BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0553 (PAB0553) DE:Hypothetical protein
         (527 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75127 hypothetical protein PAB0553 - Pyrococcus abyssi (st...  1042  0.0
pir||A71004 hypothetical protein PH1327 - Pyrococcus horikoshii ...   578  e-164

>pir||D75127 hypothetical protein PAB0553 - Pyrococcus abyssi (strain Orsay)
           >gi|5458244|emb|CAB49733.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 527
           
 Score = 1042 bits (2665), Expect = 0.0
 Identities = 527/527 (100%), Positives = 527/527 (100%)

Query: 1   MNVKRIALILLILMLEPLVLAQPILVVNVTPEEVGGFPGDTLTVNVTVKNVGNETAENVS 60
           MNVKRIALILLILMLEPLVLAQPILVVNVTPEEVGGFPGDTLTVNVTVKNVGNETAENVS
Sbjct: 1   MNVKRIALILLILMLEPLVLAQPILVVNVTPEEVGGFPGDTLTVNVTVKNVGNETAENVS 60

Query: 61  IYAMDSIPGVLFTQGFVSSLTPNSSYTFPMKIYLIKPEAGLYDVTIVSRVGNQVSECTLK 120
           IYAMDSIPGVLFTQGFVSSLTPNSSYTFPMKIYLIKPEAGLYDVTIVSRVGNQVSECTLK
Sbjct: 61  IYAMDSIPGVLFTQGFVSSLTPNSSYTFPMKIYLIKPEAGLYDVTIVSRVGNQVSECTLK 120

Query: 121 LKVRSVVNFTLSIEGEERYLYGTNVTFTLGVDSQSNLLLYGDVKVIVFGENGKIIYTRTF 180
           LKVRSVVNFTLSIEGEERYLYGTNVTFTLGVDSQSNLLLYGDVKVIVFGENGKIIYTRTF
Sbjct: 121 LKVRSVVNFTLSIEGEERYLYGTNVTFTLGVDSQSNLLLYGDVKVIVFGENGKIIYTRTF 180

Query: 181 KPMISSWGNWEKELNIGKLPVGNYTVKLLADFYGRKKTGTYNFSVYRRPLTFTAYFNSGK 240
           KPMISSWGNWEKELNIGKLPVGNYTVKLLADFYGRKKTGTYNFSVYRRPLTFTAYFNSGK
Sbjct: 181 KPMISSWGNWEKELNIGKLPVGNYTVKLLADFYGRKKTGTYNFSVYRRPLTFTAYFNSGK 240

Query: 241 IIAEVREKGKPVKGVKVWINDREYLTDEDGRVEVEVTDPGVYIVRANLDGIIKEQIVNVE 300
           IIAEVREKGKPVKGVKVWINDREYLTDEDGRVEVEVTDPGVYIVRANLDGIIKEQIVNVE
Sbjct: 241 IIAEVREKGKPVKGVKVWINDREYLTDEDGRVEVEVTDPGVYIVRANLDGIIKEQIVNVE 300

Query: 301 RPIIVTSQVNGTLIVRVLDSKGSPIKGIPVVFKIGGEEKYEITNKLGIAEFNVSDIWGPG 360
           RPIIVTSQVNGTLIVRVLDSKGSPIKGIPVVFKIGGEEKYEITNKLGIAEFNVSDIWGPG
Sbjct: 301 RPIIVTSQVNGTLIVRVLDSKGSPIKGIPVVFKIGGEEKYEITNKLGIAEFNVSDIWGPG 360

Query: 361 EVEIRSDKYLPASKKISIKKFERKQITTTPSSPTPSKTKPRITETNVTENLTASIPQEVT 420
           EVEIRSDKYLPASKKISIKKFERKQITTTPSSPTPSKTKPRITETNVTENLTASIPQEVT
Sbjct: 361 EVEIRSDKYLPASKKISIKKFERKQITTTPSSPTPSKTKPRITETNVTENLTASIPQEVT 420

Query: 421 TTPITPGKKVDLPLIVLIVAFAVTLASSSYLAFLRPIVIEDSVDRYYFVRVKAPRLRGLK 480
           TTPITPGKKVDLPLIVLIVAFAVTLASSSYLAFLRPIVIEDSVDRYYFVRVKAPRLRGLK
Sbjct: 421 TTPITPGKKVDLPLIVLIVAFAVTLASSSYLAFLRPIVIEDSVDRYYFVRVKAPRLRGLK 480

Query: 481 NFRFEKQASVKSAWASKGKVKIEGSKVVWEIQELEPEEEATLQLILS 527
           NFRFEKQASVKSAWASKGKVKIEGSKVVWEIQELEPEEEATLQLILS
Sbjct: 481 NFRFEKQASVKSAWASKGKVKIEGSKVVWEIQELEPEEEATLQLILS 527


>pir||A71004 hypothetical protein PH1327 - Pyrococcus horikoshii
           >gi|3257750|dbj|BAA30433.1| (AP000006) 513aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 513
           
 Score =  578 bits (1473), Expect = e-164
 Identities = 285/523 (54%), Positives = 386/523 (73%), Gaps = 22/523 (4%)

Query: 9   ILLILMLEPLVLAQPILVVNVTPEEVGGFPGDTLTVNVTVKNVGNETAENVSIYAMDSIP 68
           +LL L+L P V +QP+LV+ V+P+ V GFPG TL VNVT+KNVGNETA NV+IY++D+I 
Sbjct: 9   LLLALLLTPPVSSQPVLVLKVSPKSVEGFPGQTLVVNVTIKNVGNETARNVTIYSIDTIK 68

Query: 69  GVLFTQGFVSSLTPNSSYTFPMKIYLIKPEAGLYDVTIVSRVGNQVSECTLKLKVRSVVN 128
           G+LFTQ F++ L PNSS+ FPMKI+L+KPEAGLY+V IV++ GNQ++E T+K+KV+SVVN
Sbjct: 69  GILFTQEFLNFLEPNSSHEFPMKIFLVKPEAGLYNVHIVAKFGNQIAEDTVKVKVKSVVN 128

Query: 129 FTLSIEGEERYLYGTNVTFTLGVDSQSNLLLYGDVKVIVFGENGKIIYTRTFKPMISSWG 188
           FTLSIEG+ +YLYG N TF L +DS SNLLLYG+  V +F +NGK++   ++KPMI SWG
Sbjct: 129 FTLSIEGKGKYLYGENATFILSIDSTSNLLLYGEAYVKLF-KNGKLMLETSYKPMIDSWG 187

Query: 189 NWEKELNIGKLPVGNYTVKLLADFYGRKKTGTYNFSVYRRPLTFTAYFNSGKIIAEVREK 248
            W +E+N+GKLP+GNYT++  A+FYGRK+  TY+F+VYRR LT  AYF  GKI   VRE+
Sbjct: 188 VWRREINLGKLPLGNYTLRFEAEFYGRKENVTYSFTVYRRNLTMDAYFRGGKIFVNVREE 247

Query: 249 GKPVKGVKVWINDREYLTDEDGRVEVEVTDPGVYIVRANLDGIIKEQIVNVERPIIVTSQ 308
             PV+G+KVWIN RE+ T+  G V ++VT+PG YI++A+LDGII E+IV VERPII+ SQ
Sbjct: 248 DFPVEGIKVWINGREFTTNSLGFVTLDVTEPGTYIIKADLDGIISEKIVEVERPIILASQ 307

Query: 309 VNGTLIVRVLDSKGSPIKGIPVVFKIGGEEKYEITNKLGIAEFNVSDIW-GPGEVEIRSD 367
           +N TL V+VLDSKG+PIKGI VV +   +  Y +T++ GIAEFNV  I  G  E++I S+
Sbjct: 308 INNTLRVKVLDSKGNPIKGITVVVQGSRDTLYSVTDENGIAEFNVEKIGVGAAEIKIESE 367

Query: 368 KYLPASKKISIKKFERKQITTTPSSPTPSKTKPRITETNVTENLTASIPQEVTTTPITPG 427
            YLPAS ++++                 SK K  +    +TE LT +     T  P+ PG
Sbjct: 368 NYLPASTQVNV---------------IASKPKKELITKTITETLTTTTTS--TYVPLAPG 410

Query: 428 KK---VDLPLIVLIVAFAVTLASSSYLAFLRPIVIEDSVDRYYFVRVKAPRLRGLKNFRF 484
           K+    D+  ++L++ F     +SSYLAF RPI++E+S+D+YYFV++KAPRLRG+K F++
Sbjct: 411 KERSASDINFVLLVIGFLAVFGASSYLAFFRPIIVEESIDKYYFVKIKAPRLRGVKEFKY 470

Query: 485 EKQASVKSAWASKGKVKIEGSKVVWEIQELEPEEEATLQLILS 527
           EK A+VK AWAS+G V+IE +K++W I EL P EEA LQ  LS
Sbjct: 471 EKLANVKDAWASRGNVEIEDNKIIWRIDELGPGEEAILQFTLS 513


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.137    0.385 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197350170
Number of Sequences: 2977
Number of extensions: 8809898
Number of successful extensions: 30277
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30267
Number of HSP's gapped (non-prelim): 2
length of query: 527
length of database: 189,106,746
effective HSP length: 59
effective length of query: 468
effective length of database: 153,796,013
effective search space: 71976534084
effective search space used: 71976534084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)