BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0563 (PAB0563) DE:type II secretion system protein, putative
         (193 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75129 probable type II secretion system protein PAB0563 - ...   381  e-105
pir||F71001 hypothetical protein PH1309 - Pyrococcus horikoshii ...   306  1e-82

>pir||G75129 probable type II secretion system protein PAB0563 - Pyrococcus
           abyssi (strain Orsay) >gi|5458263|emb|CAB49752.1|
           (AJ248285) type II secretion system protein, putative
           [Pyrococcus abyssi]
           Length = 193
           
 Score =  381 bits (968), Expect = e-105
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 1   MGVYIFKPEDLLRYGTITEEQLELLKDAIEKKADILIVGGTRAGKTKLVEALVFLIPDDW 60
           MGVYIFKPEDLLRYGTITEEQLELLKDAIEKKADILIVGGTRAGKTKLVEALVFLIPDDW
Sbjct: 1   MGVYIFKPEDLLRYGTITEEQLELLKDAIEKKADILIVGGTRAGKTKLVEALVFLIPDDW 60

Query: 61  KVAVVTAYNEFKPFKENIQVINTEFDGRSLDKRTEEVIDAIQRINPDYVIIDTIHTVKVS 120
           KVAVVTAYNEFKPFKENIQVINTEFDGRSLDKRTEEVIDAIQRINPDYVIIDTIHTVKVS
Sbjct: 61  KVAVVTAYNEFKPFKENIQVINTEFDGRSLDKRTEEVIDAIQRINPDYVIIDTIHTVKVS 120

Query: 121 EMLRRLIDKHGFIVTSLVLSRNLSDEIKHWLKIDDELLSKFELVIELYRDIKTGLRKVNA 180
           EMLRRLIDKHGFIVTSLVLSRNLSDEIKHWLKIDDELLSKFELVIELYRDIKTGLRKVNA
Sbjct: 121 EMLRRLIDKHGFIVTSLVLSRNLSDEIKHWLKIDDELLSKFELVIELYRDIKTGLRKVNA 180

Query: 181 IYRIKGGRLEKIS 193
           IYRIKGGRLEKIS
Sbjct: 181 IYRIKGGRLEKIS 193


>pir||F71001 hypothetical protein PH1309 - Pyrococcus horikoshii
           >gi|3257731|dbj|BAA30414.1| (AP000006) 193aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 193
           
 Score =  306 bits (776), Expect = 1e-82
 Identities = 146/193 (75%), Positives = 177/193 (91%)

Query: 1   MGVYIFKPEDLLRYGTITEEQLELLKDAIEKKADILIVGGTRAGKTKLVEALVFLIPDDW 60
           MGVYIF PEDLLRYGT+T+EQL++L+ AI +K DI+IVGGTR GKTKL+EAL FLIP++W
Sbjct: 1   MGVYIFTPEDLLRYGTVTKEQLDILRKAIMEKKDIVIVGGTRTGKTKLIEALTFLIPENW 60

Query: 61  KVAVVTAYNEFKPFKENIQVINTEFDGRSLDKRTEEVIDAIQRINPDYVIIDTIHTVKVS 120
           ++AV+TAYNEFKPFKENI+VINTEFD RSL +RTE+VI  I RI+PDYVIIDT+HTV V+
Sbjct: 61  RIAVITAYNEFKPFKENIRVINTEFDERSLGQRTEDVISEISRIDPDYVIIDTLHTVDVA 120

Query: 121 EMLRRLIDKHGFIVTSLVLSRNLSDEIKHWLKIDDELLSKFELVIELYRDIKTGLRKVNA 180
           ++LRRLID++GFIVTSL LSRN+ +EIKHWL+ID+++LSKFEL+IELYRDIKTGLRKVNA
Sbjct: 121 KILRRLIDRYGFIVTSLSLSRNVLEEIKHWLRIDEDVLSKFELIIELYRDIKTGLRKVNA 180

Query: 181 IYRIKGGRLEKIS 193
           IY IK G+LEKIS
Sbjct: 181 IYEIKEGKLEKIS 193


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.142    0.394 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65864427
Number of Sequences: 2977
Number of extensions: 2498044
Number of successful extensions: 10421
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10419
Number of HSP's gapped (non-prelim): 2
length of query: 193
length of database: 189,106,746
effective HSP length: 55
effective length of query: 138
effective length of database: 156,189,961
effective search space: 21554214618
effective search space used: 21554214618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)