BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0550 (PAB0550) DE:Hypothetical protein
(156 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75125 hypothetical protein PAB0550 - Pyrococcus abyssi (st... 308 2e-83
pir||F75098 hypothetical protein PAB0788 - Pyrococcus abyssi (st... 125 2e-28
sp|Q58384|Y974_METJA HYPOTHETICAL PROTEIN MJ0974 >gi|2128611|pir... 108 4e-23
gi|11497929 conserved hypothetical protein [Archaeoglobus fulgid... 99 2e-20
gi|11498691 conserved hypothetical protein [Archaeoglobus fulgid... 71 5e-12
>pir||F75125 hypothetical protein PAB0550 - Pyrococcus abyssi (strain Orsay)
>gi|5458230|emb|CAB49719.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 156
Score = 308 bits (781), Expect = 2e-83
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MTSFMIDSTLIIEHLKGNPIARKILEVLIDSDVNVYINDVVASEVIFIYLKLTTGKSYLT 60
MTSFMIDSTLIIEHLKGNPIARKILEVLIDSDVNVYINDVVASEVIFIYLKLTTGKSYLT
Sbjct: 1 MTSFMIDSTLIIEHLKGNPIARKILEVLIDSDVNVYINDVVASEVIFIYLKLTTGKSYLT 60
Query: 61 LKKNPVIVRSVDKTSVYELLGMFKFLETNEFVFSIAKRLIDKYGLLPNDALILATAIFYR 120
LKKNPVIVRSVDKTSVYELLGMFKFLETNEFVFSIAKRLIDKYGLLPNDALILATAIFYR
Sbjct: 61 LKKNPVIVRSVDKTSVYELLGMFKFLETNEFVFSIAKRLIDKYGLLPNDALILATAIFYR 120
Query: 121 CDYLIALDSDYKEPCEAEKIRLISTKEELEKALHNH 156
CDYLIALDSDYKEPCEAEKIRLISTKEELEKALHNH
Sbjct: 121 CDYLIALDSDYKEPCEAEKIRLISTKEELEKALHNH 156
>pir||F75098 hypothetical protein PAB0788 - Pyrococcus abyssi (strain Orsay)
>gi|5458603|emb|CAB50091.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 169
Score = 125 bits (312), Expect = 2e-28
Identities = 66/150 (44%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 4 FMIDSTLIIEHLKGNPIARKILEVLIDSDVNVYINDVVASEVIFIYLKLTTGKSYLTLKK 63
F IDS +I+ + G+ AR+I+E+ ++ V+IN +V +EV YLK TG+ TLK+
Sbjct: 15 FFIDSNVILNYFYGDDNAREIIEIAENAG-EVFINGIVLTEVSIRYLKDETGEKSYTLKR 73
Query: 64 NPVIVRSVDKTSVYELLGMFKFLETNEFVFSIAKRLIDKYGLLPNDALILATAIFYRCDY 123
P +V++VDK+ Y +LG F +L N + A L+D YGLLPNDA+ILAT FY Y
Sbjct: 74 KPELVKNVDKSPPYAVLGKFLYLSDNVLIGEDAVILMDIYGLLPNDAIILATCKFYGIKY 133
Query: 124 LIALDSDYKEPCEAEKIRLISTKEELEKAL 153
L++ DSD++E C+ E I LI +KE+L++ +
Sbjct: 134 LMSFDSDFREACKGEGIILIESKEKLDEII 163
>sp|Q58384|Y974_METJA HYPOTHETICAL PROTEIN MJ0974 >gi|2128611|pir||F64421 hypothetical
protein MJ0974 - Methanococcus jannaschii
>gi|1591637|gb|AAB98979.1| (U67540) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 149
Score = 108 bits (267), Expect = 4e-23
Identities = 50/126 (39%), Positives = 84/126 (65%)
Query: 7 DSTLIIEHLKGNPIARKILEVLIDSDVNVYINDVVASEVIFIYLKLTTGKSYLTLKKNPV 66
DS ++I HL G A+K++E + + ++ +IN +V SEV+F Y++ TT K + +KK+P
Sbjct: 14 DSNILIYHLCGKVEAKKLIEKVENKEICGFINPIVISEVLFFYIRATTNKRHYDIKKHPE 73
Query: 67 IVRSVDKTSVYELLGMFKFLETNEFVFSIAKRLIDKYGLLPNDALILATAIFYRCDYLIA 126
I++S+D V+EL +F+ L+ N + I++ +I KY LLPNDALI +T FY+ + + +
Sbjct: 74 ILKSLDLDIVFELFSIFQILDLNSEIVKISREIIKKYCLLPNDALICSTCKFYKINKICS 133
Query: 127 LDSDYK 132
D D+K
Sbjct: 134 FDDDFK 139
>gi|11497929 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450186|pir||C69289 conserved hypothetical protein
AF0315 - Archaeoglobus fulgidus
>gi|2650321|gb|AAB90919.1| (AE001083) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 143
Score = 99.5 bits (244), Expect = 2e-20
Identities = 47/133 (35%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Query: 1 MTS-FMIDSTLIIEHLKGNPIARKILEVLIDSDVNVYINDVVASEVIFIYLKLTTGKSYL 59
MTS +D+ +++ HL G+ A+K+++ + ++ YIN +V SEV+F+Y++L T
Sbjct: 1 MTSGVFVDTNILVRHLAGDQKAKKLIDQIEIGEIRGYINQIVVSEVVFVYMRLLTKLDAK 60
Query: 60 TLKKNPVIVRSVDKTSVYELLGMFKFLETNEFVFSIAKRLIDKYGLLPNDALILATAIFY 119
TLK+N I+ +D VYE+L +F L+++ + +++++ +YGLLPNDALI AT Y
Sbjct: 61 TLKRNHEIICKIDLEPVYEILSIFVELQSSNLITVESRKIMSRYGLLPNDALIAATCKHY 120
Query: 120 RCDYLIALDSDYK 132
+ D D++
Sbjct: 121 GIRKIATFDEDFR 133
>gi|11498691 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450187|pir||B69386 conserved hypothetical protein
AF1091 - Archaeoglobus fulgidus
>gi|2649497|gb|AAB90151.1| (AE001028) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 139
Score = 71.4 bits (172), Expect = 5e-12
Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 7 DSTLIIEHLKGNPI-ARKILEVLIDSDVNVYINDVVASEVIFIYLKLTTGKSYLTLKKNP 65
DS + + HL A ++LE + D +ND+V SEVI+ YL+ T+G L+K
Sbjct: 6 DSNVFLHHLADTKDEATELLERVEDGTFEGIVNDIVVSEVIYGYLRATSGLKPYELRKK- 64
Query: 66 VIVRSVDKTSVYELLGMFKFLETNEFVFSIAKRLIDKYGLLPNDALILATAIFYRCDYLI 125
++ +D V EL G+F+ L N F + K I KY LLPNDALI AT Y + +
Sbjct: 65 ILTIDMDLKPVEELFGLFELLPCN-FGVGLTK-FIKKYKLLPNDALIAATCKHYGINKIA 122
Query: 126 ALDSDYK 132
D D++
Sbjct: 123 TFDEDFR 129
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52077038
Number of Sequences: 2977
Number of extensions: 1967534
Number of successful extensions: 4793
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4787
Number of HSP's gapped (non-prelim): 5
length of query: 156
length of database: 189,106,746
effective HSP length: 55
effective length of query: 101
effective length of database: 156,189,961
effective search space: 15775186061
effective search space used: 15775186061
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)