRISFEELKKKGFVKIP--------------EGER 484
+ S E + + L+ SF E + G +++P
Sbjct: 517 QFTEGRSAREWLEHMYDKWSAELDFPVPSFAEFWRTGRLELPTRTGLTWLADFRADPAAH 576
Query: 485 KWNTPSGKIEFYSQRAVK------RGLSPFPEYKKFKG-----KYPLRLLSPTYRMTVTS 533
TPSG+IE +S G + E ++ G +YPL L++ R + S
Sbjct: 577 PLGTPSGRIEIFSDTVDAFALPDCAGHPTWYEPSEWLGGPRAARYPLHLIANQPRTRLHS 636
Query: 534 QYHNTHGIIDSN------LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVPPGV 587
Q + + S + ++P DAA R + DGD V VFN+ G + + + + P V
Sbjct: 637 QLDHGGASMASKIRGREPIRIHPDDAAARELTDGDIVRVFNDRGACLAGVVIDDGLRPKV 696
Query: 588 VLLYKAFWV----------KLLGWNVNFLTTDKKVEKYGKGSAFHSTWVEVIR 630
V L W + N N L+ D GS V++ R
Sbjct: 697 VQLSTGAWFDPADPRDPDSMCVHGNPNALSNDSGTSSLAHGSTGQHVLVQIER 749
>gb|AAA16399.1| (U00008) yojC [Escherichia coli]
Length = 809
Score = 104 bits (258), Expect = 2e-21
Identities = 137/621 (22%), Positives = 255/621 (41%), Gaps = 123/621 (19%)
Query: 7 RDCYDTCSIISEFRNGKLIV-KGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLI---- 61
R C C ++ + G+++ +G+P+ P+ RG C KG LP+ + KDRL+ PL+
Sbjct: 28 RFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLRQPLLRMKN 87
Query: 62 ----KEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH 117
KEG EF +WD+A ++ EK K +KE G ES+ ++ +G + Y +LF
Sbjct: 88 GKYDKEG-EFTPITWDQAFDVMEEKFKTALKEKGPESIGMFG-SGQWTIWEGYAASKLF- 144
Query: 118 YLNASTIDGGICDRAGQEALKDIYG--TAVGVDP-----EKLKEHKLIVYWGINAFWTNL 170
A I A + G G+D + +++ V WG N +
Sbjct: 145 --KAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGAN--MAEM 200
Query: 171 HGFMFAK-------RNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEEN 223
H ++++ N+ + + + + + +D P +D++ +A +I+ N
Sbjct: 201 HPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNN 260
Query: 224 LYDEDFVRENV----------YG-----------------------FEEFKNYVIKLSLN 250
++DF ++V YG FE++K +V + +L
Sbjct: 261 AINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLE 320
Query: 251 YVSQETGVEVEEIREFAREFAE--KKGIIHIGYGFQRSLAGGEAVRAIAILPALVG---- 304
++ TGV +++ + A+ +A+ KK I + GF + G A + L L G
Sbjct: 321 KTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQ 380
Query: 305 -------------------------HRFGFIYDMKTIDKSY---AEAKF---LRTKP-EL 332
HR DM ++ + E K+ T P ++
Sbjct: 381 PGCGPFSLTGQPSACGTAREVGTFAHRLP--ADMVVTNEKHRDICEKKWNIPSGTIPAKI 438
Query: 333 RIPQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLR-KALRKNDIFVVTHDIFLTDTAL 391
+ + A++DG++ + +N + + PN N R R F++ D + T +AL
Sbjct: 439 GLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSAL 498
Query: 392 FSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNSEVTRLIAKALGIKNPYLYE 451
+D++LP + E+ + R + V + PG++ S++ +L+ + K ++
Sbjct: 499 AADLILPTAMWVEKEGAYGNAERRTQFWRQQV-QAPGEAKSDLWQLVQFSRRFKTEEVWP 557
Query: 452 SD-----EEVIRKVLEANRISFEELKKKGFVKIPEGERKWNTPSGKIEFYSQRAV----- 501
D E+ K L + E+ K F E + N S ++ FY Q+ +
Sbjct: 558 EDLLAKKPELRGKTLYEVLYATPEVSK--FPVSELAEDQLNDESRELGFYLQKGLFEEYA 615
Query: 502 --KRG----LSPFPEYKKFKG 516
RG L+PF +Y K +G
Sbjct: 616 WFGRGHGHDLAPFDDYHKARG 636
>pir||S18213 formate dehydrogenase (EC 1.2.1.2) chain A - Wolinella succinogenes
>gi|48507|emb|CAA37989.1| (X54057) formate dehydrogenase
[Wolinella succinogenes]
Length = 939
Score = 104 bits (258), Expect = 2e-21
Identities = 82/306 (26%), Positives = 148/306 (47%), Gaps = 11/306 (3%)
Query: 9 CYDTCSIISEFRNGKLIVKG-NPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEF 67
C C II+E +G + + +HPI++G C KGA + S+ RL+ P+ K G ++
Sbjct: 64 CSVGCGIIAEVVDGVWVRQEVAQDHPISQGGHCCKGADMIDKARSETRLRYPIEKVGGKW 123
Query: 68 NETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPM--RLFHYLNASTID 125
+TSWD A+ +A++L+++ ++YG +SV+ + +YYF F N TI
Sbjct: 124 RKTSWDSAMDKIAKQLQDLTQKYGPDSVMFIGGSKCSIEQSYYFRKFAAFFGTNNLDTI- 182
Query: 126 GGICDRAGQEALKDI--YGTAVGVDPEKLKEHKLIVYWG---INAFWTNLHGFMFAKRNN 180
IC + + YG + + + + G +N +H + AK
Sbjct: 183 ARICHAPTVAGVSNTLGYGGMTNHLADMMHSKAIFIIGGNPAVNHPVGMVH-ILRAKEAG 241
Query: 181 LEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEF 240
+I VD + TA ++D + ++R TDV F G+ + +++ L D++F+R+ ++G+EE
Sbjct: 242 AKIIVVDPHFSRTATKADHYVRLRNGTDVAFMYGMIRHIVKNGLEDKEFIRQRLFGYEEI 301
Query: 241 KNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEAVRAIAIL 299
+ + V + TGV +++ E FA+ K I G G + G R IL
Sbjct: 302 LKECEQYTPEVVEEVTGVPAQQLIEITEIFAKAKPASLIWGMGLTQHTTGTSNTRLAPIL 361
Query: 300 PALVGH 305
++G+
Sbjct: 362 QMILGN 367
>dbj|BAA15989.1| (D90850) Probable nitrate reductase (EC 1.7.99.4). [Escherichia
coli]
Length = 757
Score = 103 bits (255), Expect = 5e-21
Identities = 137/621 (22%), Positives = 254/621 (40%), Gaps = 123/621 (19%)
Query: 7 RDCYDTCSIISEFRNGKLIV-KGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLI---- 61
R C C ++ + G+++ +G+P+ P+ RG C KG LP+ + KDRL PL+
Sbjct: 47 RFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMKN 106
Query: 62 ----KEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH 117
KEG EF +WD+A ++ EK K +KE G ES+ ++ +G + Y +LF
Sbjct: 107 GKYDKEG-EFTPITWDQAFDVMEEKFKTALKEKGPESIGMFG-SGQWTIWEGYAASKLF- 163
Query: 118 YLNASTIDGGICDRAGQEALKDIYG--TAVGVDP-----EKLKEHKLIVYWGINAFWTNL 170
A I A + G G+D + +++ V WG N +
Sbjct: 164 --KAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGAN--MAEM 219
Query: 171 HGFMFAK-------RNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEEN 223
H ++++ N+ + + + + + +D P +D++ +A +I+ N
Sbjct: 220 HPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNN 279
Query: 224 LYDEDFVRENV----------YG-----------------------FEEFKNYVIKLSLN 250
++DF ++V YG FE++K +V + +L
Sbjct: 280 AINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLE 339
Query: 251 YVSQETGVEVEEIREFAREFAE--KKGIIHIGYGFQRSLAGGEAVRAIAILPALVG---- 304
++ TGV +++ + A+ +A+ KK I + GF + G A + L L G
Sbjct: 340 KTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQ 399
Query: 305 -------------------------HRFGFIYDMKTIDKSY---AEAKF---LRTKP-EL 332
HR DM ++ + E K+ T P ++
Sbjct: 400 PGCGPFSLTGQPSACGTAREVGTFAHRLP--ADMVVTNEKHRDICEKKWNIPSGTIPAKI 457
Query: 333 RIPQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLR-KALRKNDIFVVTHDIFLTDTAL 391
+ + A++DG++ + +N + + PN N R R F++ D + T +AL
Sbjct: 458 GLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSAL 517
Query: 392 FSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNSEVTRLIAKALGIKNPYLYE 451
+D++LP + E+ + R + V + PG++ S++ +L+ + K ++
Sbjct: 518 AADLILPTAMWVEKEGAYGNAERRTQFWRQQV-QAPGEAKSDLWQLVQFSRRFKTEEVWP 576
Query: 452 SD-----EEVIRKVLEANRISFEELKKKGFVKIPEGERKWNTPSGKIEFYSQRAV----- 501
D E+ K L + E+ K F E + N S ++ FY Q+ +
Sbjct: 577 EDLLAKKPELRGKTLYEVLYATPEVSK--FPVSELAEDQLNDESRELGFYLQKGLFEEYA 634
Query: 502 --KRG----LSPFPEYKKFKG 516
RG L+PF +Y K +G
Sbjct: 635 WFGRGHGHDLAPFDDYHKARG 655
>sp|P33937|NAPA_ECOLI PERIPLASMIC NITRATE REDUCTASE PRECURSOR >gi|7431435|pir||D64990
probable nitrate reductase (EC 1.7.99.4) - Escherichia
coli (strain K-12) >gi|1788534|gb|AAC75266.1|
(AE000309) probable nitrate reductase 3 [Escherichia
coli K12]
Length = 828
Score = 103 bits (255), Expect = 5e-21
Identities = 137/621 (22%), Positives = 254/621 (40%), Gaps = 123/621 (19%)
Query: 7 RDCYDTCSIISEFRNGKLIV-KGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLI---- 61
R C C ++ + G+++ +G+P+ P+ RG C KG LP+ + KDRL PL+
Sbjct: 47 RFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMKN 106
Query: 62 ----KEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH 117
KEG EF +WD+A ++ EK K +KE G ES+ ++ +G + Y +LF
Sbjct: 107 GKYDKEG-EFTPITWDQAFDVMEEKFKTALKEKGPESIGMFG-SGQWTIWEGYAASKLF- 163
Query: 118 YLNASTIDGGICDRAGQEALKDIYG--TAVGVDP-----EKLKEHKLIVYWGINAFWTNL 170
A I A + G G+D + +++ V WG N +
Sbjct: 164 --KAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGAN--MAEM 219
Query: 171 HGFMFAK-------RNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEEN 223
H ++++ N+ + + + + + +D P +D++ +A +I+ N
Sbjct: 220 HPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNN 279
Query: 224 LYDEDFVRENV----------YG-----------------------FEEFKNYVIKLSLN 250
++DF ++V YG FE++K +V + +L
Sbjct: 280 AINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLE 339
Query: 251 YVSQETGVEVEEIREFAREFAE--KKGIIHIGYGFQRSLAGGEAVRAIAILPALVG---- 304
++ TGV +++ + A+ +A+ KK I + GF + G A + L L G
Sbjct: 340 KTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQ 399
Query: 305 -------------------------HRFGFIYDMKTIDKSY---AEAKF---LRTKP-EL 332
HR DM ++ + E K+ T P ++
Sbjct: 400 PGCGPFSLTGQPSACGTAREVGTFAHRLP--ADMVVTNEKHRDICEKKWNIPSGTIPAKI 457
Query: 333 RIPQMELTEAIEDGRVKFLYIYNSNPLASYPNQNRLR-KALRKNDIFVVTHDIFLTDTAL 391
+ + A++DG++ + +N + + PN N R R F++ D + T +AL
Sbjct: 458 GLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSAL 517
Query: 392 FSDVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNSEVTRLIAKALGIKNPYLYE 451
+D++LP + E+ + R + V + PG++ S++ +L+ + K ++
Sbjct: 518 AADLILPTAMWVEKEGAYGNAERRTQFWRQQV-QAPGEAKSDLWQLVQFSRRFKTEEVWP 576
Query: 452 SD-----EEVIRKVLEANRISFEELKKKGFVKIPEGERKWNTPSGKIEFYSQRAV----- 501
D E+ K L + E+ K F E + N S ++ FY Q+ +
Sbjct: 577 EDLLAKKPELRGKTLYEVLYATPEVSK--FPVSELAEDQLNDESRELGFYLQKGLFEEYA 634
Query: 502 --KRG----LSPFPEYKKFKG 516
RG L+PF +Y K +G
Sbjct: 635 WFGRGHGHDLAPFDDYHKARG 655
>pir||C81298 probable formate dehydrogenase (EC 1.2.1.2) large chain Cj1511c
[similarity] - Campylobacter jejuni (strain NCTC 11168)
Length = 934
Score = 102 bits (253), Expect = 9e-21
Identities = 82/310 (26%), Positives = 144/310 (46%), Gaps = 12/310 (3%)
Query: 9 CYDTCSIISEFRNGKLIVKG-NPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEF 67
C C II+E +NG + + +HP++ G C KG+ + S RLK P+ KE E+
Sbjct: 60 CSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEW 119
Query: 68 NETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID-- 125
S+++A+S + EKL KE ESV+ A YY + + + +D
Sbjct: 120 KRISYEQALSEIGEKLAAYRKE-NPESVMFLGSAKLNNEQAYYI-RKFAAFFGTNNVDHQ 177
Query: 126 GGICDRAGQEALKDIYGTAVGVDP-EKLKEHKLIVYWGINAFWTNLHGF---MFAKRNNL 181
IC A + + +G + ++ K I+ G N + GF + AK
Sbjct: 178 ARICHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGA 237
Query: 182 EIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFK 241
++ VD T++A ++D + ++RP TD+ F G+ K++ +E L D ++ E V+G ++ +
Sbjct: 238 KLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIR 297
Query: 242 NYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEAVRAIAILP 300
K ++ V TG+ E + + E A+ K I G + G R I+
Sbjct: 298 EEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQ 357
Query: 301 ALVGH--RFG 308
++G+ +FG
Sbjct: 358 MVLGNIGKFG 367
>emb|CAA61224.1| (X87971) fdhA2 [Methanobacterium thermoautotrophicum]
Length = 191
Score = 101 bits (250), Expect = 2e-20
Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 3/180 (1%)
Query: 1 MFSACMRDCYDTCSIISEFRNGKL-IVKGNPEHPITRGFLCPKGALLPRW-FHSKDRLKL 58
+F+ C RDC C + G + + GN HP +RGFLC K A R +S R+
Sbjct: 3 VFTTCTRDCPGACGLTVRVEGGVVRSIGGNRGHPHSRGFLCRKTASYHRTRLYSDKRILK 62
Query: 59 PLIKEGDEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHY 118
PL+++G+++ SWD+A+ VA+ + + EYG+ES++ Y+ G R + R F+
Sbjct: 63 PLMRDGNQWRTVSWDEALQTVADVMNRCVDEYGAESIIYYQGFGARTALR-LLNRRFFNS 121
Query: 119 LNASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFMFAKR 178
L A+T++G +C EA K +G V +P + I WG N T+L+ + +R
Sbjct: 122 LGATTLEGTLCGGTAIEAHKMDFGKRVSHEPRDHLNSRNIFIWGRNPAVTDLNLWRIIRR 181
>emb|CAB73932.1| (AL139078) putative formate dehydrogenase large subunit
(Selenocysteine containing) [Campylobacter jejuni]
Length = 934
Score = 100 bits (246), Expect = 6e-20
Identities = 82/318 (25%), Positives = 144/318 (44%), Gaps = 28/318 (8%)
Query: 9 CYDTCSIISEFRNGKLIVKG-NPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEF 67
C C II+E +NG + + +HP++ G C KG+ + S RLK P+ KE E+
Sbjct: 60 CSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEW 119
Query: 68 NETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLNASTID-- 125
S+++A+S + EKL KE ESV+ A YY + + + +D
Sbjct: 120 KRISYEQALSEIGEKLAAYRKE-NPESVMFLGSAKLNNEQAYYI-RKFAAFFGTNNVDHQ 177
Query: 126 ---------GGICDRAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGF--- 173
G+ + G A+ + G ++ K I+ G N + GF
Sbjct: 178 ARIUHSATVAGVANTFGYGAMTNHLGD--------IQRSKCIIIIGANPAVNHPVGFRHF 229
Query: 174 MFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVREN 233
+ AK ++ VD T++A ++D + ++RP TD+ F G+ K++ +E L D ++ E
Sbjct: 230 LKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDER 289
Query: 234 VYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGIIHI-GYGFQRSLAGGEA 292
V+G ++ + K ++ V TG+ E + + E A+ K I G + G
Sbjct: 290 VFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSN 349
Query: 293 VRAIAILPALVGH--RFG 308
R I+ ++G+ +FG
Sbjct: 350 TRLAPIVQMVLGNIGKFG 367
>sp|P54934|BISC_RHOSH BIOTIN SULFOXIDE REDUCTASE (BDS REDUCTASE) (BSO REDUCTASE)
>gi|2126474|pir||S65669 biotin sulfoxide reductase (EC
1.8.4.-) - Rhodobacter sphaeroides
>gi|953224|gb|AAA74739.1| (U08189) biotin sulfoxide
reductase [Rhodobacter sphaeroides]
Length = 744
Score = 97.5 bits (239), Expect = 4e-19
Identities = 152/711 (21%), Positives = 264/711 (36%), Gaps = 155/711 (21%)
Query: 55 RLKLPLIKEG---------------DEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYK 99
R+ P+++EG + F SWD A+ LVA +++ + ++G+ ++
Sbjct: 28 RVMRPMVREGWLADRQHSDRRGRGRERFLPVSWDAALDLVAGEIRRVSADHGNAAIFAGS 87
Query: 100 YA----------------------GDRGVVNYYF----PMRLFHYLNASTIDGGICDRA- 132
Y G G V+ Y P+ L H L GG +
Sbjct: 88 YGWTSCGRFHHASTLLKRMLNLVGGFTGHVDTYSIAAGPVILRHTLGDDRACGGQANTLD 147
Query: 133 ------------GQEALKDIYGTAVGVDPEKLKEH-KLIVYWGINAFWTNLHGFMFAKRN 179
G + + A G+ L+ + + IV G+ + ++
Sbjct: 148 SIAEHSQTLVVFGAMSPRTAQSEAGGIGAHHLETYLRRIVERGVRVILVS------PLKD 201
Query: 180 NLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEE 239
+L W + +++ +RP+TD LG+A ++ D DF+ G E
Sbjct: 202 DLPDWV-----------AAEWWPIRPNTDTALMLGLAGEIVRSGRQDSDFLARCTSGSEL 250
Query: 240 FKNYVI------KLSLNYVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAV 293
+ Y+ + S TG+ E IR A + + ++ + + QR+ G +
Sbjct: 251 YLAYLRGEGDGRPKDAEWASTITGLPAEAIRALAGDLPRTRSMLTVSWSLQRAHHGEQPF 310
Query: 294 RAIAILPALVGH-------------RFGFIYDMKTIDKSYAEAKFLRTK----PELRIPQ 336
A L A++G G + TI KS A ++ + P RI
Sbjct: 311 WAALGLAAVIGQIGRPGGGVGYGYGSLGGVGAPFTIGKSPAMSQLSKPINSFIPVARISD 370
Query: 337 MELTEAI------EDGR---VKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLT 387
M L ED R ++ +Y NP + + NRL +A + + +V +F T
Sbjct: 371 MLLNPGGPYSYEGEDRRYPDIRLVYWSGGNPFHHHQDLNRLSEAWTRPETIIVQDPMF-T 429
Query: 388 DTALFSDVVLPANTFFERLDIVDSYYHRYVL-LNEPVAK-GPGKSNSEVTRLIAKALGIK 445
TA +D+VLPA+T ER D+ + ++L + + +A G +S+ ++ ++ LG+
Sbjct: 430 ATAKRADIVLPASTSIERNDLAGNKRSDFILAMGQAIAPLGEARSDFDIFNALSGKLGVA 489
Query: 446 NPY------------LYESDEEVIRKVLEANRISFEELKKKGFVKIP------------- 480
+ LYE ++ FE +G P
Sbjct: 490 AAFNEGRDEMGWIRHLYEESRNHAQRHHHFEMPDFETFWAQGHAPCPVQRDHTYLAAFRE 549
Query: 481 -EGERKWNTPSGKIEFYSQRAVKRGLS---PFP---EYKKFKGKYP---LRLLSPTYRMT 530
G +T SG I S + G + P P E ++ GK L L+S +
Sbjct: 550 DPGAHPLDTESGLIVLGSATLARLGYADCGPHPAWIEPAEWLGKAQAGELHLISHQPKGR 609
Query: 531 VTSQYHNTHGIIDSN------LYMNPKDAAERGIKDGDEVIVFNENGKIKTKIKLTEDVP 584
+ SQ + + ++P DA+ RGI DG V ++N G ++T+ V
Sbjct: 610 LHSQLETAEASLAGKREGRDEVMLHPDDASVRGIADGQTVRLWNARGACLATAQVTDSVA 669
Query: 585 PGVVLLYKAFWV-------KLLGWNVNFLTTDKKVEKYGKGSAFHSTWVEV 628
GV +L W L N N LT D +G+G + H+ V +
Sbjct: 670 AGVAILPTGAWFTPAEAEGPELSGNPNVLTLDIGSSAFGQGCSAHTCLVRI 720
>emb|CAA03851.1| (AJ000006) nitrate reductase [Shewanella frigidimarina]
Length = 397
Score = 97.5 bits (239), Expect = 4e-19
Identities = 76/295 (25%), Positives = 138/295 (46%), Gaps = 19/295 (6%)
Query: 24 LIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGDEFNETSWDKAISLVAEKL 83
LI+ G+ +HP G LC KG L + L+ P ++ G + WDKA +L+A+
Sbjct: 34 LILVGDNKHPANYGHLCAKGERLLDSLAQPNVLRYPKLRSGMPLD---WDKASTLIADTF 90
Query: 84 KEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFH-YLNASTIDGG--ICDRAGQEALKDI 140
+ I E+G +SV +Y +G +YY + +L + +D +C + A++
Sbjct: 91 AKTIAEHGPDSVALY-LSGQLLTEDYYVANKFAKGFLKTANVDTNSRLCMSSAVSAMQRA 149
Query: 141 YGTAVGVDP-EKLKEHKLIVYWGINAFWTNLHGFMFA------KRNNLEIWTVDVVRTET 193
+G V + L++ +IV G N WT H +F K NN ++ +D + T T
Sbjct: 150 FGEDVVPGCYDDLEQADVIVLVGANTAWT--HPVLFQRILAAIKANNAQLVVIDPLSTAT 207
Query: 194 AKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLNY-- 251
AK++D ++P D+ G+ + ++N D ++ + GF+ +LS N
Sbjct: 208 AKQADLHLAIKPGADLTLFHGLLGYLADQNRVDHAYIAAHTEGFDTVVLQAQQLSANLAD 267
Query: 252 VSQETGVEVEEIREFAREFAEKKGIIHIG-YGFQRSLAGGEAVRAIAILPALVGH 305
++ + GV V ++ +F + A K ++ G +S G +A A+ +GH
Sbjct: 268 LATQVGVSVTQLTQFYQLVANNKKVLTASCQGVNQSTIGTDATNAMINCHLALGH 322
>pir||B70838 hypothetical protein Rv0197 - Mycobacterium tuberculosis (strain
H37RV) >gi|2909595|emb|CAA17319.1| (AL021928)
hypothetical protein Rv0197 [Mycobacterium tuberculosis]
Length = 762
Score = 93.6 bits (229), Expect = 6e-18
Identities = 97/429 (22%), Positives = 181/429 (41%), Gaps = 36/429 (8%)
Query: 3 SACMRDCYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLI 61
+AC+ C C I+ + + +L ++G+ HP + G+ C K L + +++ RL P+
Sbjct: 9 TACIL-CECNCGIVVQVDDRRLARIRGDKAHPGSAGYTCNKALRLDHYQNNRARLSSPMR 67
Query: 62 KEGD-EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYLN 120
+ D + E WD AI +AE K++ +G + + Y G + + L
Sbjct: 68 RRADGTYEEIDWDTAIVEIAEGFKQIRDTHGGDKIFYYGGGGQGNHLGGAYSGAFLKALG 127
Query: 121 ASTIDGGICDRAGQEALKD--IYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHGFM---- 174
+ + EA D +YG G + + ++ V+ G N + +
Sbjct: 128 SRYRSNALAQEKTGEAWVDFQLYG---GHTRGEFENAEVSVFVGKNPWMSQSFPRARVVL 184
Query: 175 --FAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRE 232
AK + +D V T+TAK +D +V+P D +A V+++ENL +E F+
Sbjct: 185 NEIAKDPGRSMIVIDPVVTDTAKMADFHLRVQPGCDAWCLAALAAVLVQENLCNEAFLAA 244
Query: 233 NVYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAEKKGI-IHIGYGFQRS----- 286
+V+G + + + ++ + +Q GV+ E +R AR + + G Q++
Sbjct: 245 HVHGVDTVRAALQEVPVADYAQRCGVDEELLRAAARRIGTAASVSVFEDLGIQQAPNSTV 304
Query: 287 ----------LAGGEAVRAIAILPALVGHRFGFIYDMKTIDKSYAEAKFLRTKPELRIPQ 336
L G A + L + F + + + A + P +P+
Sbjct: 305 CSYLNKLLWILTGNFAKKGGQHLHSSFAPLFSQVSGRTPVTGAPIIAGLI---PGNVVPE 361
Query: 337 MELTEAIEDGRVKFLYIYNSNPLASYPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVV 396
LTE R + + + NP S + R A + ++ VV D+ +T+TA + V
Sbjct: 362 EILTE--HPDRFRAMIVERGNPAHSLADSAACRAAFQALELMVVV-DVAMTETARLAHYV 418
Query: 397 LPANTFFER 405
LPA + FE+
Sbjct: 419 LPAASQFEK 427
>gi|11497793 molybdopterin oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus] >gi|7483879|pir||H69271
molybdopterin oxidoreductase, molybdopterin binding
subunit homolog - Archaeoglobus fulgidus
>gi|2650469|gb|AAB91056.1| (AE001094) molybdopterin
oxidoreductase, molybdopterin binding subunit
[Archaeoglobus fulgidus]
Length = 896
Score = 93.2 bits (228), Expect = 8e-18
Identities = 75/280 (26%), Positives = 123/280 (43%), Gaps = 26/280 (9%)
Query: 3 SACMRDCYDTCSIISEFRNGK---LIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLP 59
S C +C C + NG+ L + P C +G + + DRLK P
Sbjct: 44 SVCSPNCTGACGFDALVYNGRIETLTQAADYPEPEYNPRGCLRGQSMMNLIYGPDRLKRP 103
Query: 60 LIKEGD----EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRL 115
LI+ G +F SWD+A+ VA++L +++K +G ESV + G V+ MRL
Sbjct: 104 LIRVGKRGEGKFKAVSWDEALDYVADRLADIMKRHGPESVAISIQVPGTGYVHKGAMMRL 163
Query: 116 FHYLNASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKE-----HKLIVYWGINAFWTNL 170
S + G + L + GV E+ + K I +G N T L
Sbjct: 164 ASMFGWSALHGYTMNGD----LPAFWSQTFGVQTEEFESLEWTNSKYIAIFGSNIMVTRL 219
Query: 171 HGFMF---AKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDE 227
F A ++ VD + TA ++D++ Q+ P TD FAL +A+ +IE LYDE
Sbjct: 220 PDAKFVNIAAERGAKVVVVDPNFSPTAAKADEWVQINPSTDSAFALAIAREIIENRLYDE 279
Query: 228 DFVRENVYGFEEFKNYVIKLSLNYVSQETGVEVEEIREFA 267
+F++ + + + + ++ + EV+E+ E A
Sbjct: 280 EFIK-------TYTDMPLLVRMDTQKRLMAKEVKELEEIA 312
>pir||D82430 periplasmic nitrate reductase VCA0678 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658095|gb|AAF96578.1|
(AE004397) periplasmic nitrate reductase [Vibrio
cholerae]
Length = 829
Score = 90.9 bits (222), Expect = 4e-17
Identities = 134/604 (22%), Positives = 245/604 (40%), Gaps = 112/604 (18%)
Query: 7 RDCYDTCSIISEFRNGKLIV-KGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKEGD 65
R C CS++ ++G+++ +G+PE P+ +G C KG L + + +DRLK PL++ D
Sbjct: 49 RFCGTGCSVLVGTQDGRVVATQGDPEAPVNKGLNCIKGYFLSKIMYGQDRLKTPLLRMKD 108
Query: 66 -------EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHY 118
EF SWD A ++AEK K +K G SV ++ +G V+ Y ++L
Sbjct: 109 GQYHKDGEFTPVSWDTAFDVMAEKWKASLKTKGPTSVGMFG-SGQWTVMEGYAAVKL--- 164
Query: 119 LNASTIDGGICDRAGQEALKDIYG--TAVGVDP-----EKLKEHKLIVYWGIN------A 165
+ A I A + G G+D + + V WG N
Sbjct: 165 MKAGFRSNNIDPNARHCMASAVVGFMRTFGIDEPMGCYDDFEHADAFVLWGSNMAEMHPV 224
Query: 166 FWTNLHGFMFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLY 225
WT + + ++++ + + + +D + P +D+ A +A +I+ +
Sbjct: 225 LWTRITDRRLS-HPHVKVNVLSTYYHRSFELADHGYIFHPQSDLAIANFIANYIIQNDAV 283
Query: 226 DEDFVRENVY---------------------------------GFEEFKNYVIKLSLNYV 252
+ DFV ++ + FEE+K V ++
Sbjct: 284 NWDFVNKHTHFKQAVTDIGYGLRDDHPLQKKAKNANSGDVSDISFEEYKKSVAPYTVEKA 343
Query: 253 SQETGVEVEEIREFAREFAE----------------KKGI--------IHIGYG------ 282
S+ +GV +++ A+++A+ +G+ +H+ G
Sbjct: 344 SEISGVSPDKLITLAKQYADPNTKVMSLWTMGMNQHTRGVWMQSLVYNLHLLTGKIATPG 403
Query: 283 -FQRSLAGGEAVRAIAILPALVGHRFGFIYDMKTID-KSYAEAKFLRTKPELRIPQ---- 336
SL G + A HR DM + K A A+ + PE IP+
Sbjct: 404 NSPFSLTGQPSACGTAREVGTFAHRLP--ADMVVANPKHRAIAEKVWKLPEGTIPEKPGF 461
Query: 337 --MELTEAIEDGRVKFLYIYNSNPLASYPNQNRLR-KALRKNDIFVVTHDIFLTDTALFS 393
++ ++DG + ++ +N + + PN N R R + F+V D + T TA +
Sbjct: 462 HAVQQDRMLKDGVLNCYWVQCNNNMQAGPNINEERLPGYRNPENFIVVSDAYPTVTAQAA 521
Query: 394 DVVLPANTFFERLDIVDSYYHRYVLLNEPVAKGPGKSNSEVTRLIAKALGIKNPYLYESD 453
D+VLP + E+ + R + + V K G+S+S+ ++I + K ++
Sbjct: 522 DLVLPTAMWVEKEGAYGNAERRTQVWYQQV-KTVGESHSDSWQVIEFSKRFKVEDVW--P 578
Query: 454 EEVIRKVLE-ANRISFEELKKKGFV-KIPEGE-RKWNTPSGKIEFYSQRAVKRGLSPFPE 510
EE++ K + + ++ L K G V K P E R+ N + FY Q+ + F E
Sbjct: 579 EELLAKAPQYRGKTLYDVLFKNGQVDKFPLSEARELNDDAHHFGFYIQKGL------FEE 632
Query: 511 YKKF 514
Y +F
Sbjct: 633 YAEF 636
>gb|AAG19284.1| (AE005024) dimethylsulfoxide reductase; DmsA [Halobacterium sp.
NRC-1]
Length = 837
Score = 90.5 bits (221), Expect = 5e-17
Identities = 113/426 (26%), Positives = 189/426 (43%), Gaps = 49/426 (11%)
Query: 252 VSQETGVEVEEIREFAREFAEK-KGIIHIGYGFQRSLAGGEAVRAIAILPALVGH--RFG 308
V+ G+ +I A A + G I YG R L G + A L AL G R G
Sbjct: 392 VADTAGLAAADIETAADWLATRGPGGIMPSYGVGRYLYGHVFGQTYATLLALTGDYGRHG 451
Query: 309 FIYDMK-TIDKSYAE---------AKFLRTKPELRIPQMELTEAIEDGRVKFLYIYNSNP 358
I+ + D SY E A + T R+ ++L + + KF+Y NSN
Sbjct: 452 NIHAQHPSYDGSYLETGDWNDPDGAAGVDTYGYNRV--LDLLANGDPVQTKFMYGMNSNM 509
Query: 359 LAS-YPNQNRLRKALRKNDIFVVTHDIFLTDTALFSDVVLPANTFFERLDIVDSYYHRYV 417
L + +P ++R A+ D VV DI+ T T +D++LPA +FE D++ +Y H
Sbjct: 510 LGNQFPERDRWLDAMSNLDT-VVWADIYHTPTTRQADIILPAAHWFETEDLLTTYTHPN- 567
Query: 418 LLNEPVAKGP---GKSNSEVTRLIAKALGIKNPYLYESDEEVIRKVLEANRISFEELKKK 474
L A P + + + +A+ LG + + + + + R V +R+S++ L++
Sbjct: 568 LSYRTKAHDPLWEARDDYYIMAGLAQRLGHGDKFPDDKHDVLDRFVKNDDRLSWDALRET 627
Query: 475 GFVKIPEGER-----KWNTPSGKIEFYSQRA-VKRGLS----------PFPEYKK----- 513
G V E ++ T SG+I Y A V+ G + P P +
Sbjct: 628 GTVATDETPTVAYTDEFGTESGRITVYDDDAPVEEGPALPDDGVSLEVPKPLEARTADDW 687
Query: 514 -FKGKYPLRLLSPTYRMTVTSQYHNTHGIIDSN----LYMNPKDAAERGIKDGDEVIVFN 568
+YPL + + + SQ+ N + + N L ++PKDA RGI DG+ V V N
Sbjct: 688 AHADEYPLLFMQKHSKWRIHSQWANVPWLREINTEPQLDIHPKDATRRGIDDGEYVRVHN 747
Query: 569 ENGKIKTKIKLTEDVPPGVVLLYKAFWVK-LLGWNVNFLTTDKKVEKYGKGSAFHSTWVE 627
+ G + + K + + PG+V + +W + + ++ L + + K G+ AF+ VE
Sbjct: 748 DRGSVVVRAKYNDGIQPGLVNTDQGWWARDFVDGHLQDLIS-AETAKVGRTFAFYDCRVE 806
Query: 628 VIRCGE 633
V R +
Sbjct: 807 VTRAAD 812
Score = 78.8 bits (191), Expect = 2e-13
Identities = 66/253 (26%), Positives = 110/253 (43%), Gaps = 26/253 (10%)
Query: 3 SACMRDCYDTCSIISEFRNGKLIVKGNPEHPITRGFL--CPKGALLPRWFHSKDRLKLPL 60
+AC +C C + R+G+ I K + P + F C G + ++ DRLK P+
Sbjct: 58 TACSPNCRGKCPLDVFVRDGQ-IKKVEQQVPAAKTFKRGCTLGMTHLQRVYNADRLKYPM 116
Query: 61 IKEG--------------DEFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGV 106
+ +F +WD A+ LVA+ ++ +EYG S+L + +GD G+
Sbjct: 117 KRTSWSPDDPQPDQRGADAQFERIAWDDALDLVADGIQRAKREYGPRSLLWHSGSGDGGI 176
Query: 107 VNYYFPMRLFHYLNASTIDGGICDRAGQEALKDIYGTAVGVDPEKLKEH----KLIVYWG 162
Y L L GI GQ + V + P + + I+ WG
Sbjct: 177 TGYRRLKELVGGLQ-DDFTYGIDTNVGQGFNRVTGEGGVFMPPTNTADDWVNAETIIIWG 235
Query: 163 INAFWTNLH----GFMFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKV 218
+ F + + AKRN ++ VD V T TA+++D + ++P D AL + +
Sbjct: 236 SDIFASQFQMDAEWILDAKRNGAKLVVVDPVYTNTAEKADLWLPIKPGKDTHLALAMMQY 295
Query: 219 MIEENLYDEDFVR 231
+ E + YDE F+R
Sbjct: 296 IFEHDHYDEAFLR 308
>pir||E70406 DMSO reductase chain A - Aquifex aeolicus
>gi|2983678|gb|AAC07243.1| (AE000730) DMSO reductase
chain A [Aquifex aeolicus]
Length = 984
Score = 78.4 bits (190), Expect = 2e-13
Identities = 69/240 (28%), Positives = 113/240 (46%), Gaps = 13/240 (5%)
Query: 2 FSACMRDCYDTCSIISEFRNGKLI-VKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPL 60
+S C C C I RNGK+ +KGN +HP+ +G LC KG+ +S RL+ PL
Sbjct: 48 YSTCYM-CACRCGIEVYVRNGKVTYIKGNDDHPLNKGVLCAKGSSGIMKEYSPARLRKPL 106
Query: 61 IKEGD----EFNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLF 116
++ G +F E WD+A+ + A+ +KE ++ S+ V + +N +F ++
Sbjct: 107 LRVGPRGSGQFKEIEWDEALEIAAKWIKEAAQKNPSK-VAFFTGRDQMQAINGWFAGQI- 164
Query: 117 HYLNASTIDGGICD----RAGQEALKDIYGTAVGVDPEKLKEHKLIVYWGINAFWTNLHG 172
LN + GG C AG ++ + D E K +I +A G
Sbjct: 165 GTLNWAA-HGGFCSVNVAAAGLMSVGYSFWEFGDPDFEHTKYFMMIGVAEDHASNPFKLG 223
Query: 173 FMFAKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRE 232
KR + V+ VR +D++ ++P TD F LG+A V+ + NL D +F++E
Sbjct: 224 IQELKRRGGKFVFVNPVRWSYGAIADEWVPIKPGTDGAFILGLAHVLFKYNLIDWEFLKE 283
>gb|AAK41791.1| Molybdopterin oxidoreductase, molybdopterin binding subunit
[Sulfolobus solfataricus]
Length = 1050
Score = 74.5 bits (180), Expect = 3e-12
Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 25/244 (10%)
Query: 9 CYDTCSII--SEFRNG---KLIVKGNPEHPITRGFLCPKGALLPRWFHSKDRLKLPLIKE 63
C TC I+ +E+ NG L + GNP P+ G +CP+G ++ DRLK PLI+
Sbjct: 73 CSSTCDILVETEYINGYMRALEIDGNPLSPLNEGKVCPRGRAGIFRTYNVDRLKTPLIRT 132
Query: 64 GDE----FNETSWDKAISLVAEKLKEMIKEYGSESVLVYKYAGDRGVVNYYFPMRLFHYL 119
G + F E +W++ I+ + + +K++ + E +L+ Y+ P L +
Sbjct: 133 GPKGTWSFREATWEETINYIMQNIKQLNPQ-PYEFLLIGGGIPCANYKPYFIPFTLGTQI 191
Query: 120 -NASTIDGGICDRAGQEALKDIYGTAVGVD------PEKLKEHKLIVYWGINAFWTNL-- 170
N + C + Q + + G G D + + LIV WG + +
Sbjct: 192 PNINGTPMQTCLFSDQVPIGFVIG---GFDLHATDMMDDMTYSSLIVAWGTSGIPAGIFV 248
Query: 171 -HGFMFAK--RNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDE 227
+AK N + +D +E A +++ + +P +D+ A+ + +I+ N YD+
Sbjct: 249 NRAIRYAKGIENGAYVIAIDPRMSEAASKANLWIPAKPGSDLYIAMAIINYLIQNNYYDD 308
Query: 228 DFVR 231
+FVR
Sbjct: 309 EFVR 312
>emb|CAA38512.1| (X54696) formate dehydrogenase H [Enterobacter aerogenes]
Length = 241
Score = 73.0 bits (176), Expect = 1e-11
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 176 AKRNNLEIWTVDVVRTETAKRSDKFFQVRPDTDVLFALGVAKVMIEENLYDEDFVRENVY 235
AKRN +I D + ETA+ +D ++ +++ + V+IEE+LYD+ FV
Sbjct: 59 AKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAIGHVIIEEDLYDKSFVASRSE 118
Query: 236 GFEEFKNYVIKLSLNYVSQETGVEVEEIREFAREFAE-KKGIIHIGYGFQRSLAGGEAVR 294
GFEE++ V + V + TGV +EIR AR +A K I G G + G E VR
Sbjct: 119 GFEEYRKIVEGYTPESVEEITGVSAQEIRACARMYASAKSAAILWGMGVTQFYQGVETVR 178
Query: 295 AIAILPALVGH 305
++ L L G+
Sbjct: 179 SLTSLAILTGN 189
>dbj|BAA15689.1| (D90830) Biotin sulfoxide reductase 2 (EC 1.-.-.-) (BDS reductase
2) (BSO reductase 2). [Escherichia coli]
Length = 458
Score = 71.8 bits (173), Expect = 2e-11
Identities = 68/310 (21%), Positives = 132/310 (41%), Gaps = 49/310 (15%)
Query: 51 HSKDRLKLPLIKEG--------------DEFNETSWDKAISLVAEKLKEMIKEYGSESVL 96
H+ R++ P++++ D + + SW++A+ L+ E+ + K G ++
Sbjct: 80 HTTARIQHPMVRKSYLDNPLQPAKGRGEDTYVQVSWEQALKLIHEQHDRIRKANGPSAIF 139
Query: 97 VYKYAGDRGVVNYYFPMRLFHYLNA----STIDGGICDRAGQEALKDIYGTAVGVD---- 148
Y V + L Y+N S G A Q + + G+ +
Sbjct: 140 AGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGDYSTGAAQVIMPHVVGSVEVYEQQTS 199
Query: 149 -PEKLKEHKLIVYWGINAF------WTN-----LHGFMFAKRNNLEIWTVDVVRTETAKR 196
P L+ +++V WG+N W++ L F K++ + +D +R+ET +
Sbjct: 200 WPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEF 259
Query: 197 -SDKFFQVRPD--TDVLFALGVAKVMIEENLYDEDFVRENVYGFEEFKNYVIKLSLN--- 250
D + P+ TDV LG+A ++ + +D+ F+ + G+ +F+ Y+ S N
Sbjct: 260 FDDNATWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLTGKSDNTPK 319
Query: 251 ---YVSQETGVEVEEIREFAREFAEKKGIIHIGYGFQRSLAGGEAVRAIAILPALVGH-- 305
+ ++ TGV +I + A A + ++ G+G QR G + + L A++G
Sbjct: 320 SAVWAAEITGVPEAQIVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIG 379
Query: 306 ----RFGFIY 311
FGF Y
Sbjct: 380 TPGGGFGFSY 389
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.416
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252678926
Number of Sequences: 2977
Number of extensions: 11392465
Number of successful extensions: 32427
Number of sequences better than 1.0e-10: 109
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 31936
Number of HSP's gapped (non-prelim): 243
length of query: 637
length of database: 189,106,746
effective HSP length: 55
effective length of query: 582
effective length of database: 156,189,961
effective search space: 90902557302
effective search space used: 90902557302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 168 (69.9 bits)