BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0581 (PAB0581) DE:Hypothetical protein
(474 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75133 hypothetical protein PAB0581 - Pyrococcus abyssi (st... 953 0.0
pir||E71074 hypothetical protein PH1288 - Pyrococcus horikoshii ... 685 0.0
pir||E72579 hypothetical protein APE1917 - Aeropyrum pernix (str... 327 1e-88
gb|AAK42848.1| Deacetylase, putative [Sulfolobus solfataricus] 82 2e-14
pir||A70578 probable dapE2 protein - Mycobacterium tuberculosis ... 75 2e-12
gb|AAK41276.1| Acetylornithine deacetylase (argE-2) [Sulfolobus ... 73 5e-12
pir||B82973 probable peptidic bond hydrolase PA5390 [imported] -... 73 5e-12
emb|CAB95019.1| (AJ252021) acetylornithinase (n2-acetyl-l-ornith... 73 7e-12
emb|CAA08876.1| (AJ009834) DapE [Bordetella pertussis] 72 2e-11
pir||E75324 ArgE/DapE/Acy1 family protein - Deinococcus radiodur... 72 2e-11
gb|AAK41759.1| Succinyl-diaminopimelate desuccinylase (dapE) [Su... 70 5e-11
emb|CAC12063.1| (AL445066) acetylornithine deacetylase related p... 70 6e-11
sp|P44514|DAPE_HAEIN SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE (SDA... 69 8e-11
>pir||F75133 hypothetical protein PAB0581 - Pyrococcus abyssi (strain Orsay)
>gi|5458294|emb|CAB49783.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 474
Score = 953 bits (2437), Expect = 0.0
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MKTKGLELAKIQFLALDVQYRTLLDKLKTSQVNHNQVGGMDVVSLLSELVSFETVNDPVK 60
MKTKGLELAKIQFLALDVQYRTLLDKLKTSQVNHNQVGGMDVVSLLSELVSFETVNDPVK
Sbjct: 1 MKTKGLELAKIQFLALDVQYRTLLDKLKTSQVNHNQVGGMDVVSLLSELVSFETVNDPVK 60
Query: 61 GMKPSKDCPKFIKDTLDSWGIESEIIEKDGYYAVYGEIGDGSPKVLFMAHFDVVPVNPEE 120
GMKPSKDCPKFIKDTLDSWGIESEIIEKDGYYAVYGEIGDGSPKVLFMAHFDVVPVNPEE
Sbjct: 61 GMKPSKDCPKFIKDTLDSWGIESEIIEKDGYYAVYGEIGDGSPKVLFMAHFDVVPVNPEE 120
Query: 121 WKTDPFKLTIEGDRAYGRGSADDKGNVASLMLALRDLVNEKLDGKVIFAFTGDEEIGGNM 180
WKTDPFKLTIEGDRAYGRGSADDKGNVASLMLALRDLVNEKLDGKVIFAFTGDEEIGGNM
Sbjct: 121 WKTDPFKLTIEGDRAYGRGSADDKGNVASLMLALRDLVNEKLDGKVIFAFTGDEEIGGNM 180
Query: 181 AMHIAEKLRDEGKLPTYMVNADGIGMKPIIRRRKGFSVEIRVKPEKTKAKGIVRERKFYV 240
AMHIAEKLRDEGKLPTYMVNADGIGMKPIIRRRKGFSVEIRVKPEKTKAKGIVRERKFYV
Sbjct: 181 AMHIAEKLRDEGKLPTYMVNADGIGMKPIIRRRKGFSVEIRVKPEKTKAKGIVRERKFYV 240
Query: 241 KTPVVETRHAAYFLPGVDTHPMIALSQFVRNFNVLAISLEGKFLKGNVVPSEVTLRYLDL 300
KTPVVETRHAAYFLPGVDTHPMIALSQFVRNFNVLAISLEGKFLKGNVVPSEVTLRYLDL
Sbjct: 241 KTPVVETRHAAYFLPGVDTHPMIALSQFVRNFNVLAISLEGKFLKGNVVPSEVTLRYLDL 300
Query: 301 GEGQEVEVDLGLTRLLRSIVPLVRAPIKPEKYSDYGVSITPNVYSFEGHHVIKLDIRAMS 360
GEGQEVEVDLGLTRLLRSIVPLVRAPIKPEKYSDYGVSITPNVYSFEGHHVIKLDIRAMS
Sbjct: 301 GEGQEVEVDLGLTRLLRSIVPLVRAPIKPEKYSDYGVSITPNVYSFEGHHVIKLDIRAMS 360
Query: 361 NSKEEIERTIQEIVEFNVPEAEVDIRTNEKAGYLFTDPQDRIVRVTIDILRELGEDAEPM 420
NSKEEIERTIQEIVEFNVPEAEVDIRTNEKAGYLFTDPQDRIVRVTIDILRELGEDAEPM
Sbjct: 361 NSKEEIERTIQEIVEFNVPEAEVDIRTNEKAGYLFTDPQDRIVRVTIDILRELGEDAEPM 420
Query: 421 EGPGASDSRYFTPYGVKAIDIGPKGGNIHGPNEYVEINSLKKMPMLYKRLAMEL 474
EGPGASDSRYFTPYGVKAIDIGPKGGNIHGPNEYVEINSLKKMPMLYKRLAMEL
Sbjct: 421 EGPGASDSRYFTPYGVKAIDIGPKGGNIHGPNEYVEINSLKKMPMLYKRLAMEL 474
>pir||E71074 hypothetical protein PH1288 - Pyrococcus horikoshii
>gi|3257708|dbj|BAA30391.1| (AP000005) 455aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 455
Score = 685 bits (1748), Expect = 0.0
Identities = 326/439 (74%), Positives = 389/439 (88%), Gaps = 1/439 (0%)
Query: 37 VGGMDVVSLLSELVSFETVNDPVKGMKPSKDCPKFIKDTLDSWGIESEIIEKDGYYAVYG 96
V MDV+ LLSELVSF TVNDP KG+KPSK+CP+FIKD LDSW IESEIIE+ GYYAVYG
Sbjct: 15 VKSMDVLELLSELVSFNTVNDPNKGIKPSKECPRFIKDQLDSWDIESEIIERSGYYAVYG 74
Query: 97 EIGDGSPKVLFMAHFDVVPVNPEEWKTDPFKLTIEGDRAYGRGSADDKGNVASLMLALRD 156
EIGDG+P++LFMAHFDVVPVN EEW+TDPF+LTI+ ++AYGRGSADDKGNVA++MLAL++
Sbjct: 75 EIGDGTPRLLFMAHFDVVPVNLEEWETDPFELTIKENKAYGRGSADDKGNVAAVMLALKE 134
Query: 157 LVNE-KLDGKVIFAFTGDEEIGGNMAMHIAEKLRDEGKLPTYMVNADGIGMKPIIRRRKG 215
L E KL+G+VIFAFTGDEEIGG MAMHIAEKL EGK+P YM+NADGIGMKPIIRRRKG
Sbjct: 135 LSKEEKLNGRVIFAFTGDEEIGGAMAMHIAEKLSKEGKVPKYMINADGIGMKPIIRRRKG 194
Query: 216 FSVEIRVKPEKTKAKGIVRERKFYVKTPVVETRHAAYFLPGVDTHPMIALSQFVRNFNVL 275
F VEI+V P K K KG VRE +F KTPVVETRHAAYFLPGVDTHPM+ALS F+RN N +
Sbjct: 195 FGVEIKVYPRKVKVKGRVREIEFEPKTPVVETRHAAYFLPGVDTHPMVALSHFLRNSNAV 254
Query: 276 AISLEGKFLKGNVVPSEVTLRYLDLGEGQEVEVDLGLTRLLRSIVPLVRAPIKPEKYSDY 335
AISL+G F+KGNV+P +V L+Y++ GEG+EVE DL LT LL++IVP+VRAPIK EKYSDY
Sbjct: 255 AISLDGAFIKGNVIPGKVKLKYVEPGEGEEVEGDLSLTALLKAIVPIVRAPIKAEKYSDY 314
Query: 336 GVSITPNVYSFEGHHVIKLDIRAMSNSKEEIERTIQEIVEFNVPEAEVDIRTNEKAGYLF 395
GVSITPNVYSF+G HV+K+D+RAMS SK++IE+T++E++ FN+PEAE+ I+ NEKAGYLF
Sbjct: 315 GVSITPNVYSFDGSHVLKVDVRAMSYSKDDIEKTLREVLNFNLPEAELIIKENEKAGYLF 374
Query: 396 TDPQDRIVRVTIDILRELGEDAEPMEGPGASDSRYFTPYGVKAIDIGPKGGNIHGPNEYV 455
T P D +VRVT+ IL+ELGED EP+EGPGASDSRYFTP GVKAIDIGP+GGNIHGPNEYV
Sbjct: 375 TSPDDELVRVTLRILKELGEDVEPIEGPGASDSRYFTPLGVKAIDIGPRGGNIHGPNEYV 434
Query: 456 EINSLKKMPMLYKRLAMEL 474
E++SL+KMP +Y+R+A+ L
Sbjct: 435 EVDSLRKMPEIYRRIALSL 453
>pir||E72579 hypothetical protein APE1917 - Aeropyrum pernix (strain K1)
>gi|5105609|dbj|BAA80922.1| (AP000062) 441aa long
hypothetical protein [Aeropyrum pernix]
Length = 441
Score = 327 bits (830), Expect = 1e-88
Identities = 188/438 (42%), Positives = 259/438 (58%), Gaps = 7/438 (1%)
Query: 42 VVSLLSELVSFETVNDPVKG-MKPSKDCPKFIKDTLDSWGIESEIIEKDGYYAVYGEIGD 100
VV LS LV E+VNDP G + + + + + G++ E++E +G + G
Sbjct: 4 VVEFLSSLVEVESVNDPSAGRLVGVGEAEEVRRAVREHAGLDMELVENEGVPILLYMAGS 63
Query: 101 GSPKVLFMAHFDVVPVNPEEWKTDPFKLTIEGDRAYGRGSADDKGNVASLMLALRDLVNE 160
G P LFMAHFDVVP P T+PFK ++G R YGRG+ADDK NVA++ LAL E
Sbjct: 64 GRPVTLFMAHFDVVPPGPGWRVTEPFKPVVKGGRLYGRGAADDKSNVAAISLALSGF--E 121
Query: 161 KLDGKVIFAFTGDEEIGGNM-AMHIAEKLRDEGKLPTYMVNADGIGMKPIIRRRKGFSVE 219
G VI AFTGDEEIGG A +A +LR EG P Y+VN DG I RRR F+
Sbjct: 122 PGRGTVIIAFTGDEEIGGERGAGWLAGRLRSEGLWPDYVVNGDGSMGAVITRRRNVFNAI 181
Query: 220 IRVKPEKTKAKGIVRE-RKFYVKTPVVETRHAAYFLPGVDTHPMIALSQFVRNFNVLAIS 278
+RV+ E+ A+G+ R + ++ TRHAAYF+PGVD+HP++ + VR +LA S
Sbjct: 182 VRVRAERADAEGVSRRVMRLGLEVRGRPTRHAAYFIPGVDSHPLLTAAALVREAGLLASS 241
Query: 279 LEGKFLKGNVVPSEVTLRYLDLGEGQEVEVDLGLTRLLRSIVPLVRAPIKPEKYSDYGVS 338
L G+++K NV+P+ V L L+ G G D GLT LL+S++PL R YSDYGV+
Sbjct: 242 LSGEWVKSNVLPASVELEALEPGGGGHGVYDPGLTALLKSLIPLSRITPGRLLYSDYGVT 301
Query: 339 ITPNVYSF-EGHHVIKLDIRAMSNSKEEIERTIQEIVEFNV-PEAEVDIRTNEKAGYLFT 396
TPNVY EG H + +D+RAM+ ++ + +E ++ E + R GYL+T
Sbjct: 302 ATPNVYRLAEGWHEVIVDVRAMTGDPAAVDEAVARSLEESLGSRVEWEYRVTGGGGYLYT 361
Query: 397 DPQDRIVRVTIDILRELGEDAEPMEGPGASDSRYFTPYGVKAIDIGPKGGNIHGPNEYVE 456
+V++ + + + LG EP E GASDSRYF+P G +AID GP GGN+HGP+EYVE
Sbjct: 362 PSSAELVKLALRVNQSLGLPGEPREAAGASDSRYFSPRGSQAIDYGPLGGNVHGPDEYVE 421
Query: 457 INSLKKMPMLYKRLAMEL 474
I L+ Y+R+A L
Sbjct: 422 IRQLEAAVEFYRRVAEAL 439
>gb|AAK42848.1| Deacetylase, putative [Sulfolobus solfataricus]
Length = 437
Score = 81.5 bits (198), Expect = 2e-14
Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 6/142 (4%)
Query: 71 FIKDTLDSW-GIESEIIEKDGYYAVYGEIGDGSPKVLFMA-HFDVVPVNP-EEWKTDPFK 127
++K+T++ G+++ + + G+ VY EI + K L + H+DV PV+P EWK PF
Sbjct: 30 YLKETVEKLLGVKANLEKTKGHPVVYAEINVNAKKTLLIYNHYDVQPVDPISEWKRAPFS 89
Query: 128 LTIEGDRAYGRGSADDKGNVASLMLALRDLVNE-KLDGKVIFAFTGDEEIGGNMAMHIAE 186
TIE DR Y RG++D+KG + + + A++ L+++ +L+ V + G+EEIG E
Sbjct: 90 ATIENDRIYARGASDNKGTLMARLFAIKHLLDKNELNVNVKLLYEGEEEIGSVNLEDYIE 149
Query: 187 KLRDEGKLPTYMVNADGIGMKP 208
K + KL V +G G+ P
Sbjct: 150 K--NTNKLKADSVIMEGAGLDP 169
>pir||A70578 probable dapE2 protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2104337|emb|CAB08652.1| (Z95388) dapE2
[Mycobacterium tuberculosis]
Length = 448
Score = 74.5 bits (180), Expect = 2e-12
Identities = 45/151 (29%), Positives = 67/151 (43%), Gaps = 8/151 (5%)
Query: 41 DVVSLLSELVSFETVNDPVKGM-KPSKDCPKFIKDTLDSWGIESEIIE-----KDGYYAV 94
DV ++S L+ F+T N G K +C +++ + L G + E +E + +A
Sbjct: 14 DVAQVVSRLIRFDTTNSGEPGTTKGEAECARWVAEQLAEVGYQPEYVESGAPGRGNVFAR 73
Query: 95 YGEIGDGSPKVLFMAHFDVVPVNPEEWKTDPFKLTIEGDRAYGRGSADDKGNVASLMLAL 154
+L H DVVP P EW PF IE +GRG+ D K V +++
Sbjct: 74 LAGADSSRGALLIHGHLDVVPAEPAEWSVHPFSGAIEDGYVWGRGAVDMKDMVGMMIVVA 133
Query: 155 RDLVNEKL--DGKVIFAFTGDEEIGGNMAMH 183
R L + ++FAF DEE GG H
Sbjct: 134 RHLRQAAIVPPRDLVFAFVADEEHGGKYGSH 164
>gb|AAK41276.1| Acetylornithine deacetylase (argE-2) [Sulfolobus solfataricus]
Length = 376
Score = 73.4 bits (177), Expect = 5e-12
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 26/164 (15%)
Query: 43 VSLLSELVSFETVNDPVKGMKPSKDCPKFIKDTLDSWGIESEIIE-----KDGYYAVYGE 97
V LL +LV +T N P + ++KD + G + ++IE D YY +Y
Sbjct: 5 VKLLKDLVQIKTANPPGSEYE---SISFYLKDLFNDLGFQIQLIEIPEEYMDKYY-IYSP 60
Query: 98 IGDGSPKVLFMA------------HFDVVPVNPEEWKTDPFKLTIEGDRAYGRGSADDKG 145
G+ +++ +A H+DVVP + W T+PF+L + ++AYGRG++D KG
Sbjct: 61 SHKGNKRIIVIAKNSPNPILHFNFHYDVVPPG-DGWLTNPFELKVVDNKAYGRGTSDMKG 119
Query: 146 NVASLMLALRDLVNEKLDGKVIFAFTGDEEIGGNMAMHIAEKLR 189
++ SL LAL + D + F DEE GG ++ E++R
Sbjct: 120 SIVSLYLAL----SRFNDLPIEIVFVPDEESGGIGTKYLTEEIR 159
>pir||B82973 probable peptidic bond hydrolase PA5390 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951714|gb|AAG08775.1|AE004951_9 (AE004951) probable
peptidic bond hydrolase [Pseudomonas aeruginosa]
Length = 384
Score = 73.4 bits (177), Expect = 5e-12
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 12/183 (6%)
Query: 45 LLSELVSFETVNDPVKGMKPSKDCPKFIKDTLDSWGIESEII-----EKDGYYAVYGEIG 99
+L++LV+F+TV+ + + +++D L +G++SE+ K YA G
Sbjct: 7 ILADLVAFDTVS-----RESNLALIDYVRDYLAGFGVDSELFFDADGRKANLYATIGPSD 61
Query: 100 DGSPKVLFMAHFDVVPVNPEEWKTDPFKLTIEGDRAYGRGSADDKGNVASLMLALRDLVN 159
G V H DVVP + + W PF+L+ R YGRG+AD KG +A ++ A+ +
Sbjct: 62 RGG--VCLSGHTDVVPADGQAWSVPPFRLSERDGRLYGRGTADMKGYLACVLAAVPAFLA 119
Query: 160 EKLDGKVIFAFTGDEEIGGNMAMHIAEKLRDEGKLPTYMVNADGIGMKPIIRRRKGFSVE 219
L V AF+ DEE+G + L P + + +KP++ + ++
Sbjct: 120 APLRLPVHLAFSYDEEVGCLGVRSLLAALERRPHKPLLCIIGEPTELKPVLGHKGKLAMR 179
Query: 220 IRV 222
V
Sbjct: 180 CEV 182
>emb|CAB95019.1| (AJ252021) acetylornithinase (n2-acetyl-l-ornithine amidohydrolase)
[Moritella sp. 2693]
Length = 382
Score = 73.0 bits (176), Expect = 7e-12
Identities = 50/162 (30%), Positives = 75/162 (45%), Gaps = 14/162 (8%)
Query: 70 KFIKDTLDSWGIE-------SEIIEKDGYYAVYGEIGDGSPKVLFMAHFDVVPVNPEEWK 122
K + D L W E + + E +G + + G G +L H D VP + + W
Sbjct: 31 KPVIDLLSGWFSELGFSINITSVPETNGKFNLVATYGQGDGGLLLAGHTDTVPFDDDLWT 90
Query: 123 TDPFKLTIEGDRAYGRGSADDKGNVASLMLALRDLVNEKLDGKVIFAFTGDEE--IGGNM 180
DPFKLT + D+ YG G+ D KG A ++ A +++ KLD + T DEE + G
Sbjct: 91 KDPFKLTEKDDKWYGLGTIDMKGFFAFVLEACKNIDLTKLDKPLRILATADEETTMAGAR 150
Query: 181 AMHIAEKLRDEGKLPTYMVNADGIGMKPIIRRRKGFSVEIRV 222
A+ A+ R P Y V + GM P+ + S IR+
Sbjct: 151 AIAAAQSFR-----PDYAVIGEPTGMVPVFMHKGHMSEAIRI 187
>emb|CAA08876.1| (AJ009834) DapE [Bordetella pertussis]
Length = 379
Score = 71.8 bits (173), Expect = 2e-11
Identities = 42/139 (30%), Positives = 71/139 (50%), Gaps = 8/139 (5%)
Query: 67 DCPKFIKDTLDSWGIESEIIEKDGYYAVYGEIGDGSPKVLFMAHFDVVPVNP-EEWKTDP 125
DC + L+ G + E I + G ++ G G+P +F H DVVP P ++W +DP
Sbjct: 25 DCQMLLAQRLERIGFQCETIARGGVTNLWARRGAGAPLTVFAGHTDVVPPGPRDKWDSDP 84
Query: 126 FKLTIEGDRAYGRGSADDKGNVASLMLALRDLV--NEKLDGKVIFAFTGDEE---IGGNM 180
F T YGRG+AD K ++A+ ++A + V + + G + T DEE + G +
Sbjct: 85 FVPTERDGFLYGRGAADMKSSIAAFVVAAEEFVAGHPEHPGSIALLITSDEEGPAVDGTV 144
Query: 181 AMHIAEKLRDEGKLPTYMV 199
++++LR G+ Y +
Sbjct: 145 I--VSDELRQRGEQLDYCI 161
>pir||E75324 ArgE/DapE/Acy1 family protein - Deinococcus radiodurans (strain
R1) >gi|6459813|gb|AAF11573.1|AE002039_3 (AE002039)
ArgE/DapE/Acy1 family protein [Deinococcus radiodurans]
Length = 459
Score = 71.8 bits (173), Expect = 2e-11
Identities = 51/166 (30%), Positives = 77/166 (45%), Gaps = 10/166 (6%)
Query: 52 FETVNDPVKGMKPSKD-----CPKFIKDTLDSWGIESEIIEKDGYYAVYGEI--GDGSPK 104
FE + P P++ ++++ L+S G + + G+ VY E G P
Sbjct: 20 FELLRIPSVSADPARKGDMTRAAEWLRSKLESLGFTARVDATPGHPLVYAERLHAPGKPT 79
Query: 105 VLFMAHFDVVPVNP-EEWKTDPFKLTIEGDRAYGRGSADDKGNVASLMLALRDLVNE-KL 162
VL H+DV P P EEW T PF+ T+ R Y RGS DDKG + + + L+++ +L
Sbjct: 80 VLIYGHYDVQPEAPLEEWHTPPFEPTVRDGRIYARGSTDDKGQAFAHLKGVELLLSQGEL 139
Query: 163 DGKVIFAFTGDEEIGGNMAMHIAEKLRDEGKLPTYMVNADGIGMKP 208
V F G+EEIG +DE K ++ +DG P
Sbjct: 140 PVNVKFLLEGEEEIGSASIGDYLTAHKDELKADVILI-SDGSRFAP 184
>gb|AAK41759.1| Succinyl-diaminopimelate desuccinylase (dapE) [Sulfolobus
solfataricus]
Length = 410
Score = 70.2 bits (169), Expect = 5e-11
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 41 DVVSLLSELVSFETVNDPVKGMKPSKDCPKFIKDTLDSWGIESEIIE----------KDG 90
++V L EL+ T N P G+ K IK+ LD +G ++++IE + G
Sbjct: 14 EIVDFLKELIRIPTENPP--GLNYEK-IVNVIKNKLDEFGYKTQVIEPTDEELKSLIRFG 70
Query: 91 YYA---VYGEIGDGSPKVLFMAHFDVVPVNPEEWKTDPFKLTIEGDRAYGRGSADDKGNV 147
Y + G +G+G+ ++ F AH+DVVP E W DP+K + + YGRG++D K +
Sbjct: 71 YGKRPNLVGYLGNGNNRIAFNAHYDVVPAG-EGWSVDPYKGIEKDGKIYGRGASDMKSGI 129
Query: 148 ASLMLALRDLVNEKL---DGKVIFAFTGDEEIGGN 179
+ + A+ L KL + +VI DEE GN
Sbjct: 130 VAQIYAIEMLRRAKLLPSNIQVIQTIVPDEETVGN 164
>emb|CAC12063.1| (AL445066) acetylornithine deacetylase related protein
[Thermoplasma acidophilum]
Length = 399
Score = 69.9 bits (168), Expect = 6e-11
Identities = 51/156 (32%), Positives = 74/156 (46%), Gaps = 11/156 (7%)
Query: 42 VVSLLSELVSFETVNDPVKGMKPSKDCPKFIKDTLDSWGIES--EIIEKDGYYAVYGEI- 98
+V + ++ ++ P G + KD I+ L G KD Y + I
Sbjct: 12 IVEVARRIIRIPAIS-PASGGEGEKDRADEIEKILRELGYNDYQRYDMKDEYGKIRSNIV 70
Query: 99 ---GDGSPKVLFMAHFDVVPV-NPEEWKTDPFKLTIEGDRAYGRGSADDKGNVASLMLAL 154
G G + +AH D VPV +P W PF +T+EGDR YGRG+ DD V + +L L
Sbjct: 71 IRAGKGEKVLWLVAHIDTVPVGDPALWTKPPFDVTVEGDRMYGRGTEDDGQAVFTALLIL 130
Query: 155 RDLVNEKLDGKVIF--AFTGDEEIGGNMAM-HIAEK 187
RD+ L K+ F AF DEE+G + ++ EK
Sbjct: 131 RDIKKNGLKQKMQFGVAFVADEEMGSKYGIQYLLEK 166
>sp|P44514|DAPE_HAEIN SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE (SDAP)
>gi|1075330|pir||F64048 succinyl-diaminopimelate
desuccinylase (EC 3.5.1.18) - Haemophilus influenzae
(strain Rd KW20) >gi|1573051|gb|AAC21776.1| (U32695)
succinyl-diaminopimelate desuccinylase (dapE)
[Haemophilus influenzae Rd]
Length = 377
Score = 69.5 bits (167), Expect = 8e-11
Identities = 46/160 (28%), Positives = 77/160 (47%), Gaps = 10/160 (6%)
Query: 42 VVSLLSELVSFETVNDPVKGMKPSKDCPKFIKDTLDSWGIESEIIEKDGYYAVYGEIGDG 101
VVSL +L+ +++ +G C + I + L+ G + E + + ++ + G
Sbjct: 5 VVSLAQDLIRRPSISPNDEG------CQQIIAERLEKLGFQIEWMPFNDTLNLWAKHGTS 58
Query: 102 SPKVLFMAHFDVVPVNPE-EWKTDPFKLTIEGDRAYGRGSADDKGNVASLMLALRDLV-- 158
P + F H DVVP E +W + PF I YGRG+AD KG++A++++A + V
Sbjct: 59 EPVIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKA 118
Query: 159 NEKLDGKVIFAFTGDEE-IGGNMAMHIAEKLRDEGKLPTY 197
N G + T DEE + +H+ E L + TY
Sbjct: 119 NPNHKGTIALLITSDEEATAKDGTIHVVETLMARDEKITY 158
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.139 0.395
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182199663
Number of Sequences: 2977
Number of extensions: 8201254
Number of successful extensions: 17937
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 17914
Number of HSP's gapped (non-prelim): 20
length of query: 474
length of database: 189,106,746
effective HSP length: 57
effective length of query: 417
effective length of database: 154,992,987
effective search space: 64632075579
effective search space used: 64632075579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)