BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0583 831274 831606 111 !not a gene!
         (111 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C72700 hypothetical protein APE1018 - Aeropyrum pernix (str...    80  6e-15

>pir||C72700 hypothetical protein APE1018 - Aeropyrum pernix (strain K1)
          >gi|5104688|dbj|BAA80003.1| (AP000060) 104aa long
          hypothetical protein [Aeropyrum pernix]
          Length = 104
          
 Score = 80.4 bits (195), Expect = 6e-15
 Identities = 43/93 (46%), Positives = 54/93 (57%)

Query: 7  SAPFSSIASMKFSTLPLLLLIFCPSRVPKPLTAIPLGQCSSLNIATWLNMKNVKWFGIRS 66
          SAP  S A ++   LPL LLIF P+   +P T + LG  S  N+A W NMK  +WFG+RS
Sbjct: 3  SAPHQSRACLRRMKLPLDLLIFSPATRTQPFTPMALGHSSLGNMAVWWNMKKTRWFGMRS 62

Query: 67 FPEHLQSSGYQYSNSSFISWIISAGIPVFFSSS 99
           P  L S GYQY NS  IS     G+P+   +S
Sbjct: 63 LPLILMSRGYQYRNSLLISSSSPWGMPLLLDTS 95


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.131    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39350066
Number of Sequences: 2977
Number of extensions: 1426353
Number of successful extensions: 3550
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3549
Number of HSP's gapped (non-prelim): 1
length of query: 111
length of database: 189,106,746
effective HSP length: 52
effective length of query: 59
effective length of database: 157,985,422
effective search space: 9321139898
effective search space used: 9321139898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 159 (66.3 bits)