BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0572 811885 812349 155 !not a gene!
         (155 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71073 hypothetical protein PH1276 - Pyrococcus horikoshii ...   153  7e-37
pir||H72731 hypothetical protein APE0393 - Aeropyrum pernix (str...    76  2e-13

>pir||A71073 hypothetical protein PH1276 - Pyrococcus horikoshii
           >gi|3257696|dbj|BAA30379.1| (AP000005) 109aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 109
           
 Score =  153 bits (384), Expect = 7e-37
 Identities = 78/106 (73%), Positives = 87/106 (81%)

Query: 50  INTSAPFRASSGPPSIPSSFVFSNSHPLYGKSFSRSRSLVRTIGFPFTSSTTLTFPGLTP 109
           ++TSA  RAS GPPS+ S FVF +SHPLYG +FS+SRSLVR +GFP TSSTTLTF GLTP
Sbjct: 1   MSTSASLRASWGPPSMFSPFVFLSSHPLYGNNFSKSRSLVRILGFPLTSSTTLTFSGLTP 60

Query: 110 AFTSILSVANPAAPAPNKATLISSSLFPTTSRAFIRPARTTAAVPC 155
           A  SILSVANPAAPAPN A++IS   FPTT RAF  PARTTAAVPC
Sbjct: 61  ASVSILSVANPAAPAPNNASVISLIFFPTTLRAFKSPARTTAAVPC 106


>pir||H72731 hypothetical protein APE0393 - Aeropyrum pernix (strain K1)
           >gi|5104032|dbj|BAA79348.1| (AP000059) 172aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 172
           
 Score = 76.1 bits (184), Expect = 2e-13
 Identities = 58/117 (49%), Positives = 68/117 (57%), Gaps = 14/117 (11%)

Query: 1   MATILAPAFLASSGNISGTGFANGKTIGSSLISLIHSGFITPGPGLVNDINTSAPFRAS- 59
           +AT LAPA LAS G+ISG GFA+  T+GS  + LIHS   TPGPGL      SAP RAS 
Sbjct: 62  VATTLAPASLASHGHISGVGFASANTMGSLDMPLIHSFLTTPGPGLEAATRASAPLRASS 121

Query: 60  ------SGPPSIPSSFVFSNSHPLYGKSFS-RSRSLVRTIGFPFTSSTTLTFPGLTP 109
                 S PPS+  S   S  + L  +S S  SRS  RT   P  S+TT+ F GLTP
Sbjct: 122 KLLPGASPPPSV--SRAISYLYLLEKRSLSISSRSGWRT---PLLSTTTM-FLGLTP 172


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.131    0.379 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59046306
Number of Sequences: 2977
Number of extensions: 2505093
Number of successful extensions: 9042
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9040
Number of HSP's gapped (non-prelim): 2
length of query: 155
length of database: 189,106,746
effective HSP length: 56
effective length of query: 99
effective length of database: 155,591,474
effective search space: 15403555926
effective search space used: 15403555926
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)