BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0571 (PAB0571) DE:Hypothetical protein
(451 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (st... 917 0.0
gi|10954496 M. jannaschii predicted coding region MJECL04 [Metha... 556 e-157
pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii ... 476 e-133
pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii ... 370 e-101
pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (st... 369 e-101
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ... 362 4e-99
gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfat... 358 6e-98
pir||G69123 conserved hypothetical protein MTH196 - Methanobacte... 330 2e-89
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ... 329 5e-89
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st... 323 2e-87
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st... 311 1e-83
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st... 310 2e-83
pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii ... 263 2e-69
pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st... 257 2e-67
pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii ... 250 3e-65
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ... 238 1e-61
pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (st... 221 1e-56
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.] 202 8e-51
pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (st... 153 4e-36
pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (st... 145 8e-34
pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii ... 98 2e-19
sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir... 84 4e-15
>pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (strain Orsay)
>gi|5458278|emb|CAB49767.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 451
Score = 917 bits (2344), Expect = 0.0
Identities = 451/451 (100%), Positives = 451/451 (100%)
Query: 1 MQEETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDNLRH 60
MQEETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDNLRH
Sbjct: 1 MQEETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDNLRH 60
Query: 61 FRETAERVFPEVKYVREDWESILHALKGKIIIIDEFPNLIKEDPKVVSLFQRAIDLELSN 120
FRETAERVFPEVKYVREDWESILHALKGKIIIIDEFPNLIKEDPKVVSLFQRAIDLELSN
Sbjct: 61 FRETAERVFPEVKYVREDWESILHALKGKIIIIDEFPNLIKEDPKVVSLFQRAIDLELSN 120
Query: 121 SNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVEIY 180
SNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVEIY
Sbjct: 121 SNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVEIY 180
Query: 181 GFTDGIPYYIIQVKLPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIALG 240
GFTDGIPYYIIQVKLPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIALG
Sbjct: 181 GFTDGIPYYIIQVKLPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIALG 240
Query: 241 KTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLADNFLAFWFR 300
KTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLADNFLAFWFR
Sbjct: 241 KTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLADNFLAFWFR 300
Query: 301 YIYPNLSRIEEGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLNINFTKIGRWWHKDKEID 360
YIYPNLSRIEEGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLNINFTKIGRWWHKDKEID
Sbjct: 301 YIYPNLSRIEEGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLNINFTKIGRWWHKDKEID 360
Query: 361 IVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWEKSYGLIARNIEGKE 420
IVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWEKSYGLIARNIEGKE
Sbjct: 361 IVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWEKSYGLIARNIEGKE 420
Query: 421 NLKGKGYLVWDLRDFNLVYRQPLREYHPRGL 451
NLKGKGYLVWDLRDFNLVYRQPLREYHPRGL
Sbjct: 421 NLKGKGYLVWDLRDFNLVYRQPLREYHPRGL 451
>gi|10954496 M. jannaschii predicted coding region MJECL04 [Methanococcus
jannaschii] >gi|2496210|sp|Q60260|YZ04_METJA
HYPOTHETICAL PROTEIN MJECL04 >gi|2129021|pir||D64510
hypothetical protein MJECL04 - Methanococcus jannaschii
plasmid pURB800 >gi|1500652|gb|AAC37078.1| (L77118) M.
jannaschii predicted coding region MJECL04
[Methanococcus jannaschii]
Length = 439
Score = 556 bits (1418), Expect = e-157
Identities = 261/439 (59%), Positives = 343/439 (77%), Gaps = 9/439 (2%)
Query: 4 ETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDNLRHFRE 63
+ E+ELKA+ E L S FE IVIYGRRR+GKT+L L++V+ H+YYLAVE DNL+HF+
Sbjct: 4 DREEELKALNEKLDSNNFEFIVIYGRRRIGKTKLALKSVENREHIYYLAVEGDNLKHFKR 63
Query: 64 TAERVFPEVKYVREDWESILHALKGKIIIIDEFPNLIKEDPKVVSLFQRAIDLELSNSNT 123
A +V P ++Y +EDWE+ + LK KIIIIDEFPNLIKE+P V+SLFQR +D+ L N+ T
Sbjct: 64 YASKVEPTIEYAKEDWEAYFNFLKDKIIIIDEFPNLIKENPNVLSLFQRIVDIHLKNTKT 123
Query: 124 KIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVEIYGFT 183
K+I+LGSS+S++ EKVLS KSPLYGR+TG +K+KPL+F LKEFFP+A WEELVEIYGF
Sbjct: 124 KLIILGSSISMMGEKVLSYKSPLYGRKTGVLKIKPLKFKHLKEFFPKAIWEELVEIYGFA 183
Query: 184 DGIPYYIIQVKLPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIALGKTT 243
DGIPYY+ +VKLPFW++L+KE+ SF + EVDFL+KYEF E Y++ILEAIA G T
Sbjct: 184 DGIPYYLEKVKLPFWDYLDKEIKRVDSFLRYEVDFLMKYEFEEPTTYKKILEAIAFGNHT 243
Query: 244 IKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLADNFLAFWFRYIY 303
+ EIK++ G +HSD+TPYL+NL+E + + R+ PITE SK+GRYY+ DNF+AF+FRYI+
Sbjct: 244 LGEIKNYLGFKHSDLTPYLKNLIEVEFIERQTPITESVKSKKGRYYIKDNFIAFYFRYIF 303
Query: 304 PNLSRIEEGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLN------INFTKIGRWWHKDK 357
PNLS IEEG F IEEI+ DY+QYLG+VFEKVA++FL++LN F KIGRWWH+ +
Sbjct: 304 PNLSAIEEGIFDIEEIKADYNQYLGFVFEKVAKEFLIELNKMNKLPFKFLKIGRWWHRGE 363
Query: 358 EIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWEKSYGLIARNIE 417
EID++ALN+ K LF EVKWK LK+++ +KI R+L +K KL GLDD+EK Y ++ + IE
Sbjct: 364 EIDLIALNDNDKKALFVEVKWKDLKDRDVKKIYRDLYRKSKLVGLDDYEKYYAIVGKKIE 423
Query: 418 GKENLKGKGYLVWDLRDFN 436
KEN L++DL DF+
Sbjct: 424 SKEN---GDCLLFDLEDFS 439
>pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii
>gi|3257682|dbj|BAA30365.1| (AP000005) 320aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 320
Score = 476 bits (1212), Expect = e-133
Identities = 227/318 (71%), Positives = 265/318 (82%), Gaps = 6/318 (1%)
Query: 134 IITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVEIYGFTDGIPYYIIQV 193
+ITEKVLS KSPLYGRRTGS+KL+P+ FF L+EFFP SWEELVEIYG TDGIP+YIIQV
Sbjct: 1 MITEKVLSYKSPLYGRRTGSLKLRPMNFFTLREFFPSCSWEELVEIYGMTDGIPFYIIQV 60
Query: 194 KLPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIALGKTTIKEIKDFTGM 253
K PFWE LE+EL +P+SFFKDEVDFLL+YEF+E Y+RILEAIALGKTT+KEIKDFTG+
Sbjct: 61 KPPFWELLEEELKNPISFFKDEVDFLLRYEFSEVTTYKRILEAIALGKTTLKEIKDFTGL 120
Query: 254 RHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLADNFLAFWFRYIYPNLSRIEEGT 313
R+SDITPYLRNL+E DL+VREVPITEK SK+GRYY+ DNFLAFWFR+IYPNLSRIEEG
Sbjct: 121 RNSDITPYLRNLIEADLIVREVPITEKKTSKKGRYYVLDNFLAFWFRFIYPNLSRIEEGI 180
Query: 314 FSIEEIRGDYSQYLGWVFEKVARQFLLKLN------INFTKIGRWWHKDKEIDIVALNER 367
F+++EI+G+Y +YLGWVFEK+ARQFL++LN F KIGRWW+K++EIDIVALNER
Sbjct: 181 FNVDEIKGEYPRYLGWVFEKIARQFLIELNKINKLPFKFEKIGRWWYKEEEIDIVALNER 240
Query: 368 GKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWEKSYGLIARNIEGKENLKGKGY 427
K L EVKWK LKE+EA +IL L KK KL GL+ WEK YGLIAR I+ KE L GY
Sbjct: 241 EKKGLLVEVKWKTLKEREAREILEVLNKKSKLLGLEGWEKYYGLIAREIKRKEPLIEDGY 300
Query: 428 LVWDLRDFNLVYRQPLRE 445
LVWDL DF + +Q RE
Sbjct: 301 LVWDLEDFEEIVKQKSRE 318
>pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii
>gi|3257390|dbj|BAA30073.1| (AP000004) 471aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 471
Score = 370 bits (941), Expect = e-101
Identities = 208/455 (45%), Positives = 294/455 (63%), Gaps = 25/455 (5%)
Query: 4 ETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVES---DNLRH 60
+ E+EL + E S EL++IYGRRR+GKT L+L + HVY+LA E DNLR
Sbjct: 13 DRERELAFLEERYASGNAELLIIYGRRRIGKTELLLHFARNKEHVYFLASEKPYRDNLRE 72
Query: 61 FRET-----AERVFPEVKYVREDWESIL----HALKGK--IIIIDEFPNLIKEDPKVVSL 109
+ +R+F V++ D + +L ++G+ ++IIDEFP LI+ V+SL
Sbjct: 73 LQRMMGDFLGDRLFSRVEF--SDIDELLIEFSKRVQGRRVVLIIDEFPYLIEHYKPVLSL 130
Query: 110 FQRAIDLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFP 169
QRA D+ELS S+ +IL GSSVS + +VL KSPLYGRRTG K+ L F++L+EFFP
Sbjct: 131 IQRAWDMELSKSDLMLILCGSSVSSMETEVLGYKSPLYGRRTGQWKVGELPFWSLREFFP 190
Query: 170 EASWEELVEIYGFTDGIPYYIIQV--KLPFWEWLEKELLSPLSFFKDEVDFLLKYEFTET 227
S EELV++YG GIP Y++Q + F E + +++LS +F +E + LLK E E
Sbjct: 191 SYSTEELVKVYGVLGGIPAYLLQFNPEKNFDENVVEKVLSKGAFLYEEAEILLKEEMREP 250
Query: 228 RVYRRILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPIT--EKPYSKR 285
Y IL+AIA G++ EI + TG+ S ++ YL L + +V REVP+T K KR
Sbjct: 251 ANYFIILQAIASGRSRFGEIVNATGLDKSLVSKYLNVLEKLGMVEREVPVTASRKEALKR 310
Query: 286 GRYYLADNFLAFWFRYIYPNLSRIEEGTFSI--EEIRGDYSQYLGWVFEKVARQ---FLL 340
GRY + DN+LAFWFRY+ PN S +E G E + D+ +Y+G VFE++ R+ F
Sbjct: 311 GRYSITDNYLAFWFRYVLPNKSYLEAGLGKEIWERSKEDFKEYMGGVFERLLRKPEVFTK 370
Query: 341 KLNINFTKIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLT 400
+ F+++GRWW+K++EID+VALNER K VLF EVKWK L ++EA IL++LE+K KL
Sbjct: 371 LTDFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGILKDLERKAKLV 430
Query: 401 GLDDWEKSYGLIARNIEGKENLKGKGYLVWDLRDF 435
LD+WEK YGL+ +++EGKE L+ + YLVWDL+DF
Sbjct: 431 ELDNWEKYYGLVTKSLEGKEKLREESYLVWDLKDF 465
>pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (strain Orsay)
>gi|5458720|emb|CAB50207.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 469
Score = 369 bits (936), Expect = e-101
Identities = 203/458 (44%), Positives = 290/458 (62%), Gaps = 25/458 (5%)
Query: 6 EKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLA---VESDNLRHFR 62
E+EL ++E + S K E IVIYGRRR+GKT LILE ++ + +Y LA E+DNL+ F
Sbjct: 6 EEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNLKRFS 65
Query: 63 ETAERVFPEV---KYVREDWESILHALKGK-----IIIIDEFPNLIKEDPKVVSLFQRAI 114
E + F K ++W++ L K I+ IDEFP L+K + + S+ Q
Sbjct: 66 ERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASILQEYW 125
Query: 115 DLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWE 174
DL+LS S +I+ GSS++++ EK+L KSP+YGRRT +KLKP++FF+ ++F P E
Sbjct: 126 DLKLSKSKIFLIICGSSITMM-EKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPRYPIE 184
Query: 175 ELVEIYGFTDGIPYYIIQVKLPFWEWLEKELLS---PLSFFKDEVDFLLKYEFTETRVYR 231
+ + YG G P Y++ K + +E+ LLS P SF + F+L+ E E R Y
Sbjct: 185 DSLRAYGILGGTPAYLL--KFDDKKSIEENLLSYFRPDSFLYQDALFILREELNEPRNYF 242
Query: 232 RILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLA 291
I+EAIA G T++ EI + T + + YL L++ DLV REVPITE S++GRYY+
Sbjct: 243 AIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYYIN 302
Query: 292 DNFLAFWFRYIYPNLSRIE--EGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLNI----- 344
D + AFWFRY+ PN+ IE +G ++ + D+ QYL VFE V RQFL++LN
Sbjct: 303 DPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESLLT 362
Query: 345 -NFTKIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLD 403
+F KIGRWWHK +EID+VALNE K VLF EV+WK+L E E K +R+L KK +L GL+
Sbjct: 363 PSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVGLE 422
Query: 404 DWEKSYGLIARNIEGKENLKGKGYLVWDLRDFNLVYRQ 441
+W++ YGL+ + I GKE L+ +G+LVWDL+DF L+ R+
Sbjct: 423 NWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFELLDRE 460
>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
>gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 496
Score = 362 bits (920), Expect = 4e-99
Identities = 202/455 (44%), Positives = 282/455 (61%), Gaps = 25/455 (5%)
Query: 4 ETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVES---DNLRH 60
+ +KEL + E L S K + IVIYGRRRVGKT LILE ++ +Y LA E+ +NL
Sbjct: 41 DRKKELGLLEERLKSGKAQFIVIYGRRRVGKTALILEFLRRHGGLYLLARETSEIENLER 100
Query: 61 FRETAERVFPEVKYVREDWESI--------LHALKGKIIIIDEFPNLIKEDPKVVSLFQR 112
F F + + S+ A K II IDEFP L+K + + S+ Q
Sbjct: 101 FSLRLAEYFNDSFLKKNPLRSLDAFFEYLSTKAEKPFIIAIDEFPYLVKGNKALPSILQE 160
Query: 113 AIDLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEAS 172
+++LS +I+ GSSVS+ TE++L KSPLYGRRT +KLKPL+FF +EF P+ S
Sbjct: 161 YWEMKLSKKKIFLIVSGSSVSM-TERLLGYKSPLYGRRTAQLKLKPLDFFNAREFLPKYS 219
Query: 173 WEELVEIYGFTDGIPYYIIQVKLPFWEWLEKELLSPL---SFFKDEVDFLLKYEFTETRV 229
E+ V +YG G P Y+++ + LE+ L S S + F+L+ E E R
Sbjct: 220 LEDFVRVYGILGGTPAYLLEFSDE--KSLEENLKSYFRVDSLLYGDALFILREELDEPRN 277
Query: 230 YRRILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYY 289
Y I+EAIA G TT+ EI + TG+ + + YL L++ DLV REVPIT S++GRYY
Sbjct: 278 YFAIMEAIARGNTTLGEIVNETGLERATVGKYLSVLIDLDLVRREVPITASRKSRKGRYY 337
Query: 290 LADNFLAFWFRYIYPNLSRIEEGT--FSIEEIRGDYSQYLGWVFEKVARQFLLKLN---- 343
+ADN+ AFWFRY+YPN IE G ++ + D Y G VFE VA++FLL+LN
Sbjct: 338 IADNYFAFWFRYVYPNADLIESGNGELLVDTVMDDIDHYTGEVFEGVAKEFLLRLNKSER 397
Query: 344 --INFTKIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTG 401
F+++GRWW+K++EID+VALNER K VLF EVKWK L ++EA IL++L++K KL G
Sbjct: 398 LPFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGILKDLKRKAKLVG 457
Query: 402 LDDWEKSYGLIARNIEGKENLKGKGYLVWDLRDFN 436
LD+W K YGL+A+++ GK+ +K +G+L WDL D +
Sbjct: 458 LDEWGKHYGLVAKSVRGKDEIKEEGWLAWDLEDIH 492
>gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 420
Score = 358 bits (910), Expect = 6e-98
Identities = 193/410 (47%), Positives = 271/410 (66%), Gaps = 21/410 (5%)
Query: 6 EKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDNLRHFRETA 65
E+EL+A+++ L+S ELI+IYGRRR+GKT LI+ AV G+ +YYLA E +NLR F+E
Sbjct: 10 ERELQALKKRLSSNDLELIIIYGRRRIGKTFLIINAVNGYDFIYYLATEKNNLRKFKELT 69
Query: 66 ERVFPEVKYVREDWESILHALKGKIIIIDEFPNLIKEDPKVVSLFQRAIDLELSNSNTKI 125
E + ++KYV+EDWE+I H L+ KIIIIDEFP +IKED ++S FQ+ +D L S TK+
Sbjct: 70 ESKYEDIKYVKEDWEAIFHYLRDKIIIIDEFPYMIKEDESILSTFQKIVDETLKGSKTKL 129
Query: 126 ILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVEIYGFTDG 185
ILLGSS+S++ E +S KSPLYGRRT S++LK L+F LK F S + + +YGF G
Sbjct: 130 ILLGSSISMM-EDAISYKSPLYGRRTASIELKELKFKDLKGF--NFSLIDAIHVYGFAGG 186
Query: 186 IPYYIIQVKLPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIALGKTTIK 245
+P+Y+ + K PF +W+ EL SF KDE+DF+L+YEF+E Y+ IL AI+ GK T+
Sbjct: 187 VPFYLTKAKTPFLKWINAELKEVDSFIKDEIDFMLRYEFSEIGTYKEILHAISSGKNTLG 246
Query: 246 EIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLADNFLAFWFRYIYPN 305
EIKDF + D++ YL L + ++ +E P K K RYY+ DNF FWF +IYPN
Sbjct: 247 EIKDFVRI-SGDVSSYLNKLEKIGIIGKEFPYKMK---KGARYYIKDNFTLFWFTFIYPN 302
Query: 306 LSRIEEGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLNINFTKIGRWWHKDKEIDIVALN 365
LS IEEG + I+E +Y+ YLG +FEK+AR+++ ++ K+ R W KD EIDI
Sbjct: 303 LSLIEEGIYEIKE--DEYNVYLGRIFEKIAREYV--EDVYKVKVERLWFKDVEIDIY--- 355
Query: 366 ERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWEKSYGLIARN 415
G G+ E KW + EK+L EL++K + GLD K Y + A++
Sbjct: 356 --GDGIA-GECKWS--EGINGEKVLYELKRKVEDLGLD--VKKYIIFAKS 398
>pir||G69123 conserved hypothetical protein MTH196 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621241|gb|AAB84702.1| (AE000807) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 458
Score = 330 bits (838), Expect = 2e-89
Identities = 185/457 (40%), Positives = 272/457 (59%), Gaps = 37/457 (8%)
Query: 4 ETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDNLRHFRE 63
+ E+EL+ + E IVIYGRRRVGKT L+LE + +Y LA E+ NL + +
Sbjct: 4 DRERELQFLERRYEMGGPEFIVIYGRRRVGKTALLLEFISRHGGIYLLARETSNLENLKR 63
Query: 64 TAERVFPEVKYVRED---------WESILHALKGK-----IIIIDEFPNLIKEDPKVVSL 109
++R+ +Y +D W++ L L K +++IDEFP L+K D + S+
Sbjct: 64 FSDRLS---EYFGDDFLKRNPFQNWDAFLEYLNQKATERLVVVIDEFPYLVKGDRSLPSI 120
Query: 110 FQRAIDLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFP 169
Q DL+LSN +I+ GSS+S++ EK+L KSP+YGRRTG + LKP++F +EF P
Sbjct: 121 LQEYWDLKLSNGRIFLIICGSSISMM-EKLLGYKSPIYGRRTGQINLKPVDFLHAREFLP 179
Query: 170 EASWEELVEIYGFTDGIPYYIIQ------VKLPFWEWLEKELLSPLSFFKDEVDFLLKYE 223
S E+ ++ YG G P ++++ +K E+L + S + F+L+ E
Sbjct: 180 GYSLEDFIKAYGILGGSPAHLLEFDDSKTIKENLLEYLRSD-----SLLYQDAFFVLREE 234
Query: 224 FTETRVYRRILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYS 283
E R Y I+EA+A GKT++ EI + TG+ + + YL L+E D V RE+PIT S
Sbjct: 235 LEEPRNYFAIMEAVAAGKTSLGEIMNETGLSRATVAKYLSVLIELDFVKREIPITASRKS 294
Query: 284 KRGRYYLADNFLAFWFRYIYPNLSRIEEGTFS--IEEIRGDYSQYLGWVFEKVARQFL-- 339
+RGRYY+ DN+ AFWFRYI+PN+ IE +E I D YLG +FE VA +FL
Sbjct: 295 RRGRYYIKDNYFAFWFRYIHPNIDFIESERRKELLELIIDDLPNYLGGIFENVAIEFLPL 354
Query: 340 --LKLNINFTKIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKG 397
KL KIGRWWHK++EID+VA NE+ + + EVKWK L + EA KIL++L +K
Sbjct: 355 ISNKLPFKPLKIGRWWHKNEEIDLVAFNEKEEKAILIEVKWKTLNKIEANKILKDLNRKS 414
Query: 398 KLTGLDDWEKSYGLIARNIEGKENLKGKGYLVWDLRD 434
K+ + +WE+ +G+IA+ ++ KE +KG L+WDL D
Sbjct: 415 KILKMKEWEQYHGIIAKRVKDKEKIKGG--LIWDLED 449
>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
>gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 452
Score = 329 bits (834), Expect = 5e-89
Identities = 185/439 (42%), Positives = 273/439 (62%), Gaps = 13/439 (2%)
Query: 6 EKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVE---SDNLRHFR 62
++EL+ + E L + L+VIYGRRRVGKT L+ + ++ +Y+L +L+ F
Sbjct: 14 KRELETL-EKLYEKGANLVVIYGRRRVGKTALLRKFLEEKRGIYFLCSRRGYEKDLKRFS 72
Query: 63 ETAERVFPEVKYVREDWESILHAL--KGK-IIIIDEFPNLIKEDPKVVSLFQRAIDLELS 119
+ + F + ED+E L +GK +++IDEFP LI+ VVS+FQR +DL L
Sbjct: 73 QELSKFFG-IPLSFEDFEDAFEFLSKQGKLVVVIDEFPYLIESYKPVVSVFQRIVDLVLE 131
Query: 120 NSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVEI 179
S +IL GSS+ ++ + VL K+PLYGR G MK+KP FF + E++ +E+LV +
Sbjct: 132 GSEVMLILCGSSIGMMEKDVLGYKAPLYGRAQGIMKVKPFRFFDMVEWYGR-DFEKLVRL 190
Query: 180 YGFTDGIPYYIIQVKLPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIAL 239
YG T G+P Y+ + E + + P SF +E LL E VY I+EAIAL
Sbjct: 191 YGVTWGVPRYMEFFREGSDEEIIRNFFDPSSFLFNEAKLLLMEELRNPAVYGEIIEAIAL 250
Query: 240 GKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLADNFLAFWF 299
G T + EI +++ + D+ YL+ L E +V R PIT++ +KRG Y + D + F++
Sbjct: 251 GNTRLSEIANYSMIDAKDLPAYLKTLQELGIVKRITPITKRN-AKRGVYVIEDEYFRFYY 309
Query: 300 RYIYPNLSRIEE--GTFSIEEIRGDYSQYLGWVFEKVARQFLLKLNINFTKIGRWWHKDK 357
R++ P IE +IE+ R +++ YLG FEKV+++FLL + ++ KIG+WW+K +
Sbjct: 310 RFVNPYYEEIESLNPEPAIEDFRKNFNSYLGETFEKVSKEFLLAIG-DYPKIGKWWYKGE 368
Query: 358 EIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWEKSYGLIARNIE 417
EID+VALNER K LF EVKW+ LKE+EA++IL+ LEKK L LD W K YG+IAR +E
Sbjct: 369 EIDLVALNEREKKALFVEVKWRGLKEREAKRILKRLEKKSMLINLDGWIKDYGVIARRVE 428
Query: 418 GKENLKGKGYLVWDLRDFN 436
GKE+L+ +G+LVWDL DFN
Sbjct: 429 GKESLRDEGWLVWDLEDFN 447
>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
>gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 462
Score = 323 bits (820), Expect = 2e-87
Identities = 181/445 (40%), Positives = 273/445 (60%), Gaps = 20/445 (4%)
Query: 6 EKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLA----VESDNLRHF 61
++ELK + E E F L V+YGRRRVGKT L+ + ++ +Y+L E D R
Sbjct: 14 KRELKVL-ERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQRGYEKDLKRFS 72
Query: 62 RETAERVFPEVKYVREDWESILHALKGK---IIIIDEFPNLIKEDPKVVSLFQRAIDLEL 118
+E + + V++ E ++ L+G+ ++I DEFP LI+ D V+S FQ +D+ L
Sbjct: 73 QEISSFIGAPVRF--ESFKDAFKFLRGQGKLLVIFDEFPYLIEADKGVISEFQEIVDIVL 130
Query: 119 SNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVE 178
S IIL GSSV ++ ++LS KSPLYGR +G +K+KP FF + E+F + +E L+
Sbjct: 131 EGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWFGK-DFERLLR 189
Query: 179 IYGFTDGIPYYIIQVKLPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIA 238
+YG T GIP Y+ K + + +P +F +E LL E Y +I+EAIA
Sbjct: 190 LYGVTWGIPKYMEFFKTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTRYMQIIEAIA 249
Query: 239 LGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLADNFLAFW 298
+GKT + EI + G+ D++ YLR L +V REVPITE+ +KRG Y + D + F+
Sbjct: 250 MGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERK-AKRGIYVIEDEYFRFY 308
Query: 299 FRYIYPNLSRIEE--GTFSIEEIRGDYSQYLGWVFEKVARQFLLKLN------INFTKIG 350
R++ P+ I+ +I + +++ YLG FEKVAR+FL+++N F +IG
Sbjct: 309 HRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGLPFKFMEIG 368
Query: 351 RWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWEKSYG 410
+WW + +EID++ALN K VL EVKWK+L EKEA +L++LE+KG+L GL++W+K YG
Sbjct: 369 KWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVGLENWQKYYG 428
Query: 411 LIARNIEGKENLKGKGYLVWDLRDF 435
LIA+ I+ KE LK +G+L+WDL+DF
Sbjct: 429 LIAKGIKCKELLKSEGWLLWDLKDF 453
>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
>gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 311 bits (788), Expect = 1e-83
Identities = 185/458 (40%), Positives = 255/458 (55%), Gaps = 22/458 (4%)
Query: 4 ETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDNLRHFR- 62
+ E ELKA+ + S L++IYGRRR GKTRL++E +G P +Y +E R R
Sbjct: 7 DREDELKALEDQWNSTP-SLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQIRR 65
Query: 63 ---ETAERVFPEVKYVREDWESILHALKGKI-----IIIDEFPNLIKEDPKVVSLFQRAI 114
E AE E+ DW + L K+ II+DEF IK D +VS QRA
Sbjct: 66 LREELAEHFNDELFLSFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSALQRAW 125
Query: 115 DLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWE 174
D + S ++L GS + ++ ++VLS SPLYGRRT S LKPL F +FF S+E
Sbjct: 126 DHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFD--SFE 183
Query: 175 ELVEIYGFTDGIPYYIIQVKL--PFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRR 232
+E+Y GIP Y+I ++E+ L FF DE LL E E + Y
Sbjct: 184 VGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELRELKTYFS 243
Query: 233 ILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLAD 292
IL A A GKT EI + G+ I PYL L+ + RE+PI KRG Y L D
Sbjct: 244 ILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARN--DKRGIYKLKD 301
Query: 293 NFLAFWFRYIYPNLSRIEEGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLN------INF 346
L WF + N + IE G S ++++ D + G FE VAR+FL++LN F
Sbjct: 302 PMLLTWFSIVPKNRTGIELGIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRGRLPFRF 361
Query: 347 TKIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWE 406
T+IGRWW+K +EIDIVA+NER K +L AEVKWK+L ++EA+ IL++L++K KL L+ W+
Sbjct: 362 TRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLMNLEGWD 421
Query: 407 KSYGLIARNIEGKENLKGKGYLVWDLRDFNLVYRQPLR 444
S+ L+A+N+ GK L+ G+ VWDL D L + + R
Sbjct: 422 ASFALVAKNVHGKSKLREYGFNVWDLEDLKLHFEKKFR 459
>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
>gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 310 bits (786), Expect = 2e-83
Identities = 179/450 (39%), Positives = 262/450 (57%), Gaps = 25/450 (5%)
Query: 4 ETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDN-LRHFR 62
+ E EL+ +R+ +S + ELI+IYGRRR+GKT L+ + + +Y LA ES+ L F
Sbjct: 9 DREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEESETVLEDFS 68
Query: 63 ETAERVFPEVKYVRED----WESILHALKGK-----IIIIDEFPNLIKEDPKVVSLFQRA 113
E F + +++E+ W + L GK +++IDE + K +S Q+
Sbjct: 69 ERLAEYFND-PFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKDFLSTLQKY 127
Query: 114 IDLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASW 173
DL LS++ +IL GS VS + E +LS KSP+YGRRTG+ K++ ++FF +F +
Sbjct: 128 WDLYLSDTKIMLILCGSLVSFM-EGILSAKSPIYGRRTGAWKVEEMDFFNAWKFH-DVDA 185
Query: 174 EELVEIYGFTDGIPYYIIQVK--LPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYR 231
E +V IY G+P Y+ L FWE L + LLS + + DE +LLK E + Y
Sbjct: 186 ETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELRDVSRYF 245
Query: 232 RILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLA 291
IL AIALG T +I D + + YL L E + E P+ K R Y +
Sbjct: 246 SILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKG---RTIYRIR 302
Query: 292 DNFLAFWFRYIYPNLSRIEEGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLN------IN 345
DN AFWFR++YP S IE G +EEI+G+++ YLG FE +ARQFL++LN
Sbjct: 303 DNLFAFWFRFVYPRRSEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGRLPFR 362
Query: 346 FTKIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDW 405
FTKIGRWWH+ +E+DIVA+NE K + V+WK L K+ +IL +L +K +L GL+ W
Sbjct: 363 FTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIGLEGW 422
Query: 406 EKSYGLIARNIEGKENLKGKGYLVWDLRDF 435
EK Y ++AR+++GKE+L+ + +WDLRDF
Sbjct: 423 EKHYAIVARDVQGKEDLEDNSH-IWDLRDF 451
>pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii
>gi|3257241|dbj|BAA29924.1| (AP000003) 319aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 319
Score = 263 bits (666), Expect = 2e-69
Identities = 145/324 (44%), Positives = 208/324 (63%), Gaps = 17/324 (5%)
Query: 125 IILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVEIYGFTD 184
+IL GS VS + E +LS KSP+YGRRTG+ K++ + FF + +F P E ++IYG
Sbjct: 2 LILCGSLVSFM-EGILSGKSPIYGRRTGTWKVEEMSFFDVLKFHP-IDIETAIKIYGVFG 59
Query: 185 GIPYYIIQVK--LPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIALGKT 242
G+P Y + FWE ++ +LS + + DE +LLK E + Y IL AI+LG +
Sbjct: 60 GVPQYWVDYDPGKDFWENIKDLVLSKGAKYYDEPKYLLKEELRDVSRYFSILRAISLGYS 119
Query: 243 TIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGR--YYLADNFLAFWFR 300
+I D + + YL N+LE +RE EKP RG+ Y + ++F FWFR
Sbjct: 120 RFGQIADAARIETKSLGKYL-NVLEEMGYIRE----EKPIVGRGKTVYKINEHFFNFWFR 174
Query: 301 YIYPNLSRIEEGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLN------INFTKIGRWWH 354
+++P S IE G +EEI+ +++ YLG VFE+++RQFL+++N FTKIGRWW+
Sbjct: 175 FVFPRRSEIEMGFDVVEEIKKEFNNYLGPVFEEISRQFLIEMNKRKKLPFRFTKIGRWWY 234
Query: 355 KDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWEKSYGLIAR 414
K +EID+VALNE K LF EVKWK L+ KEA KIL++L++K +LTGL DW K+YG+IA+
Sbjct: 235 KGEEIDLVALNEDEKKALFIEVKWKNLERKEAYKILKDLKRKAELTGLHDWNKAYGIIAK 294
Query: 415 NIEGKENLKGKGYLVWDLRDFNLV 438
+I KE L+ +G+L WDLRDF L+
Sbjct: 295 SIMEKEELREEGFLAWDLRDFELI 318
>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
>gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 472
Score = 257 bits (650), Expect = 2e-67
Identities = 165/464 (35%), Positives = 257/464 (54%), Gaps = 31/464 (6%)
Query: 4 ETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDN---LRH 60
+ E+ELK + E + + +V+YGRRRVGKT L+ E +KG +Y E D L
Sbjct: 12 DRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLLED 71
Query: 61 FRETAERVFPEV--KYVREDWESILHALK---------GKIIIIDEFPNLIKEDPKVVSL 109
F E YVR + S+ + +II+DEF N P + S
Sbjct: 72 FTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSLFSS 131
Query: 110 FQRAIDLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFP 169
Q+ DL+ +SN +I +GS V ++ + +K PL+GR +KLKP +F+ F
Sbjct: 132 LQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYNFV- 190
Query: 170 EASWEELVEIYGFTDGIPYYIIQVKLPF----WEWLEKELLSPLSFFKDEVDFLLKYEFT 225
+ VEI+ G+P Y++ ++ + E L LS ++E +LK EF
Sbjct: 191 NIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREEGFNVLKLEFG 250
Query: 226 E-TRVYRRILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLL-ETDLVVREVPITEKP-Y 282
R Y ILEA++LG T KEI D TG++ + YL L + + +EVP TE P
Sbjct: 251 RYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATEDPRK 310
Query: 283 SKRGRYYLADNFLAFWFRYIYPNLSRIEEG--TFSIEEIRGDYSQYLGWVFEKVARQFLL 340
+++ Y++ D F FWFR++Y N+ +EEG T + ++R ++ ++G +E++ R+F+
Sbjct: 311 TRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGREFIR 370
Query: 341 KLNINFT--KIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGK 398
++++ F+ ++GRWWHK +EID++A NE K LF EVKW L + A+++LR+LE+KG+
Sbjct: 371 RIDLGFSPLRVGRWWHKGEEIDVIAYNEE-KVALF-EVKWSDLSKARAKRLLRDLERKGE 428
Query: 399 LTGLDDWEKSYGLIARNIEGKENLKGKGYLVWDLRDFNLVYRQP 442
L L E+ YGLI+R +EGKE L+ GYLV+DL D +VY P
Sbjct: 429 LVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND--IVYIPP 469
>pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii
>gi|3257252|dbj|BAA29935.1| (AP000003) 323aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 323
Score = 250 bits (631), Expect = 3e-65
Identities = 137/320 (42%), Positives = 191/320 (58%), Gaps = 13/320 (4%)
Query: 125 IILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVEIYGFTD 184
++L GS + I+ + VLS SPLYGRRT +L+ L F FF E ++ Y
Sbjct: 2 LVLSGSLMGIMEDNVLSHSSPLYGRRTAGFRLRSLGLFPSLRFFKSPI--EGLKFYMLLG 59
Query: 185 GIPYYIIQVKL--PFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIALGKT 242
GIP Y+I E++E+E L+P +F DE +++ E E + Y IL A++ G+
Sbjct: 60 GIPAYLIIASRYETVGEFVEREFLTPEGYFYDE-PYIVLSELKELKTYFSILSAMSSGRR 118
Query: 243 TIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLADNFLAFWFRYI 302
EI G+ I PYL L+ V RE+PI K KRG Y ++D L WF I
Sbjct: 119 RPSEIASEVGLEGRKIYPYLETLIRLGFVERELPIARK--EKRGLYRISDPMLMSWFSLI 176
Query: 303 YPNLSRIEEGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLN------INFTKIGRWWHKD 356
YPN + IE GT ++E + + + FE V+R+FL+++N FTKIGRWW+K
Sbjct: 177 YPNRTEIELGTITLERVEKILQRIFSFRFEDVSREFLVEMNKAGKLPFRFTKIGRWWYKG 236
Query: 357 KEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWEKSYGLIARNI 416
+EID+VALNE + LF EVKWK LKE+E + IL++LEKK L GLD W+K+YGLI ++I
Sbjct: 237 EEIDLVALNEDEEKALFIEVKWKDLKEREVKGILKDLEKKAGLVGLDGWDKNYGLIEKSI 296
Query: 417 EGKENLKGKGYLVWDLRDFN 436
E KE L+ + YLVWDL+DF+
Sbjct: 297 ERKEKLREENYLVWDLKDFD 316
>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
>gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 456
Score = 238 bits (600), Expect = 1e-61
Identities = 159/428 (37%), Positives = 230/428 (53%), Gaps = 34/428 (7%)
Query: 24 IVIYGRRRVGKTRLILEAVKG---FPHVYYLAVESDNLRHFRETAERVFPEV---KYVRE 77
+V+YGRRRVGKTRL+ E K F + A++ ++ F++T + K
Sbjct: 24 VVLYGRRRVGKTRLLKEFSKDKRTFFFTFPEAIKEVQMKEFKKTMAEFLGDDFARKLETR 83
Query: 78 DWESILHALKGKI----IIIDEFPNLIKEDPKVVSLFQRAIDLELSNSNTKIILLGSSVS 133
DW +L L K+ I++DEF IK + K++S QR D LS +++ GS +
Sbjct: 84 DWLDLLRYLAEKVDDCLIVLDEFTYAIKSERKILSDLQRTWDDILSEKKVMLVISGSLLG 143
Query: 134 IITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVEIYGFTDGIPYYIIQV 193
++ + VLS SPLYGRRT SM LKP ++ +FF + + + +Y GIP Y+
Sbjct: 144 MMWDDVLSYASPLYGRRTRSMNLKPFDYPNALKFFSDPEFG--IRVYMLVGGIPSYL--- 198
Query: 194 KL-----PFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIALGKTTIKEIK 248
KL E++ +E LS FF DE LL E E + Y IL AIA G ++ I
Sbjct: 199 KLAGRYNTVEEFIREEFLSDYGFFYDEPYVLLGEELRELKTYFSILRAIAEGNRRLERIA 258
Query: 249 DFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLADNFLAFWFRYIYPNLSR 308
+F G+ + PY+ L+ LV RE PI K Y + D L WF YP ++
Sbjct: 259 NFIGLPMRSVYPYVDTLVRLGLVERESPILGS--RKVSLYRIKDPMLLTWFTLTYPQMAE 316
Query: 309 IEEGTFSIEEIRGDYSQYLGWVFEKVARQFL-LKLNINFTKIGRWWHKDKEIDIVALNER 367
I GT ++ + YS FE++A++FL L I F +GRWW++ +EIDIVAL R
Sbjct: 317 ISSGTAKLDSLYKVYSIR----FEELAKEFLTLFRPIEFETLGRWWYRGEEIDIVAL--R 370
Query: 368 GKGVLFAEVKWKKLKEKEAEKILRELEKKG-KLTGLDDWEKSYGLIARNIEGKENLKGKG 426
EVKWK L ++ A ++LRELE+K KL ++ + GLIA+++ GKE L+ +G
Sbjct: 371 KDKTTLIEVKWKDLSKRSALRVLRELEEKSEKLHPIE----NIGLIAKSVRGKEKLREEG 426
Query: 427 YLVWDLRD 434
YLVWDL D
Sbjct: 427 YLVWDLED 434
>pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (strain Orsay)
>gi|5458553|emb|CAB50041.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 243
Score = 221 bits (558), Expect = 1e-56
Identities = 112/238 (47%), Positives = 154/238 (64%), Gaps = 10/238 (4%)
Query: 206 LSPLSFFKDEVDFLLKYEFTETRVYRRILEAIALGKTTIKEIKDFTGMRHSDITPYLRNL 265
++P SF E LL+ EF E Y +LEA+A KT + EI + + + YLR L
Sbjct: 1 MTPNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRIL 60
Query: 266 LETDLVVREVPITEKPYSKRGRYYLADNFLAFWFRYIYPNLSRIEEGTF--SIEEIRGDY 323
+ D++ RE+PI +K +K+G Y D + AFWFR++ P IE G ++E+ +
Sbjct: 61 EDLDILKRELPIGKK--AKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGF 118
Query: 324 SQYLGWVFEKVARQFLL------KLNINFTKIGRWWHKDKEIDIVALNERGKGVLFAEVK 377
SQYLG FE++ RQFL+ KL +FTKIGRWWHK +EIDIVALNER K VL EVK
Sbjct: 119 SQYLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVK 178
Query: 378 WKKLKEKEAEKILRELEKKGKLTGLDDWEKSYGLIARNIEGKENLKGKGYLVWDLRDF 435
WK+L+++EA ILR+LE+K K L+ WEKSY L+A+ +EGK +LK +G+ +WDL DF
Sbjct: 179 WKELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
Length = 350
Score = 202 bits (508), Expect = 8e-51
Identities = 134/344 (38%), Positives = 195/344 (55%), Gaps = 32/344 (9%)
Query: 7 KELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDNLRHFRETAE 66
+EL+ +R L EK LI++YGRRRVGKTRLI+EA+K PHVY+L E + RET
Sbjct: 19 EELEKLRAYL--EKRSLIIVYGRRRVGKTRLIIEALKDTPHVYHLCKEEEP----RETLV 72
Query: 67 RVFPEVKYVREDWESI---------LHALKGKI---IIIDEFPNLIKEDPKVVSLFQRAI 114
+ ++ + D + + L L G I +++DEFP L+K P+++ L Q
Sbjct: 73 SLSKKLYHATGDAQFLESPPSSFDELFELLGGIGITLVLDEFPLLVKNYPRILGLLQEYW 132
Query: 115 DLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWE 174
D S ++L GSSVS++ + + SP++GRRT S+K+KPLEF + EFFP S E
Sbjct: 133 DFGEGGS---VVLCGSSVSMM-KGLTDYGSPIHGRRTISVKVKPLEFRHVGEFFPGYSPE 188
Query: 175 ELVEIYGFTDGIPYYIIQVKLPFWEWLEKELLSPL---SFFKDEVDFLLKYEFTETRVYR 231
ELV YG DGIP Y+++ + +E+ ++ + +E + LL+YE + Y
Sbjct: 189 ELVRAYGVLDGIPEYLLRFDPS--QSVEENVIREFFGRGYLYEEAELLLRYELRDLSTYN 246
Query: 232 RILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPI---TEKPYSKRGRY 288
ILEAIA G T+ EIK TGM S ++ YL L E +LV RE P+ K K RY
Sbjct: 247 TILEAIAAGYTSFNEIKTKTGMDGSKLSRYLSTLEELELVKREYPVLPGAAKRRRKGARY 306
Query: 289 YLADNFLAFWFRYIYPNLSRIEEGTFSI--EEIRGDYSQYLGWV 330
L+DN+ AF++ ++YP IE G + E R +++YLG V
Sbjct: 307 GLSDNYFAFYYSFVYPFKEEIELGLLDVPLENFRRKFNRYLGRV 350
>pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (strain Orsay)
>gi|5458874|emb|CAB50361.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 157
Score = 153 bits (383), Expect = 4e-36
Identities = 70/149 (46%), Positives = 102/149 (67%), Gaps = 5/149 (3%)
Query: 292 DNFLAFWFRYIYPNLSRIEEGTFSI--EEIRGDYSQYLGWVFEKVARQ---FLLKLNINF 346
DN+ AFWFRY+ PN +E G E + D++ YLG +FEK+ R FL +F
Sbjct: 4 DNYFAFWFRYVLPNKVYLEAGLAEDVWERSKDDFNIYLGLIFEKLVRNPEVFLRLTGFHF 63
Query: 347 TKIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWE 406
TK+GRWW + +E++++ALNER K L EVKWK+L ++EA+ ILR+L +K +L GLD W+
Sbjct: 64 TKLGRWWRRGEEVNVLALNEREKKALLIEVKWKELSKREAKGILRDLGRKAELVGLDSWK 123
Query: 407 KSYGLIARNIEGKENLKGKGYLVWDLRDF 435
+ YG++A+ I+ E L+ +G+L WDLRDF
Sbjct: 124 RFYGVVAKKIDDMEELREEGWLAWDLRDF 152
>pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (strain Orsay)
>gi|5458875|emb|CAB50362.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 215
Score = 145 bits (363), Expect = 8e-34
Identities = 84/201 (41%), Positives = 125/201 (61%), Gaps = 4/201 (1%)
Query: 90 IIIIDEFPNLIKEDPKVVSLFQRAIDLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGR 149
++IIDEFP L++ V+SL Q+A DL+LS +N +I+ GSSVS++ ++L+ KSPLYGR
Sbjct: 13 VLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLYGR 72
Query: 150 RTGSMKLKPLEFFALKEFFPEASWEELVEIYGFTDGIPYYIIQV--KLPFWEWLEKELLS 207
RTG +L + FF + EF P + E+L++++G T IP Y++Q F E + + +L
Sbjct: 73 RTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERVLF 132
Query: 208 PLSFFKDEVDFLLKYEFTETRVYRRILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLE 267
+F +E +FLL+ E E Y IL+AIA G+ EI + TG+ S ++ YL L
Sbjct: 133 KGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVLQR 192
Query: 268 TDLVVREVPITE--KPYSKRG 286
+V REVP+T K SKRG
Sbjct: 193 LGIVKREVPVTATMKEVSKRG 213
>pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii
>gi|3257255|dbj|BAA29938.1| (AP000003) 103aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 103
Score = 97.9 bits (240), Expect = 2e-19
Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 5/104 (4%)
Query: 287 RYYLADNFLAFWFRYIYPNLSRIEEGTF--SIEEIRGDYSQYLGWVFEKVARQFLLKLNI 344
RY +ADN+ AFWFR++YPN +E + ++E ++ DY+ Y+G VFEK + FL K
Sbjct: 2 RYEIADNYYAFWFRFVYPNRKLVERELYKEALELVKRDYNHYMGRVFEKASLDFLWK-RF 60
Query: 345 NFTKIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEK 388
F + GRWW +++EID+V + +RG F EVKWK L E+EA +
Sbjct: 61 AFERAGRWWSREEEIDVVGV-KRGMAYFF-EVKWKDLSEREARR 102
>sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir||A64353 hypothetical
protein MJ0425 - Methanococcus jannaschii
>gi|1591128|gb|AAB98412.1| (U67494) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 140
Score = 83.9 bits (204), Expect = 4e-15
Identities = 53/127 (41%), Positives = 78/127 (60%), Gaps = 9/127 (7%)
Query: 302 IYPNLSRIEEGTFS--IEEIRGDYSQYLGWVFEKVARQFLLKLNINFTK--IGRWWHKDK 357
+YPN++ +E G +I ++Y G +FE + + L I+F + + +WWHK +
Sbjct: 5 VYPNMADLEIGNVKEVYNKILASLNEYYGKMFENLVFEMLKLKIIDFGQKSVAKWWHKGE 64
Query: 358 EIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLD-DWEKSYGLIARNI 416
EID++A N K + F EVKWK L KEA+ ILR+LE+ KL +D D EK +IA++I
Sbjct: 65 EIDVLAYNNN-KMIAF-EVKWKDLSFKEAKGILRDLER--KLDKVDFDGEKECYIIAKSI 120
Query: 417 EGKENLK 423
EGKE LK
Sbjct: 121 EGKEKLK 127
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.142 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170576831
Number of Sequences: 2977
Number of extensions: 7546842
Number of successful extensions: 22126
Number of sequences better than 1.0e-10: 22
Number of HSP's better than 0.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 22025
Number of HSP's gapped (non-prelim): 23
length of query: 451
length of database: 189,106,746
effective HSP length: 54
effective length of query: 397
effective length of database: 156,788,448
effective search space: 62245013856
effective search space used: 62245013856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)