BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0552 (PAB0552) DE:Hypothetical protein
(121 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75127 hypothetical protein PAB0552 - Pyrococcus abyssi (st... 237 3e-62
pir||B71004 hypothetical protein PH1328 - Pyrococcus horikoshii ... 173 5e-43
dbj|BAA82839.1| (AB023635) Holliday junction resolvase (Pfu-HJC)... 152 2e-36
sp|Q57920|Y497_METJA HYPOTHETICAL PROTEIN MJ0497 >gi|2128344|pir... 100 9e-21
gi|11499547 conserved hypothetical protein [Archaeoglobus fulgid... 74 7e-13
pir||F69036 conserved hypothetical protein MTH1270 - Methanobact... 72 3e-12
gb|AAG20372.1| (AE005110) Holliday junction resolvase; Hjr [Halo... 68 4e-11
>pir||C75127 hypothetical protein PAB0552 - Pyrococcus abyssi (strain Orsay)
>gi|5458243|emb|CAB49732.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 121
Score = 237 bits (599), Expect = 3e-62
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MYRKGASAERELIRKLENLGFAVVRSAGSKKVDIVAGNGSMYLCIEVKATRKTKLYLRKE 60
MYRKGASAERELIRKLENLGFAVVRSAGSKKVDIVAGNGSMYLCIEVKATRKTKLYLRKE
Sbjct: 1 MYRKGASAERELIRKLENLGFAVVRSAGSKKVDIVAGNGSMYLCIEVKATRKTKLYLRKE 60
Query: 61 DVERVVEFAKKFGGKPILAVKFIGVGWRFVVLDNVSSLSISPDDGEPLEVILGVQKKLLE 120
DVERVVEFAKKFGGKPILAVKFIGVGWRFVVLDNVSSLSISPDDGEPLEVILGVQKKLLE
Sbjct: 61 DVERVVEFAKKFGGKPILAVKFIGVGWRFVVLDNVSSLSISPDDGEPLEVILGVQKKLLE 120
Query: 121 V 121
V
Sbjct: 121 V 121
>pir||B71004 hypothetical protein PH1328 - Pyrococcus horikoshii
>gi|3257751|dbj|BAA30434.1| (AP000006) 124aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 124
Score = 173 bits (435), Expect = 5e-43
Identities = 81/118 (68%), Positives = 102/118 (85%)
Query: 1 MYRKGASAERELIRKLENLGFAVVRSAGSKKVDIVAGNGSMYLCIEVKATRKTKLYLRKE 60
MYRKGA+AERELI+KLE LGFAV+RSAGSKKVD+VAGNG +YLCIEVK T+K KLY++ +
Sbjct: 1 MYRKGANAERELIKKLERLGFAVIRSAGSKKVDVVAGNGKIYLCIEVKTTKKGKLYIKGD 60
Query: 61 DVERVVEFAKKFGGKPILAVKFIGVGWRFVVLDNVSSLSISPDDGEPLEVILGVQKKL 118
D++++VEFA KFGG P+LAVKF+GVGWRF +L ISP+DGE LEV++G+Q+KL
Sbjct: 61 DLKKLVEFANKFGGTPVLAVKFLGVGWRFFRPSGEGNLVISPNDGETLEVVVGLQRKL 118
>dbj|BAA82839.1| (AB023635) Holliday junction resolvase (Pfu-HJC) [Pyrococcus
furiosus]
Length = 123
Score = 152 bits (379), Expect = 2e-36
Identities = 74/119 (62%), Positives = 91/119 (76%), Gaps = 1/119 (0%)
Query: 1 MYRKGASAERELIRKLENLGFAVVRSAGSKKVDIVAGNGSMYLCIEVKATRKTKLYLRKE 60
MYRKGA AERELI+ LE GFAVVRSAGSKKVD+VAGNG YLCIEVK T+K LY+ K
Sbjct: 1 MYRKGAQAERELIKLLEKHGFAVVRSAGSKKVDLVAGNGKKYLCIEVKVTKKDHLYVGKR 60
Query: 61 DVERVVEFAKKFGGKPILAVKFIGVGWRFV-VLDNVSSLSISPDDGEPLEVILGVQKKL 118
D+ R++EF+++FGG P+LAVKF+ VGWRF+ V + +P G LEV+LG+QK L
Sbjct: 61 DMGRLIEFSRRFGGIPVLAVKFLNVGWRFIEVSPKIEKFVFTPSSGVSLEVLLGIQKTL 119
>sp|Q57920|Y497_METJA HYPOTHETICAL PROTEIN MJ0497 >gi|2128344|pir||A64362 hypothetical
protein MJ0497 - Methanococcus jannaschii
>gi|1499294|gb|AAB98490.1| (U67499) M. jannaschii
predicted coding region MJ0497 [Methanococcus
jannaschii]
Length = 133
Score = 99.8 bits (245), Expect = 9e-21
Identities = 48/83 (57%), Positives = 61/83 (72%)
Query: 2 YRKGASAERELIRKLENLGFAVVRSAGSKKVDIVAGNGSMYLCIEVKATRKTKLYLRKED 61
YRKG+S EREL R LE GFAV+RSAGSK VD++AG L E K + KTK Y+ KED
Sbjct: 5 YRKGSSFERELKRLLEKEGFAVIRSAGSKGVDLIAGRKGEVLIFECKTSSKTKFYINKED 64
Query: 62 VERVVEFAKKFGGKPILAVKFIG 84
+E+++ F++ FGGKP LA+KF G
Sbjct: 65 IEKLISFSEIFGGKPYLAIKFNG 87
>gi|11499547 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430025|pir||D69495 conserved hypothetical protein
AF1965 - Archaeoglobus fulgidus
>gi|2648580|gb|AAB89293.1| (AE000967) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 136
Score = 73.7 bits (178), Expect = 7e-13
Identities = 42/94 (44%), Positives = 56/94 (58%), Gaps = 5/94 (5%)
Query: 1 MYRKGASAERELIRKLENLGFAVVRSAGSKKV-----DIVAGNGSMYLCIEVKATRKTKL 55
M KG ER+L+ +L GFA +R AGS DIVAGNG YL IEVK ++ L
Sbjct: 1 MKSKGTRFERDLLVELWKAGFAAIRVAGSGVSPFPCPDIVAGNGRTYLAIEVKMRKELPL 60
Query: 56 YLRKEDVERVVEFAKKFGGKPILAVKFIGVGWRF 89
YL ++VE++V FA+ FG + +A+K WRF
Sbjct: 61 YLSADEVEQLVTFARGFGAEAYVALKLPRKKWRF 94
>pir||F69036 conserved hypothetical protein MTH1270 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622382|gb|AAB85757.1| (AE000893) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 136
Score = 71.8 bits (173), Expect = 3e-12
Identities = 39/122 (31%), Positives = 68/122 (54%), Gaps = 9/122 (7%)
Query: 1 MYRKGASAERELIRKLENLGFAVVR---SAGSKKV---DIVAGNGSMYLCIEVKATRKTK 54
M + G ER+L++ L GFA +R S G+ K DI+AGNG +YL IEVK T + +
Sbjct: 1 MVKNGTRGERDLVKLLWEKGFAAMRAPASGGATKKPLPDIIAGNGEIYLAIEVKTTARER 60
Query: 55 LYLRKEDVERVVEFAKKFGGKPILAVKFIGVGWRFVVLDNVSSLSISPDDGEPLEVILGV 114
+Y+ E + ++ F+ FG +P + +KF W F+ + L ++P L++ + +
Sbjct: 61 IYIDSEKIGALLRFSDIFGARPYIGIKFRYRDWIFL---SPGDLELTPSSNYRLDLDIAL 117
Query: 115 QK 116
++
Sbjct: 118 ER 119
>gb|AAG20372.1| (AE005110) Holliday junction resolvase; Hjr [Halobacterium sp.
NRC-1]
Length = 141
Score = 67.9 bits (163), Expect = 4e-11
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 4 KGASAERELIRKLENLGFAVVRSAGSKKV------DIVAGNGSMYLCIEVKATRKTKLYL 57
KG EREL+ L+ GFAV+R+ S D++AGNG + IE K++ +YL
Sbjct: 7 KGNRRERELVNALDETGFAVMRAPASGAATKRDLPDVLAGNGEEFYAIEAKSSAGDPIYL 66
Query: 58 RKEDVERVVEFAKKFGGKPILAVKFIGVGWRF 89
E+VE +V FA+ FG KP + +F W F
Sbjct: 67 DGEEVESLVYFARNFGAKPRIGARFDREDWYF 98
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40930911
Number of Sequences: 2977
Number of extensions: 1509397
Number of successful extensions: 4067
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4059
Number of HSP's gapped (non-prelim): 7
length of query: 121
length of database: 189,106,746
effective HSP length: 54
effective length of query: 67
effective length of database: 156,788,448
effective search space: 10504826016
effective search space used: 10504826016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)