BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0564 (PAB0564) DE:Hypothetical protein
         (216 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75130 hypothetical protein PAB0564 - Pyrococcus abyssi (st...   425  e-118
pir||D71001 hypothetical protein PH1307 - Pyrococcus horikoshii ...   281  5e-75
sp|Q58608|YC11_METJA HYPOTHETICAL PROTEIN MJ1211 >gi|2128727|pir...    73  2e-12
pir||B70352 hypothetical protein aq_578 - Aquifex aeolicus >gi|2...    69  4e-11

>pir||A75130 hypothetical protein PAB0564 - Pyrococcus abyssi (strain Orsay)
           >gi|5458265|emb|CAB49754.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 216
           
 Score =  425 bits (1081), Expect = e-118
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MIGEMIREDIETLNRELAKYGIRVEKFLAKGTTSFVFLGSYANRPVIVKFQRSDSPRRNL 60
           MIGEMIREDIETLNRELAKYGIRVEKFLAKGTTSFVFLGSYANRPVIVKFQRSDSPRRNL
Sbjct: 1   MIGEMIREDIETLNRELAKYGIRVEKFLAKGTTSFVFLGSYANRPVIVKFQRSDSPRRNL 60

Query: 61  KKEAEILKMLEGENITGELVLYDEIKGREVLVREFIEGELLINSDIERKHVISIAEKTYR 120
           KKEAEILKMLEGENITGELVLYDEIKGREVLVREFIEGELLINSDIERKHVISIAEKTYR
Sbjct: 61  KKEAEILKMLEGENITGELVLYDEIKGREVLVREFIEGELLINSDIERKHVISIAEKTYR 120

Query: 121 LDRLGIDHGQIQGGKHIIVAPTDVWLIDFEKASMNRKPRNLTSAMAMLFLGENRIAERIT 180
           LDRLGIDHGQIQGGKHIIVAPTDVWLIDFEKASMNRKPRNLTSAMAMLFLGENRIAERIT
Sbjct: 121 LDRLGIDHGQIQGGKHIIVAPTDVWLIDFEKASMNRKPRNLTSAMAMLFLGENRIAERIT 180

Query: 181 KKFNVNKKFREELLVALREYKKSGNPKRIFDVLSTL 216
           KKFNVNKKFREELLVALREYKKSGNPKRIFDVLSTL
Sbjct: 181 KKFNVNKKFREELLVALREYKKSGNPKRIFDVLSTL 216


>pir||D71001 hypothetical protein PH1307 - Pyrococcus horikoshii
           >gi|3257729|dbj|BAA30412.1| (AP000006) 219aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 219
           
 Score =  281 bits (711), Expect = 5e-75
 Identities = 134/213 (62%), Positives = 175/213 (81%), Gaps = 1/213 (0%)

Query: 5   MIREDIETLNRELAKYGIRVEKFLAKGTTSFVFLGSYANRPVIVKFQRSDSPRRNLKKEA 64
           +I + IE LN+EL KY I+V+KFLAKGTTSFVFLG +    VI+K+QR DSPRRNL+KEA
Sbjct: 7   VINKSIEVLNKELGKYRIKVKKFLAKGTTSFVFLGEFGGSDVIIKYQRPDSPRRNLEKEA 66

Query: 65  EILKMLEGENITGELVLYDEIKGREVLVREFIEG-ELLINSDIERKHVISIAEKTYRLDR 123
           +IL++L+G  ITGEL+LY +I  REVLVRE++ G  L+   +IER H+  IAEKTY+LD 
Sbjct: 67  KILEILKGSGITGELILYGKIDDREVLVREYLNGLHLMEVENIERHHLFRIAEKTYKLDT 126

Query: 124 LGIDHGQIQGGKHIIVAPTDVWLIDFEKASMNRKPRNLTSAMAMLFLGENRIAERITKKF 183
           LGIDHGQIQGGKHI+V   D+WLIDFEKASMNRKPRNLTSAM+MLFLG N ++ RI++KF
Sbjct: 127 LGIDHGQIQGGKHILVGKDDIWLIDFEKASMNRKPRNLTSAMSMLFLGNNIVSRRISEKF 186

Query: 184 NVNKKFREELLVALREYKKSGNPKRIFDVLSTL 216
           N+ + FREE+  AL+ YK++G+P+ +F++++TL
Sbjct: 187 NITESFREEMRKALKYYKRNGDPREVFELIATL 219


>sp|Q58608|YC11_METJA HYPOTHETICAL PROTEIN MJ1211 >gi|2128727|pir||B64451 hypothetical
           protein MJ1211 - Methanococcus jannaschii
           >gi|1591840|gb|AAB99222.1| (U67562) M. jannaschii
           predicted coding region MJ1211 [Methanococcus
           jannaschii]
           Length = 116
           
 Score = 73.4 bits (177), Expect = 2e-12
 Identities = 43/115 (37%), Positives = 67/115 (57%), Gaps = 7/115 (6%)

Query: 94  EFIEGELL------INSDIERKHVISIAEKTYRLDRLGIDHGQIQGGKHIIVAPTDVWLI 147
           EFI+GE L      ++ D   K V  I + T +LD LGI+H +IQGG+H ++     ++I
Sbjct: 2   EFIDGEELKSAVDKLDKDRLLKVVEDILKITLKLDILGIEHKEIQGGRHFLITNKKTYII 61

Query: 148 DFEKASMNRKPRNLTSAMAMLFLGENRIAERITKKFNVNKKFREELLVALREYKK 202
           DF+KA   +  +N T A+A+LF GE RIA+ I +  N+     + +    ++YKK
Sbjct: 62  DFDKAKEKKTTKNFTGAIALLF-GEGRIAKTIRENLNIGIDEIKFIREFAKKYKK 115


>pir||B70352 hypothetical protein aq_578 - Aquifex aeolicus
           >gi|2983207|gb|AAC06806.1| (AE000696) putative protein
           [Aquifex aeolicus]
           Length = 192
           
 Score = 69.1 bits (166), Expect = 4e-11
 Identities = 49/185 (26%), Positives = 96/185 (51%), Gaps = 21/185 (11%)

Query: 28  LAKGTTSFVFLGSYANRPVIVKFQRSDSPRRNLKKEAEILKMLEGENITGELVLYDEIKG 87
           LA+G    V+ G +  + V +K  ++    + ++KEAEIL+ L+G     +++     KG
Sbjct: 16  LAEGWRGKVYTGYWRGKKVAIKVAKAPDKVKAIQKEAEILEKLKGLKGFPQIL----FKG 71

Query: 88  REVLVREFIE----GELLINSDIERKHVISIAEKTYRLDRLGIDHGQIQG-GKHIIVAPT 142
            +  V EFIE    G+L I  + +++ +  + EK Y LDR+GI+  +     K+++V   
Sbjct: 72  EDFFVYEFIEGKPFGKLKIGEEEKKRLLKEVLEKAYLLDRMGINRDEFSNIYKNVLVGDK 131

Query: 143 -DVWLIDFEKASMNRKPRNLTSAMAML----FLGENRIAERITKKFNVNKKFREELLVAL 197
            +V++IDF++ +  + P N+   + +L    FL +    E       + K+++E     +
Sbjct: 132 GEVFVIDFDRGTFKKNPSNVRQFLQLLKREGFLSQEEAIE-------LGKRYKENPEEVI 184

Query: 198 REYKK 202
           +E +K
Sbjct: 185 KEIRK 189


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.382 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71364395
Number of Sequences: 2977
Number of extensions: 2753753
Number of successful extensions: 7754
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7747
Number of HSP's gapped (non-prelim): 4
length of query: 216
length of database: 189,106,746
effective HSP length: 57
effective length of query: 159
effective length of database: 154,992,987
effective search space: 24643884933
effective search space used: 24643884933
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)