BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0582 (PAB0582) DE:Hypothetical protein
         (389 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75133 hypothetical protein PAB0582 - Pyrococcus abyssi (st...   789  0.0
pir||H71115 hypothetical protein PH0695 - Pyrococcus horikoshii ...   603  e-172

>pir||G75133 hypothetical protein PAB0582 - Pyrococcus abyssi (strain Orsay)
           >gi|5458295|emb|CAB49784.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 389
           
 Score =  789 bits (2016), Expect = 0.0
 Identities = 389/389 (100%), Positives = 389/389 (100%)

Query: 1   MRWRDIPRDAKVYMLYHTIIEPQLIVWLLFPLYLMKTGYSILEVGAFFTAVNLASIPLTY 60
           MRWRDIPRDAKVYMLYHTIIEPQLIVWLLFPLYLMKTGYSILEVGAFFTAVNLASIPLTY
Sbjct: 1   MRWRDIPRDAKVYMLYHTIIEPQLIVWLLFPLYLMKTGYSILEVGAFFTAVNLASIPLTY 60

Query: 61  VFGRMFNRWDIKKGLIAIDFLDGVAYVLYGFAKGSIAPILLFLGRLFEKLSEMLYPLYRA 120
           VFGRMFNRWDIKKGLIAIDFLDGVAYVLYGFAKGSIAPILLFLGRLFEKLSEMLYPLYRA
Sbjct: 61  VFGRMFNRWDIKKGLIAIDFLDGVAYVLYGFAKGSIAPILLFLGRLFEKLSEMLYPLYRA 120

Query: 121 YEQIIYPRDKYEEIFTWHLRLPEISRLIFFPILGYIFGYIYTEPSHYRLAFLIFGLLSAF 180
           YEQIIYPRDKYEEIFTWHLRLPEISRLIFFPILGYIFGYIYTEPSHYRLAFLIFGLLSAF
Sbjct: 121 YEQIIYPRDKYEEIFTWHLRLPEISRLIFFPILGYIFGYIYTEPSHYRLAFLIFGLLSAF 180

Query: 181 TITYIWIFLPSVNKEERISPEGFKFREGEFKLLLAFEGFLTIAWALAPTIVLLNYVIFVL 240
           TITYIWIFLPSVNKEERISPEGFKFREGEFKLLLAFEGFLTIAWALAPTIVLLNYVIFVL
Sbjct: 181 TITYIWIFLPSVNKEERISPEGFKFREGEFKLLLAFEGFLTIAWALAPTIVLLNYVIFVL 240

Query: 241 HKTIFEVTLISCASSVATILGTYVSERIPKERGFHAIALGMFINAFYAFVMALSPPFWIV 300
           HKTIFEVTLISCASSVATILGTYVSERIPKERGFHAIALGMFINAFYAFVMALSPPFWIV
Sbjct: 241 HKTIFEVTLISCASSVATILGTYVSERIPKERGFHAIALGMFINAFYAFVMALSPPFWIV 300

Query: 301 LLVYSLGDFGLAMWFPFYRAWMFRLIPNERVSEFHAAISSYRRVIELVAPVIAGALATLH 360
           LLVYSLGDFGLAMWFPFYRAWMFRLIPNERVSEFHAAISSYRRVIELVAPVIAGALATLH
Sbjct: 301 LLVYSLGDFGLAMWFPFYRAWMFRLIPNERVSEFHAAISSYRRVIELVAPVIAGALATLH 360

Query: 361 PTLPYAASLVGFLSAGLMFIIIKRREATQ 389
           PTLPYAASLVGFLSAGLMFIIIKRREATQ
Sbjct: 361 PTLPYAASLVGFLSAGLMFIIIKRREATQ 389


>pir||H71115 hypothetical protein PH0695 - Pyrococcus horikoshii
           >gi|3257103|dbj|BAA29786.1| (AP000003) 388aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 388
           
 Score =  603 bits (1539), Expect = e-172
 Identities = 270/385 (70%), Positives = 329/385 (85%)

Query: 1   MRWRDIPRDAKVYMLYHTIIEPQLIVWLLFPLYLMKTGYSILEVGAFFTAVNLASIPLTY 60
           MRW +IPR+AK YMLYHT+I P LIVW LFPLYLMKTGYS+LEVGAFFTA+N+ASIPLTY
Sbjct: 4   MRWNEIPREAKAYMLYHTLIAPGLIVWTLFPLYLMKTGYSVLEVGAFFTAINIASIPLTY 63

Query: 61  VFGRMFNRWDIKKGLIAIDFLDGVAYVLYGFAKGSIAPILLFLGRLFEKLSEMLYPLYRA 120
           +FGR+FN WDIKKGLI ID LDGVAYV+YG AKG+IAP++LF GR+ EKLS +LYPLY+A
Sbjct: 64  IFGRLFNNWDIKKGLITIDVLDGVAYVMYGLAKGAIAPLMLFAGRIVEKLSTLLYPLYQA 123

Query: 121 YEQIIYPRDKYEEIFTWHLRLPEISRLIFFPILGYIFGYIYTEPSHYRLAFLIFGLLSAF 180
           YEQIIYP DKYEEIF WHLRLPEI+ L+ FPI+GY+ GY+Y +P HYRL FL FGL S  
Sbjct: 124 YEQIIYPEDKYEEIFAWHLRLPEIATLVSFPIMGYLLGYVYNKPEHYRLTFLFFGLFSVV 183

Query: 181 TITYIWIFLPSVNKEERISPEGFKFREGEFKLLLAFEGFLTIAWALAPTIVLLNYVIFVL 240
           T+TY+W+FLP V KEERI+PEGF F+ GEFK LL FE  LT+AW LAP  +L+NYV+FVL
Sbjct: 184 TVTYLWLFLPPVGKEERINPEGFTFKVGEFKRLLVFETLLTLAWGLAPEFILINYVVFVL 243

Query: 241 HKTIFEVTLISCASSVATILGTYVSERIPKERGFHAIALGMFINAFYAFVMALSPPFWIV 300
            KTIFE+TLI+ A SV  I GTYVSER+PKE+GF+AI+LGMF+NA YA VMAL+PPFW+ 
Sbjct: 244 KKTIFEITLIAVACSVMRIAGTYVSERVPKEKGFYAISLGMFLNALYALVMALAPPFWLA 303

Query: 301 LLVYSLGDFGLAMWFPFYRAWMFRLIPNERVSEFHAAISSYRRVIELVAPVIAGALATLH 360
           L+VY++GDFG A+WFPFYR+W+F+LIP ER +EFHAA+SSY+RV+ L+ P+ AGALA++H
Sbjct: 304 LVVYAIGDFGNALWFPFYRSWLFKLIPKERTTEFHAALSSYQRVLGLITPITAGALASIH 363

Query: 361 PTLPYAASLVGFLSAGLMFIIIKRR 385
           PTLPYAASLV F+ AG+  + I ++
Sbjct: 364 PTLPYAASLVAFILAGVFLLWIAKK 388


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.332    0.148    0.462 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143216686
Number of Sequences: 2977
Number of extensions: 6057944
Number of successful extensions: 22907
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22905
Number of HSP's gapped (non-prelim): 2
length of query: 389
length of database: 189,106,746
effective HSP length: 49
effective length of query: 340
effective length of database: 159,780,883
effective search space: 54325500220
effective search space used: 54325500220
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 166 (69.1 bits)