BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0564 (PAB0564) DE:Hypothetical protein
(216 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75130 hypothetical protein PAB0564 - Pyrococcus abyssi (st... 425 e-118
pir||D71001 hypothetical protein PH1307 - Pyrococcus horikoshii ... 281 5e-75
sp|Q58608|YC11_METJA HYPOTHETICAL PROTEIN MJ1211 >gi|2128727|pir... 73 2e-12
pir||B70352 hypothetical protein aq_578 - Aquifex aeolicus >gi|2... 69 4e-11
>pir||A75130 hypothetical protein PAB0564 - Pyrococcus abyssi (strain Orsay)
>gi|5458265|emb|CAB49754.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 216
Score = 425 bits (1081), Expect = e-118
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MIGEMIREDIETLNRELAKYGIRVEKFLAKGTTSFVFLGSYANRPVIVKFQRSDSPRRNL 60
MIGEMIREDIETLNRELAKYGIRVEKFLAKGTTSFVFLGSYANRPVIVKFQRSDSPRRNL
Sbjct: 1 MIGEMIREDIETLNRELAKYGIRVEKFLAKGTTSFVFLGSYANRPVIVKFQRSDSPRRNL 60
Query: 61 KKEAEILKMLEGENITGELVLYDEIKGREVLVREFIEGELLINSDIERKHVISIAEKTYR 120
KKEAEILKMLEGENITGELVLYDEIKGREVLVREFIEGELLINSDIERKHVISIAEKTYR
Sbjct: 61 KKEAEILKMLEGENITGELVLYDEIKGREVLVREFIEGELLINSDIERKHVISIAEKTYR 120
Query: 121 LDRLGIDHGQIQGGKHIIVAPTDVWLIDFEKASMNRKPRNLTSAMAMLFLGENRIAERIT 180
LDRLGIDHGQIQGGKHIIVAPTDVWLIDFEKASMNRKPRNLTSAMAMLFLGENRIAERIT
Sbjct: 121 LDRLGIDHGQIQGGKHIIVAPTDVWLIDFEKASMNRKPRNLTSAMAMLFLGENRIAERIT 180
Query: 181 KKFNVNKKFREELLVALREYKKSGNPKRIFDVLSTL 216
KKFNVNKKFREELLVALREYKKSGNPKRIFDVLSTL
Sbjct: 181 KKFNVNKKFREELLVALREYKKSGNPKRIFDVLSTL 216
>pir||D71001 hypothetical protein PH1307 - Pyrococcus horikoshii
>gi|3257729|dbj|BAA30412.1| (AP000006) 219aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 219
Score = 281 bits (711), Expect = 5e-75
Identities = 134/213 (62%), Positives = 175/213 (81%), Gaps = 1/213 (0%)
Query: 5 MIREDIETLNRELAKYGIRVEKFLAKGTTSFVFLGSYANRPVIVKFQRSDSPRRNLKKEA 64
+I + IE LN+EL KY I+V+KFLAKGTTSFVFLG + VI+K+QR DSPRRNL+KEA
Sbjct: 7 VINKSIEVLNKELGKYRIKVKKFLAKGTTSFVFLGEFGGSDVIIKYQRPDSPRRNLEKEA 66
Query: 65 EILKMLEGENITGELVLYDEIKGREVLVREFIEG-ELLINSDIERKHVISIAEKTYRLDR 123
+IL++L+G ITGEL+LY +I REVLVRE++ G L+ +IER H+ IAEKTY+LD
Sbjct: 67 KILEILKGSGITGELILYGKIDDREVLVREYLNGLHLMEVENIERHHLFRIAEKTYKLDT 126
Query: 124 LGIDHGQIQGGKHIIVAPTDVWLIDFEKASMNRKPRNLTSAMAMLFLGENRIAERITKKF 183
LGIDHGQIQGGKHI+V D+WLIDFEKASMNRKPRNLTSAM+MLFLG N ++ RI++KF
Sbjct: 127 LGIDHGQIQGGKHILVGKDDIWLIDFEKASMNRKPRNLTSAMSMLFLGNNIVSRRISEKF 186
Query: 184 NVNKKFREELLVALREYKKSGNPKRIFDVLSTL 216
N+ + FREE+ AL+ YK++G+P+ +F++++TL
Sbjct: 187 NITESFREEMRKALKYYKRNGDPREVFELIATL 219
>sp|Q58608|YC11_METJA HYPOTHETICAL PROTEIN MJ1211 >gi|2128727|pir||B64451 hypothetical
protein MJ1211 - Methanococcus jannaschii
>gi|1591840|gb|AAB99222.1| (U67562) M. jannaschii
predicted coding region MJ1211 [Methanococcus
jannaschii]
Length = 116
Score = 73.4 bits (177), Expect = 2e-12
Identities = 43/115 (37%), Positives = 67/115 (57%), Gaps = 7/115 (6%)
Query: 94 EFIEGELL------INSDIERKHVISIAEKTYRLDRLGIDHGQIQGGKHIIVAPTDVWLI 147
EFI+GE L ++ D K V I + T +LD LGI+H +IQGG+H ++ ++I
Sbjct: 2 EFIDGEELKSAVDKLDKDRLLKVVEDILKITLKLDILGIEHKEIQGGRHFLITNKKTYII 61
Query: 148 DFEKASMNRKPRNLTSAMAMLFLGENRIAERITKKFNVNKKFREELLVALREYKK 202
DF+KA + +N T A+A+LF GE RIA+ I + N+ + + ++YKK
Sbjct: 62 DFDKAKEKKTTKNFTGAIALLF-GEGRIAKTIRENLNIGIDEIKFIREFAKKYKK 115
>pir||B70352 hypothetical protein aq_578 - Aquifex aeolicus
>gi|2983207|gb|AAC06806.1| (AE000696) putative protein
[Aquifex aeolicus]
Length = 192
Score = 69.1 bits (166), Expect = 4e-11
Identities = 49/185 (26%), Positives = 96/185 (51%), Gaps = 21/185 (11%)
Query: 28 LAKGTTSFVFLGSYANRPVIVKFQRSDSPRRNLKKEAEILKMLEGENITGELVLYDEIKG 87
LA+G V+ G + + V +K ++ + ++KEAEIL+ L+G +++ KG
Sbjct: 16 LAEGWRGKVYTGYWRGKKVAIKVAKAPDKVKAIQKEAEILEKLKGLKGFPQIL----FKG 71
Query: 88 REVLVREFIE----GELLINSDIERKHVISIAEKTYRLDRLGIDHGQIQG-GKHIIVAPT 142
+ V EFIE G+L I + +++ + + EK Y LDR+GI+ + K+++V
Sbjct: 72 EDFFVYEFIEGKPFGKLKIGEEEKKRLLKEVLEKAYLLDRMGINRDEFSNIYKNVLVGDK 131
Query: 143 -DVWLIDFEKASMNRKPRNLTSAMAML----FLGENRIAERITKKFNVNKKFREELLVAL 197
+V++IDF++ + + P N+ + +L FL + E + K+++E +
Sbjct: 132 GEVFVIDFDRGTFKKNPSNVRQFLQLLKREGFLSQEEAIE-------LGKRYKENPEEVI 184
Query: 198 REYKK 202
+E +K
Sbjct: 185 KEIRK 189
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71364395
Number of Sequences: 2977
Number of extensions: 2753753
Number of successful extensions: 7754
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7747
Number of HSP's gapped (non-prelim): 4
length of query: 216
length of database: 189,106,746
effective HSP length: 57
effective length of query: 159
effective length of database: 154,992,987
effective search space: 24643884933
effective search space used: 24643884933
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)