BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0553 (PAB0553) DE:Hypothetical protein
(527 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75127 hypothetical protein PAB0553 - Pyrococcus abyssi (st... 1042 0.0
pir||A71004 hypothetical protein PH1327 - Pyrococcus horikoshii ... 578 e-164
>pir||D75127 hypothetical protein PAB0553 - Pyrococcus abyssi (strain Orsay)
>gi|5458244|emb|CAB49733.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 527
Score = 1042 bits (2665), Expect = 0.0
Identities = 527/527 (100%), Positives = 527/527 (100%)
Query: 1 MNVKRIALILLILMLEPLVLAQPILVVNVTPEEVGGFPGDTLTVNVTVKNVGNETAENVS 60
MNVKRIALILLILMLEPLVLAQPILVVNVTPEEVGGFPGDTLTVNVTVKNVGNETAENVS
Sbjct: 1 MNVKRIALILLILMLEPLVLAQPILVVNVTPEEVGGFPGDTLTVNVTVKNVGNETAENVS 60
Query: 61 IYAMDSIPGVLFTQGFVSSLTPNSSYTFPMKIYLIKPEAGLYDVTIVSRVGNQVSECTLK 120
IYAMDSIPGVLFTQGFVSSLTPNSSYTFPMKIYLIKPEAGLYDVTIVSRVGNQVSECTLK
Sbjct: 61 IYAMDSIPGVLFTQGFVSSLTPNSSYTFPMKIYLIKPEAGLYDVTIVSRVGNQVSECTLK 120
Query: 121 LKVRSVVNFTLSIEGEERYLYGTNVTFTLGVDSQSNLLLYGDVKVIVFGENGKIIYTRTF 180
LKVRSVVNFTLSIEGEERYLYGTNVTFTLGVDSQSNLLLYGDVKVIVFGENGKIIYTRTF
Sbjct: 121 LKVRSVVNFTLSIEGEERYLYGTNVTFTLGVDSQSNLLLYGDVKVIVFGENGKIIYTRTF 180
Query: 181 KPMISSWGNWEKELNIGKLPVGNYTVKLLADFYGRKKTGTYNFSVYRRPLTFTAYFNSGK 240
KPMISSWGNWEKELNIGKLPVGNYTVKLLADFYGRKKTGTYNFSVYRRPLTFTAYFNSGK
Sbjct: 181 KPMISSWGNWEKELNIGKLPVGNYTVKLLADFYGRKKTGTYNFSVYRRPLTFTAYFNSGK 240
Query: 241 IIAEVREKGKPVKGVKVWINDREYLTDEDGRVEVEVTDPGVYIVRANLDGIIKEQIVNVE 300
IIAEVREKGKPVKGVKVWINDREYLTDEDGRVEVEVTDPGVYIVRANLDGIIKEQIVNVE
Sbjct: 241 IIAEVREKGKPVKGVKVWINDREYLTDEDGRVEVEVTDPGVYIVRANLDGIIKEQIVNVE 300
Query: 301 RPIIVTSQVNGTLIVRVLDSKGSPIKGIPVVFKIGGEEKYEITNKLGIAEFNVSDIWGPG 360
RPIIVTSQVNGTLIVRVLDSKGSPIKGIPVVFKIGGEEKYEITNKLGIAEFNVSDIWGPG
Sbjct: 301 RPIIVTSQVNGTLIVRVLDSKGSPIKGIPVVFKIGGEEKYEITNKLGIAEFNVSDIWGPG 360
Query: 361 EVEIRSDKYLPASKKISIKKFERKQITTTPSSPTPSKTKPRITETNVTENLTASIPQEVT 420
EVEIRSDKYLPASKKISIKKFERKQITTTPSSPTPSKTKPRITETNVTENLTASIPQEVT
Sbjct: 361 EVEIRSDKYLPASKKISIKKFERKQITTTPSSPTPSKTKPRITETNVTENLTASIPQEVT 420
Query: 421 TTPITPGKKVDLPLIVLIVAFAVTLASSSYLAFLRPIVIEDSVDRYYFVRVKAPRLRGLK 480
TTPITPGKKVDLPLIVLIVAFAVTLASSSYLAFLRPIVIEDSVDRYYFVRVKAPRLRGLK
Sbjct: 421 TTPITPGKKVDLPLIVLIVAFAVTLASSSYLAFLRPIVIEDSVDRYYFVRVKAPRLRGLK 480
Query: 481 NFRFEKQASVKSAWASKGKVKIEGSKVVWEIQELEPEEEATLQLILS 527
NFRFEKQASVKSAWASKGKVKIEGSKVVWEIQELEPEEEATLQLILS
Sbjct: 481 NFRFEKQASVKSAWASKGKVKIEGSKVVWEIQELEPEEEATLQLILS 527
>pir||A71004 hypothetical protein PH1327 - Pyrococcus horikoshii
>gi|3257750|dbj|BAA30433.1| (AP000006) 513aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 513
Score = 578 bits (1473), Expect = e-164
Identities = 285/523 (54%), Positives = 386/523 (73%), Gaps = 22/523 (4%)
Query: 9 ILLILMLEPLVLAQPILVVNVTPEEVGGFPGDTLTVNVTVKNVGNETAENVSIYAMDSIP 68
+LL L+L P V +QP+LV+ V+P+ V GFPG TL VNVT+KNVGNETA NV+IY++D+I
Sbjct: 9 LLLALLLTPPVSSQPVLVLKVSPKSVEGFPGQTLVVNVTIKNVGNETARNVTIYSIDTIK 68
Query: 69 GVLFTQGFVSSLTPNSSYTFPMKIYLIKPEAGLYDVTIVSRVGNQVSECTLKLKVRSVVN 128
G+LFTQ F++ L PNSS+ FPMKI+L+KPEAGLY+V IV++ GNQ++E T+K+KV+SVVN
Sbjct: 69 GILFTQEFLNFLEPNSSHEFPMKIFLVKPEAGLYNVHIVAKFGNQIAEDTVKVKVKSVVN 128
Query: 129 FTLSIEGEERYLYGTNVTFTLGVDSQSNLLLYGDVKVIVFGENGKIIYTRTFKPMISSWG 188
FTLSIEG+ +YLYG N TF L +DS SNLLLYG+ V +F +NGK++ ++KPMI SWG
Sbjct: 129 FTLSIEGKGKYLYGENATFILSIDSTSNLLLYGEAYVKLF-KNGKLMLETSYKPMIDSWG 187
Query: 189 NWEKELNIGKLPVGNYTVKLLADFYGRKKTGTYNFSVYRRPLTFTAYFNSGKIIAEVREK 248
W +E+N+GKLP+GNYT++ A+FYGRK+ TY+F+VYRR LT AYF GKI VRE+
Sbjct: 188 VWRREINLGKLPLGNYTLRFEAEFYGRKENVTYSFTVYRRNLTMDAYFRGGKIFVNVREE 247
Query: 249 GKPVKGVKVWINDREYLTDEDGRVEVEVTDPGVYIVRANLDGIIKEQIVNVERPIIVTSQ 308
PV+G+KVWIN RE+ T+ G V ++VT+PG YI++A+LDGII E+IV VERPII+ SQ
Sbjct: 248 DFPVEGIKVWINGREFTTNSLGFVTLDVTEPGTYIIKADLDGIISEKIVEVERPIILASQ 307
Query: 309 VNGTLIVRVLDSKGSPIKGIPVVFKIGGEEKYEITNKLGIAEFNVSDIW-GPGEVEIRSD 367
+N TL V+VLDSKG+PIKGI VV + + Y +T++ GIAEFNV I G E++I S+
Sbjct: 308 INNTLRVKVLDSKGNPIKGITVVVQGSRDTLYSVTDENGIAEFNVEKIGVGAAEIKIESE 367
Query: 368 KYLPASKKISIKKFERKQITTTPSSPTPSKTKPRITETNVTENLTASIPQEVTTTPITPG 427
YLPAS ++++ SK K + +TE LT + T P+ PG
Sbjct: 368 NYLPASTQVNV---------------IASKPKKELITKTITETLTTTTTS--TYVPLAPG 410
Query: 428 KK---VDLPLIVLIVAFAVTLASSSYLAFLRPIVIEDSVDRYYFVRVKAPRLRGLKNFRF 484
K+ D+ ++L++ F +SSYLAF RPI++E+S+D+YYFV++KAPRLRG+K F++
Sbjct: 411 KERSASDINFVLLVIGFLAVFGASSYLAFFRPIIVEESIDKYYFVKIKAPRLRGVKEFKY 470
Query: 485 EKQASVKSAWASKGKVKIEGSKVVWEIQELEPEEEATLQLILS 527
EK A+VK AWAS+G V+IE +K++W I EL P EEA LQ LS
Sbjct: 471 EKLANVKDAWASRGNVEIEDNKIIWRIDELGPGEEAILQFTLS 513
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.137 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197350170
Number of Sequences: 2977
Number of extensions: 8809898
Number of successful extensions: 30277
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30267
Number of HSP's gapped (non-prelim): 2
length of query: 527
length of database: 189,106,746
effective HSP length: 59
effective length of query: 468
effective length of database: 153,796,013
effective search space: 71976534084
effective search space used: 71976534084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)