BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0559 (gcsH4) DE:GLYCINE CLEAVAGE SYSTEM PROTEIN H
(144 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75128 glycine cleavage system protein h PAB0559 - Pyrococc... 290 5e-78
pir||G71002 probable glycine cleavage system H protein - Pyrococ... 263 5e-70
pir||E70395 glycine cleavage system protein H - Aquifex aeolicus... 146 1e-34
pir||F72403 glycine cleavage system H protein - Thermotoga marit... 134 3e-31
pir||G72691 probable glycine cleavage system H protein APE0951 -... 134 6e-31
dbj|BAB07203.1| (AP001518) glycine cleavage system protein H [Ba... 132 1e-30
gb|AAK41202.1| Glycine cleavage system protein H [Sulfolobus sol... 131 4e-30
pir||H82479 glycine cleavage system H protein VCA0277 [imported]... 131 5e-30
sp|P23884|GCSH_ECOLI GLYCINE CLEAVAGE SYSTEM H PROTEIN >gi|10733... 130 6e-30
pir||F82994 glycine cleavage system protein H1 PA5214 [imported]... 130 6e-30
pir||A70021 glycine cleavage system protein H homolog yusH - Bac... 126 1e-28
pir||B81183 glycine cleavage system H protein NMB0575 [imported]... 124 5e-28
sp|Q50607|GCSH_MYCTU PROBABLE GLYCINE CLEAVAGE SYSTEM H PROTEIN ... 123 6e-28
pir||H81919 probable glycine cleavage system component H NMA0759... 121 4e-27
emb|CAC12487.1| (AL445067) probable glycine cleavage system H pr... 119 1e-26
pir||T44759 glycine cleavage system protein H [imported] - Mycob... 119 1e-26
pir||G75352 glycine cleavage system H protein - Deinococcus radi... 118 2e-26
pir||E82837 glycine cleavage H protein XF0181 [imported] - Xylel... 118 2e-26
pir||T34751 glycine cleavage system protein H - Streptomyces coe... 115 3e-25
gi|6319272 H-protein subunit of the glycine cleavage system; Gcv... 113 9e-25
pir||D70443 glycine cleavage system protein H - Aquifex aeolicus... 113 9e-25
gb|AAC61829.1| (AC004667) glycine decarboxylase complex H-protei... 113 9e-25
pir||S40214 H-protein - Flaveria pringlei >gi|2147453|pir||S6019... 112 2e-24
sp|P49359|GCSH_FLAPR GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR... 112 2e-24
sp|Q39732|GCSH_FLAAN GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR... 112 2e-24
emb|CAB16710.1| (Z99530) H protein [Flaveria anomala] 112 2e-24
pir||S60198 glycine cleavage system protein H precursor (clone H... 111 3e-24
emb|CAB16914.1| (Z99765) H-Protein precursor [Flaveria pringlei] 111 3e-24
gb|AAF81345.1|AC007767_25 (AC007767) Identical to a glycine clea... 111 3e-24
sp|P46485|GCSH_FLATR GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR... 111 3e-24
pir||S57665 H-protein precursor - Flaveria trinervia >gi|886868|... 111 3e-24
sp|P93255|GCSH_MESCR GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR... 111 5e-24
sp|P16048|GCSH_PEA GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR >... 110 6e-24
pdb|1DXM|A Chain A, Reduced Form Of The H Protein From Glycine D... 110 6e-24
pir||T22474 hypothetical protein F52A8.5 - Caenorhabditis elegan... 110 6e-24
pir||S49242 H-protein - Flaveria chloraefolia >gi|1085829|pir||S... 110 8e-24
sp|P49360|GCSH_FLAPU GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR... 110 8e-24
pir||S49250 glycine cleavage system protein H - Flaveria palmeri... 109 1e-23
gb|AAF13277.1|AF203725_1 (AF203725) pumpless protein [Drosophila... 109 1e-23
pir||T20284 hypothetical protein D1025.2 - Caenorhabditis elegan... 109 2e-23
pir||S49230 glycine cleavage system protein H precursor (clone H... 108 2e-23
prf||1923203A H protein [Pisum sativum] 108 3e-23
pir||T02072 probable glycine cleavage system protein H - rice >g... 108 3e-23
sp|P25855|GCSH_ARATH GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR... 108 4e-23
pir||S49231 glycine cleavage system protein H precursor (clone H... 108 4e-23
gb|AAF63472.1| (AF231451) H protein [Oryctolagus cuniculus] 107 7e-23
gi|4758424 glycine cleavage system protein H (aminomethyl carrie... 105 2e-22
emb|CAB56621.1| (Y17321) H protein [Rattus norvegicus] 105 2e-22
gi|11430254 glycine cleavage system protein H (aminomethyl carri... 105 2e-22
emb|CAC18507.1| (AL033531) dJ702J19.1 (glycine cleavage system p... 105 2e-22
sp|P20821|GCSH_BOVIN GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR... 105 3e-22
sp|Q39733|GCSH_FLAAU GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR... 105 3e-22
pir||S60197 H-protein precursor (clone HFC2) - Flaveria cronquis... 105 3e-22
pir||S60196 H-protein precursor (clone HFC3) - Flaveria cronquis... 104 4e-22
pir||S49229 H-protein - Flaveria bidentis >gi|547494|emb|CAA8575... 104 6e-22
gb|AAG19869.1| (AE005071) glycine decarboxylase complex h-protei... 103 1e-21
pir||S77266 glycine cleavage system protein H - Synechocystis sp... 102 1e-21
emb|CAA94317.1| (Z70304) H protein [Flaveria brownii] 101 5e-21
sp|P11183|GCSH_CHICK GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR... 99 2e-20
pir||E70381 glycine cleavage system protein H - Aquifex aeolicus... 99 2e-20
pir||E83339 glycine cleavage system protein H2 PA2446 [imported]... 99 2e-20
gb|AAF51697.2| (AE003594) ppl gene product [Drosophila melanogas... 97 8e-20
gb|AAK41324.1| Glycine cleavage system protein H [Sulfolobus sol... 96 1e-19
gb|AAF69757.1|AC018749_9 (AC018749) Glycine decarboxylase H-prot... 96 2e-19
pir||D70336 hypothetical protein aq_402 - Aquifex aeolicus >gi|2... 93 1e-18
pir||C72079 glycine cleavage system H protein CP0320 [imported] ... 93 1e-18
gb|AAK41362.1| Glycine cleavage system protein H, hypothetical [... 81 6e-15
pir||F81690 glycine cleavage system H protein TC0554 [imported] ... 80 8e-15
pir||G71535 probable glycine cleavage system H protein - Chlamyd... 75 5e-13
pir||D70390 glycine cleavage system protein H - Aquifex aeolicus... 71 4e-12
>pir||E75128 glycine cleavage system protein h PAB0559 - Pyrococcus abyssi
(strain Orsay) >gi|5458253|emb|CAB49742.1| (AJ248285)
GLYCINE CLEAVAGE SYSTEM PROTEIN H [Pyrococcus abyssi]
Length = 144
Score = 290 bits (734), Expect = 5e-78
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MLGKENVVVNMIEVGEYKVKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVEL 60
MLGKENVVVNMIEVGEYKVKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVEL
Sbjct: 1 MLGKENVVVNMIEVGEYKVKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVEL 60
Query: 61 PEVGKEVKKGEVLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYGAWIAKIK 120
PEVGKEVKKGEVLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYGAWIAKIK
Sbjct: 61 PEVGKEVKKGEVLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYGAWIAKIK 120
Query: 121 PNNLEEELKELMDAEKYAEFLKSL 144
PNNLEEELKELMDAEKYAEFLKSL
Sbjct: 121 PNNLEEELKELMDAEKYAEFLKSL 144
>pir||G71002 probable glycine cleavage system H protein - Pyrococcus horikoshii
>gi|3257740|dbj|BAA30423.1| (AP000006) 138aa long
hypothetical glycine cleavage system H protein
[Pyrococcus horikoshii]
Length = 138
Score = 263 bits (666), Expect = 5e-70
Identities = 129/138 (93%), Positives = 135/138 (97%)
Query: 7 VVVNMIEVGEYKVKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKE 66
+VV MIEVGEYKVKEGLYYTK+HEWAQVLEDGTVLVGITDYAQKELGD+AYVELPEVGKE
Sbjct: 1 MVVVMIEVGEYKVKEGLYYTKDHEWAQVLEDGTVLVGITDYAQKELGDLAYVELPEVGKE 60
Query: 67 VKKGEVLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYGAWIAKIKPNNLEE 126
V KG+VLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYGAWIAKIKP NLEE
Sbjct: 61 VSKGDVLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYGAWIAKIKPKNLEE 120
Query: 127 ELKELMDAEKYAEFLKSL 144
ELKELMDAEKYAE+LK+L
Sbjct: 121 ELKELMDAEKYAEYLKTL 138
>pir||E70395 glycine cleavage system protein H - Aquifex aeolicus
>gi|2983578|gb|AAC07150.1| (AE000723) glycine cleavage
system protein H [Aquifex aeolicus]
Length = 171
Score = 146 bits (364), Expect = 1e-34
Identities = 76/132 (57%), Positives = 97/132 (72%), Gaps = 3/132 (2%)
Query: 14 VGEYKVKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVL 73
V +Y VK YYTKEHEW +V ++G VGITDYAQK+LGDI YV+LPE GKEV G+ L
Sbjct: 6 VEDYLVKGDRYYTKEHEWVRV-KNGFAEVGITDYAQKQLGDIVYVDLPEKGKEVDAGDTL 64
Query: 74 CEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYGA-WIAKIKPNNLEEELKELM 132
+ESVK V+ VYAPV+G V+EVNE+L D P IN+DPY A WIA I+ + E+++LM
Sbjct: 65 ANIESVKNVAPVYAPVTGTVVEVNEDLKDEPGIINDDPYEAGWIAVIEMKD-PTEVEDLM 123
Query: 133 DAEKYAEFLKSL 144
A+ YAE+LK +
Sbjct: 124 TAQDYAEYLKEI 135
>pir||F72403 glycine cleavage system H protein - Thermotoga maritima (strain
MSB8) >gi|4980710|gb|AAD35304.1|AE001706_3 (AE001706)
glycine cleavage system H protein [Thermotoga maritima]
Length = 124
Score = 134 bits (335), Expect = 3e-31
Identities = 64/117 (54%), Positives = 91/117 (77%), Gaps = 3/117 (2%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
YTK HEW + ED VGIT++AQ++LGD+ YV+LPEVG+EVKKGEV+ +ESVKA ++
Sbjct: 6 YTKTHEWVSI-EDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAAD 64
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNNLEEELKELMDAEKYAEF 140
VYAP+SG+++EVNE+L PE IN+DP G W+ K++ ++ E EL++L+D + Y EF
Sbjct: 65 VYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD-EGELEDLLDEQAYQEF 120
>pir||G72691 probable glycine cleavage system H protein APE0951 - Aeropyrum
pernix (strain K1) >gi|5104620|dbj|BAA79935.1|
(AP000060) 147aa long hypothetical glycine cleavage
system H protein [Aeropyrum pernix]
Length = 147
Score = 134 bits (333), Expect = 6e-31
Identities = 67/127 (52%), Positives = 93/127 (72%), Gaps = 3/127 (2%)
Query: 17 YKVKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEV 76
+ +++ L YT+ EWA+ LEDG VGITD+AQKEL DI VELPE G++VKKGE + V
Sbjct: 19 FLLRKDLRYTESDEWAR-LEDGVATVGITDFAQKELKDIVGVELPEKGRKVKKGEAVATV 77
Query: 77 ESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNNLEEELKELMDAE 135
ES+KA +++YAP+SGE+++VNE+L D PE IN+DPYG WI KIK + E + L+ E
Sbjct: 78 ESIKATADIYAPLSGEIVDVNEKLLDQPELINDDPYGEGWIFKIKVED-PGEFESLLTPE 136
Query: 136 KYAEFLK 142
+Y E ++
Sbjct: 137 QYVESVR 143
>dbj|BAB07203.1| (AP001518) glycine cleavage system protein H [Bacillus halodurans]
Length = 128
Score = 132 bits (330), Expect = 1e-30
Identities = 67/120 (55%), Positives = 90/120 (74%), Gaps = 3/120 (2%)
Query: 23 LYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAV 82
L Y++EHEW +V E V +GITD+AQ ELGDI +VELPEVG EV+ E VESVK V
Sbjct: 8 LKYSEEHEWVKV-EGDKVRIGITDFAQSELGDIVFVELPEVGDEVEADEPFGSVESVKTV 66
Query: 83 SEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEFL 141
SE+YAPVSG+V+EVNEEL D+PE +NE PY AW+ ++P++ +++ELM A++Y E +
Sbjct: 67 SELYAPVSGKVVEVNEELDDNPEYVNESPYEKAWMIVVEPSD-ASQVEELMSADEYKEMI 125
>gb|AAK41202.1| Glycine cleavage system protein H [Sulfolobus solfataricus]
Length = 137
Score = 131 bits (326), Expect = 4e-30
Identities = 63/135 (46%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Query: 9 VNMIEVGEYKVKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVK 68
+N ++VG Y V YT+ EW + D ++GITDYAQK+L DI +ELP++ KEVK
Sbjct: 1 MNEMKVGRYVVLTDRLYTETDEWVVLSNDNVAVIGITDYAQKKLRDIVGIELPQLQKEVK 60
Query: 69 KGEVLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNNLEEE 127
GE + +ESVKA +++++P+SG ++EVN +L + PE IN+DPYG WI K+K + L EE
Sbjct: 61 AGESVGVIESVKAAADIFSPLSGIIVEVNNKLLEHPEIINKDPYGEGWIFKLKASKLSEE 120
Query: 128 LKELMDAEKYAEFLK 142
++L+ EKY E +K
Sbjct: 121 KEKLLSPEKYIEKIK 135
>pir||H82479 glycine cleavage system H protein VCA0277 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657674|gb|AAF96187.1| (AE004367) glycine cleavage
system H protein [Vibrio cholerae]
Length = 126
Score = 131 bits (325), Expect = 5e-30
Identities = 63/116 (54%), Positives = 88/116 (75%), Gaps = 2/116 (1%)
Query: 23 LYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAV 82
L +T+ HEW + DGTV +GI+++AQ+ LGD+ +VELPE+ E+ G+ VESVKA
Sbjct: 5 LKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAA 64
Query: 83 SEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
S++YAPV+G VIEVNE+L +SPE INE+PY G WI K+K ++ +ELK+L DAE+Y
Sbjct: 65 SDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSD-PDELKDLKDAEEY 119
>sp|P23884|GCSH_ECOLI GLYCINE CLEAVAGE SYSTEM H PROTEIN >gi|1073396|pir||A56623 glycine
cleavage system protein H - Escherichia coli
>gi|146122|gb|AAA68887.1| (M57690) H-protein
[Escherichia coli] >gi|403344|emb|CAA52145.1| (X73958) H
protein [Escherichia coli] >gi|882434|gb|AAA69072.1|
(U28377) ORF_f129 [Escherichia coli]
>gi|1789271|gb|AAC75942.1| (AE000374) in glycine
cleavage complex, carrier of aminomethyl moiety via
covalently bound lipoyl cofactor [Escherichia coli K12]
Length = 129
Score = 130 bits (324), Expect = 6e-30
Identities = 65/121 (53%), Positives = 86/121 (70%), Gaps = 2/121 (1%)
Query: 23 LYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAV 82
L Y+KEHEW + DGT VGIT++AQ+ LGD+ +V+LPEVG V G+ ESVKA
Sbjct: 8 LKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAA 67
Query: 83 SEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEFL 141
S++YAPVSGE++ VN+ LSDSPE +N +PY G WI KIK ++ E EL+ L+DA Y L
Sbjct: 68 SDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASD-ESELESLLDATAYEALL 126
Query: 142 K 142
+
Sbjct: 127 E 127
>pir||F82994 glycine cleavage system protein H1 PA5214 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951521|gb|AAG08599.1|AE004934_6 (AE004934) glycine
cleavage system protein H1 [Pseudomonas aeruginosa]
Length = 129
Score = 130 bits (324), Expect = 6e-30
Identities = 59/115 (51%), Positives = 85/115 (73%), Gaps = 1/115 (0%)
Query: 23 LYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAV 82
L Y + HEWA++ DG+V VGI+D+AQ+ LGD+ ++ELPE+GK + G+ VESVKA
Sbjct: 8 LRYAQSHEWARLEADGSVTVGISDHAQEALGDVVFIELPELGKTLAAGQEAGVVESVKAA 67
Query: 83 SEVYAPVSGEVIEVNEELSDSPEKINEDPYGAWIAKIKPNNLEEELKELMDAEKY 137
S++Y+P+ GEVI +NE L+D+PE +N DPY +W K+KP+N EL +L+DA Y
Sbjct: 68 SDIYSPIGGEVIAINEALADTPEDVNNDPYVSWFFKLKPSN-PAELDKLLDAAGY 121
>pir||A70021 glycine cleavage system protein H homolog yusH - Bacillus subtilis
>gi|2635776|emb|CAB15269.1| (Z99120) similar to glycine
cleavage system protein H [Bacillus subtilis]
Length = 127
Score = 126 bits (313), Expect = 1e-28
Identities = 64/122 (52%), Positives = 87/122 (70%), Gaps = 3/122 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
+ + L Y+ EHEW +V E +GIT +AQ ELGDI +VELPEVG E+K E VES
Sbjct: 3 IPKDLRYSGEHEWVKV-EGEKARIGITHFAQSELGDIVFVELPEVGAEIKADEPFGSVES 61
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VK VSE+YAP++G V+EVNE+L DSPE +NE PY AW+ ++P++ E+++LM AE+Y
Sbjct: 62 VKTVSELYAPINGTVVEVNEDLDDSPEFVNESPYEKAWMIVVEPSD-ASEIEKLMTAEQY 120
Query: 138 AE 139
E
Sbjct: 121 EE 122
>pir||B81183 glycine cleavage system H protein NMB0575 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225803|gb|AAF41003.1| (AE002413) glycine cleavage
system H protein [Neisseria meningitidis MC58]
Length = 128
Score = 124 bits (308), Expect = 5e-28
Identities = 63/117 (53%), Positives = 81/117 (68%), Gaps = 2/117 (1%)
Query: 23 LYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAV 82
L Y HEW ++ EDGT+ VGIT +AQ+ LGDI +VELPEVG + E VESVKA
Sbjct: 9 LKYVASHEWLRLEEDGTITVGITHHAQELLGDIVFVELPEVGANLAAEEQAGVVESVKAA 68
Query: 83 SEVYAPVSGEVIEVNEELSDSPEKINEDPYGA-WIAKIKPNNLEEELKELMDAEKYA 138
S+VYAP++GEV+ VNE+L +PE N DPYGA W K+KP N+ + L+ AE+YA
Sbjct: 69 SDVYAPIAGEVVAVNEDLPSAPETANSDPYGAGWFFKLKPANV-ADYDSLLTAEQYA 124
>sp|Q50607|GCSH_MYCTU PROBABLE GLYCINE CLEAVAGE SYSTEM H PROTEIN >gi|7441690|pir||C70721
probable gcvH protein - Mycobacterium tuberculosis
(strain H37RV) >gi|1483545|emb|CAB01475.1| (Z78020) gcvH
[Mycobacterium tuberculosis]
Length = 134
Score = 123 bits (307), Expect = 6e-28
Identities = 62/125 (49%), Positives = 83/125 (65%), Gaps = 6/125 (4%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
+ L+YT EHEW + D TV VGITDYAQ LGD+ +V+LP +G V GE EVES
Sbjct: 4 IPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVES 63
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYGA-WIAKIKPNN-----LEEELKELM 132
K+VS++YAP+SG+V EVN +L +P+ +N DPYGA W+ I+ ++ LE L L+
Sbjct: 64 TKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLL 123
Query: 133 DAEKY 137
DAE Y
Sbjct: 124 DAEAY 128
>pir||H81919 probable glycine cleavage system component H NMA0759 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379480|emb|CAB84042.1| (AL162754) putative glycine
cleavage system component H [Neisseria meningitidis
Z2491]
Length = 128
Score = 121 bits (300), Expect = 4e-27
Identities = 62/117 (52%), Positives = 80/117 (67%), Gaps = 2/117 (1%)
Query: 23 LYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAV 82
L Y HEW ++ EDG + VGIT +AQ+ LGDI +VELPEVG + E VESVKA
Sbjct: 9 LKYVASHEWLRLEEDGIITVGITHHAQELLGDIVFVELPEVGANLAAEEQAGVVESVKAA 68
Query: 83 SEVYAPVSGEVIEVNEELSDSPEKINEDPYGA-WIAKIKPNNLEEELKELMDAEKYA 138
S+VYAP++GEV+ VNE+L +PE N DPYGA W K+KP N+ + L+ AE+YA
Sbjct: 69 SDVYAPIAGEVVAVNEDLPSAPETANSDPYGAGWFFKLKPANV-ADYDVLLTAEQYA 124
>emb|CAC12487.1| (AL445067) probable glycine cleavage system H protein [Thermoplasma
acidophilum]
Length = 124
Score = 119 bits (296), Expect = 1e-26
Identities = 60/126 (47%), Positives = 88/126 (69%), Gaps = 7/126 (5%)
Query: 18 KVKEGLYYTKEHEWAQVLEDG-TVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEV 76
+V EGL YTK HEW + +DG T +GITDYAQ ++ DI YV+LP+VG + K G+VL +
Sbjct: 5 EVPEGLNYTKTHEWYR--KDGNTATIGITDYAQSQMTDIVYVDLPKVGDKKKAGDVLLTI 62
Query: 77 ESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYGAWIAKIKPNNLEEELKELMDAEK 136
ESVK+ +VY+P++G V VNEE++ PE IN+DPYG+W+ K+ +E E E + A +
Sbjct: 63 ESVKSAEDVYSPITGTVTAVNEEVAKHPESINKDPYGSWLVKMA---IESE-GEHLSASE 118
Query: 137 YAEFLK 142
Y + ++
Sbjct: 119 YRKLIQ 124
>pir||T44759 glycine cleavage system protein H [imported] - Mycobacterium leprae
>gi|2578384|emb|CAA15469.1| (AL008609) glycine cleavage
system h protein [Mycobacterium leprae]
Length = 132
Score = 119 bits (296), Expect = 1e-26
Identities = 59/123 (47%), Positives = 82/123 (65%), Gaps = 4/123 (3%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
+ L+YT EHEW + + TV VG+TD+AQ LGD+ +V+LPEVG E+ G+ EVES
Sbjct: 4 IPSDLHYTAEHEWIRRSREDTVRVGLTDFAQSTLGDVVFVQLPEVGAELAAGKSFGEVES 63
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYGA-WIAKIKPNN---LEEELKELMDA 134
K+VS++YAPVSG V VN +L SP+ +N DPYGA W+ + ++ LE + L+DA
Sbjct: 64 TKSVSDLYAPVSGTVSAVNTDLEGSPQLVNSDPYGAGWLLDVHVSDVGALESAIATLLDA 123
Query: 135 EKY 137
E Y
Sbjct: 124 ETY 126
>pir||G75352 glycine cleavage system H protein - Deinococcus radiodurans
(strain R1) >gi|6459583|gb|AAF11361.1|AE002021_10
(AE002021) glycine cleavage system H protein
[Deinococcus radiodurans]
Length = 120
Score = 118 bits (294), Expect = 2e-26
Identities = 62/114 (54%), Positives = 82/114 (71%), Gaps = 9/114 (7%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
Y HEW + +DGTV GI+D+AQ++LGD+ YVELPEVG+EVK GE + VESVK S+
Sbjct: 10 YAASHEW--LTQDGTV--GISDHAQEQLGDVVYVELPEVGREVKAGEAVAVVESVKTASD 65
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
+YAP SG + VN+ELS SPEK+NE PY G W+ K+ ++ EE +L+DA Y
Sbjct: 66 IYAPASGTITAVNDELSGSPEKVNESPYEGGWLFKL---DVTEE-GDLLDAAAY 115
>pir||E82837 glycine cleavage H protein XF0181 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9104980|gb|AAF82994.1|AE003872_5
(AE003872) glycine cleavage H protein [Xylella
fastidiosa]
Length = 144
Score = 118 bits (294), Expect = 2e-26
Identities = 57/122 (46%), Positives = 81/122 (65%), Gaps = 2/122 (1%)
Query: 23 LYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAV 82
L + K HEW ++ ++ +VGI+D+AQ LGD+ YVELP +G + G +ESVKA
Sbjct: 21 LKFLKSHEWVRIEDNNRAIVGISDHAQNLLGDLVYVELPNIGDHLDAGTTAAVIESVKAA 80
Query: 83 SEVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNNLEEELKELMDAEKYAEFL 141
S++Y+PV+G+VIEVN LSD PE INEDPYG WI I+ EE+ +L+ + Y + L
Sbjct: 81 SDIYSPVTGKVIEVNTTLSDKPETINEDPYGEGWIMVIE-MQAPEEISDLLSPDDYTKVL 139
Query: 142 KS 143
+S
Sbjct: 140 ES 141
>pir||T34751 glycine cleavage system protein H - Streptomyces coelicolor
>gi|3402238|emb|CAA20174.1| (AL031184) glycine cleavage
system H protein [Streptomyces coelicolor A3(2)]
Length = 125
Score = 115 bits (284), Expect = 3e-25
Identities = 54/119 (45%), Positives = 80/119 (66%), Gaps = 4/119 (3%)
Query: 23 LYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAV 82
L Y+KEHEW EDG VGIT++A LGD+ +V+LPEVG V GE E+ES K+V
Sbjct: 7 LRYSKEHEWLSGAEDGVSTVGITEHAANALGDVVFVQLPEVGDSVTAGETCGELESTKSV 66
Query: 83 SEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEF 140
S++Y+PVSGE+ EVNE++ + P +N P+ G W+ K++ + +E +L+ A++Y F
Sbjct: 67 SDLYSPVSGEITEVNEDVVNDPSLVNSAPFEGGWLFKVR---ITDEPADLLSADEYTAF 122
>gi|6319272 H-protein subunit of the glycine cleavage system; Gcv3p
[Saccharomyces cerevisiae]
>gi|731280|sp|P39726|GCSH_YEAST GLYCINE CLEAVAGE SYSTEM
H PROTEIN PRECURSOR >gi|1077478|pir||S51975 FUN40
protein - yeast (Saccharomyces cerevisiae)
>gi|595540|gb|AAC04987.1| (U12980) Gcv3p: H-protein
subunit of the glycine cleavage system [Saccharomyces
cerevisiae]
Length = 177
Score = 113 bits (280), Expect = 9e-25
Identities = 57/124 (45%), Positives = 77/124 (61%), Gaps = 3/124 (2%)
Query: 21 EGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVK 80
+ + YT +HEW V +D T VGIT YA LGD YVELPEVG E+ +GE L +ESVK
Sbjct: 50 QAVRYTSQHEWIAVHQDKTAFVGITKYATDSLGDATYVELPEVGTEISQGESLGSIESVK 109
Query: 81 AVSEVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNN--LEEELKELMDAEKY 137
+ SE+Y P G V E+N L ++P +NEDP G W+ K+K E+++ LM E+Y
Sbjct: 110 SASEIYQPADGTVEEINTNLEENPGVVNEDPMGDGWLVKMKLGEGVNVEQVEGLMSLEQY 169
Query: 138 AEFL 141
+ L
Sbjct: 170 EKTL 173
>pir||D70443 glycine cleavage system protein H - Aquifex aeolicus
>gi|2983993|gb|AAC07539.1| (AE000749) glycine cleavage
system protein H [Aquifex aeolicus]
Length = 161
Score = 113 bits (280), Expect = 9e-25
Identities = 62/135 (45%), Positives = 86/135 (62%), Gaps = 5/135 (3%)
Query: 13 EVGEYK---VKEGLYYTKEHE-WAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVK 68
+V EY+ + + LYY E++ W +V EDGTV VG+TD Q G I + + GK VK
Sbjct: 4 KVEEYRGCVIPKDLYYDIENQVWFKVNEDGTVTVGVTDIGQARAGKIINIRIKPPGKYVK 63
Query: 69 KGEVLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNNLEEE 127
KG+ + +ES K V A + GEV+E NE+L D P+ INEDPYG WIAK+KP NLE +
Sbjct: 64 KGKPVASLESGKWAGPVPADIEGEVVERNEKLFDKPDLINEDPYGEGWIAKLKPANLERD 123
Query: 128 LKELMDAEKYAEFLK 142
L++L+ E+ + LK
Sbjct: 124 LQDLVTGEEAVQKLK 138
>gb|AAC61829.1| (AC004667) glycine decarboxylase complex H-protein [Arabidopsis
thaliana]
Length = 156
Score = 113 bits (280), Expect = 9e-25
Identities = 57/123 (46%), Positives = 84/123 (67%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V + L Y HEW ++ + GITD+AQ LGD+ YVELP+VG V +G+ VES
Sbjct: 28 VLKDLKYADSHEWVKI-DGNKATFGITDHAQDHLGDVVYVELPDVGHSVSQGKSFGAVES 86
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S++ +PVSG+V+EVNEEL++SP +N PY WI K++ ++ E ++LMD++KY
Sbjct: 87 VKATSDINSPVSGKVVEVNEELTESPGLVNSSPYEQGWIIKVELSD-AGEAEKLMDSDKY 145
Query: 138 AEF 140
++F
Sbjct: 146 SKF 148
>pir||S40214 H-protein - Flaveria pringlei >gi|2147453|pir||S60195 glycine
cleavage system protein H precursor (clone HFC1) -
Flaveria cronquistii >gi|7441692|pir||S60199 glycine
cleavage system protein H precursor (clone HFP20) -
Flaveria pringlei >gi|437993|emb|CAA81073.1| (Z25854)
H-protein [Flaveria cronquistii]
>gi|437999|emb|CAA81074.1| (Z25855) H-protein [Flaveria
pringlei] >gi|3688299|emb|CAB16912.1| (Z99763) H-protein
[Flaveria pringlei]
Length = 162
Score = 112 bits (278), Expect = 2e-24
Identities = 57/123 (46%), Positives = 79/123 (63%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +V+LPE G V K VES
Sbjct: 34 VLDGLKYANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVDLPETGGSVTKATGFGAVES 92
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL LM A++Y
Sbjct: 93 VKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSN-PSELDSLMGAKEY 151
Query: 138 AEF 140
+F
Sbjct: 152 TKF 154
>sp|P49359|GCSH_FLAPR GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR >gi|542101|pir||S40215
H-protein - Flaveria pringlei >gi|2119599|pir||S60194
glycine cleavage system protein H precursor (clone HFP4)
- Flaveria pringlei >gi|438001|emb|CAA81075.1| (Z25856)
H-protein [Flaveria pringlei]
>gi|3688301|emb|CAB16913.1| (Z99764) H-protein [Flaveria
pringlei]
Length = 162
Score = 112 bits (278), Expect = 2e-24
Identities = 57/123 (46%), Positives = 79/123 (63%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +V+LPE G V K VES
Sbjct: 34 VLDGLKYANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVES 92
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL LM A++Y
Sbjct: 93 VKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSN-PSELDSLMGAKEY 151
Query: 138 AEF 140
+F
Sbjct: 152 TKF 154
>sp|Q39732|GCSH_FLAAN GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR >gi|1085826|pir||S49248
glycine cleavage system protein H precursor - Flaveria
anomala >gi|547558|emb|CAA85761.1| (Z37524) H-protein
[Flaveria anomala]
Length = 162
Score = 112 bits (278), Expect = 2e-24
Identities = 57/123 (46%), Positives = 79/123 (63%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +V+LPE G V K VES
Sbjct: 34 VLDGLKYANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVES 92
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL LM A++Y
Sbjct: 93 VKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSN-PSELDSLMGAKEY 151
Query: 138 AEF 140
+F
Sbjct: 152 TKF 154
>emb|CAB16710.1| (Z99530) H protein [Flaveria anomala]
Length = 162
Score = 112 bits (278), Expect = 2e-24
Identities = 57/123 (46%), Positives = 79/123 (63%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +V+LPE G V K VES
Sbjct: 34 VLDGLKYANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVES 92
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL LM A++Y
Sbjct: 93 VKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSN-PSELDSLMGAKEY 151
Query: 138 AEF 140
+F
Sbjct: 152 TKF 154
>pir||S60198 glycine cleavage system protein H precursor (clone HFP13) -
Flaveria pringlei (fragment) >gi|547500|emb|CAA85759.1|
(Z37522) H-protein [Flaveria pringlei]
Length = 161
Score = 111 bits (276), Expect = 3e-24
Identities = 56/123 (45%), Positives = 80/123 (64%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +V+LP+ G V K VES
Sbjct: 33 VLDGLKYASSHEWVKH-EGSVATIGITDHAQDHLGEVVFVDLPDTGGSVTKATGFGAVES 91
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL+ LM A++Y
Sbjct: 92 VKATSDVNSPISGEIVEVNTKLSETPGLINSSPYEDGWMIKVKPSN-PSELESLMGAKEY 150
Query: 138 AEF 140
+F
Sbjct: 151 TKF 153
>emb|CAB16914.1| (Z99765) H-Protein precursor [Flaveria pringlei]
Length = 162
Score = 111 bits (276), Expect = 3e-24
Identities = 56/123 (45%), Positives = 80/123 (64%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +V+LP+ G V K VES
Sbjct: 34 VLDGLKYASSHEWVKH-EGSVATIGITDHAQDHLGEVVFVDLPDTGGSVTKATGFGAVES 92
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL+ LM A++Y
Sbjct: 93 VKATSDVNSPISGEIVEVNTKLSETPGLINSSPYEDGWMIKVKPSN-PSELESLMGAKEY 151
Query: 138 AEF 140
+F
Sbjct: 152 TKF 154
>gb|AAF81345.1|AC007767_25 (AC007767) Identical to a glycine cleavage system H-protein
precursor from Arabidopsis thaliana gb|P25855. It
contains a glycine cleavage H-protein domain PF|01597.
ESTs gb|R90208, gb|AI994794, gb|AA605324, gb|N38240,
gb|AV533336, gb|AV534187, gb|AA5>
Length = 166
Score = 111 bits (276), Expect = 3e-24
Identities = 58/123 (47%), Positives = 79/123 (64%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V EGL Y HEW + E +GITD+AQ LG++ +VELPE V K + VES
Sbjct: 38 VLEGLKYANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVES 96
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA SE+ +P+SGEVIEVN +L++SP IN PY W+ K+KP++ EL+ LM ++Y
Sbjct: 97 VKATSEILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSS-PAELEALMGPKEY 155
Query: 138 AEF 140
+F
Sbjct: 156 TKF 158
>sp|P46485|GCSH_FLATR GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR >gi|1076701|pir||S49232
H-protein - Flaveria trinervia
>gi|547502|emb|CAA85760.1| (Z37523) H-protein [Flaveria
trinervia]
Length = 165
Score = 111 bits (275), Expect = 3e-24
Identities = 57/123 (46%), Positives = 79/123 (63%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +VELPEVG V K VES
Sbjct: 36 VLDGLKYANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVES 94
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +L+ +P IN+ PY W+ K+KP+N EL LM ++Y
Sbjct: 95 VKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSN-PSELDSLMGPKEY 153
Query: 138 AEF 140
+F
Sbjct: 154 TKF 156
>pir||S57665 H-protein precursor - Flaveria trinervia >gi|886868|emb|CAA88734.1|
(Z48797) H-protein precursor of glycine cleavage system
[Flaveria trinervia]
Length = 163
Score = 111 bits (275), Expect = 3e-24
Identities = 57/123 (46%), Positives = 79/123 (63%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +VELPEVG V K VES
Sbjct: 34 VLDGLKYANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVES 92
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +L+ +P IN+ PY W+ K+KP+N EL LM ++Y
Sbjct: 93 VKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSN-PSELDSLMGPKEY 151
Query: 138 AEF 140
+F
Sbjct: 152 TKF 154
>sp|P93255|GCSH_MESCR GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR >gi|7441701|pir||T12561
glycine cleavage system protein H precursor - common ice
plant >gi|1724106|gb|AAB38501.1| (U79768) glycine
cleavage system protein H precursor [Mesembryanthemum
crystallinum]
Length = 163
Score = 111 bits (274), Expect = 5e-24
Identities = 60/124 (48%), Positives = 82/124 (65%), Gaps = 6/124 (4%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVL-VGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVE 77
V +GL Y HEW V G+V +GITD+AQ LGD+ + ELPE G V G+ VE
Sbjct: 37 VLDGLKYASSHEW--VKHGGSVATIGITDHAQGHLGDVVFAELPE-GGAVSAGKPFASVE 93
Query: 78 SVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEK 136
SVKA S+V +P+SGE++EVN +LSDSP +N PY W+ K+KP+N EL+ LM +++
Sbjct: 94 SVKATSDVNSPISGEIVEVNTKLSDSPGLLNSSPYEEGWMVKVKPSN-PAELESLMGSKE 152
Query: 137 YAEF 140
Y +F
Sbjct: 153 YTKF 156
>sp|P16048|GCSH_PEA GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR >gi|1070638|pir||GCPMH
glycine cleavage system protein H precursor [validated]
- garden pea >gi|20737|emb|CAA45978.1| (X64726) H
protein [Pisum sativum] >gi|169093|gb|AAA33668.1|
(J05164) H-protein of glycine decarboxylase precursor
(EC 2.1.2.10) [Pisum sativum] >gi|287815|emb|CAA37704.1|
(X53656) H-protein [Pisum sativum]
Length = 165
Score = 110 bits (273), Expect = 6e-24
Identities = 59/123 (47%), Positives = 79/123 (63%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +VELPE G V KG+ VES
Sbjct: 37 VLDGLKYAPSHEWVKH-EGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVES 95
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGEVIEVN L+ P IN PY W+ KIKP + +EL+ L+ A++Y
Sbjct: 96 VKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTS-PDELESLLGAKEY 154
Query: 138 AEF 140
+F
Sbjct: 155 TKF 157
>pdb|1DXM|A Chain A, Reduced Form Of The H Protein From Glycine Decarboxylase
Complex >gi|9955326|pdb|1DXM|B Chain B, Reduced Form Of
The H Protein From Glycine Decarboxylase Complex
>gi|999900|pdb|1HTP| H-Protein (E.C.1.4.4.2) Complexed
With Lipoic Acid Charged In Methylamine
>gi|1065301|pdb|1HPC|A Chain A, H Protein Of The Glycine
Cleavage System (Aminomethyltransferase) (E.C.1.4.4.2)
>gi|1065302|pdb|1HPC|B Chain B, H Protein Of The Glycine
Cleavage System (Aminomethyltransferase) (E.C.1.4.4.2)
Length = 131
Score = 110 bits (273), Expect = 6e-24
Identities = 59/123 (47%), Positives = 79/123 (63%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +VELPE G V KG+ VES
Sbjct: 3 VLDGLKYAPSHEWVKH-EGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVES 61
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGEVIEVN L+ P IN PY W+ KIKP + +EL+ L+ A++Y
Sbjct: 62 VKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTS-PDELESLLGAKEY 120
Query: 138 AEF 140
+F
Sbjct: 121 TKF 123
>pir||T22474 hypothetical protein F52A8.5 - Caenorhabditis elegans
>gi|3877397|emb|CAA95820.1| (Z71263) predicted using
Genefinder~Similarity to Pea glycine cleavage system H
protein (SW:GCSH_PEA), contains similarity to Pfam
domain: PF01597 (Glycine cleavage H-protein),
Score=272.0, E-value=2.5e-78, N=1~cDNA EST yk56h11.5
comes from this gene~c>
Length = 146
Score = 110 bits (273), Expect = 6e-24
Identities = 55/122 (45%), Positives = 84/122 (68%), Gaps = 3/122 (2%)
Query: 22 GLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKA 81
G YTK+HEW V E+G VGITD+A ++LGD+ ++ELP+ G E+ KG+ VESVKA
Sbjct: 21 GRLYTKKHEWVLV-ENGVGTVGITDFATEQLGDVVFIELPDEGTEISKGDSTGAVESVKA 79
Query: 82 VSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEF 140
S++YAP+SG V + N +L + IN+ P+ W+ K+K + +EL++L++ E+YA+F
Sbjct: 80 ASDIYAPISGTVTQKNVKLEEEAGLINKSPFEKGWLYKLKVKS-ADELEKLLNEEQYAKF 138
Query: 141 LK 142
K
Sbjct: 139 KK 140
>pir||S49242 H-protein - Flaveria chloraefolia >gi|1085829|pir||S49249 glycine
cleavage system protein H - Flaveria floridana
(fragment) >gi|7441689|pir||S49243 H-protein - Flaveria
linearis >gi|547496|emb|CAA85757.1| (Z37520) H-protein
[Flaveria chloraefolia] >gi|547498|emb|CAA85758.1|
(Z37521) H-protein [Flaveria linearis]
>gi|547560|emb|CAA85766.1| (Z37528) H-protein [Flaveria
floridana]
Length = 152
Score = 110 bits (272), Expect = 8e-24
Identities = 57/120 (47%), Positives = 77/120 (63%), Gaps = 3/120 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E VGITD+AQ LG++ +V+LPE G V K VES
Sbjct: 34 VLDGLKYANSHEWVKH-EGSVATVGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVES 92
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL LM A++Y
Sbjct: 93 VKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSN-PSELDSLMGAKEY 151
>sp|P49360|GCSH_FLAPU GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR >gi|1085831|pir||S49251
glycine cleavage system protein H - Flaveria pubescens
(fragment) >gi|547564|emb|CAA85768.1| (Z37530) H-protein
[Flaveria pubescens]
Length = 152
Score = 110 bits (272), Expect = 8e-24
Identities = 57/120 (47%), Positives = 77/120 (63%), Gaps = 3/120 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E VGITD+AQ LG++ +V+LPE G V K VES
Sbjct: 34 VLDGLKYANSHEWVKH-EGSVATVGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVES 92
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL LM A++Y
Sbjct: 93 VKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSN-PSELDSLMGAKEY 151
>pir||S49250 glycine cleavage system protein H - Flaveria palmeri (fragment)
>gi|547562|emb|CAA85767.1| (Z37529) H-protein [Flaveria
palmeri]
Length = 154
Score = 109 bits (271), Expect = 1e-23
Identities = 56/120 (46%), Positives = 78/120 (64%), Gaps = 3/120 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +VELPE G V K VES
Sbjct: 36 VLDGLKYANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVELPEAGGSVTKTTSFGAVES 94
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +L+++P IN+ PY W+ K+KP+N EL LM A++Y
Sbjct: 95 VKATSDVNSPISGEIVEVNSKLTETPGLINKSPYEDGWMIKVKPSN-PSELDSLMGAKEY 153
>gb|AAF13277.1|AF203725_1 (AF203725) pumpless protein [Drosophila melanogaster]
Length = 165
Score = 109 bits (270), Expect = 1e-23
Identities = 54/120 (45%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
YT +HEW +V+ +VGI+ YAQ+ LGD+ + +LPE G E+K+ + +ESVKA SE
Sbjct: 43 YTNKHEWVEVVSGSNAIVGISSYAQEALGDVVFAQLPEPGTELKQDDECGALESVKAASE 102
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEFLKS 143
VY+PVSG+VIE N E+ D+P +N Y W+ K+ N +EL+ LM ++Y FL S
Sbjct: 103 VYSPVSGKVIEKNAEVEDTPALVNSSCYEKGWLFKVDLKN-PKELEALMTEDQYKAFLSS 161
>pir||T20284 hypothetical protein D1025.2 - Caenorhabditis elegans
>gi|3875341|emb|CAB05472.1| (Z83103) predicted using
Genefinder~contains similarity to Pfam domain: PF01597
(Glycine cleavage H-protein), Score=264.7,
E-value=4e-76, N=1 [Caenorhabditis elegans]
Length = 148
Score = 109 bits (269), Expect = 2e-23
Identities = 54/120 (45%), Positives = 81/120 (67%), Gaps = 3/120 (2%)
Query: 22 GLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKA 81
G YTK+HEW V+ VGITD+A ++LGD+ ++ELPE G E++KG+ VESVKA
Sbjct: 23 GRLYTKKHEWI-VVNQSVGTVGITDFATEQLGDVVFIELPEAGVEIEKGDSTGAVESVKA 81
Query: 82 VSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEF 140
S++YAPVSG+++E N +L D P IN+ P W+ +++ + E+L EL+ E+Y +F
Sbjct: 82 ASDIYAPVSGKILEKNTKLEDEPGIINKSPLEKGWLYRLEITS-NEQLNELLTEEQYNKF 140
>pir||S49230 glycine cleavage system protein H precursor (clone HFC2) - Flaveria
cronquistii >gi|547519|emb|CAA85755.1| (Z37518)
H-protein [Flaveria cronquistii]
Length = 152
Score = 108 bits (268), Expect = 2e-23
Identities = 55/120 (45%), Positives = 78/120 (64%), Gaps = 3/120 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +V+LP+ G V K VES
Sbjct: 34 VLDGLKYATSHEWVKH-EGSVATIGITDHAQDHLGEVVFVDLPDTGGSVTKATGFGAVES 92
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL+ LM A++Y
Sbjct: 93 VKATSDVNSPISGEIVEVNTKLSETPGLINSSPYEDGWMIKVKPSN-PSELESLMGAKEY 151
>prf||1923203A H protein [Pisum sativum]
Length = 131
Score = 108 bits (267), Expect = 3e-23
Identities = 58/123 (47%), Positives = 78/123 (63%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +VELPE G V KG+ VES
Sbjct: 3 VLDGLKYAPSHEWVKH-EGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVES 61
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
V A S+V +P+SGEVIEVN L+ P IN PY W+ KIKP + +EL+ L+ A++Y
Sbjct: 62 VXATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTS-PDELESLLGAKEY 120
Query: 138 AEF 140
+F
Sbjct: 121 TKF 123
>pir||T02072 probable glycine cleavage system protein H - rice
>gi|2570497|gb|AAB82134.1| (AF022731) H protein subunit
of glycine decarboxylase [Oryza sativa]
Length = 162
Score = 108 bits (267), Expect = 3e-23
Identities = 52/106 (49%), Positives = 73/106 (68%), Gaps = 4/106 (3%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVL-VGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVE 77
V +GL + HEW V DG+V +GITD+AQ LG + +VELPE G +V +G C VE
Sbjct: 37 VLDGLKCSSSHEW--VKNDGSVATIGITDHAQGHLGXVVFVELPEAGAKVSQGSAFCNVE 94
Query: 78 SVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPN 122
SVK S++ +P+SGEV+EVN++LS++P IN PY W+ ++KPN
Sbjct: 95 SVKGTSDINSPISGEVVEVNDKLSETPRLINSSPYEDGWMIQVKPN 140
>sp|P25855|GCSH_ARATH GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR
>gi|166725|gb|AAA32802.1| (M82921) H-Protein precursor
[Arabidopsis thaliana] >gi|861215|gb|AAA87942.1|
(U27144) glycine decarboxylase complex H-protein
precursor [Arabidopsis thaliana]
>gi|3608151|gb|AAC36184.1| (AC005314) glycine
decarboxylase complex H-protein [Arabidopsis thaliana]
>gi|445119|prf||1908425A Gly decarboxylase:SUBUNIT=H
protein [Arabidopsis thaliana]
Length = 165
Score = 108 bits (266), Expect = 4e-23
Identities = 56/123 (45%), Positives = 79/123 (63%), Gaps = 3/123 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V EGL Y HEW + E +GIT +AQ LG++ +VELPE V K + VES
Sbjct: 37 VLEGLKYANSHEWVKH-EGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVES 95
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA SE+ +P+SGE+IEVN++L++SP IN PY W+ K+KP++ EL+ LM ++Y
Sbjct: 96 VKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSS-PAELESLMGPKEY 154
Query: 138 AEF 140
+F
Sbjct: 155 TKF 157
>pir||S49231 glycine cleavage system protein H precursor (clone HFC3) - Flaveria
cronquistii >gi|547521|emb|CAA85756.1| (Z37519)
H-protein [Flaveria cronquistii]
Length = 152
Score = 108 bits (266), Expect = 4e-23
Identities = 55/120 (45%), Positives = 77/120 (63%), Gaps = 3/120 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL + HEW + E +GITD+AQ LG++ +V+LPE G V K VES
Sbjct: 34 VLDGLKHANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVDLPETGGSVTKATGFGAVES 92
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKY 137
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL LM A++Y
Sbjct: 93 VKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSN-PSELDSLMGAKEY 151
>gb|AAF63472.1| (AF231451) H protein [Oryctolagus cuniculus]
Length = 173
Score = 107 bits (264), Expect = 7e-23
Identities = 54/121 (44%), Positives = 83/121 (67%), Gaps = 3/121 (2%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
+T++HEW E+G VGI+++AQ+ LGD+ Y LPEVG ++KK + +ESVKA SE
Sbjct: 53 FTEKHEWITT-ENGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQDEFGALESVKAASE 111
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEFLKS 143
+Y+P+SGEV E+NE L+++P +N+ Y W+ K+ +N EL ELM E Y +++KS
Sbjct: 112 LYSPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSN-PSELDELMSEEAYEKYIKS 170
Query: 144 L 144
+
Sbjct: 171 I 171
>gi|4758424 glycine cleavage system protein H (aminomethyl carrier) [Homo
sapiens] >gi|121079|sp|P23434|GCSH_HUMAN GLYCINE
CLEAVAGE SYSTEM H PROTEIN PRECURSOR
>gi|1070635|pir||GCHUH glycine cleavage system protein H
precursor - human >gi|184348|gb|AAA36011.1| (M69175)
H-protein [Homo sapiens] >gi|219671|dbj|BAA00625.1|
(D00723) hydrogen carrier protein precursor [Homo
sapiens]
Length = 173
Score = 105 bits (260), Expect = 2e-22
Identities = 53/121 (43%), Positives = 82/121 (66%), Gaps = 3/121 (2%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
+T++HEW E+G VGI+++AQ+ LGD+ Y LPEVG ++ K + +ESVKA SE
Sbjct: 53 FTEKHEWVTT-ENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQDEFGALESVKAASE 111
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEFLKS 143
+Y+P+SGEV E+NE L+++P +N+ Y W+ K+ +N EL ELM E Y +++KS
Sbjct: 112 LYSPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSN-PSELDELMSEEAYEKYIKS 170
Query: 144 L 144
+
Sbjct: 171 I 171
>emb|CAB56621.1| (Y17321) H protein [Rattus norvegicus]
Length = 169
Score = 105 bits (260), Expect = 2e-22
Identities = 55/120 (45%), Positives = 81/120 (66%), Gaps = 3/120 (2%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
+T++HEW +DG VGI+++AQ+ LGD+ Y LPEVG ++KK E +ESVKA SE
Sbjct: 51 FTEKHEWVTA-KDGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGGLESVKAASE 109
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEFLKS 143
+Y+P+SGEV EVNE L ++P +N+ Y W+ K+ ++ EL ELM E Y +++KS
Sbjct: 110 LYSPLSGEVTEVNEALPENPGLVNKSMYEDGWLIKMTLSD-PSELDELMSEEAYEKYVKS 168
>gi|11430254 glycine cleavage system protein H (aminomethyl carrier) [Homo
sapiens]
Length = 128
Score = 105 bits (260), Expect = 2e-22
Identities = 53/121 (43%), Positives = 82/121 (66%), Gaps = 3/121 (2%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
+T++HEW E+G VGI+++AQ+ LGD+ Y LPEVG ++ K + +ESVKA SE
Sbjct: 8 FTEKHEWVTT-ENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQDEFGALESVKAASE 66
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEFLKS 143
+Y+P+SGEV E+NE L+++P +N+ Y W+ K+ +N EL ELM E Y +++KS
Sbjct: 67 LYSPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSN-PSELDELMSEEAYEKYIKS 125
Query: 144 L 144
+
Sbjct: 126 I 126
>emb|CAC18507.1| (AL033531) dJ702J19.1 (glycine cleavage system protein H
(aminomethyl carrier)) [Homo sapiens]
Length = 173
Score = 105 bits (260), Expect = 2e-22
Identities = 53/121 (43%), Positives = 82/121 (66%), Gaps = 3/121 (2%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
+T++HEW E+G VGI+++AQ+ LGD+ Y LPEVG ++ K + +ESVKA SE
Sbjct: 53 FTEKHEWVTT-ENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQDEFGALESVKAASE 111
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEFLKS 143
+Y+P+SGEV E+NE L+++P +N+ Y W+ K+ +N EL ELM E Y +++KS
Sbjct: 112 LYSPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSN-PSELDELMSEEAYEKYIKS 170
Query: 144 L 144
+
Sbjct: 171 I 171
>sp|P20821|GCSH_BOVIN GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR >gi|1070637|pir||GCBOH
glycine cleavage system protein H precursor - bovine
>gi|163159|gb|AAA62710.1| (M58361) H-protein [Bos
taurus]
Length = 173
Score = 105 bits (259), Expect = 3e-22
Identities = 53/121 (43%), Positives = 82/121 (66%), Gaps = 3/121 (2%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
+T++HEW E+G VGI+++AQ+ LGD+ Y LPEVG ++ K E +ESVKA SE
Sbjct: 53 FTEKHEWVTT-ENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASE 111
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEFLKS 143
+Y+P+SGEV E+N+ L+++P +N+ Y W+ K+ +N EL ELM E Y +++KS
Sbjct: 112 LYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSN-PSELDELMSEEAYEKYIKS 170
Query: 144 L 144
+
Sbjct: 171 I 171
>sp|Q39733|GCSH_FLAAU GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR
>gi|1240036|emb|CAA94316.1| (Z70303) H protein [Flaveria
australasica]
Length = 143
Score = 105 bits (259), Expect = 3e-22
Identities = 52/109 (47%), Positives = 71/109 (64%), Gaps = 2/109 (1%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +VELPEVG V K VES
Sbjct: 36 VLDGLKYANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVES 94
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEE 126
VKA S+V +P+SGE++EVN +L+ +P IN+ PY W+ K+KP+N E
Sbjct: 95 VKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSE 143
>pir||S60197 H-protein precursor (clone HFC2) - Flaveria cronquistii (fragment)
Length = 141
Score = 105 bits (259), Expect = 3e-22
Identities = 54/117 (46%), Positives = 75/117 (63%), Gaps = 3/117 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +V+LP+ G V K VES
Sbjct: 27 VLDGLKYATSHEWVKH-EGSVATIGITDHAQDHLGEVVFVDLPDTGGSVTKATGFGAVES 85
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDA 134
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL+ LM A
Sbjct: 86 VKATSDVNSPISGEIVEVNTKLSETPGLINSSPYEDGWMIKVKPSN-PSELESLMGA 141
>pir||S60196 H-protein precursor (clone HFC3) - Flaveria cronquistii (fragment)
Length = 141
Score = 104 bits (257), Expect = 4e-22
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL + HEW + E +GITD+AQ LG++ +V+LPE G V K VES
Sbjct: 27 VLDGLKHANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVDLPETGGSVTKATGFGAVES 85
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDA 134
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+KP+N EL LM A
Sbjct: 86 VKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSN-PSELDSLMGA 141
>pir||S49229 H-protein - Flaveria bidentis >gi|547494|emb|CAA85754.1| (Z37517)
H-protein [Flaveria bidentis]
Length = 143
Score = 104 bits (256), Expect = 6e-22
Identities = 50/109 (45%), Positives = 71/109 (64%), Gaps = 2/109 (1%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E +GITD+AQ LG++ +V+LPE G V K VES
Sbjct: 36 VLDGLKYANSHEWVKH-EGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATSFGAVES 94
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEE 126
VKA S+V +P+SGE++EVN +L+++P IN+ PY W+ K+KP+N E
Sbjct: 95 VKATSDVNSPISGEIVEVNSKLTETPGLINKSPYEDGWMIKVKPSNPSE 143
>gb|AAG19869.1| (AE005071) glycine decarboxylase complex h-protein; GdcH
[Halobacterium sp. NRC-1]
Length = 124
Score = 103 bits (254), Expect = 1e-21
Identities = 52/122 (42%), Positives = 83/122 (67%), Gaps = 6/122 (4%)
Query: 17 YKVKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEV 76
+ V + L Y + HEW ++ T VGI+++AQ ELGD+ +VELP VG + + + L V
Sbjct: 3 FDVPDDLQYLESHEW---IDPATGRVGISEFAQDELGDVVFVELPSVGDALDQHDELGVV 59
Query: 77 ESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNNLEEELKELMDAE 135
ES+KAVS++YAPVSGEV VN+ L++ PE +NE P+G W+ +I ++ ++L+ +D++
Sbjct: 60 ESIKAVSDLYAPVSGEVTAVNDALTNEPELVNEAPFGDGWLVEIDFDS--DDLEATLDSD 117
Query: 136 KY 137
Y
Sbjct: 118 DY 119
>pir||S77266 glycine cleavage system protein H - Synechocystis sp. (strain PCC
6803) >gi|1652680|dbj|BAA17600.1| (D90907) glycine
decarboxylase complex H-protein [Synechocystis sp.]
Length = 132
Score = 102 bits (253), Expect = 1e-21
Identities = 53/130 (40%), Positives = 83/130 (63%), Gaps = 3/130 (2%)
Query: 16 EYKVKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCE 75
E + + LYY HE+ + + T +G++ +A ELGDI +VELPE G +V+ + +
Sbjct: 2 ELEHPDDLYYLDSHEYVR-FDGETATIGLSAFAVDELGDIVFVELPEEGDKVEFEQSMGA 60
Query: 76 VESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYG--AWIAKIKPNNLEEELKELMD 133
VESVKA S++Y+PV+G VIE N L D PE +N+DPYG W+ K++ +++E+ + LM
Sbjct: 61 VESVKAASDLYSPVTGTVIEKNSALEDQPELLNQDPYGEEGWLIKVRLDDVEDAKEGLMA 120
Query: 134 AEKYAEFLKS 143
A Y L++
Sbjct: 121 AGDYRATLET 130
>emb|CAA94317.1| (Z70304) H protein [Flaveria brownii]
Length = 141
Score = 101 bits (248), Expect = 5e-21
Identities = 51/109 (46%), Positives = 69/109 (62%), Gaps = 2/109 (1%)
Query: 19 VKEGLYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVES 78
V +GL Y HEW + E VGITD+AQ LG++ +V+LPE G V K VES
Sbjct: 34 VLDGLKYANSHEWVKH-EGSVATVGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVES 92
Query: 79 VKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEE 126
VKA S+V +P+SGE++EVN +LS++P IN PY W+ K+K +N E
Sbjct: 93 VKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKLSNPSE 141
>sp|P11183|GCSH_CHICK GLYCINE CLEAVAGE SYSTEM H PROTEIN PRECURSOR >gi|1070636|pir||GCCHH
glycine cleavage system protein H precursor - chicken
>gi|211900|gb|AAA48812.1| (M64401) hydrogen carrier
protein [Gallus gallus] >gi|222830|dbj|BAA14314.1|
(D90270) H-protein [Gallus gallus]
Length = 164
Score = 99.5 bits (244), Expect = 2e-20
Identities = 49/121 (40%), Positives = 79/121 (64%), Gaps = 3/121 (2%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
+T +HEW V E+G VGI+++AQ+ LGD+ Y LPE+G ++ K + +ESVKA SE
Sbjct: 44 FTDKHEWISV-ENGIGTVGISNFAQEALGDVVYCSLPEIGTKLNKDDEFGALESVKAASE 102
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPY-GAWIAKIKPNNLEEELKELMDAEKYAEFLKS 143
+Y+P++GEV ++N L+D+P +N+ Y W+ K+ EL ELM + Y +++KS
Sbjct: 103 LYSPLTGEVTDINAALADNPGLVNKSCYQDGWLIKMTVEK-PAELDELMSEDAYEKYIKS 161
Query: 144 L 144
+
Sbjct: 162 I 162
>pir||E70381 glycine cleavage system protein H - Aquifex aeolicus
>gi|2983473|gb|AAC07053.1| (AE000715) glycine cleavage
system protein H [Aquifex aeolicus]
Length = 161
Score = 99.1 bits (243), Expect = 2e-20
Identities = 55/129 (42%), Positives = 79/129 (60%), Gaps = 5/129 (3%)
Query: 19 VKEGLYYTKEHE-WAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVE 77
+ + LYY E++ W +V EDGTV +G+TD Q G + ++ + VG +VKKG+ + +E
Sbjct: 19 IPKDLYYDIENQVWVRVNEDGTVTLGLTDVGQTRAGRLLHIRVKPVGTKVKKGKPVATLE 78
Query: 78 SVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNN---LEEELKELMD 133
S K V A V GE++EVN ++ + P IN DPYG AWI KIKP + L+ +L EL
Sbjct: 79 SGKWAGPVPALVEGEIVEVNPKVVEDPNYINIDPYGDAWIVKIKPTSEETLKRDLSELAH 138
Query: 134 AEKYAEFLK 142
EK E +K
Sbjct: 139 GEKAHEEMK 147
>pir||E83339 glycine cleavage system protein H2 PA2446 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948494|gb|AAG05834.1|AE004672_2 (AE004672) glycine
cleavage system protein H2 [Pseudomonas aeruginosa]
Length = 127
Score = 99.1 bits (243), Expect = 2e-20
Identities = 50/122 (40%), Positives = 76/122 (61%), Gaps = 3/122 (2%)
Query: 23 LYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAV 82
L +T +HEW + +DG + VGIT YAQ LGD+ +V+LPE+G+ EV +ESVKA
Sbjct: 4 LRFTTDHEWLRQDDDGLLTVGITAYAQDALGDVVFVQLPELGEHAAGSEV-AVLESVKAA 62
Query: 83 SEVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNNLEEELKELMDAEKYAEFL 141
S + P+ GEV+ +N+ L D+PE +N+DP G AW + +P + ++L+D Y L
Sbjct: 63 SNILMPLDGEVVAINDALPDAPELVNQDPLGEAWFFRFRPAD-AGAWEKLLDQAAYDRLL 121
Query: 142 KS 143
+
Sbjct: 122 NA 123
>gb|AAF51697.2| (AE003594) ppl gene product [Drosophila melanogaster]
Length = 177
Score = 97.1 bits (238), Expect = 8e-20
Identities = 44/93 (47%), Positives = 63/93 (67%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
YT +HEW +V+ +VGI+ YAQ+ LGD+ + +LPE G E+K+ + +ESVKA SE
Sbjct: 43 YTNKHEWVEVVSGSNAIVGISSYAQEALGDVVFAQLPEPGTELKQDDECGALESVKAASE 102
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPYGAWIA 117
VY+PVSG+VIE N E+ D+P +N Y +A
Sbjct: 103 VYSPVSGKVIEKNAEVEDTPALVNSSCYEKGLA 135
>gb|AAK41324.1| Glycine cleavage system protein H [Sulfolobus solfataricus]
Length = 148
Score = 96.3 bits (236), Expect = 1e-19
Identities = 57/138 (41%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 11 MIEVGEYKVKEGLYYTKEHE---WAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEV 67
M+ ++ E LYY E + WA++ T++VGITD AQ G I V + + G +V
Sbjct: 1 MVVESNCEIPENLYYFIEGKNTVWAKLESPDTIVVGITDLAQTMAGKIVKVRIKKKGTKV 60
Query: 68 KKGEVLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNNLEE 126
+KG + +ES K V APV+GEV+EVN E SP IN+DPYG W+ K+K +N E
Sbjct: 61 EKGRPVATMESGKWAGPVPAPVTGEVVEVNAEAEKSPIIINQDPYGKGWLVKMKMSN-PE 119
Query: 127 ELKELMDAEKYAEFLKSL 144
ELK+L + + LK L
Sbjct: 120 ELKQLFSGQAAIQKLKEL 137
>gb|AAF69757.1|AC018749_9 (AC018749) Glycine decarboxylase H-protein [Leishmania major]
Length = 107
Score = 95.6 bits (234), Expect = 2e-19
Identities = 49/104 (47%), Positives = 67/104 (64%), Gaps = 4/104 (3%)
Query: 40 VLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSEVYAPVSGEVIEVNEE 99
+ +GI+ YAQ+ LGD+ YV LP+VG VK+ +V+ EVESVKA S VY+PV G V VNE
Sbjct: 7 ITIGISSYAQENLGDVVYVSLPQVGDTVKEKDVIGEVESVKATSNVYSPVDGTVSAVNEN 66
Query: 100 LSDSPEKINEDP-YGAWIAKIKPNNLEEELKELMDAEKYAEFLK 142
L D P +N+ P W+ K+K + + K LMD Y +FL+
Sbjct: 67 LKDEPGLVNQSPEEKGWLIKVKCSEIP---KGLMDEAAYKKFLE 107
>pir||D70336 hypothetical protein aq_402 - Aquifex aeolicus
>gi|2983075|gb|AAC06682.1| (AE000688) putative protein
[Aquifex aeolicus]
Length = 148
Score = 93.2 bits (228), Expect = 1e-18
Identities = 57/140 (40%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Query: 11 MIEVGEYKVKEG-LYYTKEHE----WAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGK 65
M EV ++ E LYY + WA+ EDG +G+T A G + +VGK
Sbjct: 1 MAEVNGCQLPEDRLYYINPDKNAFIWAKE-EDGVFTIGLTSVAAAMAGRLVAYTPKKVGK 59
Query: 66 EVKKGEVLCEVESVKAVSEVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNNL 124
VKK + + +ES K V V +P GE++EVNE L +P +N+DPYG WIAK+KP N
Sbjct: 60 AVKKDKSVATIESGKWVGPVPSPFDGEIVEVNEALKGNPALVNDDPYGQGWIAKVKPANP 119
Query: 125 EEELKELMDAEKYAEFLKSL 144
EE L+DA K AE L+ +
Sbjct: 120 EEAKSVLVDANKAAELLQPI 139
>pir||C72079 glycine cleavage system H protein CP0320 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
>gi|4376715|gb|AAD18577.1| (AE001626) Glycine Cleavage
System H Protein [Chlamydophila pneumoniae CWL029]
>gi|7189248|gb|AAF38175.1| (AE002194) glycine cleavage
system H protein [Chlamydophila pneumoniae AR39]
>gi|8978805|dbj|BAA98641.1| (AP002546) glycine cleavage
system H protein [Chlamydophila pneumoniae J138]
Length = 115
Score = 93.2 bits (228), Expect = 1e-18
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 12/120 (10%)
Query: 23 LYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAV 82
++Y+ H W + + V +G+T+ QK LG I +V+LP VG K+GEVL +ES K+
Sbjct: 1 MWYSDYHVWILPVHERVVRLGLTEKMQKNLGAILHVDLPSVGSLCKEGEVLVILESSKSA 60
Query: 83 SEVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIK------PNNLEEELKELMDAE 135
EV +PVSGEVI++N +L D+P+KINE P G W+A ++ P+NL LMD E
Sbjct: 61 IEVLSPVSGEVIDINLDLVDNPQKINEAPEGEGWLAVVRLDQDWDPSNL-----SLMDEE 115
>gb|AAK41362.1| Glycine cleavage system protein H, hypothetical [Sulfolobus
solfataricus]
Length = 140
Score = 80.8 bits (196), Expect = 6e-15
Identities = 37/103 (35%), Positives = 60/103 (57%)
Query: 23 LYYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAV 82
LY ++H W ++ ++ V +G+TD Q G I V + G++V VL +ES K +
Sbjct: 13 LYEPEKHVWVRIEDNSVVSIGVTDLGQYMAGKIFQVTAKQKGEKVNGRSVLFSIESAKWI 72
Query: 83 SEVYAPVSGEVIEVNEELSDSPEKINEDPYGAWIAKIKPNNLE 125
+ P+ GEV +VNEE+ +P INE PY +WI KI+ +++
Sbjct: 73 GKFRLPIEGEVFDVNEEVVKNPSIINERPYDSWIVKIRVEDMD 115
>pir||F81690 glycine cleavage system H protein TC0554 [imported] - Chlamydia
muridarum (strain Nigg) >gi|7190594|gb|AAF39393.1|
(AE002323) glycine cleavage system H protein [Chlamydia
muridarum]
Length = 117
Score = 80.4 bits (195), Expect = 8e-15
Identities = 42/116 (36%), Positives = 64/116 (54%), Gaps = 8/116 (6%)
Query: 24 YYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVS 83
YY+ H W + + V +G++ Q+ LG+I +++LP +G +K+GE LC +ES K+
Sbjct: 6 YYSDYHVWIEPIHSQIVRLGLSSRMQEHLGNILHIDLPSLGASIKEGEELCVLESSKSAI 65
Query: 84 EVYAPVSGEVIEVNEELSDSPEKINEDPYG-AWIAKIKPNNLEEELKELMDAEKYA 138
EV +PVSGEVIEVN L D IN W + +L E D E+++
Sbjct: 66 EVLSPVSGEVIEVNIALEDDTHPINHSAESEGWFVVL-------QLSEDFDGERFS 114
>pir||G71535 probable glycine cleavage system H protein - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328695|gb|AAC67875.1|
(AE001300) Glycine Cleavage System H Protein [Chlamydia
trachomatis]
Length = 117
Score = 74.5 bits (180), Expect = 5e-13
Identities = 34/85 (40%), Positives = 54/85 (63%)
Query: 24 YYTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVS 83
YY+ H W + + V +G++ ++ LG+I +++LP +G +K+GE LC +ES K+
Sbjct: 6 YYSDYHVWIEPIHSRIVKLGLSSQMREHLGNILHIDLPSLGAFIKEGEKLCILESSKSAI 65
Query: 84 EVYAPVSGEVIEVNEELSDSPEKIN 108
EV +PVSGEV+EVN L D +N
Sbjct: 66 EVLSPVSGEVLEVNTALEDDILPVN 90
>pir||D70390 glycine cleavage system protein H - Aquifex aeolicus
>gi|2983538|gb|AAC07113.1| (AE000720) glycine cleavage
system protein H [Aquifex aeolicus]
Length = 143
Score = 71.4 bits (172), Expect = 4e-12
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 25 YTKEHEWAQVLEDGTVLVGITDYAQKELGDIAYVELPEVGKEVKKGEVLCEVESVKAVSE 84
Y +W + +G VG+ + +++ VG +++ E L +E+ K V+
Sbjct: 12 YRMLFQWVKDEGNGIYSVGMASILAALAYPLYSIKIKPVGTKLEYDEALAIIEAGKRVAT 71
Query: 85 VYAPVSGEVIEVNEELSDSPEKINEDPYGAWIAKIKPNNLEEELKELMDAEKYAEFLK 142
P+SG V++VNEE+ +PE IN+ PY +WIAK+K NL EE+K L A++ + +K
Sbjct: 72 FPTPLSGIVVDVNEEVIKNPELINKKPYSSWIAKLKATNL-EEVKNLQSAKEIVKTVK 128
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.308 0.132 0.361
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55822334
Number of Sequences: 2977
Number of extensions: 2283972
Number of successful extensions: 10332
Number of sequences better than 1.0e-10: 70
Number of HSP's better than 0.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10218
Number of HSP's gapped (non-prelim): 70
length of query: 144
length of database: 189,106,746
effective HSP length: 59
effective length of query: 85
effective length of database: 153,796,013
effective search space: 13072661105
effective search space used: 13072661105
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.6 bits)
S2: 161 (67.1 bits)