BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0535 (PAB0535) DE:Hypothetical protein
         (152 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75123 hypothetical protein PAB0535 - Pyrococcus abyssi (st...   298  2e-80
pir||H71007 hypothetical protein PH1358 - Pyrococcus horikoshii ...   210  5e-54

>pir||G75123 hypothetical protein PAB0535 - Pyrococcus abyssi (strain Orsay)
           >gi|5458215|emb|CAB49704.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 152
           
 Score =  298 bits (755), Expect = 2e-80
 Identities = 152/152 (100%), Positives = 152/152 (100%)

Query: 1   MLYEESVSSKLLNLVLLVTLLPIIILAVYLRNQPYALKILAIEGIIVSIIVLEASAIRIL 60
           MLYEESVSSKLLNLVLLVTLLPIIILAVYLRNQPYALKILAIEGIIVSIIVLEASAIRIL
Sbjct: 1   MLYEESVSSKLLNLVLLVTLLPIIILAVYLRNQPYALKILAIEGIIVSIIVLEASAIRIL 60

Query: 61  IDDDGIRIRGRLGLFLRKTIRLEEIEWYSVSHGWMSCQYRSLILHFSIPAKGCVLIKRKK 120
           IDDDGIRIRGRLGLFLRKTIRLEEIEWYSVSHGWMSCQYRSLILHFSIPAKGCVLIKRKK
Sbjct: 61  IDDDGIRIRGRLGLFLRKTIRLEEIEWYSVSHGWMSCQYRSLILHFSIPAKGCVLIKRKK 120

Query: 121 GMNVSFSTNNPEEVSKVLSMLGIPKVPYNKVF 152
           GMNVSFSTNNPEEVSKVLSMLGIPKVPYNKVF
Sbjct: 121 GMNVSFSTNNPEEVSKVLSMLGIPKVPYNKVF 152


>pir||H71007 hypothetical protein PH1358 - Pyrococcus horikoshii
           >gi|3257781|dbj|BAA30464.1| (AP000006) 148aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 148
           
 Score =  210 bits (530), Expect = 5e-54
 Identities = 98/146 (67%), Positives = 125/146 (85%)

Query: 1   MLYEESVSSKLLNLVLLVTLLPIIILAVYLRNQPYALKILAIEGIIVSIIVLEASAIRIL 60
           MLYEE VSS+LLNL+L + LLPI++L + LRNQP ALKIL IE ++VSII+++ASAI+I 
Sbjct: 1   MLYEEVVSSRLLNLILGIVLLPILVLMIALRNQPEALKILGIEALVVSIILMDASAIKIT 60

Query: 61  IDDDGIRIRGRLGLFLRKTIRLEEIEWYSVSHGWMSCQYRSLILHFSIPAKGCVLIKRKK 120
           ID++ IRIRGRLG+ LRKT+R+EEIE YS+   WMSCQ R  ILHF++PAKGC+L+KR+K
Sbjct: 61  IDEESIRIRGRLGILLRKTVRIEEIEGYSIGKHWMSCQSRGAILHFTVPAKGCILLKRRK 120

Query: 121 GMNVSFSTNNPEEVSKVLSMLGIPKV 146
           G+ VSFSTNNPEEV  +LSMLG+PK+
Sbjct: 121 GITVSFSTNNPEEVGNILSMLGVPKI 146


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.143    0.409 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50214015
Number of Sequences: 2977
Number of extensions: 1774825
Number of successful extensions: 5325
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5323
Number of HSP's gapped (non-prelim): 2
length of query: 152
length of database: 189,106,746
effective HSP length: 52
effective length of query: 100
effective length of database: 157,985,422
effective search space: 15798542200
effective search space used: 15798542200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)