BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0547 (PAB0547) DE:Hypothetical protein
(337 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75125 hypothetical protein PAB0547 - Pyrococcus abyssi (st... 685 0.0
pir||F71006 hypothetical protein PH1348 - Pyrococcus horikoshii ... 606 e-172
sp|Q57600|Y136_METJA HYPOTHETICAL PROTEIN MJ0136 >gi|2127996|pir... 321 7e-87
gi|11497733 conserved hypothetical protein [Archaeoglobus fulgid... 304 1e-81
pir||D69027 conserved hypothetical protein MTH1201 - Methanobact... 303 1e-81
gb|AAK40581.1| Conserved hypothetical protein [Sulfolobus solfat... 299 3e-80
gb|AAK40582.1| Conserved hypothetical protein [Sulfolobus solfat... 220 1e-56
pir||A71139 hypothetical protein PH0324 - Pyrococcus horikoshii ... 191 8e-48
pir||F75012 hypothetical protein PAB1272 - Pyrococcus abyssi (st... 188 7e-47
sp|P14027|YRP8_METVA HYPOTHETICAL 26.3 KD PROTEIN IN RPS10 3'REG... 184 1e-45
gi|11497872 conserved hypothetical protein [Archaeoglobus fulgid... 154 1e-36
pir||QQMX3 hypothetical protein 3 - Methanococcus vannielii >gi|... 91 1e-17
pir||QQMX4 hypothetical protein 4 - Methanococcus vannielii >gi|... 78 2e-13
>pir||B75125 hypothetical protein PAB0547 - Pyrococcus abyssi (strain Orsay)
>gi|5458226|emb|CAB49715.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 337
Score = 685 bits (1748), Expect = 0.0
Identities = 337/337 (100%), Positives = 337/337 (100%)
Query: 1 MVKIVVRIATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKYFPVADYFLVGKYPED 60
MVKIVVRIATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKYFPVADYFLVGKYPED
Sbjct: 1 MVKIVVRIATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKYFPVADYFLVGKYPED 60
Query: 61 ELLELNAVVIPTGSFVAHLGVELVERMKVPYFGNKRVLKWESDRNLERKWLEKAKLKLPR 120
ELLELNAVVIPTGSFVAHLGVELVERMKVPYFGNKRVLKWESDRNLERKWLEKAKLKLPR
Sbjct: 61 ELLELNAVVIPTGSFVAHLGVELVERMKVPYFGNKRVLKWESDRNLERKWLEKAKLKLPR 120
Query: 121 VYDDPDDIDRPVIVKPHGAKGGRGYFIAKDPQDFWTKVEKFLGIKDKEDLKNVQIQEYVI 180
VYDDPDDIDRPVIVKPHGAKGGRGYFIAKDPQDFWTKVEKFLGIKDKEDLKNVQIQEYVI
Sbjct: 121 VYDDPDDIDRPVIVKPHGAKGGRGYFIAKDPQDFWTKVEKFLGIKDKEDLKNVQIQEYVI 180
Query: 181 GVPVYPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELELDITYTVIGNIPLVL 240
GVPVYPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELELDITYTVIGNIPLVL
Sbjct: 181 GVPVYPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELELDITYTVIGNIPLVL 240
Query: 241 RESLLMDVIEAGERTVKAAEELMGGLWGPFCLEGVFTPDLDFVVFEISARIVAGTNPFIN 300
RESLLMDVIEAGERTVKAAEELMGGLWGPFCLEGVFTPDLDFVVFEISARIVAGTNPFIN
Sbjct: 241 RESLLMDVIEAGERTVKAAEELMGGLWGPFCLEGVFTPDLDFVVFEISARIVAGTNPFIN 300
Query: 301 GSPYTWLKYDEPMSTGRRIAREIRLAIEEDKLDEVVS 337
GSPYTWLKYDEPMSTGRRIAREIRLAIEEDKLDEVVS
Sbjct: 301 GSPYTWLKYDEPMSTGRRIAREIRLAIEEDKLDEVVS 337
>pir||F71006 hypothetical protein PH1348 - Pyrococcus horikoshii
>gi|3257771|dbj|BAA30454.1| (AP000006) 333aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 333
Score = 606 bits (1545), Expect = e-172
Identities = 289/333 (86%), Positives = 316/333 (94%)
Query: 5 VVRIATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKYFPVADYFLVGKYPEDELLE 64
+VRIATYASHSALQILKGAKDEGF TIAFG RVK LYTKYFPVADYFL G YPED+LLE
Sbjct: 1 MVRIATYASHSALQILKGAKDEGFGTIAFGKPRVKLLYTKYFPVADYFLEGDYPEDKLLE 60
Query: 65 LNAVVIPTGSFVAHLGVELVERMKVPYFGNKRVLKWESDRNLERKWLEKAKLKLPRVYDD 124
L+AVVIPTGSF+AHLGVELVE+M+VPYFGNK VLKWESDR+LERKWLEKAKL LPR+Y+D
Sbjct: 61 LDAVVIPTGSFIAHLGVELVEKMRVPYFGNKEVLKWESDRSLERKWLEKAKLTLPRIYED 120
Query: 125 PDDIDRPVIVKPHGAKGGRGYFIAKDPQDFWTKVEKFLGIKDKEDLKNVQIQEYVIGVPV 184
PDDIDRPVIVKPHGAKGGRGYFIAK +DFW K EKFLGI+ KEDLKNVQIQEYV+GVP+
Sbjct: 121 PDDIDRPVIVKPHGAKGGRGYFIAKSSKDFWEKAEKFLGIRSKEDLKNVQIQEYVVGVPI 180
Query: 185 YPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELELDITYTVIGNIPLVLRESL 244
YPHYFYSK+T ELELMSIDRRYESNVDAIGRIPS++QL+L+LD+TYTV+GNIPLVLRESL
Sbjct: 181 YPHYFYSKITGELELMSIDRRYESNVDAIGRIPSREQLDLDLDVTYTVVGNIPLVLRESL 240
Query: 245 LMDVIEAGERTVKAAEELMGGLWGPFCLEGVFTPDLDFVVFEISARIVAGTNPFINGSPY 304
LMDVIEAGER VKA+EELMGGLWGPFCLEGVFTPD++FVVFEISARIVAGTN FINGSPY
Sbjct: 241 LMDVIEAGERVVKASEELMGGLWGPFCLEGVFTPDMEFVVFEISARIVAGTNLFINGSPY 300
Query: 305 TWLKYDEPMSTGRRIAREIRLAIEEDKLDEVVS 337
TWLKYDEPMSTGRRIAREI++AIEE KL+EVV+
Sbjct: 301 TWLKYDEPMSTGRRIAREIKIAIEEGKLEEVVT 333
>sp|Q57600|Y136_METJA HYPOTHETICAL PROTEIN MJ0136 >gi|2127996|pir||H64316 conserved
hypothetical protein MJ0136 - Methanococcus jannaschii
>gi|1498904|gb|AAB98117.1| (U67470) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 361
Score = 321 bits (814), Expect = 7e-87
Identities = 165/344 (47%), Positives = 241/344 (69%), Gaps = 13/344 (3%)
Query: 6 VRIATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKYFPVADYFLV--------GKY 57
+ IAT SH++L ILKGAK EGF T+ + + + + K F VAD F+ +
Sbjct: 19 ITIATLGSHTSLHILKGAKLEGFSTVCI-TMKGRDVPYKRFKVADKFIYVDNFSDIKNEE 77
Query: 58 PEDELLELNAVVIPTGSFVAHLGVELVER-MKVPYFGNKRVLKWESDRNLERKWLEKAKL 116
+++L ELN++V+P GSF+A+ G++ VE VP FGN+R+L+WES+R+LE K L +A L
Sbjct: 78 IQEKLRELNSIVVPHGSFIAYCGLDNVENSFLVPMFGNRRILRWESERSLEGKLLREAGL 137
Query: 117 KLPRVYDDPDDIDRPVIVKPHGAKGGRGYFIAKDPQDFWTKVE--KFLGIKDKEDLKNVQ 174
++P+ Y+ P+DID VIVK GA+GGRGYFIA ++F+ K E K GI ED+ N
Sbjct: 138 RVPKKYESPEDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAH 197
Query: 175 IQEYVIGVPVYPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELELDITYTVIG 234
I+EYV+G HYFYS L E+EL+ +D+RYESN+D + RIP+KDQLE+ ++ +Y + G
Sbjct: 198 IEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITG 257
Query: 235 NIPLVLRESLLMDVIEAGERTVKAAEELM-GGLWGPFCLEGVFTPDLDFVVFEISARIVA 293
NIP+V+RESLL V E G++ V A+EL+ G+ GPFCL+ + +L+ VVFE+SAR+
Sbjct: 258 NIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSARVDG 317
Query: 294 GTNPFINGSPYTWLKYDEPMSTGRRIAREIRLAIEEDKLDEVVS 337
GTN F+NG PY++L EP+S G+RIAREI++A++ D +D+++S
Sbjct: 318 GTNSFMNGGPYSFLYNGEPLSMGQRIAREIKMALQLDMIDKIIS 361
>gi|11497733 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429227|pir||A69264 conserved hypothetical protein
AF0113 - Archaeoglobus fulgidus
>gi|2650530|gb|AAB91114.1| (AE001098) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 359
Score = 304 bits (770), Expect = 1e-81
Identities = 157/345 (45%), Positives = 233/345 (67%), Gaps = 14/345 (4%)
Query: 3 KIVVRIATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKYFPVADYF--------LV 54
K + I T SHSAL ILKGAKDEGF T+ ER K +Y F VAD F L+
Sbjct: 17 KANIHIGTIGSHSALNILKGAKDEGFSTVCICREREKKVYES-FGVADKFVIVSDYSDLL 75
Query: 55 GKYPEDELLELNAVVIPTGSFVAHLGVELVERMKVPYFGNKRVLKWESDRNLERKWLEKA 114
+ ++EL LN ++IP GSF A++G + + +P FGN+ ++ WE+DR+ +R+WLE++
Sbjct: 76 DENIQEELRHLNTILIPHGSFNAYIGK--FDSLLLPMFGNRELMIWETDRDRQREWLERS 133
Query: 115 KLKLPRVYDDPDDIDRPVIVKPHGAKGGRGYFIAKDPQDFWTKVEKFL--GIKDKEDLKN 172
+++P+ Y P++I+ IVK GAKGG+GYFI P++F+ ++ + G+ +ED+KN
Sbjct: 134 GVRMPKKYSRPEEIEGLAIVKYPGAKGGKGYFIVSSPEEFYEISDEMVKKGLIGEEDIKN 193
Query: 173 VQIQEYVIGVPVYPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELELDITYTV 232
+IQEY++G +Y +FYS + +EL+++DRRYES DA+G++P+K+Q+ ++ TYTV
Sbjct: 194 AEIQEYILGANIYFSFFYSPVYGRVELIAVDRRYESTADALGKVPAKEQIRANINPTYTV 253
Query: 233 IGNIPLVLRESLLMDVIEAGERTVKAAEEL-MGGLWGPFCLEGVFTPDLDFVVFEISARI 291
IGN P+VLRESLL+ EA E V+ ++E+ G+ G FC+E +F + VFEISARI
Sbjct: 254 IGNFPVVLRESLLVQAFEAAEGIVEVSKEIAYPGMVGAFCIESIFDENALMYVFEISARI 313
Query: 292 VAGTNPFINGSPYTWLKYDEPMSTGRRIAREIRLAIEEDKLDEVV 336
VAGTN I SPY+++ + E M GRRIAREI+LA E+D L E++
Sbjct: 314 VAGTNVGIPTSPYSYILFGENMYMGRRIAREIKLAAEKDMLGELI 358
>pir||D69027 conserved hypothetical protein MTH1201 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622310|gb|AAB85690.1| (AE000888) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 377
Score = 303 bits (769), Expect = 1e-81
Identities = 155/344 (45%), Positives = 239/344 (69%), Gaps = 13/344 (3%)
Query: 6 VRIATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKYFPVADYFL-VGKYPE----- 59
+ +AT SH++L IL GAK EGF+T A E+ + + + F VAD F+ V K+ +
Sbjct: 35 ITVATLGSHTSLHILNGAKQEGFKT-AVVCEKGREVPYQRFRVADEFIMVDKFSDIVNDD 93
Query: 60 --DELLELNAVVIPTGSFVAHLGVELVER-MKVPYFGNKRVLKWESDRNLERKWLEKAKL 116
DEL +N++++P GSFVA+ G++ +E VP FGN+ +L+WES+R+LERK +E+A +
Sbjct: 94 VQDELRSMNSIIVPHGSFVAYAGLDHIENDFYVPMFGNRDILRWESERDLERKLMEEAGI 153
Query: 117 KLPRVYDDPDDIDRPVIVKPHGAKGGRGYFIAKDPQDFWTKVEKFL--GIKDKEDLKNVQ 174
++P Y DP++IDR V+VK GA+GGRGYF+A ++F K++ L G ++D+K+
Sbjct: 154 RIPFKYTDPEEIDRTVMVKFPGARGGRGYFVASSTEEFNEKIDSMLERGWITEDDVKDAH 213
Query: 175 IQEYVIGVPVYPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELELDITYTVIG 234
I+EY+ G HYFYS + E+ELM +D R+ESN+D + RIP++DQL++ LD +Y + G
Sbjct: 214 IEEYIAGTNFCIHYFYSIMNDEVELMGMDSRFESNIDGLVRIPARDQLDINLDPSYVITG 273
Query: 235 NIPLVLRESLLMDVIEAGERTVKAAEELM-GGLWGPFCLEGVFTPDLDFVVFEISARIVA 293
N P+ +RESLL + G+R V+AA +++ G+ GPFCL+ + T +L+ V FE+SAR
Sbjct: 274 NHPVAMRESLLPQAFDMGDRMVEAASKIVPPGMNGPFCLQTMCTDNLEIVTFEMSARTDG 333
Query: 294 GTNPFINGSPYTWLKYDEPMSTGRRIAREIRLAIEEDKLDEVVS 337
GTN F++GS Y++L + E MS GRR+AREIR+A E+D+L E+++
Sbjct: 334 GTNTFMHGSTYSYLLHGEGMSMGRRVAREIRVAAEQDRLPEIIT 377
>gb|AAK40581.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 299 bits (758), Expect = 3e-80
Identities = 154/336 (45%), Positives = 221/336 (64%), Gaps = 7/336 (2%)
Query: 8 IATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKYFPVADYFLVGKYPEDELLELNA 67
IAT SHSALQIL GAK EGF+T+ + + Y K F D ++ + +N
Sbjct: 22 IATIGSHSALQILHGAKKEGFQTMVITDNKRENFY-KNFSFIDNIYAYASLDEAVSIING 80
Query: 68 V-----VIPTGSFVAHLGVELVERMKVPYFGNKRVLKWESDRNLERKWLEKAKLKLPRVY 122
+ +IP GS V +LG E V++++ FGNK++ +WE+D+ + + L K+ +K+P ++
Sbjct: 81 IKDYGILIPHGSLVEYLGKERVDKIETKIFGNKKIFEWEADQKKKMELLRKSNIKIPEIF 140
Query: 123 DDPDDIDRPVIVKPHGAKGGRGYFIAKDPQDFWTKVEKFLGIKDKEDLKNVQIQEYVIGV 182
+ P+D+DR VIVK +GAKGG+GYF+A++ + ++K + K D V IQEYV+GV
Sbjct: 141 ERPEDVDRLVIVKLNGAKGGKGYFLARNKSEVKEGIQKLIESKMIRDENEVIIQEYVVGV 200
Query: 183 PVYPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELELDITYTVIGNIPLVLRE 242
P+Y +FYS + E+ ID RYE+N+D + R+P + EL+++ T+ V+GNIP V RE
Sbjct: 201 PMYFQFFYSDIINRTEIFGIDIRYETNIDGLRRLPFEYMKELKINPTFVVVGNIPAVARE 260
Query: 243 SLLMDVIEAGERTVKAAEELM-GGLWGPFCLEGVFTPDLDFVVFEISARIVAGTNPFING 301
SLL +E V+ +EL+ G+ GPFCLE + T + D VVFE S RIVAGTN ++NG
Sbjct: 261 SLLPVALEYANNFVRTTKELVPPGMIGPFCLESIITDNSDIVVFEFSGRIVAGTNLYVNG 320
Query: 302 SPYTWLKYDEPMSTGRRIAREIRLAIEEDKLDEVVS 337
SPY+WL +DEPMS GRRIAREIR+A E+DKL VVS
Sbjct: 321 SPYSWLYWDEPMSIGRRIAREIRVANEKDKLSLVVS 356
>gb|AAK40582.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 349
Score = 220 bits (556), Expect = 1e-56
Identities = 136/349 (38%), Positives = 213/349 (60%), Gaps = 19/349 (5%)
Query: 6 VRIATYASHSALQILKGAKDEGFETIAF---GSER----VKPLYTKYFPVADYF-LVGKY 57
V+IA ASHSAL + GAKDEGF+TI G ER K + K + D+ ++
Sbjct: 3 VKIAALASHSALDVFDGAKDEGFQTIGLCKKGRERPYLEFKAIMDKCIILEDFKEIISDK 62
Query: 58 PEDELLELNAVVIPTGSFVAHLGVELVERMKVPYFGNKRVLKWES---DRNLERKWLEKA 114
+ LL NA+++P S ++G + +E+MK FGN+ +L+WE ++N K L +A
Sbjct: 63 VQSILLSENAIIVPNRSLAVYVGYDGIEKMKTKVFGNRYMLRWEERIGEKNYY-KILNEA 121
Query: 115 KLKLPRVYDDPDDIDRPVIVKPHGAKGG--RGYFIAKDPQDFWTKVEKFL--GIKDKEDL 170
K+ +P+++ P++IDRPVIVK AK RG+F A + +DF K+ + L + D E L
Sbjct: 122 KISIPKLFK-PEEIDRPVIVKLPEAKRKVERGFFFAVNKEDFEAKLNELLRNNVIDNEGL 180
Query: 171 KNVQIQEYVIGVPVYPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELELDITY 230
KN+ I+E+V G +YFYS + LEL+S+DRR +S+ D++ R+P+ Q++L
Sbjct: 181 KNMVIEEFVFGAHFNLNYFYSPIFNRLELISVDRRIQSDWDSLYRLPADIQIKLGRIPKL 240
Query: 231 TVIGNIPLVLRESLLMDVIEAGERTVKAAEEL-MGGLWGPFCLEGVFTPDLDFVVFEISA 289
+G+ P+ +RESLL V E G R V A ++L G+ GPF L+ + TPDLD VV++++
Sbjct: 241 IEVGHEPVTIRESLLEKVFEIGYRFVDATQKLEPPGIIGPFTLQVMVTPDLDLVVYDVAP 300
Query: 290 RIVAGTNPFI-NGSPYTWLKYDEPMSTGRRIAREIRLAIEEDKLDEVVS 337
RI GTN ++ GS Y+ + +P+S GRRIA EI+ AI + +++++
Sbjct: 301 RIGGGTNVYMGTGSQYSKFYFGKPISLGRRIALEIKHAIINNLTEKILT 349
>pir||A71139 hypothetical protein PH0324 - Pyrococcus horikoshii
>gi|3256715|dbj|BAA29398.1| (AP000002) 383aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 383
Score = 191 bits (481), Expect = 8e-48
Identities = 126/362 (34%), Positives = 196/362 (53%), Gaps = 30/362 (8%)
Query: 6 VRIATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKYFP------------VADYFL 53
+ I SHSAL I GAK+EGF + Y KYF + + +
Sbjct: 22 ITIGVIGSHSALDIADGAKEEGFPVLVVAQRGRHRTYAKYFKLRKTKDNLTKGFIDEVII 81
Query: 54 VGKYPE-----DELLELNAVVIPTGSFVAHLGVELVER-MKVPYFGNKRVLKWESDRNLE 107
+ K+ + +EL++ N + IP SFV + G++ VE KVP FG + +L+ E R +
Sbjct: 82 LDKFAQIIEIQEELIKRNVIFIPNRSFVVYTGIDKVENEFKVPMFGTRSLLRTEERREEK 141
Query: 108 RKW--LEKAKLKLPRVY--DDPDDIDRPVIVKPHGAKG-GRGYFIAKDPQDFWTKVEKF- 161
+ LEKA L P ++ DD+ ++ PH K RG+F A ++F K E+
Sbjct: 142 SYYWLLEKAGLPYPEEVKPEEIDDVGLVMVKLPHAKKRLERGFFTAASYKEFKEKSERLI 201
Query: 162 -LGIKDKEDLKNVQIQEYVIGVPVYPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSKD 220
LG+ +EDL +I+ Y+IG +FYS + E+EL+ +D R+E+++D R+P+
Sbjct: 202 RLGVITREDLDKARIERYIIGPVFNFDFFYSPIDEEIELLGVDWRFETSLDGHVRLPAAQ 261
Query: 221 QLEL---ELDITYTVIGNIPLVLRESLLMDVIEAGERTVKAAEELM-GGLWGPFCLEGVF 276
QL L + + YTV G+ LRESLL V + E+ V+A ++ G+ GPF L+ V
Sbjct: 262 QLTLPEHQFEPEYTVCGHASATLRESLLEKVFDMAEKYVEATKKYYPPGIIGPFTLQTVV 321
Query: 277 TPDLDFVVFEISARIVAGTNPFIN-GSPYTWLKYDEPMSTGRRIAREIRLAIEEDKLDEV 335
DL+F +F+++ R GTN ++ G PY + PMSTGRRIA EI+ IE D+L+++
Sbjct: 322 DKDLNFYIFDVAPRTGGGTNIHMSMGHPYGNSLWRSPMSTGRRIALEIKRGIELDELEKL 381
Query: 336 VS 337
V+
Sbjct: 382 VT 383
>pir||F75012 hypothetical protein PAB1272 - Pyrococcus abyssi (strain Orsay)
>gi|5459054|emb|CAB50540.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 380
Score = 188 bits (473), Expect = 7e-47
Identities = 127/363 (34%), Positives = 197/363 (53%), Gaps = 32/363 (8%)
Query: 6 VRIATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKYFP------------VADYFL 53
+ I SHSAL I GAK+EG T+ Y KYF + + +
Sbjct: 19 ITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFRMRKTRDGLVKGFIDEVIV 78
Query: 54 VGKYPE-----DELLELNAVVIPTGSFVAHLGVELVER-MKVPYFGNKRVLKWESDRNLE 107
+ K+ + +EL + N + +P SFV + G++ VE VP FG + +L+ E +R+ E
Sbjct: 79 LDKFAQIIEIQEELRKRNVIFVPNRSFVVYTGIDRVENEFLVPMFGTRSLLRTE-ERSEE 137
Query: 108 RKW---LEKAKLKLPRVY--DDPDDIDRPVIVKPHGAKG-GRGYFIAKDPQDFWTKVEKF 161
+ + LEKAKL P ++ DD+ ++ PH K RG+F A ++F K EK
Sbjct: 138 KSYYWLLEKAKLPYPEPVSPEEIDDVGLVIVKLPHAKKRLERGFFTAASYKEFKEKSEKL 197
Query: 162 --LGIKDKEDLKNVQIQEYVIGVPVYPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSK 219
LG+ +EDL +I+ Y+IG +FYS + E+EL+ ID R+E+++D R+P+
Sbjct: 198 IRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIELLGIDWRFETSLDGHVRLPAA 257
Query: 220 DQL---ELELDITYTVIGNIPLVLRESLLMDVIEAGERTVKAAEELM-GGLWGPFCLEGV 275
QL E + + YTV G+ LRESLL V + E+ V+A ++ G+ GPF L+
Sbjct: 258 QQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEATKKYYPPGIIGPFTLQTA 317
Query: 276 FTPDLDFVVFEISARIVAGTN-PFINGSPYTWLKYDEPMSTGRRIAREIRLAIEEDKLDE 334
DL+F +++++ R GTN G PY + +PMSTGRRIA EI+ AIE D+L++
Sbjct: 318 VDKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMSTGRRIALEIKRAIELDELEK 377
Query: 335 VVS 337
+V+
Sbjct: 378 IVT 380
>sp|P14027|YRP8_METVA HYPOTHETICAL 26.3 KD PROTEIN IN RPS10 3'REGION (ORF 3/4)
Length = 230
Score = 184 bits (462), Expect = 1e-45
Identities = 96/207 (46%), Positives = 138/207 (66%), Gaps = 5/207 (2%)
Query: 132 VIVKPHGAKGGRGYFIAKDPQDFWTKVEKFL--GIKDKEDLKNVQIQEYVIGVPVYPHYF 189
V+ H K G+ + D +FW K+ F G+ +ED+K I EYV+G HYF
Sbjct: 14 VLTASHNPKEYTGFKMC-DIFEFWRKINDFKAKGVLSEEDVKKAHIDEYVVGANYCIHYF 72
Query: 190 YSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELELDITYTVIGNIPLVLRESLLMDVI 249
YS L +ELM IDRRYES++D + R+PSKDQLEL++D +Y + GN P+V+RESLL V
Sbjct: 73 YSPLKDRVELMGIDRRYESSIDGLVRVPSKDQLELDIDPSYLITGNFPVVIRESLLPQVF 132
Query: 250 EAGERTVKAAEEL-MGGLWGPFCLEGVFTPDLDFVVFEISARIVAGTNPFINGSPYTWLK 308
+ G++ K AEEL + G+ GPFCL+ + T +L+ VVFE+SAR G N F+NGSPY++L
Sbjct: 133 DMGDKLCKKAEELVIPGMLGPFCLQSLCTENLELVVFEMSARSDGGNNTFMNGSPYSYLY 192
Query: 309 YDEPMSTGRRIAREIRLAIEEDKLDEV 335
EP+S G+RIA+ +LA+E ++++
Sbjct: 193 NAEPLSMGQRIAKN-QLALELKMIEKL 218
>gi|11497872 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429228|pir||H69281 conserved hypothetical protein
AF0256 - Archaeoglobus fulgidus
>gi|2650382|gb|AAB90975.1| (AE001088) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 373
Score = 154 bits (386), Expect = 1e-36
Identities = 110/364 (30%), Positives = 197/364 (53%), Gaps = 35/364 (9%)
Query: 6 VRIATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKY--FPVADYFLVGKYPE---- 59
V I + SHSA ++ AK GF+T+ LYTKY + +V K+ +
Sbjct: 13 VTIGIFGSHSAKEVGMAAKAWGFKTVIVVQRGRDKLYTKYNRHLYDEVIMVEKFKDILNR 72
Query: 60 ---DELLELNAVVIPTGSFVAHLGVELVER-MKVPYFGNKRVLKWESDRNLERKW--LEK 113
++LLELN + IP SF ++G + +E+ +VP +GN+ +L+ E + + ++ LEK
Sbjct: 73 EIQEKLLELNTIFIPNRSFAVYVGYDGIEKEFEVPIYGNRFMLRAEERNHPKNQYYLLEK 132
Query: 114 AKLKLPRVYDDPDDIDRPVIVKPHGAKGG--RGYFIAKDPQDFWTKVEKFL--GIKDKED 169
A L+ P+ + P++IDR VIVK AK R +F A P+D++ + E+ L G+ D+E
Sbjct: 133 AGLRYPKEFKSPEEIDRLVIVKVQQAKNPLERAFFYAVSPEDYYEQAERLLKEGVIDEEG 192
Query: 170 LKNVQIQEYVIGVPV---YPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELEL 226
LK +I+EYV+G + Y + + + R + N+ +P+KDQL++ +
Sbjct: 193 LKKARIEEYVLGARFNANFHSYALKDVFGNFDFVGFSDRRQVNLQGFLNLPAKDQLKINV 252
Query: 227 DITYTVIGNIPLVLRESLLMDVIEAGERTVKAAE-ELMGGLWGPFCLEG--VFTPD---- 279
+ IG+ + +RES +V EA E+ ++A + E G+ G F L+G ++P+
Sbjct: 253 PVKNEEIGHFGVTMRESKQQEVYEAAEKFIEACKAEFPPGIIGMFGLQGAMAYSPEDETK 312
Query: 280 LDFVVFEISARI-----VAGTNPFI-NGSPYTWLKYDEPMSTGRRIAREIRLAIEEDKLD 333
L+FV+F++S R+ + T+P + N + +K ++P+ EI+ A+E +++
Sbjct: 313 LEFVIFDVSFRVPGDPAIGPTSPEMRNLTLKHGVKIEDPLDL---TMMEIKKAMELKRME 369
Query: 334 EVVS 337
E+V+
Sbjct: 370 EIVT 373
>pir||QQMX3 hypothetical protein 3 - Methanococcus vannielii
>gi|44789|emb|CAA34094.1| (X15972) ORF 3 (AA 1-132)
[Methanococcus vannielii]
Length = 132
Score = 91.3 bits (223), Expect = 1e-17
Identities = 47/108 (43%), Positives = 64/108 (58%), Gaps = 3/108 (2%)
Query: 132 VIVKPHGAKGGRGYFIAKDPQDFWTKVEKFL--GIKDKEDLKNVQIQEYVIGVPVYPHYF 189
V+ H K G+ + D +FW K+ F G+ +ED+K I EYV+G HYF
Sbjct: 14 VLTASHNPKEYTGFKMC-DIFEFWRKINDFKAKGVLSEEDVKKAHIDEYVVGANYCIHYF 72
Query: 190 YSKLTRELELMSIDRRYESNVDAIGRIPSKDQLELELDITYTVIGNIP 237
YS L +ELM IDRRYES++D + R+PSKDQLEL++D +Y P
Sbjct: 73 YSPLKDRVELMGIDRRYESSIDGLVRVPSKDQLELDIDPSYAYHWKFP 120
>pir||QQMX4 hypothetical protein 4 - Methanococcus vannielii
>gi|44790|emb|CAA34095.1| (X15972) ORF 4 (AA 1-97)
[Methanococcus vannielii]
Length = 97
Score = 77.6 bits (188), Expect = 2e-13
Identities = 40/85 (47%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Query: 252 GERTVKAAEELM-GGLWGPFCLEGVFTPDLDFVVFEISARIVAGTNPFINGSPYTWLKYD 310
G++ K AEEL+ G+ GPFCL+ + T +L+ VVFE+SAR G N F+NGSPY++L
Sbjct: 2 GDKLCKKAEELVIPGMLGPFCLQSLCTENLELVVFEMSARSDGGNNTFMNGSPYSYLYNA 61
Query: 311 EPMSTGRRIAREIRLAIEEDKLDEV 335
EP+S G+RIA+ +LA+E ++++
Sbjct: 62 EPLSMGQRIAKN-QLALELKMIEKL 85
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.417
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132162482
Number of Sequences: 2977
Number of extensions: 5967644
Number of successful extensions: 11708
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11660
Number of HSP's gapped (non-prelim): 13
length of query: 337
length of database: 189,106,746
effective HSP length: 54
effective length of query: 283
effective length of database: 156,788,448
effective search space: 44371130784
effective search space used: 44371130784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)