BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0574 817787 818431 215 !not a gene!
         (215 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71073 hypothetical protein PH1279 - Pyrococcus horikoshii ...   284  4e-76
pir||H72504 hypothetical protein APE2014 - Aeropyrum pernix (str...    76  3e-13
pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (str...    70  2e-11

>pir||D71073 hypothetical protein PH1279 - Pyrococcus horikoshii
           >gi|3257699|dbj|BAA30382.1| (AP000005) 189aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 189
           
 Score =  284 bits (720), Expect = 4e-76
 Identities = 147/187 (78%), Positives = 157/187 (83%)

Query: 1   MASSKSQGAFVAVRTMTLSFLSLNPSISASNVPIILLAASSRLTLFIVKESTSSMKITLG 60
           MASS+SQG FVAV T+T   LSLNPSISA+NVPIILLAASSRL LF+V+ESTSS+ ITLG
Sbjct: 1   MASSRSQGVFVAVSTITFLLLSLNPSISANNVPIILLAASSRLDLFMVRESTSSINITLG 60

Query: 61  LSCLASENNADISFEDSPKYLLSKSLAFTLKKVAFKLFATALASKLFPVPGGPKRSIPWG 120
           LSCLA E  A+ +FEDSPKYLL +SLAFTLK VAFKLFA ALASKLFPVPGGP RSIPWG
Sbjct: 61  LSCLAKEKRAETNFEDSPKYLLRRSLAFTLKNVAFKLFAVALASKLFPVPGGPNRSIPWG 120

Query: 121 GSIGDFAMLNPMAWAINFLASLRPPMSFHVIVLLFMRAFNLSKYSFFPSLRFLTFLAFSS 180
           GSIGDFAMLNP A AINFLAS  PPMSF V VL F+R FNLSKYSF  S  FL FLA SS
Sbjct: 121 GSIGDFAMLNPTACAINFLASFNPPMSFQVTVLFFIRTFNLSKYSFLASFFFLIFLALSS 180

Query: 181 HFLASSR 187
           HF ASSR
Sbjct: 181 HFFASSR 187


>pir||H72504 hypothetical protein APE2014 - Aeropyrum pernix (strain K1)
           >gi|5105712|dbj|BAA81024.1| (AP000063) 280aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 280
           
 Score = 76.1 bits (184), Expect = 3e-13
 Identities = 67/177 (37%), Positives = 84/177 (46%), Gaps = 11/177 (6%)

Query: 2   ASSKSQGAFVAVRTMTLSFLSLNPSISASNVPIILLAASSRL----TLFIVKESTSSMKI 57
           A S      VA  T TLS  S  PS SA +  ++L  + S L    TL     S SSM  
Sbjct: 48  AGSMRSSLLVAAMTFTLSRGS-KPSSSARSWSMVLCTSLSPLVPMSTLLDAMASISSMNS 106

Query: 58  TLGLSCLASENNADISFEDSPKYLLSKSLAFTLKKVAFKLFATALASKLFPVPGGPKRSI 117
             G   LAS N +  S   SP  LL+ SL  TL  VA    ATALA ++FPVPGGP    
Sbjct: 107 IEGAFSLASLNISLTSLAPSPMNLLTSSLPTTLMNVASVSPATALARRVFPVPGGPWSRT 166

Query: 118 PWGGSIGD------FAMLNPMAWAINFLASLRPPMSFHVIVLLFMRAFNLSKYSFFP 168
           P GGSI        F + +  A  I+ + S RPP S    + L   +  L++ S+ P
Sbjct: 167 PLGGSIPSSLKRWGFFIGSTTASYISLICSSRPPTSLKNTLGLSSTSIALTRGSYLP 223


>pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (strain K1)
           >gi|5106180|dbj|BAA81491.1| (AP000064) 353aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 353
           
 Score = 69.9 bits (168), Expect = 2e-11
 Identities = 62/160 (38%), Positives = 79/160 (48%), Gaps = 15/160 (9%)

Query: 2   ASSKSQGAFVAVRTMTLSFLSLNPSISASN----VPIILLAASSRLTLFIVKESTSSMKI 57
           A S   G  VA  T T S+ S  PSIS S+    + + L+  S  LT  +   S SS   
Sbjct: 3   AGSTMSGLLVAAITTT-SWRSETPSISVSSWLTILSVTLVPTSVPLTGAMA--SISSKNT 59

Query: 58  TLGLSCLASENNADISFEDSPKYLLSKSLAFTLKKVAFKLFATALASKLFPVPGGPKRSI 117
           T G  CLA  N + I+   SP +LLS S   T  K A    ATALAS + PVPGGP +  
Sbjct: 60  TAGACCLAFANISLIALSLSPTHLLSISGPLTAMKFAPLSVATALASSVLPVPGGPNKRT 119

Query: 118 PWGGSI-------GDFAMLNPMAWAINFLASLRPPMSFHV 150
           P GG I       G F   +  + +  F +S RPP+S H+
Sbjct: 120 PLGGLIPILVNASGCFRGHSTTSLSSCFTSS-RPPISLHL 158


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.134    0.380 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65711551
Number of Sequences: 2977
Number of extensions: 2359341
Number of successful extensions: 6397
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6393
Number of HSP's gapped (non-prelim): 5
length of query: 215
length of database: 189,106,746
effective HSP length: 57
effective length of query: 158
effective length of database: 154,992,987
effective search space: 24488891946
effective search space used: 24488891946
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 163 (67.9 bits)