BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0555 (PAB0555) DE:CAAX PRENYL PROTEASE 1 related
(338 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75127 CAAX prenyl proteinase 1 related PAB0555 - Pyrococcu... 665 0.0
pir||D71862 probable zinc-metallo proteinase - Helicobacter pylo... 81 2e-14
pir||F64567 zinc metalloproteinase (EC 3.4.24.-) - Helicobacter ... 80 5e-14
pir||D83293 heat shock protein HtpX PA2830 [imported] - Pseudomo... 69 6e-11
>pir||H75127 CAAX prenyl proteinase 1 related PAB0555 - Pyrococcus abyssi
(strain Orsay) >gi|5458248|emb|CAB49737.1| (AJ248285)
CAAX PRENYL PROTEASE 1 related [Pyrococcus abyssi]
Length = 338
Score = 665 bits (1696), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MLWEMLILFGMILPVLFVWHRIKELRGYEKEGRMIKFEKVLFEALIISLVFFSLAGILGF 60
MLWEMLILFGMILPVLFVWHRIKELRGYEKEGRMIKFEKVLFEALIISLVFFSLAGILGF
Sbjct: 1 MLWEMLILFGMILPVLFVWHRIKELRGYEKEGRMIKFEKVLFEALIISLVFFSLAGILGF 60
Query: 61 FDFAMSFIEPLDKIIVILPVLVPLVVSTLLITRELGEKIRRGDYIVLAVFIVFIFLLVSL 120
FDFAMSFIEPLDKIIVILPVLVPLVVSTLLITRELGEKIRRGDYIVLAVFIVFIFLLVSL
Sbjct: 61 FDFAMSFIEPLDKIIVILPVLVPLVVSTLLITRELGEKIRRGDYIVLAVFIVFIFLLVSL 120
Query: 121 FSIIPMPYVPIVYLLMFLSFAELFSRIVRRFFHGTPMSGELRAKVEELCRRANVNVEEVY 180
FSIIPMPYVPIVYLLMFLSFAELFSRIVRRFFHGTPMSGELRAKVEELCRRANVNVEEVY
Sbjct: 121 FSIIPMPYVPIVYLLMFLSFAELFSRIVRRFFHGTPMSGELRAKVEELCRRANVNVEEVY 180
Query: 181 IIDEERIGAFVTGMKGKTIFITKGAIEKLNEMELLAVIAHELGHVKRRHALKRELALVFG 240
IIDEERIGAFVTGMKGKTIFITKGAIEKLNEMELLAVIAHELGHVKRRHALKRELALVFG
Sbjct: 181 IIDEERIGAFVTGMKGKTIFITKGAIEKLNEMELLAVIAHELGHVKRRHALKRELALVFG 240
Query: 241 LSLPIIGYYMGGDIPLFLSFVMSIALVFYSTFQLAKKFEIDADRFAASLVGPINVIKALE 300
LSLPIIGYYMGGDIPLFLSFVMSIALVFYSTFQLAKKFEIDADRFAASLVGPINVIKALE
Sbjct: 241 LSLPIIGYYMGGDIPLFLSFVMSIALVFYSTFQLAKKFEIDADRFAASLVGPINVIKALE 300
Query: 301 KVYKKEGLPKRTPRWYNIIHSHPSLEERVRALEAAFPP 338
KVYKKEGLPKRTPRWYNIIHSHPSLEERVRALEAAFPP
Sbjct: 301 KVYKKEGLPKRTPRWYNIIHSHPSLEERVRALEAAFPP 338
>pir||D71862 probable zinc-metallo proteinase - Helicobacter pylori (strain
J99) >gi|4155583|gb|AAD06576.1| (AE001528) putative
ZINC-METALLO PROTEASE [Helicobacter pylori J99]
Length = 407
Score = 80.8 bits (196), Expect = 2e-14
Identities = 79/319 (24%), Positives = 154/319 (47%), Gaps = 42/319 (13%)
Query: 51 FFSLAGILGFFDFAMSFIEPLDKIIVILPVLVPLVVSTLLITRELG----------EKIR 100
+ +L LG+ FA+ F+ + ++ LP+ +T+ + +E G +
Sbjct: 91 YLNLPETLGYLVFALLFLAI--QSVLALPISY---YTTMHLDKEFGFSKVSLSLFFKDFF 145
Query: 101 RGDYIVLAVFIVFIFLLVSLFSIIPMPYVPIVYLL-MFLSFAELF-SRIVRRFFHGTPMS 158
+G + L V ++ I+ L+ + + + +++ +F+ A LF +I + F TP++
Sbjct: 146 KGLLLTLGVGLLLIYTLIMIIEHVEHWEISSFFVVFVFMILANLFYPKIAQLFNQFTPLN 205
Query: 159 G-ELRAKVEELCRRANVNVEEVYIID----EERIGAFVTGM-KGKTIFITKGAIEKLNEM 212
+L +++E + + + ++++D + R+ A+ G+ K K + + I K+
Sbjct: 206 NRDLESQIESMMDKVGFKSQGIFVMDASKRDGRLNAYFGGLGKNKRVVLFDTLISKVGTE 265
Query: 213 ELLAVIAHELGHVKRRHALKR------ELALVFGL--SLPIIGYYMGGDIPLFLSFVMSI 264
LLA++ HELGH K + LK LALVF L LP + + G ++ + +++I
Sbjct: 266 GLLAILGHELGHFKNKDLLKNLGIMGGLLALVFALIAHLPPL-VFEGFNVSQTPASLITI 324
Query: 265 ALVFYSTFQ---------LAKKFEIDADRFAASLVGPINVIKALEK-VYKKEGLPKRTPR 314
L+F F ++K E +AD+F ASL + KAL V + + P P
Sbjct: 325 LLLFLPVFSFYAMPLIGFFSRKNEYNADKFGASLSSKETLAKALVSIVNENKAFPYSHPF 384
Query: 315 WYNIIHSHPSLEERVRALE 333
+ + +HP L ER++AL+
Sbjct: 385 YVFLHFTHPPLLERLKALD 403
>pir||F64567 zinc metalloproteinase (EC 3.4.24.-) - Helicobacter pylori (strain
26695) >gi|2313487|gb|AAD07451.1| (AE000555)
zinc-metallo protease (YJR117W) [Helicobacter pylori
26695]
Length = 407
Score = 79.6 bits (193), Expect = 5e-14
Identities = 80/319 (25%), Positives = 155/319 (48%), Gaps = 42/319 (13%)
Query: 51 FFSLAGILGFFDFAMSFIEPLDKIIVILPVLVPLVVSTLLITRELG----------EKIR 100
+ +L LG+ FA+ F+ + ++ LP+ +T+ + +E G +
Sbjct: 91 YLNLPETLGYLVFALLFLAI--QSVLALPISY---YTTMHLDKEFGFSKVSLSLFFKDFF 145
Query: 101 RGDYIVLAVFIVFIFLLVSLFSIIPMPYVPIVYLL-MFLSFAELF-SRIVRRFFHGTPMS 158
+G + L+V ++ I+ L+ + + + +++ +F+ A LF +I + F TP++
Sbjct: 146 KGLSLTLSVGLLLIYTLIMIIEHVEHWEISSFFVVFVFMILANLFYPKIAQLFNQFTPLN 205
Query: 159 G-ELRAKVEELCRRANVNVEEVYIID----EERIGAFVTGM-KGKTIFITKGAIEKLNEM 212
+L +++E + + E ++++D + R+ A+ G+ K K + + I K+
Sbjct: 206 NRDLESQIEGMMDKVGFKSEGIFVMDASKRDGRLNAYFGGLGKNKRVVLFDTLISKVGTE 265
Query: 213 ELLAVIAHELGHVKRRHALKR------ELALVFGL--SLPIIGYYMGGDIPLFLSFVMSI 264
LLA++ HELGH K + LK LALVF L LP + + G ++ + +++I
Sbjct: 266 GLLAILGHELGHFKNKDLLKSLGIMGGLLALVFALIAHLPPL-VFEGFNVSQTPASLIAI 324
Query: 265 ALVFYSTFQ---------LAKKFEIDADRFAASLVGPINVIKALEK-VYKKEGLPKRTPR 314
L+F F ++K E +AD+F ASL + KAL V + + P P
Sbjct: 325 LLLFLPVFSFYAMPLIGFFSRKNEYNADKFGASLSSKEVLAKALVSIVSENKAFPYSHPF 384
Query: 315 WYNIIHSHPSLEERVRALE 333
+ + +HP L ER++AL+
Sbjct: 385 YVFLHFTHPPLLERLKALD 403
>pir||D83293 heat shock protein HtpX PA2830 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948915|gb|AAG06218.1|AE004709_11
(AE004709) heat shock protein HtpX [Pseudomonas
aeruginosa]
Length = 291
Score = 69.5 bits (167), Expect = 6e-11
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 44/210 (20%)
Query: 165 VEELCRRANVNVEEVYIIDEERIGAFVTGMKGKT--IFITKGAIEKLNEMELLAVIAHEL 222
VEEL R A + + EV I AF TG + +++G +E+ + E+ AV+AHE+
Sbjct: 85 VEELSREAGIKMPEVGIFPAYEANAFATGWNKNDALVAVSQGLLERFSPDEVKAVLAHEI 144
Query: 223 GHVKRRHALKREL------------ALVFGLSL----------PIIGYYMGGDIP-LFLS 259
GHV + L A +FG + P IGY++ L L
Sbjct: 145 GHVANGDMVTLALIQGVVNTFVMFFARIFGNFVDKAILKNEDGPGIGYFVATIFAELVLG 204
Query: 260 FVMSIALVFYSTFQLAKKFEIDADRFAASLVGPINVIKALEKVYKKEGLPKRTPRWYN-- 317
+ SI ++++S ++ E AD A L G +I AL+++ ++G+P + P N
Sbjct: 205 ILASIIVMWFS-----RRREFRADAAGAHLAGTGAMIAALQRLRSEQGVPVQMPDTLNAF 259
Query: 318 ------------IIHSHPSLEERVRALEAA 335
++ SHP LE+R+ AL A+
Sbjct: 260 GINGGLKHGLAGLLMSHPPLEDRIEALRAS 289
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.148 0.433
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115952736
Number of Sequences: 2977
Number of extensions: 4682199
Number of successful extensions: 17134
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17124
Number of HSP's gapped (non-prelim): 5
length of query: 338
length of database: 189,106,746
effective HSP length: 52
effective length of query: 286
effective length of database: 157,985,422
effective search space: 45183830692
effective search space used: 45183830692
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 165 (68.7 bits)