BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0560 (PAB0560) DE:Hypothetical protein
(216 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75128 hypothetical protein PAB0560 - Pyrococcus abyssi (st... 445 e-124
pir||F71002 hypothetical protein PH1316 - Pyrococcus horikoshii ... 408 e-113
gi|11498832 conserved hypothetical protein [Archaeoglobus fulgid... 104 9e-22
pir||F70423 DNA polymerase beta family - Aquifex aeolicus >gi|29... 85 5e-16
pir||G69172 DNA-dependent DNA polymerase family X - Methanobacte... 81 1e-14
sp|Q44408|YOR4_ANATH HYPOTHETICAL 27.7 KD PROTEIN IN XYNA-ALFA I... 80 2e-14
pir||C69985 probable DNA-dependent DNA polymerase beta chain ysh... 77 1e-13
dbj|BAB06826.1| (AP001517) DNA-dependent DNA polymerase beta cha... 77 2e-13
pir||C75515 conserved hypothetical protein - Deinococcus radiodu... 72 6e-12
pir||E70655 hypothetical protein Rv3856c - Mycobacterium tubercu... 70 2e-11
emb|CAC14354.1| (AL445945) conserved hypothetical protein [Strep... 68 9e-11
>pir||G75128 hypothetical protein PAB0560 - Pyrococcus abyssi (strain Orsay)
>gi|5458255|emb|CAB49744.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 216
Score = 445 bits (1133), Expect = e-124
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MMDLHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDHIHYFTPSKFSAYINEIRIAKEES 60
MMDLHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDHIHYFTPSKFSAYINEIRIAKEES
Sbjct: 1 MMDLHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDHIHYFTPSKFSAYINEIRIAKEES 60
Query: 61 DIVVLAGIEANILENGPDITDEFRKRLDYVIASVHEWFGRDGAHMYIEYVKRAIMDDNVD 120
DIVVLAGIEANILENGPDITDEFRKRLDYVIASVHEWFGRDGAHMYIEYVKRAIMDDNVD
Sbjct: 61 DIVVLAGIEANILENGPDITDEFRKRLDYVIASVHEWFGRDGAHMYIEYVKRAIMDDNVD 120
Query: 121 IIGHFGNSFPWIGYPTEEEIREVLELAEAYGKAFEISSRYKVPDLEFIKECIRRGIKLSL 180
IIGHFGNSFPWIGYPTEEEIREVLELAEAYGKAFEISSRYKVPDLEFIKECIRRGIKLSL
Sbjct: 121 IIGHFGNSFPWIGYPTEEEIREVLELAEAYGKAFEISSRYKVPDLEFIKECIRRGIKLSL 180
Query: 181 ATDAHRPEDVGKISWSLKMFEKAGGSKEDLVFSEYL 216
ATDAHRPEDVGKISWSLKMFEKAGGSKEDLVFSEYL
Sbjct: 181 ATDAHRPEDVGKISWSLKMFEKAGGSKEDLVFSEYL 216
>pir||F71002 hypothetical protein PH1316 - Pyrococcus horikoshii
>gi|3257739|dbj|BAA30422.1| (AP000006) 216aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 216
Score = 408 bits (1038), Expect = e-113
Identities = 188/216 (87%), Positives = 207/216 (95%)
Query: 1 MMDLHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDHIHYFTPSKFSAYINEIRIAKEES 60
MMDLHTHT+YSDGIG++RDNVAWAEKRGLKIVGISDHIH+FTPS+FSAYINEI + KEES
Sbjct: 1 MMDLHTHTVYSDGIGLIRDNVAWAEKRGLKIVGISDHIHFFTPSRFSAYINEINVIKEES 60
Query: 61 DIVVLAGIEANILENGPDITDEFRKRLDYVIASVHEWFGRDGAHMYIEYVKRAIMDDNVD 120
+IVVLAGIEANILENGPDITDEFRK+LDY IASVHEWFGR+G H YI YVK+AIMDDNVD
Sbjct: 61 EIVVLAGIEANILENGPDITDEFRKKLDYAIASVHEWFGRNGTHEYINYVKKAIMDDNVD 120
Query: 121 IIGHFGNSFPWIGYPTEEEIREVLELAEAYGKAFEISSRYKVPDLEFIKECIRRGIKLSL 180
IIGHFGNSFPWIGYPT EEI E+L+LAEAYGKAFEIS+RYKVPDLEFI+EC++RGIKLSL
Sbjct: 121 IIGHFGNSFPWIGYPTREEIDEILDLAEAYGKAFEISARYKVPDLEFIRECVKRGIKLSL 180
Query: 181 ATDAHRPEDVGKISWSLKMFEKAGGSKEDLVFSEYL 216
ATDAHRPEDVGK+SWSLKM EKAGG+KEDL+FSEYL
Sbjct: 181 ATDAHRPEDVGKVSWSLKMLEKAGGTKEDLIFSEYL 216
>gi|11498832 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483103|pir||H69403 conserved hypothetical protein
AF1233 - Archaeoglobus fulgidus
>gi|2649349|gb|AAB90011.1| (AE001019) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 211
Score = 104 bits (257), Expect = 9e-22
Identities = 73/204 (35%), Positives = 113/204 (54%), Gaps = 13/204 (6%)
Query: 1 MMDLHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDHIHY--FTPSKFSAYINEIRIAKE 58
M+DLH H+ YSDG G V + A++RGLK + I DH F ++ A + EI I
Sbjct: 1 MIDLHIHSNYSDGQGSVEEIARRAKERGLKAIAIVDHSIELPFGLTEKKARMREIEIENA 60
Query: 59 ES--DIVVLAGIEANILENGPDITDEFRKRLDYVIASVHEW-FGRDGAHMYIEYVKRAIM 115
S I + +GIE +I G + +F D++IASVHE+ +G+ Y E V R +
Sbjct: 61 ASLYGIKIYSGIECSINAAGEIVLPDFD--FDFIIASVHEFVYGQ----AYYERVIRCLE 114
Query: 116 DDNVDIIGH-FGNSFPWIGYPTEEEIREVLELAEAYGKAFEISSRYKVPDLEFIKECIRR 174
+VD++GH F F + G E + ++L++ E G A E++S +K P EF++ C R
Sbjct: 115 SHDVDVLGHPFSPLFGFDGRLAEMD-EKLLDVVEERGVAVELNSSHKSPQDEFLQLCRDR 173
Query: 175 GIKLSLATDAHRPEDVGKISWSLK 198
I S+ +DAH VG++ WS++
Sbjct: 174 KIAYSIGSDAHSLSGVGEVGWSVE 197
>pir||F70423 DNA polymerase beta family - Aquifex aeolicus
>gi|2983818|gb|AAC07374.1| (AE000739) DNA polymerase
beta family [Aquifex aeolicus]
Length = 581
Score = 85.4 bits (208), Expect = 5e-16
Identities = 60/195 (30%), Positives = 103/195 (52%), Gaps = 18/195 (9%)
Query: 3 DLHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDH------IHYFTPSKFSAYINEI-RI 55
DLH HT +SDG+ + + V A K G + + I DH + P ++ EI R+
Sbjct: 345 DLHMHTNWSDGVNTLEEMVETAYKLGYQYIVIGDHSQSARVANGLDPERYKQQWKEIDRL 404
Query: 56 AKE--ESDIVVLAGIEANILENGP-DITDEFRKRLDYVIASVHEWFGRDGAHMYIEYVKR 112
KE +L G E +IL +G D+ DE ++ D+V+ASVH F +D E + +
Sbjct: 405 NKEYNPKGFYILKGAEVDILPDGSLDLPDEVLEQFDFVVASVHSRFEQDNT----ERIIK 460
Query: 113 AIMDDNVDIIGH-FGNSFPW-IGYPTEEEIREVLELAEAYGKAFEISSRYKVPDLEFIKE 170
A+ + V++IGH G + + GYP I ++++ A+ G A E++++ E +++
Sbjct: 461 AMENPYVNMIGHPTGKQYGYREGYPV--NIEKLIQKAKETGTALELNTQRMDLSPENVRK 518
Query: 171 CIRRGIKLSLATDAH 185
C+ G+ + + TDAH
Sbjct: 519 CMEAGVYIGIVTDAH 533
>pir||G69172 DNA-dependent DNA polymerase family X - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621626|gb|AAB85056.1| (AE000838) DNA-dependent DNA
polymerase family X [Methanobacterium
thermoautotrophicum]
Length = 550
Score = 80.8 bits (196), Expect = 1e-14
Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 25/203 (12%)
Query: 3 DLHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDHIHYFTPSKFSAYINEIRIAKEESDI 62
DLH H+++SDGI + +A G + + I+DH Y AY R A+ +I
Sbjct: 337 DLHMHSLFSDGIDSMEQMAEYASVLGREYIAITDHARYIDDP--DAY---FRAAERIEEI 391
Query: 63 VVLAGIEANILENGP-DITDEFRKRLDYVIASVHEWFGRDGAHMYIEYVKRAIMDDNVDI 121
VLAG+E +IL +G ++ D K D VIAS+H+ E + A+ D V I
Sbjct: 392 DVLAGVEVSILHDGNLEVPDGALKNFDLVIASIHD------PGNLTERLLAAMDHDPVSI 445
Query: 122 IGH-----FGNSFPWIGYPTEEEIREVLELAEAYGKAFEISSRYKVPDLE--FIKECIRR 174
IGH G+ P + +I V+E A G A E++S DL +K +
Sbjct: 446 IGHPTGRVLGSPEPVV------DIERVIEGAAEAGVALEVNSNPLRIDLRDTHVKMAVDM 499
Query: 175 GIKLSLATDAHRPEDVGKISWSL 197
G K+++ +DAH + ISW +
Sbjct: 500 GCKIAINSDAHSRGALENISWGV 522
>sp|Q44408|YOR4_ANATH HYPOTHETICAL 27.7 KD PROTEIN IN XYNA-ALFA INTERGENIC REGION (ORF4)
>gi|1208897|emb|CAA93629.1| (Z69782) hypothetical
protein [Anaerocellum thermophilum]
Length = 246
Score = 80.4 bits (195), Expect = 2e-14
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 18/210 (8%)
Query: 2 MDLHTHTIYSD-GIGMVRDNVAWAEKRGLKIVGISDHIHYFTPSKFSAYI-NEIRIAKEE 59
++ H HTI S + + V A+K+GLK + I+DH S S Y N I + ++
Sbjct: 11 VETHCHTIASGHAYNNLEEMVLEAQKKGLKGICITDHGPEMPGSCSSLYFYNLIVVPRKI 70
Query: 60 SDIVVLAGIEANIL--ENGPDITDEFRKRLDYVIASVHEWFGRDGAHM-YIEYVKRAIMD 116
+ I+V G EANI+ E DI ++ KRLD+VIAS+H+ G + + AI +
Sbjct: 71 NGIMVFRGCEANIVDYEGRIDIPEDALKRLDFVIASLHDVCIPSGTVSDHTRALIGAIKN 130
Query: 117 DNVDIIGHFGNSFPWIGYPTEEEIREVLELAEAYGKAFEISS-------RYKVPDLEFIK 169
+ IGH GN Y ++E EV+ A+ Y KA EI++ + K +E +K
Sbjct: 131 PYIHCIGHPGNPL----YEIDKE--EVVLAAKEYKKAIEINNSSFYVREKSKENCIEILK 184
Query: 170 ECIRRGIKLSLATDAHRPEDVGKISWSLKM 199
C + G+ +++ +DAH D+G+ + K+
Sbjct: 185 LCKKYGVYIAMGSDAHYKADIGRCEITQKL 214
>pir||C69985 probable DNA-dependent DNA polymerase beta chain yshC - Bacillus
subtilis >gi|1770035|emb|CAA99568.1| (Z75208)
hypothetical protein [Bacillus subtilis]
>gi|2635324|emb|CAB14819.1| (Z99118) similar to DNA
polymerase beta [Bacillus subtilis]
Length = 570
Score = 77.3 bits (187), Expect = 1e-13
Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 11/196 (5%)
Query: 3 DLHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDHIHY------FTPSKFSAYINEI-RI 55
DLH H+ +SDG +R+ K+G + + I+DH Y T + EI +
Sbjct: 337 DLHMHSTWSDGAFSIREMAEACIKKGYQYMAITDHSQYLKVANGLTAERLKQQAKEIDAL 396
Query: 56 AKEESDIVVLAGIEANILENGP-DITDEFRKRLDYVIASVHEWFGRDGAHMYIEYVKRAI 114
E + +L G+E +IL +G D D+ +D VIAS+H F + H+ ++ ++ A+
Sbjct: 397 NAEFENFRILKGVEMDILPDGTLDYDDDVLAEMDIVIASIHSSFNQP-EHVIMKRLETAL 455
Query: 115 MDDNVDIIGHFGNSFPWIGYPTEEEIREVLELAEAYGKAFEISSRYKVPDL--EFIKECI 172
+ +VDII H E +I +++ELA A E+++ DL E + +
Sbjct: 456 TNKHVDIIAHPTGRLIGRRAGYEIDIDQLIELARKTNTALELNANPARLDLRTEHLMKAN 515
Query: 173 RRGIKLSLATDAHRPE 188
+G+ L + TDAH E
Sbjct: 516 EQGVTLVINTDAHNIE 531
>dbj|BAB06826.1| (AP001517) DNA-dependent DNA polymerase beta chain [Bacillus
halodurans]
Length = 571
Score = 76.9 bits (186), Expect = 2e-13
Identities = 54/210 (25%), Positives = 101/210 (47%), Gaps = 11/210 (5%)
Query: 3 DLHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDHIHY------FTPSKFSAYINEIRIA 56
DLH HT +SDG + + A +RG + + I+DH + + + +IR
Sbjct: 337 DLHMHTTWSDGAHSIEEMAEAARQRGYEYIAITDHSKFLRVANGLSEERLKEQHAKIREL 396
Query: 57 KEE-SDIVVLAGIEANILENGP-DITDEFRKRLDYVIASVHEWFGRDGAHMYIEYVKRAI 114
E D + GIE +IL +G D D +D+VIAS+H F + ++ +K A+
Sbjct: 397 NERYDDFTIFTGIEMDILPDGTLDYEDPILAEVDFVIASIHSSFSQP-REKIMDRLKTAL 455
Query: 115 MDDNVDIIGHFGNSFPWIGYPTEEEIREVLELAEAYGKAFEISSRYKVPDL--EFIKECI 172
++ +VD+I H + ++ ++ELA+ A E+++ DL E +K+
Sbjct: 456 VNHHVDLIAHPTGRLIGRREGYDVDVDMLIELAKETNTALELNANPNRLDLNSEALKKAQ 515
Query: 173 RRGIKLSLATDAHRPEDVGKISWSLKMFEK 202
+G+ +++ TD+H E + + + + K
Sbjct: 516 EQGVVMAINTDSHTKETFSYMEYGVGVARK 545
>pir||C75515 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458154|gb|AAF10047.1|AE001906_3 (AE001906)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 572
Score = 71.8 bits (173), Expect = 6e-12
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 12/210 (5%)
Query: 4 LHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDH------IHYFTPSKFSAYINEIRIAK 57
+HTH+ +SDG +R+ G + +G +DH + T + + EIR
Sbjct: 331 IHTHSTWSDGGASIREMAEATLTLGHEFLGTADHSRAAYYANGLTIERLREQLKEIR-EL 389
Query: 58 EESDIVVLAGIEANILENGP-DITDEFRKRLDYVIASVHEWFGRDGAHMYIEYVKRAIMD 116
+ + + ++AG E +IL++G D D+ LDYV+ SVH F D A E + RA+
Sbjct: 390 QRAGLPIVAGSEVDILDDGSLDFPDDVLGELDYVVVSVHSNFTLDAARQ-TERLIRAVSH 448
Query: 117 DNVDIIGHFGNSFPWIGYPTEEEIREVLELAEAYGKAFEISSRYKVPDLEFIKECI--RR 174
V ++GH ++ VL EA G EI++ DL++ +E + R
Sbjct: 449 PLVTVLGHATGRLLLRRPGYALDLDAVLGACEANGTVVEINANAARLDLDW-REALRWRE 507
Query: 175 GIKLSLATDAHRPEDVGKISWSLKMFEKAG 204
+K ++ TDAH P + + + KAG
Sbjct: 508 RLKFAINTDAHVPGGLRDARYGVMQARKAG 537
>pir||E70655 hypothetical protein Rv3856c - Mycobacterium tuberculosis (strain
H37RV) >gi|1781100|emb|CAB06234.1| (Z83864) hypothetical
protein Rv3856c [Mycobacterium tuberculosis]
Length = 335
Score = 70.2 bits (169), Expect = 2e-11
Identities = 61/201 (30%), Positives = 93/201 (45%), Gaps = 19/201 (9%)
Query: 3 DLHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDHIHYFT------PSKFSAYINEIRIA 56
DLH H+ +SDG + + +A A G + ++DH T P + ++ I
Sbjct: 99 DLHLHSNWSDGSAPIEEMMATAAALGHQYCALTDHSPRLTIANGLSPDRLRKQLDVIDEL 158
Query: 57 KEE-SDIVVLAGIEANILENGP-DITDEFRKRLDYVIASVHEWFGRDGAHMYIEYVKRAI 114
+E+ + + +L GIE +ILE+G D E RLD V+ASVH D A M V RA+
Sbjct: 159 REKFAPLRILTGIEVDILEDGSLDQEPEMLDRLDIVVASVHSKLSMDSAAMTRRMV-RAV 217
Query: 115 MDDNVDIIGH------FGNSFPWIGYPTEEEIREVLELAEAYGKAFEISSR--YKVPDLE 166
+ + D++GH GN I ++ + V +G A EI+SR + P
Sbjct: 218 ANGHTDVLGHCTGRLIAGNR--GIRPESKFDAEAVFTACREHGTAVEINSRPERRDPPTR 275
Query: 167 FIKECIRRGIKLSLATDAHRP 187
+ G S+ TDAH P
Sbjct: 276 LLHLARDIGCVFSIDTDAHAP 296
>emb|CAC14354.1| (AL445945) conserved hypothetical protein [Streptomyces coelicolor]
Length = 372
Score = 67.9 bits (163), Expect = 9e-11
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 24/211 (11%)
Query: 3 DLHTHTIYSDGIGMVRDNVAWAEKRGLKIVGISDHIHYFTPSKFSAYINEIRIAKEESDI 62
D H H+ +SDG + + A G + ++DH T ++ ++ R+ +E+ D+
Sbjct: 129 DCHLHSDWSDGGSPIEEMGRTAAALGHEWAALTDHSPRLTVARG---LSPARL-REQLDV 184
Query: 63 V-----------VLAGIEANILENGP-DITDEFRKRLDYVIASVHEWFGRDGAHMYIEYV 110
V +L GIE +IL++G D E +RLD V+ SVH D M V
Sbjct: 185 VAELNATWAPFRLLTGIECDILDDGSLDQEPELLERLDVVVVSVHSKLRMDARSMTRRMV 244
Query: 111 KRAIMDDNVDIIGHF-GNSFPWIGYPTEE-EIREVLELAEAYGKAFEISSRYKV--PDLE 166
A+ D + D++GH G G P + EV G A EI+SR + P
Sbjct: 245 A-AVRDPHADVLGHCTGRLLTGRGRPESAFDADEVFAACAEAGTAVEINSRPERLDPPRR 303
Query: 167 FIKECIRRGIKLSLATDAHRPEDVGKISWSL 197
++ + G+ S+ TDAH P G++ W +
Sbjct: 304 LLRRAVAAGVLFSIDTDAHAP---GQLDWQI 331
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.417
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85043185
Number of Sequences: 2977
Number of extensions: 3499878
Number of successful extensions: 7876
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7855
Number of HSP's gapped (non-prelim): 11
length of query: 216
length of database: 189,106,746
effective HSP length: 52
effective length of query: 164
effective length of database: 157,985,422
effective search space: 25909609208
effective search space used: 25909609208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)