BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0561 (thiI-like) DE:THIAMIN BIOSYNTHESIS PROTEIN THII
related
(306 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75129 thiamin biosynthesis protein thII related PAB0561 - ... 606 e-172
pir||C71002 hypothetical protein PH1313 - Pyrococcus horikoshii ... 463 e-129
pir||T44564 probable thiamin biosynthesis protein thiI [imported... 146 3e-34
sp|Q58341|THII_METJA PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 140 2e-32
gi|11498485 conserved hypothetical protein [Archaeoglobus fulgid... 122 7e-27
sp|O27720|THII_METTH PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 121 9e-27
dbj|BAB06922.1| (AP001518) thiamin biosynthesis [Bacillus halodu... 104 1e-21
sp|Q9YEW8|THII_AERPE PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 101 9e-21
sp|Q9X220|THII_THEMA PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 98 1e-19
sp|O34595|THII_BACSU PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 98 2e-19
gb|AAG19645.1| (AE005052) Vng1299c [Halobacterium sp. NRC-1] 96 4e-19
gb|AAK40666.1| Thiamine biosynthesis protein thiI (thiI) [Sulfol... 96 5e-19
pir||C82892 thiamin biosynthesis protein UU418 [imported] - Urea... 80 3e-14
>pir||B75129 thiamin biosynthesis protein thII related PAB0561 - Pyrococcus
abyssi (strain Orsay) >gi|5458258|emb|CAB49747.1|
(AJ248285) THIAMIN BIOSYNTHESIS PROTEIN THII related
[Pyrococcus abyssi]
Length = 306
Score = 606 bits (1545), Expect = e-172
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MNSVVVRYGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTNKARE 60
MNSVVVRYGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTNKARE
Sbjct: 1 MNSVVVRYGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTNKARE 60
Query: 61 ASNALVRVFGIVSLSPAMEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEF 120
ASNALVRVFGIVSLSPAMEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEF
Sbjct: 61 ASNALVRVFGIVSLSPAMEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEF 120
Query: 121 PLNSLEIQAKVGEFILNNEDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQG 180
PLNSLEIQAKVGEFILNNEDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQG
Sbjct: 121 PLNSLEIQAKVGEFILNNEDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQG 180
Query: 181 KMVGLLQDELSALAIFLMMKRGVEVIPVHVGDNVEVARELWGILRKYSYGSKGRLVVVEN 240
KMVGLLQDELSALAIFLMMKRGVEVIPVHVGDNVEVARELWGILRKYSYGSKGRLVVVEN
Sbjct: 181 KMVGLLQDELSALAIFLMMKRGVEVIPVHVGDNVEVARELWGILRKYSYGSKGRLVVVEN 240
Query: 241 IERVNKLISEFGAKGVVKGLRPENLEGELPEIEEDKRMFKVPVYYPLIALPDEYLEEVKE 300
IERVNKLISEFGAKGVVKGLRPENLEGELPEIEEDKRMFKVPVYYPLIALPDEYLEEVKE
Sbjct: 241 IERVNKLISEFGAKGVVKGLRPENLEGELPEIEEDKRMFKVPVYYPLIALPDEYLEEVKE 300
Query: 301 KLFNRN 306
KLFNRN
Sbjct: 301 KLFNRN 306
>pir||C71002 hypothetical protein PH1313 - Pyrococcus horikoshii
>gi|3257736|dbj|BAA30419.1| (AP000006) 307aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 307
Score = 463 bits (1179), Expect = e-129
Identities = 222/305 (72%), Positives = 269/305 (87%), Gaps = 3/305 (0%)
Query: 1 MNSVVVRYGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTNKARE 60
MN V+VRYGEIGTKSRQTR+WFE+IL+NNIREAL+ E + YKEIF++HGRIIV+TN +E
Sbjct: 1 MNVVIVRYGEIGTKSRQTRSWFEKILMNNIREALVTEEVPYKEIFSRHGRIIVKTNSPKE 60
Query: 61 ASNALVRVFGIVSLSPAMEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEF 120
A+N LVRVFGIVS+SPAMEVEASLEKIN+TAL +FR+K +E+G +RP+FRVTARRITKEF
Sbjct: 61 AANVLVRVFGIVSISPAMEVEASLEKINRTALLMFRKKAKEVGKERPKFRVTARRITKEF 120
Query: 121 PLNSLEIQAKVGEFILNNEDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQG 180
PL+SLEIQAKVGE+ILNNE+C VDL YD+E+GIEIM+GKAYI+TEKIKGWGGLPIGT+G
Sbjct: 121 PLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQGKAYIYTEKIKGWGGLPIGTEG 180
Query: 181 KMVGLLQDELSALAIFLMMKRGVEVIPVHVG---DNVEVARELWGILRKYSYGSKGRLVV 237
+M+G+L DELSALAIFLMMKRGVEVIPV++G N+E R LW +L++YSYGSKG LVV
Sbjct: 181 RMIGILHDELSALAIFLMMKRGVEVIPVYIGKDDKNLEKVRSLWNLLKRYSYGSKGFLVV 240
Query: 238 VENIERVNKLISEFGAKGVVKGLRPENLEGELPEIEEDKRMFKVPVYYPLIALPDEYLEE 297
E+ +RV KLI +FG KGV+KGLRP +L E+ EI ED +MF VPVYYPLIALP+EY++
Sbjct: 241 AESFDRVLKLIRDFGVKGVIKGLRPNDLNSEVSEITEDFKMFPVPVYYPLIALPEEYIKS 300
Query: 298 VKEKL 302
VKE+L
Sbjct: 301 VKERL 305
>pir||T44564 probable thiamin biosynthesis protein thiI [imported] - Pyrococcus
furiosus >gi|6066237|gb|AAF03222.1|AF156097_2 (AF156097)
putative thiamine biosynthesis protein THII [Pyrococcus
furiosus]
Length = 363
Score = 146 bits (365), Expect = 3e-34
Identities = 108/333 (32%), Positives = 168/333 (50%), Gaps = 48/333 (14%)
Query: 4 VVVRYGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTNKAREASN 63
++VRYGEI K R R FE+ L +NI + L +GI K ++ GRI+V + EA+N
Sbjct: 2 IIVRYGEIAIK-RGKRKEFEKKLADNIEKILKRKGIPGKTKISR-GRILV--DAPNEATN 57
Query: 64 ALVRVFGIVSLSPA--MEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEFP 121
+ + G+VS+SPA ME E + KT + G + F+V +R+ K F
Sbjct: 58 IIAKTPGVVSVSPAEVMEYEEIPNYLKKTLM----------GFNPKSFKVETQRLDKTFL 107
Query: 122 LNSLEIQAKVGEFILNNEDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQGK 181
SLEI ++GEF++ VDL ++ +GIEI++GKAY+F EKIKG GGLP+GTQGK
Sbjct: 108 KTSLEINKEIGEFVVKEFGWKVDLENPELVIGIEIIDGKAYVFFEKIKGVGGLPVGTQGK 167
Query: 182 MVGLLQDEL-SALAIFLMMKRGVEVIPVHVGDNVEVARELWGILRKYS-YGSKGRLVVVE 239
+V L+ + S +A FLM+KRG EVI +H + + ++ S Y + ++VE
Sbjct: 168 VVALISGGIDSPVAAFLMLKRGAEVIALHFDQGTNAKKVVEKVVEILSDYSPEPIELIVE 227
Query: 240 N-----------------------------IERVNKLISEFGAKGVVKGLRPENLEGE-L 269
N ++R ++ E GA G+V G + + L
Sbjct: 228 NHFEILKPYVSVLAKLQKREWTCILCKIAMLKRAAEIAKEEGALGIVTGDSLGQVASQTL 287
Query: 270 PEIEEDKRMFKVPVYYPLIALPDEYLEEVKEKL 302
+ + P+Y PLI E + + +++
Sbjct: 288 SNLFIETISVDYPIYRPLIGFDKEEIVSIAKRI 320
>sp|Q58341|THII_METJA PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|2128072|pir||C64416
conserved hypothetical MG372 related protein -
Methanococcus jannaschii >gi|1591602|gb|AAB98933.1|
(U67536) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 381
Score = 140 bits (349), Expect = 2e-32
Identities = 91/266 (34%), Positives = 147/266 (55%), Gaps = 12/266 (4%)
Query: 4 VVVRYGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTN---KARE 60
++VRYGEIG KS R E IL NI + L I+ E+ H +++V+ N K
Sbjct: 11 ILVRYGEIGLKSDPIRKNLEEILRKNIIKLLRKYEID-AEVKILHRKLLVKINTKDKEDL 69
Query: 61 ASNALVRVFGIVSLSPAMEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEF 120
A L +V GIVS SP E + +I A+ + ++K++ L ++ F V +R K+F
Sbjct: 70 ALKLLKKVAGIVSYSPVYECPLDINEIVSFAVQIMKKKLKTLNKEKVTFAVKTKRSYKKF 129
Query: 121 PLNSLEIQAKVGEFILNNEDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQG 180
P S+E+ KVGE I+ VDL D+ +GIEI+ AYIFTEK +G GGLP G+QG
Sbjct: 130 PFTSVEVNKKVGEAIVEKLGLEVDLENPDIVLGIEILNDGAYIFTEKYEGIGGLPAGSQG 189
Query: 181 KMVGLLQDEL-SALAIFLMMKRGVEVIPVHVGDNVEVARELWGILRKYS-YGSKGRLVVV 238
K++ L+ D + S +A F+M++RG + +H+ + E ++ I+ S Y ++ VV
Sbjct: 190 KVLCLISDGIDSPVAAFMMIRRGCRAVLLHLKMSEEALNKVRKIVEVLSDYDTELEFVVY 249
Query: 239 ENIERVNKLISEFGAKGVVKGLRPEN 264
+ + + ++ + +K ++ EN
Sbjct: 250 DYKKDIEDIVEK------LKSIKKEN 269
>gi|11498485 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3915121|sp|O29382|THII_ARCFU PROBABLE THIAMINE
BIOSYNTHESIS PROTEIN THII >gi|7429877|pir||G69359
conserved hypothetical protein AF0879 - Archaeoglobus
fulgidus >gi|2649723|gb|AAB90361.1| (AE001043) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 374
Score = 122 bits (302), Expect = 7e-27
Identities = 80/206 (38%), Positives = 114/206 (54%), Gaps = 17/206 (8%)
Query: 5 VVRYGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTNKAREASNA 64
VV YGEIG K + R +FER LI I+ A G+ + K+GRI V + E+ A
Sbjct: 7 VVHYGEIGIKGKN-REFFERKLIEAIKRAT---GMRVRR---KYGRIEVEYREGLESRMA 59
Query: 65 LVRVFGIVSLSPAMEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEFPLNS 124
++ GI + E +LE I K AL++ + F+V R K FP+NS
Sbjct: 60 --KIPGIRYFGVGFKTELNLESIKKAALSVLPESFKT-------FKVDTSRSNKNFPMNS 110
Query: 125 LEIQAKVGEFILNNEDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQGKMVG 184
+E+ KVG FI+ VDL DV V IEI E +AY+++++ +G GGLP+G GK+V
Sbjct: 111 VEVNRKVGAFIVEKTGKKVDLTNPDVTVWIEICEKEAYVYSKRYEGIGGLPVGVAGKVVA 170
Query: 185 LLQDEL-SALAIFLMMKRGVEVIPVH 209
L+ + S +A F+ MKRG EV+ VH
Sbjct: 171 LISGGIDSPVAAFMAMKRGCEVVAVH 196
>sp|O27720|THII_METTH PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|7429876|pir||C69092
conserved hypothetical protein MTH1685 -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622815|gb|AAB86157.1| (AE000926) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 389
Score = 121 bits (301), Expect = 9e-27
Identities = 100/335 (29%), Positives = 155/335 (45%), Gaps = 45/335 (13%)
Query: 4 VVVRYGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTNKAREASN 63
++ RYGE+ K R FE L++NI+ A +HGRI + EA +
Sbjct: 8 ILARYGEVAIKGPSVRRRFEGKLLHNIKSAFSCRAE------LRHGRIFIFPEDMDEALD 61
Query: 64 ALVRVFGIVSLSPAMEVEASLEKINKTALTLFRRKVRELGL--DRPRFRVTARRITKEFP 121
L ++FGIVS SPA+ E + I + +L + ++R GL R F + RR+ E
Sbjct: 62 RLSKIFGIVSFSPAVTAETGFDSI-EDSLREYIHELRSEGLLTSRTPFAIRCRRVG-EHD 119
Query: 122 LNSLEIQAKVGEFILNNEDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQGK 181
S E+ A G ++ VDL D+E+ +EI E + YI+ I G GGLP GTQGK
Sbjct: 120 FTSQEMAAFAGSVVVGEIGAPVDLGNPDLEIHLEIREDETYIYHRVIPGPGGLPAGTQGK 179
Query: 182 MVGLLQDEL-SALAIFLMMKRGVEVIPVHVGDNV--------EVARELWGILRKYSYGSK 232
+V LL + S +A +LMMKRG +V+ VH+ DN E ++ L +YS G +
Sbjct: 180 VVALLSGGIDSPVATYLMMKRGCQVVAVHM-DNAPFTGEEAEEKVEKIAAKLAEYSAGVE 238
Query: 233 GRLVV------VENIER------------------VNKLISEFGAKGVVKGLRPENLEGE 268
+L +E+ R + E GA +V G + +
Sbjct: 239 FKLRTFSYGRYLESCRRGAPEKMTCVLCKFGMYHLAEMVAEEEGALAIVDGSSLGQVASQ 298
Query: 269 -LPEIEEDKRMFKVPVYYPLIALPDEYLEEVKEKL 302
LP I + +P+ PLI + +E + +++
Sbjct: 299 TLPNILATRMGVNIPILSPLIGMDKVEIENLAKRI 333
>dbj|BAB06922.1| (AP001518) thiamin biosynthesis [Bacillus halodurans]
Length = 382
Score = 104 bits (258), Expect = 1e-21
Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 13/194 (6%)
Query: 22 FERILINNIREALLDE--GIEYKEIFAKHGRIIVRTN--KAREASNALVRVFGIVSLSPA 77
FE+ L+ NIR L + Y F GRI++ N + L ++FGI S S A
Sbjct: 2 FEKQLVQNIRSVLKPSFPRLTYHRTF---GRILLGLNGEDPLPIKDKLRKIFGIHSFSLA 58
Query: 78 MEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEFPLNSLEIQAKVGEFIL- 136
+ V L+K+ + AL + E+ F++ ARR K FP++S E+ +G ++L
Sbjct: 59 IRVTNELDKMKQAALHALQASEGEV----KTFKINARRAYKPFPISSSELNHHLGGYVLA 114
Query: 137 NNEDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQGKMVGLLQDEL-SALAI 195
N E +VD+H DVE+ +E+ E YI T + KG GGLP+GT GK++ +L + S +A
Sbjct: 115 NTEQISVDVHSPDVEIKVEVRESGTYIMTGEFKGLGGLPVGTSGKVLLMLSGGIDSPVAG 174
Query: 196 FLMMKRGVEVIPVH 209
+ ++KRGV + +H
Sbjct: 175 YYLLKRGVTLEAIH 188
>sp|Q9YEW8|THII_AERPE PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|7445341|pir||H72741
probable thiazole biosynthesis gene thi I APE0465 -
Aeropyrum pernix (strain K1) >gi|5104112|dbj|BAA79428.1|
(AP000059) 412aa long hypothetical thiazole biosynthesis
gene thi I [Aeropyrum pernix]
Length = 412
Score = 101 bits (250), Expect = 9e-21
Identities = 83/250 (33%), Positives = 129/250 (51%), Gaps = 23/250 (9%)
Query: 2 NSVVVRYGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTNK---A 58
N V+VRY EI K TR+ ER+L+ + E+L G+E E+ GR++VR A
Sbjct: 20 NVVLVRYSEIAVKGGYTRSRMERLLLRALEESLAAAGVE-AEVERLQGRVLVRLRSPGDA 78
Query: 59 REASNALVRVFGIVSLSPAMEVEAS-LEKINKTALTLFRRKVRELGLDRPRFRVTARRIT 117
A+ A RVFG+ S+SPA+EVE S +E + + A F +VR FRV ARR
Sbjct: 79 AAAARASARVFGVKSVSPAVEVEYSGIEDLAEKAAEFFGERVR-----GRVFRVRARRSG 133
Query: 118 KEFPLNSLEIQAKVGEFILNNEDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIG 177
E S +++ +G+ +L VDL + + +E+ +AY F G GGLP+G
Sbjct: 134 VE-GFTSKDVERLLGKLLLERGAGGVDLEKPEYTAYVEVRGRRAYFFDTINPGPGGLPVG 192
Query: 178 TQGKMVGLLQDEL-SALAIFLMMKRGVEV--------IPVHVGDNVEVARELWGILRKYS 228
++ + L S +A +++M+RG V +P + VE A+ L G +++
Sbjct: 193 SEEPSLALYSGGFDSGVAAWMIMRRGSPVHLAFYDFGVPEALEVAVEGAKTLAG---EWA 249
Query: 229 YGSKGRLVVV 238
+G + RL VV
Sbjct: 250 WGYRPRLYVV 259
>sp|Q9X220|THII_THEMA PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|7445342|pir||H72223
thiamin biosynthesis protein ThiI - Thermotoga maritima
(strain MSB8) >gi|4982270|gb|AAD36761.1|AE001809_13
(AE001809) thiamin biosynthesis protein ThiI [Thermotoga
maritima]
Length = 388
Score = 98.3 bits (241), Expect = 1e-19
Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 18/243 (7%)
Query: 5 VVRYGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTNKAREASNA 64
+VRY EIG K + R FE L NI E + ++ + GR ++ ++ +
Sbjct: 8 IVRYSEIGLKGKN-RKDFEEALRRNI------ERVTGMKVKRQWGRFLIPIDENVTLDDK 60
Query: 65 LVRVFGIVSLSPAMEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEFPLNS 124
L ++FGI + S V E++ K +L + K+ E G R F+V A++ KE+
Sbjct: 61 LKKIFGIQNFSKGFLVSHDFEEVKKYSLIAVKEKL-EKGNYRT-FKVQAKKAYKEYKKGV 118
Query: 125 LEIQAKVGEFILNN-EDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQGKMV 183
EI +++G IL N ++ +VD+ D +G+E+ IFT++++ +GGLP+GT GK V
Sbjct: 119 YEINSELGALILKNFKELSVDVRNPDFVLGVEVRPEGVLIFTDRVECYGGLPVGTGGKAV 178
Query: 184 GLLQDEL-SALAIFLMMKRGVEV-------IPVHVGDNVEVARELWGILRKYSYGSKGRL 235
LL + S +A + +KRGV + P VE R++ +LR++S G RL
Sbjct: 179 LLLSGGIDSPVAGWYALKRGVLIESVTFVSPPFTSEGAVEKVRDILRVLREFSGGHPLRL 238
Query: 236 VVV 238
+V
Sbjct: 239 HIV 241
>sp|O34595|THII_BACSU PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|7429879|pir||E69988
conserved hypothetical protein ytbJ - Bacillus subtilis
>gi|2293230|gb|AAC00308.1| (AF008220) YtbJ [Bacillus
subtilis] >gi|2635442|emb|CAB14936.1| (Z99119) similar
to hypothetical proteins [Bacillus subtilis]
Length = 358
Score = 97.5 bits (239), Expect = 2e-19
Identities = 71/211 (33%), Positives = 115/211 (53%), Gaps = 13/211 (6%)
Query: 4 VVVRYGEIGTKSRQTRAWFERILINNIREALLD-EGIEYKEIFAKHGRIIVRTNKAREAS 62
+++R+GEI TK + +++ ER L NIR L D ++Y F+ R+ + N +
Sbjct: 6 ILIRFGEISTKGKNRKSFIER-LKQNIRLVLKDYPNLKY---FSNRDRMTITLNGEDPEA 61
Query: 63 --NALVRVFGIVSLSPAMEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEF 120
L +VFGI S S A++ ++ L+ I TAL + +++ F+V +R K+F
Sbjct: 62 LFPHLKQVFGIQSFSLAIKCDSRLDDIKATAL----KAIKDQYKPGDTFKVATKRAYKQF 117
Query: 121 PLNSLEIQAKVGEFILNN-EDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQ 179
L++ ++ A++G IL N E TVD+ D+ + IEI E ++ KG GGLP+G+
Sbjct: 118 ELDTNQMNAEIGGHILRNTEGLTVDVRNPDIPLRIEIREEATFLTIRDEKGAGGLPVGSA 177
Query: 180 GKMVGLLQDEL-SALAIFLMMKRGVEVIPVH 209
GK + +L S +A F MKRG+ V VH
Sbjct: 178 GKAMLMLSGGFDSPVAGFYAMKRGLSVEAVH 208
>gb|AAG19645.1| (AE005052) Vng1299c [Halobacterium sp. NRC-1]
Length = 392
Score = 96.3 bits (236), Expect = 4e-19
Identities = 66/213 (30%), Positives = 111/213 (51%), Gaps = 10/213 (4%)
Query: 2 NSVVVRYGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTNKAREA 61
+SVVVR+G++G KS ++ ER L +N+ L D G+ ++ + GR++VR+ A
Sbjct: 7 DSVVVRHGDVGVKSSHVQSDMERTLRDNVAAMLADRGVP-GDVEREWGRVLVRSPAPGRA 65
Query: 62 SNALVRVFGIVSLSPAMEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRI-TKEF 120
++A FG+VS SPA+ V L+ I+ R D F V ARR T +F
Sbjct: 66 ADAAADTFGVVSASPAVSVAPDLDAISDALAAAARAHY-----DGGAFAVDARRAGTHDF 120
Query: 121 PLNSLEIQAKVGEFILNNEDC--TVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGT 178
+ + + +D VDL + D+ +E+ + +A++F G GG+P+GT
Sbjct: 121 DSHDVNRVGGDAVWAAVEDDFQPVVDLDDPDITFFVEVRDAEAFVFLTHRDGPGGMPLGT 180
Query: 179 QGKMVGLLQDEL-SALAIFLMMKRGVEVIPVHV 210
Q +V L+ + S +A + M+RG VIP+++
Sbjct: 181 QQPLVALVSGGIDSPVAAWESMRRGAPVIPLYL 213
>gb|AAK40666.1| Thiamine biosynthesis protein thiI (thiI) [Sulfolobus solfataricus]
Length = 371
Score = 96.0 bits (235), Expect = 5e-19
Identities = 94/330 (28%), Positives = 151/330 (45%), Gaps = 43/330 (13%)
Query: 4 VVVR-YGEIGTKSRQTRAWFERILINNIREALLDEGIEYKEIFAKHGRIIVRTNKAREAS 62
V++R GEI KS ++R FE LINNIR I +I+ G I++ N
Sbjct: 3 VIIRPSGEIALKSPRSRRNFEYTLINNIRNT-----IGGGKIWRSQGVILLEVNDNNANI 57
Query: 63 NALVRVFGIVSLSPAMEVEAS-LEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEFP 121
AL VFGI S SP + ++++ LE I A +F V+ F V A+RI
Sbjct: 58 EALSEVFGISSFSPVIAIKSNNLEDIVNKAKEIFAEIVKG-----KIFAVRAKRIGSH-S 111
Query: 122 LNSLEIQAKVGEFILNNEDCTVDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQGK 181
SL+++ + GE + VDL +VE+ IEI Y + + IKG GLP+G GK
Sbjct: 112 FTSLDVERRAGEALYPYSK-GVDLENPEVEIFIEIRNEMTYFYHKVIKGPKGLPVGVAGK 170
Query: 182 MVGLLQDEL-SALAIFLMMKRGVEVIPVHVGDNVEVAREL----WGILRKYSYGSKGRLV 236
V L + S +A ++MMKRG I ++ ++ +EL +L+++S G K ++
Sbjct: 171 TVVLFSGGIDSPVATWMMMKRGSVPIILNFNLGGDLHKELVLKELNMLKRWSGGHKLKIF 230
Query: 237 VVE---------NIER--------------VNKLISEFGAKGVVKGLRPENLEGE-LPEI 272
+V+ +ER KL + AK + G + + + +
Sbjct: 231 IVKGTDVFIKLSQVERRSRVVMLKRVMYKTAEKLCEKTNAKSITTGESLSQVSSQTMANL 290
Query: 273 EEDKRMFKVPVYYPLIALPDEYLEEVKEKL 302
+ K P++ PLI E + ++ K+
Sbjct: 291 YVTEYGIKYPIFRPLIGFDKEEIVDIARKI 320
>pir||C82892 thiamin biosynthesis protein UU418 [imported] - Ureaplasma
urealyticum >gi|6899407|gb|AAF30829.1|AE002139_2
(AE002139) thiamin biosynthesis protein [Ureaplasma
urealyticum]
Length = 390
Score = 80.0 bits (194), Expect = 3e-14
Identities = 59/205 (28%), Positives = 103/205 (49%), Gaps = 11/205 (5%)
Query: 4 VVVRYGEIGTKSRQTRAWFERILINNIREALLD-EGIEYKEIFAKHGRIIVRTNKAREAS 62
+ ++YGE+ K + R F ++L++NI++ L+ + + Y + I + ++
Sbjct: 5 IYIKYGELTLKGKN-RTQFIKVLVHNIKQILIQYQNLTYCVGYDNLKIINLENYNLKQII 63
Query: 63 NALVRVFGIVSLSPAMEVEASLEKINKTALTLFRRKVRELGLDRPRFRVTARRITKEFPL 122
+ L V+GI + A +V+ L +I + A F + F++ ARR K F
Sbjct: 64 DDLKEVYGIAFICIAYQVDKELSEI-QLACKEFINDYEQT------FKIEARRSDKSFKY 116
Query: 123 NSLEIQAKVGEFILNNEDCT-VDLHEYDVEVGIEIMEGKAYIFTEKIKGWGGLPIGTQGK 181
NS+EI+ ++L N VD+H + + IEI A ++ KI G GLP+G GK
Sbjct: 117 NSMEIKQMCAAYLLQNSPLLKVDVHRPQLLINIEIKYDCAIVYGHKIMGAKGLPVGINGK 176
Query: 182 MVGLLQDEL-SALAIFLMMKRGVEV 205
+ LL + S +A L+MKRG+ +
Sbjct: 177 ALVLLSGGIDSPVASRLIMKRGISI 201
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103327660
Number of Sequences: 2977
Number of extensions: 4117557
Number of successful extensions: 10557
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10522
Number of HSP's gapped (non-prelim): 13
length of query: 306
length of database: 189,106,746
effective HSP length: 56
effective length of query: 250
effective length of database: 155,591,474
effective search space: 38897868500
effective search space used: 38897868500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)