BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0569 (PAB0569) DE:Hypothetical protein
(267 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75131 hypothetical protein PAB0569 - Pyrococcus abyssi (st... 538 e-152
pir||A71087 hypothetical protein PH0958 - Pyrococcus horikoshii ... 521 e-147
gi|11498136 conserved hypothetical protein [Archaeoglobus fulgid... 204 1e-51
sp|Q58607|YC10_METJA HYPOTHETICAL PROTEIN MJ1210 >gi|2128726|pir... 169 4e-41
gb|AAG19068.1| (AE005006) Vng0546c [Halobacterium sp. NRC-1] 158 6e-38
emb|CAC12326.1| (AL445066) conserved hypothetical protein [Therm... 158 7e-38
pir||E69040 probable 3-isopropylmalate dehydratase - Methanobact... 154 1e-36
pir||A75200 hypothetical protein PAB0075 - Pyrococcus abyssi (st... 91 1e-17
gi|11498850 conserved hypothetical protein [Archaeoglobus fulgid... 89 7e-17
pir||D71233 probable 3-isopropylmalate dehydratase - Pyrococcus ... 87 2e-16
emb|CAC12561.1| (AL445067) conserved hypothetical protein [Therm... 71 1e-11
>pir||A75131 hypothetical protein PAB0569 - Pyrococcus abyssi (strain Orsay)
>gi|5458273|emb|CAB49762.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 267
Score = 538 bits (1370), Expect = e-152
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MKETIIVVHERPEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLI 60
MKETIIVVHERPEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLI
Sbjct: 1 MKETIIVVHERPEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLI 60
Query: 61 RKGSIVELMKNEFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTR 120
RKGSIVELMKNEFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTR
Sbjct: 61 RKGSIVELMKNEFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTR 120
Query: 121 EIITMGGYQVPELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLL 180
EIITMGGYQVPELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLL
Sbjct: 121 EIITMGGYQVPELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLL 180
Query: 181 LGIGKLRGMFGISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILR 240
LGIGKLRGMFGISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILR
Sbjct: 181 LGIGKLRGMFGISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILR 240
Query: 241 KVEEMQRAMMEQQLPRPTHEEEDRGYL 267
KVEEMQRAMMEQQLPRPTHEEEDRGYL
Sbjct: 241 KVEEMQRAMMEQQLPRPTHEEEDRGYL 267
>pir||A71087 hypothetical protein PH0958 - Pyrococcus horikoshii
>gi|3257372|dbj|BAA30055.1| (AP000004) 267aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 267
Score = 521 bits (1328), Expect = e-147
Identities = 255/267 (95%), Positives = 262/267 (97%)
Query: 1 MKETIIVVHERPEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLI 60
MKETIIVVHERP+IYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLI
Sbjct: 1 MKETIIVVHERPDIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLI 60
Query: 61 RKGSIVELMKNEFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTR 120
RKGSIVELMKNEFYYWKSPDDEHRDLII+TGDTQVPPTDSYGHFEV GKMLDFVQEFGTR
Sbjct: 61 RKGSIVELMKNEFYYWKSPDDEHRDLIIVTGDTQVPPTDSYGHFEVAGKMLDFVQEFGTR 120
Query: 121 EIITMGGYQVPELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLL 180
EIITMGGYQVPELQGEPRVLAAVTHPDL+ YY+EKLKDC VNV+WREDEGGAIVGAAGLL
Sbjct: 121 EIITMGGYQVPELQGEPRVLAAVTHPDLISYYQEKLKDCKVNVMWREDEGGAIVGAAGLL 180
Query: 181 LGIGKLRGMFGISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILR 240
LGIGKLRGMFGISLLGESLGYIVDAKAAKAVL+AVAKIL LEIDMTALEERAKETEEILR
Sbjct: 181 LGIGKLRGMFGISLLGESLGYIVDAKAAKAVLTAVAKILGLEIDMTALEERAKETEEILR 240
Query: 241 KVEEMQRAMMEQQLPRPTHEEEDRGYL 267
KVEEMQR +MEQQLPRPTHEEEDRGYL
Sbjct: 241 KVEEMQRTIMEQQLPRPTHEEEDRGYL 267
>gi|11498136 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429655|pir||E69315 probable 3-isopropylmalate
dehydratase - Archaeoglobus fulgidus
>gi|2650098|gb|AAB90711.1| (AE001068) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 259
Score = 204 bits (513), Expect = 1e-51
Identities = 111/244 (45%), Positives = 157/244 (63%), Gaps = 10/244 (4%)
Query: 10 ERPEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLIRKGSIVELM 69
E + +PVFIEGLPGIG VGKL A+HL+ ELKA+K E+YS +F QV++ + + +
Sbjct: 14 EEVGLENPVFIEGLPGIGHVGKLVADHLVNELKAEKVVEIYSHYFPPQVMVLEDGTIRMP 73
Query: 70 KNEFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTREIITMGGYQ 129
KNE Y WKS D DL+I+ GD Q + GHFE+V +D ++F R I T+GGY
Sbjct: 74 KNEVYAWKS-DGNGTDLLILVGDFQ--SISNEGHFELVNAYIDVAKKFSARMIYTLGGYG 130
Query: 130 VPELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDE-GGAIVGAAGLLLGIGKLRG 188
V +L EP V+ A P++VE K S V + E GG I+GA+GLLLG+ +L G
Sbjct: 131 VGKLVEEPYVIGAANSPEIVEELK------SYGVKFEPGEPGGGIIGASGLLLGVSELEG 184
Query: 189 MFGISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILRKVEEMQRA 248
+ L+G + GY+VD K+AK VL + K+L+LE+ + ALEERAKE E+I+ +++EMQ
Sbjct: 185 IPAACLMGVTSGYMVDPKSAKVVLDVLCKMLSLEVSVEALEERAKEMEKIIAQIKEMQEM 244
Query: 249 MMEQ 252
++Q
Sbjct: 245 AVQQ 248
>sp|Q58607|YC10_METJA HYPOTHETICAL PROTEIN MJ1210 >gi|2128726|pir||A64451 probable
3-isopropylmalate dehydratase - Methanococcus jannaschii
>gi|1591839|gb|AAB99213.1| (U67562) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 258
Score = 169 bits (423), Expect = 4e-41
Identities = 96/247 (38%), Positives = 147/247 (58%), Gaps = 13/247 (5%)
Query: 18 VFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLIRKGSIVELMKNEFYYWK 77
+ IEGLPGIG VG+LAAEHL+ E K +KF EL+ F QVL++ +E M EFY +
Sbjct: 22 LLIEGLPGIGHVGRLAAEHLVHEFKGEKFLELFCYDFPPQVLVKDDGTIEYMCAEFYAIR 81
Query: 78 SPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTREIITMGGYQVPELQGEP 137
P + +I++ G+TQ G + + +++ E+G + T+GG+ V +L E
Sbjct: 82 EP----KPMIVVLGNTQA--LSPIGQYHLAEEIVKIGIEYGANFVYTLGGFGVGKLCEEV 135
Query: 138 RVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLLLGIGKLRGMFGISLLGE 197
+V A T +L + KE ++++R D GG IVGAAGL+L L G+ GI L+GE
Sbjct: 136 KVYGATTSKELAKKLKEH------DILFRTD-GGGIVGAAGLMLMFADLNGIPGICLMGE 188
Query: 198 SLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILRKVEEMQRAMMEQQLPRP 257
+ GY++D AAKAVL K+ N+EI+M LE+RAK E+ + K+++ + M++ +P
Sbjct: 189 TPGYLIDPNAAKAVLEKFCKLENIEINMEELEKRAKGMEQFIEKIKKFEEEMLKAAQAKP 248
Query: 258 THEEEDR 264
EE+ R
Sbjct: 249 PSEEDLR 255
>gb|AAG19068.1| (AE005006) Vng0546c [Halobacterium sp. NRC-1]
Length = 250
Score = 158 bits (396), Expect = 6e-38
Identities = 97/267 (36%), Positives = 148/267 (55%), Gaps = 18/267 (6%)
Query: 1 MKETIIVVHERPEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLI 60
M E I P + DP +EGLPG+G VGKL AEH+I E ++ ++S +F QV +
Sbjct: 1 MDELSIEWVAEPSLDDPALVEGLPGVGHVGKLVAEHVIAEADSELVCRVHSEYFPPQVTV 60
Query: 61 RKGSIVELMKNEFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTR 120
S+ EL E + + + RDL+++TGD Q D+ G + V LD EF
Sbjct: 61 GDDSVAELAAAEIH---AVETGGRDLLVVTGDHQAQ--DTVGQYRVTEAFLDAAAEFDAT 115
Query: 121 EIITMGGYQVPELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLL 180
++ ++GG EL + V+ AV+ L K+ L D V E GG IVG++GLL
Sbjct: 116 DVFSLGGVPTGELVEDHDVIGAVSSAAL----KDGLADAGVEFRSEEPAGG-IVGSSGLL 170
Query: 181 LGIGKLRGMFGISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILR 240
+G+G RG L+GE+ GY+VD KAAKAVL+ + L+ E+D AL++RA+E EE++
Sbjct: 171 VGLGGKRGFDAACLMGETSGYLVDPKAAKAVLAVLGARLDFEMDEEALDDRAEEMEEVVS 230
Query: 241 KVEEMQRAMMEQQLPRPTHEEEDRGYL 267
++++M+ P+ +ED Y+
Sbjct: 231 RLQDMEET--------PSPGDEDLRYI 249
>emb|CAC12326.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 251
Score = 158 bits (395), Expect = 7e-38
Identities = 93/257 (36%), Positives = 156/257 (60%), Gaps = 13/257 (5%)
Query: 1 MKETIIVVHERPEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLI 60
M++ +++ ++ ++ P+ I GLPGIG VGK+AA++++++L K +++S + QV I
Sbjct: 1 MEKIVVIKYKDIKLKSPILIGGLPGIGNVGKIAADYIVEKLNMTKMYDIFSQYLPPQVFI 60
Query: 61 RKGSIVELMKNEFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTR 120
S+V L++N YY K +H DL+I+ GD Q T +E+ ++L +E G
Sbjct: 61 NDDSVVHLVRNSIYY-KKMRGKH-DLVILAGDFQ--GTTQEAQYELSYQVLQIAKEIGVS 116
Query: 121 EIITMGGYQVPELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDE-GGAIVGAAGL 179
I T+GGY + ++ +PRVL AVT +LV ++ V++ + E GG IVG+AGL
Sbjct: 117 MIYTLGGYSIGKIVDKPRVLGAVTDKNLVADLEKN------GVVFPKGEPGGGIVGSAGL 170
Query: 180 LLGIG-KLRGMFGISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEI 238
+LG+G +L M G L+GE+ GY D K+A VL+ + + L ++IDM+ +E R+K+ E+I
Sbjct: 171 ILGLGMELFNMNGACLMGETSGYFADPKSAMEVLNVLQRQLGIKIDMSDIETRSKQIEQI 230
Query: 239 LRKV-EEMQRAMMEQQL 254
K+ EE Q ++ L
Sbjct: 231 TGKMAEEFQNKQNKEDL 247
>pir||E69040 probable 3-isopropylmalate dehydratase - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622411|gb|AAB85784.1| (AE000895) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 189
Score = 154 bits (385), Expect = 1e-36
Identities = 84/199 (42%), Positives = 129/199 (64%), Gaps = 11/199 (5%)
Query: 69 MKNEFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTREIITMGGY 128
M+NEFYY + + RD II+ G+TQ + G +E+ G +LDFV+ +G R I T+GG
Sbjct: 1 MRNEFYYLRDAGGDERDYIILVGNTQGLSPE--GQYEICGMILDFVEGYGARRIFTLGGL 58
Query: 129 QVPELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLLLGIGKLRG 188
+ + RV A T +LVE KE VI R +GG I+GA+GLLLG+G+LRG
Sbjct: 59 ATGQPVEKARVYGAATSMELVEDLKEH------GVIMRSADGG-IIGASGLLLGMGRLRG 111
Query: 189 MFGISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILRKVEEMQRA 248
M G+ L+GE+ GY +DA+AA+A+L + ++ LE+D+ LEERA+ET++++ K ++M++
Sbjct: 112 MDGVCLMGETPGYFIDAEAARALLEVLLEMTKLEVDLEKLEERAEETKKMISKAQQMEQE 171
Query: 249 MMEQQLPRPTHEEEDRGYL 267
M+E+ +P EED Y+
Sbjct: 172 MIERMNLKP--GEEDLRYI 188
>pir||A75200 hypothetical protein PAB0075 - Pyrococcus abyssi (strain Orsay)
>gi|5457557|emb|CAB49048.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 241
Score = 90.9 bits (222), Expect = 1e-17
Identities = 74/238 (31%), Positives = 119/238 (49%), Gaps = 21/238 (8%)
Query: 12 PEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLIRKGSIVELMKN 71
PEI + VFIEG PGIGLVG +AA L +EL + + S LI +G ++
Sbjct: 11 PEIENAVFIEGYPGIGLVGHIAANFLAKELNMEMIGYVESSFIPPMTLILEGKPNPPLR- 69
Query: 72 EFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTREIITMGGYQVP 131
+Y K +LII D +PPT E+ ++ ++++E ++I++GG +
Sbjct: 70 --FYGKD------NLIIAVADIYLPPTLIN---EIAKEIANYLKENNAEKVISLGGMGIG 118
Query: 132 ELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLLLGIGKLRGMFG 191
+ + V E +LK+ V ++ E G+I G +G LL RG+
Sbjct: 119 IFKEKFEVWGVGG----TEEENNELKNLGVKLL----EYGSISGMSGRLLWEASKRGIKS 170
Query: 192 ISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILRKV-EEMQRA 248
+LGE+ G D +AA V+ + K+LNL + + L A+ EE LRK+ E+M++A
Sbjct: 171 YVILGETFGDRPDPRAAANVVEVLNKMLNLNVSVEPLLREAEMIEEQLRKMHEQMEKA 228
>gi|11498850 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429657|pir||B69406 probable 3-isopropylmalate
dehydratase - Archaeoglobus fulgidus
>gi|2649332|gb|AAB89995.1| (AE001018) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 239
Score = 88.5 bits (216), Expect = 7e-17
Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 22/257 (8%)
Query: 3 ETIIVVHERPEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLIRK 62
ET I+V ++ ++ +P+ I PGIGLVG +A H I ELK + + S + +
Sbjct: 4 ETEIIV-DKVDVENPILITSFPGIGLVGTIATAHYIMELKLESIGIVDSRLLPPVASLYE 62
Query: 63 GSIVELMKNEFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTREI 122
G I+ ++ ++S D ++I D + P + ++ K++ F E R +
Sbjct: 63 GVILPPVR----VYQSAD---LGFVLIHSDVPIIPQAA---IDMSKKIVQFAAEINARRV 112
Query: 123 ITMGGYQVPELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLLLG 182
+ G V + + RV AA T +L+E K+ + G I G AG ++
Sbjct: 113 YSFAG--VATFEDKKRVFAAATSKELLEEVKDHAEIFKT---------GTISGIAGSIMN 161
Query: 183 IGKLRGMFGISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILRKV 242
M GI LLGE+LG+ D +AA +++ AV KI+N + + L + A+ E ++K+
Sbjct: 162 ECVAAKMPGIVLLGETLGFNPDPRAAASLIEAVNKIMNWNVSVEKLLKEAEMIEAQMQKL 221
Query: 243 EEMQRAMMEQQLPRPTH 259
E R E++ P +
Sbjct: 222 AEQARMQEERKEEFPMY 238
>pir||D71233 probable 3-isopropylmalate dehydratase - Pyrococcus horikoshii
>gi|3256512|dbj|BAA29195.1| (AP000001) 241aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 87.4 bits (213), Expect = 2e-16
Identities = 69/238 (28%), Positives = 121/238 (49%), Gaps = 21/238 (8%)
Query: 12 PEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLIRKGSIVELMKN 71
P+I +P+ IEG PGIGLVG +AA L +ELK + + S LI +G ++
Sbjct: 11 PKIENPILIEGYPGIGLVGHIAANFLAKELKMEVIGYVESSFIPPMSLILEGKPNPPLR- 69
Query: 72 EFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTREIITMGGYQVP 131
+Y K ++II D +PPT E+ ++ +++++ ++I++GG +
Sbjct: 70 --FYGKD------NIIIAVADIYLPPTLIN---EIAKEIANYLEQNKAEKVISLGGMGIG 118
Query: 132 ELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLLLGIGKLRGMFG 191
+ + V E ++L+D V ++ E G+I G +G LL RG+
Sbjct: 119 IFKDKFEVWGVGG----TEEENKELQDLGVKIL----EYGSISGMSGKLLWEASRRGLKS 170
Query: 192 ISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILRKV-EEMQRA 248
+LGE+ G D +AA V+ + ++L L + + L + A+ EE LRK+ E+M++A
Sbjct: 171 YVILGETFGDRPDPRAAANVVEVLDRMLTLNVSVEPLLKEAEMIEEQLRKMHEQMEKA 228
>emb|CAC12561.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 252
Score = 71.4 bits (172), Expect = 1e-11
Identities = 56/251 (22%), Positives = 114/251 (45%), Gaps = 19/251 (7%)
Query: 3 ETIIVVHERPEIYDPVFIEGLPGIGLVGKLAAEHLIQELKAKKFAELYSPHFMHQVLIRK 62
E+ ++ E+ +PV + G G G LAA ++++ L + A L S H +
Sbjct: 13 ESQVMELEKRNYNNPVVLCGFAGSTPTGVLAASYIVETLGMHQVAHLISQHIPPVAVFVG 72
Query: 63 GSIVELMKNEFYYWKSPDDEHRDLIIITGDTQVPPTDSYGHFEVVGKMLDFVQEFGTREI 122
G + ++ F + + + ++ +VP + ++ +E+ +++++ + G EI
Sbjct: 73 GKL----RHPFRIYANNSNT-----VLVAMCEVPISSAH-IYEISNTLMNWIDQVGASEI 122
Query: 123 ITMGGYQVPELQGEPRVLAAVTHPDLVEYYKEKLKDCSVNVIWREDEGGAIVGAAGLLLG 182
+ M G + E V A P L ++ K ++ + I G G +L
Sbjct: 123 VIMEGSPANGIPEERPVFAVAEKPKLDKFKKAGIQPA---------DSAIIAGMGGGILN 173
Query: 183 IGKLRGMFGISLLGESLGYIVDAKAAKAVLSAVAKILNLEIDMTALEERAKETEEILRKV 242
+R + G+S + + I D A +++ A+ K NL+I LEE+ K +E ++K+
Sbjct: 174 ECLVRKITGLSFITPTSVDIPDPGAVLSIIEAINKAYNLKIKTDLLEEQVKALDEQIKKI 233
Query: 243 EEMQRAMMEQQ 253
EE + + E+Q
Sbjct: 234 EEQYKELQEKQ 244
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102780957
Number of Sequences: 2977
Number of extensions: 4350269
Number of successful extensions: 15856
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15834
Number of HSP's gapped (non-prelim): 11
length of query: 267
length of database: 189,106,746
effective HSP length: 55
effective length of query: 212
effective length of database: 156,189,961
effective search space: 33112271732
effective search space used: 33112271732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)