BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0588 (PAB0588) DE:Hypothetical protein
(1010 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75134 hypothetical protein PAB0588 - Pyrococcus abyssi (st... 2034 0.0
pir||H72310 conserved hypothetical protein - Thermotoga maritima... 1399 0.0
pir||A71080 hypothetical protein PH0905 - Pyrococcus horikoshii ... 1308 0.0
pir||H72734 hypothetical protein APE0416 - Aeropyrum pernix (str... 674 0.0
gi|11500033 Predicted DNA methylase containing a Zn-ribbon modul... 297 3e-79
pir||C69543 hypothetical protein AF2347 - Archaeoglobus fulgidus... 178 3e-43
pir||A69543 hypothetical protein AF2345 - Archaeoglobus fulgidus... 100 1e-19
>pir||F75134 hypothetical protein PAB0588 - Pyrococcus abyssi (strain Orsay)
>gi|5458302|emb|CAB49791.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 1010
Score = 2034 bits (5212), Expect = 0.0
Identities = 1010/1010 (100%), Positives = 1010/1010 (100%)
Query: 1 MGYKRLIESLNFPVVEVNKKSEKEKGPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDV 60
MGYKRLIESLNFPVVEVNKKSEKEKGPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDV
Sbjct: 1 MGYKRLIESLNFPVVEVNKKSEKEKGPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDV 60
Query: 61 DVSRFKSMIGLNESTPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGLDVTAV 120
DVSRFKSMIGLNESTPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGLDVTAV
Sbjct: 61 DVSRFKSMIGLNESTPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGLDVTAV 120
Query: 121 ELLPVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTW 180
ELLPVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTW
Sbjct: 121 ELLPVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTW 180
Query: 181 EIKCPHCGRFTLAVGNYWLARVKDSKGYKRLAYMVPEGEGVRIIDLNEILGDVSRAKVKG 240
EIKCPHCGRFTLAVGNYWLARVKDSKGYKRLAYMVPEGEGVRIIDLNEILGDVSRAKVKG
Sbjct: 181 EIKCPHCGRFTLAVGNYWLARVKDSKGYKRLAYMVPEGEGVRIIDLNEILGDVSRAKVKG 240
Query: 241 EEIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNVI 300
EEIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNVI
Sbjct: 241 EEIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNVI 300
Query: 301 RYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDERFARQRLLVKVKVKDGDLIFEPATK 360
RYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDERFARQRLLVKVKVKDGDLIFEPATK
Sbjct: 301 RYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDERFARQRLLVKVKVKDGDLIFEPATK 360
Query: 361 EDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRITPILSAERWFHLFNPRQLLTLIK 420
EDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRITPILSAERWFHLFNPRQLLTLIK
Sbjct: 361 EDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRITPILSAERWFHLFNPRQLLTLIK 420
Query: 421 IVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWNSSLIM 480
IVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWNSSLIM
Sbjct: 421 IVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWNSSLIM 480
Query: 481 APSLAVRGIAMQWNPYEISPSARWTGSWRQGIEHTFSRSLEYLTTALAPSGQKTLTDFTK 540
APSLAVRGIAMQWNPYEISPSARWTGSWRQGIEHTFSRSLEYLTTALAPSGQKTLTDFTK
Sbjct: 481 APSLAVRGIAMQWNPYEISPSARWTGSWRQGIEHTFSRSLEYLTTALAPSGQKTLTDFTK 540
Query: 541 TNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSDSDGKRLIP 600
TNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSDSDGKRLIP
Sbjct: 541 TNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSDSDGKRLIP 600
Query: 601 RFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDENRKEKAVQHFENLFAQAFV 660
RFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDENRKEKAVQHFENLFAQAFV
Sbjct: 601 RFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDENRKEKAVQHFENLFAQAFV 660
Query: 661 AMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTESSTSIVKRGKLS 720
AMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTESSTSIVKRGKLS
Sbjct: 661 AMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTESSTSIVKRGKLS 720
Query: 721 LDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHGYRGLDLLYGVMASILEEV 780
LDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHGYRGLDLLYGVMASILEEV
Sbjct: 721 LDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHGYRGLDLLYGVMASILEEV 780
Query: 781 TKYSEVTSPKGALSTREILERHVYPATIRGIVEALADVKGRITSNEGLFYSAYKVLFGNA 840
TKYSEVTSPKGALSTREILERHVYPATIRGIVEALADVKGRITSNEGLFYSAYKVLFGNA
Sbjct: 781 TKYSEVTSPKGALSTREILERHVYPATIRGIVEALADVKGRITSNEGLFYSAYKVLFGNA 840
Query: 841 SISPNDIVLLNLATFTNAKLLIRDKILKQVGSGKKEFRLYSPDILGERALNTRELQAFLR 900
SISPNDIVLLNLATFTNAKLLIRDKILKQVGSGKKEFRLYSPDILGERALNTRELQAFLR
Sbjct: 841 SISPNDIVLLNLATFTNAKLLIRDKILKQVGSGKKEFRLYSPDILGERALNTRELQAFLR 900
Query: 901 ERGLNPQDPVPRNSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEEAIAMAKLVSSY 960
ERGLNPQDPVPRNSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEEAIAMAKLVSSY
Sbjct: 901 ERGLNPQDPVPRNSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEEAIAMAKLVSSY 960
Query: 961 YKAMYSQMLSPLGVVIRADERKVEGELMKDGHYEVVLMSRLVRNLGGGVI 1010
YKAMYSQMLSPLGVVIRADERKVEGELMKDGHYEVVLMSRLVRNLGGGVI
Sbjct: 961 YKAMYSQMLSPLGVVIRADERKVEGELMKDGHYEVVLMSRLVRNLGGGVI 1010
>pir||H72310 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981526|gb|AAD36066.1|AE001760_16 (AE001760)
conserved hypothetical protein [Thermotoga maritima]
Length = 1008
Score = 1399 bits (3582), Expect = 0.0
Identities = 699/1016 (68%), Positives = 832/1016 (81%), Gaps = 19/1016 (1%)
Query: 4 KRLIESLNFPVVEVNKKSEKEKGPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDVDVS 63
K +ESL FPV EVNKKS EKGP RPPYWEMVF+WTRKPLVGAR++IA +LLPE+VD +
Sbjct: 2 KTFLESLKFPVQEVNKKSSGEKGPGRPPYWEMVFYWTRKPLVGARSVIAGALLPENVDEN 61
Query: 64 RFKSMIGLNESTPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGLDVTAVELL 123
FK+ + L+ TPHR NP+IP + KYF GKKLLDPFAGFGSIPLEGLRLGLDVTAVELL
Sbjct: 62 LFKAAVRLSSPTPHRENPQIPAEFAKYFEGKKLLDPFAGFGSIPLEGLRLGLDVTAVELL 121
Query: 124 PVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTWEIK 183
P Y+FLKAVLEYPKKFGK+LV+DVERWG WITEQLKNDPEIRELYDDDVAVYIGTWEI+
Sbjct: 122 PTTYIFLKAVLEYPKKFGKSLVKDVERWGEWITEQLKNDPEIRELYDDDVAVYIGTWEIR 181
Query: 184 CPHCGRFTLAVGNYWLARVKDSKGYKRLAYMVPEGEG----VRIIDLNEILGDVSRAKVK 239
CPHCGR+T A+GN+WLARVKD KGYKRLAYM PE +G +R+IDLNEIL D+S+A V
Sbjct: 182 CPHCGRWTPAIGNFWLARVKDGKGYKRLAYMKPERKGDEIEIRVIDLNEILDDISKANVD 241
Query: 240 GEEIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNV 299
G EI+FEG+ +V+ V +AV +GK+K+ DV+I G+ VIF VPS NIE+R+ QLTCL CGNV
Sbjct: 242 GNEIIFEGENYVKTVEEAVRDGKLKQSDVKIDGNTVIFEVPSANIESRRDQLTCLMCGNV 301
Query: 300 IRYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDERFARQRLLVKVKVKDGDLIFEPAT 359
I+YADENG H+ + G DFYVKFAL+KYHEGDERFARQRLLVKVKVKDGDLIFEPAT
Sbjct: 302 IKYADENGNHHMKLKNG---DFYVKFALRKYHEGDERFARQRLLVKVKVKDGDLIFEPAT 358
Query: 360 KEDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRITPILSAERWFHLFNPRQLLTLI 419
KED+EKL +AKEKVRE++E+ D DVP+E IPLYENRRITPILSAE+W+ FNPRQLLTLI
Sbjct: 359 KEDSEKLWKAKEKVREMLEKGDLDVPSEAIPLYENRRITPILSAEKWYQFFNPRQLLTLI 418
Query: 420 KIVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWNSSLI 479
KIVRLIREVG+KVEEEK+ EGW++ERAFEYAEAVATYLS ++KYA YNS VT W+S+
Sbjct: 419 KIVRLIREVGRKVEEEKIAEGWNKERAFEYAEAVATYLSTAMLKYAYYNSIVTRWDSTWW 478
Query: 480 -MAPSLAVRGIAMQWNPYEISPSARWTGSWRQGIEHTFS--RSLEYLTTALAPSGQKTLT 536
+ +++ RGIAM WN E SP W S+ I+ + R ++YLT+AL+ S Q+TL
Sbjct: 479 KIGETMSTRGIAMNWNWTE-SP---WFSSFGGMIKTLLAILRGVKYLTSALS-SSQRTLA 533
Query: 537 DFTKTNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSDSDGK 596
DFT+ N+VKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSD +
Sbjct: 534 DFTE-NSVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSDVENG 592
Query: 597 RLIPRFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDENRKEKAVQHFENLFA 656
+LIPRFHK AFFK++G KWVEIKTQWQEFAK+EVSTNPGRFM+DEN+KEKAVQHFENLF+
Sbjct: 593 KLIPRFHKEAFFKRIGPKWVEIKTQWQEFAKKEVSTNPGRFMEDENKKEKAVQHFENLFS 652
Query: 657 QAFVAMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTESSTSIVKR 716
QAFVAMREHLKDDG+LVTYYAHTDP SW+NL+ AGWRRA LQITRAIPLTTES TSIV R
Sbjct: 653 QAFVAMREHLKDDGVLVTYYAHTDPGSWINLIEAGWRRARLQITRAIPLTTESETSIVSR 712
Query: 717 GKLSLDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHGYRGLDLLYGVMASI 776
GK+SLDTSIV VWRK K+ V+IS L EEI KA SA+ ++++GY GLDLLYGVMA+
Sbjct: 713 GKMSLDTSIVAVWRKQKEEKTVQISTLKEEIERKAKSSAREFIEYGYEGLDLLYGVMAAA 772
Query: 777 LEEVTKYSEVTSPKGALSTREILERHVYPATIRGIVEALADVKGRITSNEG--LFYSAYK 834
LEEVTKY E++S KG L+T EIL +VYPATIRGIV A+A+++G T + G +FY+AYK
Sbjct: 773 LEEVTKYREISSLKGPLTTEEILNEYVYPATIRGIVNAIAEIEGTGTLHSGTAMFYTAYK 832
Query: 835 VLFGNASISPNDIVLLNLATFTNAKLLIRDKILKQV-GSGKKEFRLYSPDILGERALNTR 893
+LFGNAS+S NDIVLL LAT T+ LI +LK+ S KE+ LY+PD+LG++AL+T+
Sbjct: 833 ILFGNASLSANDIVLLRLATSTDPSELISSGVLKEKRSSSSKEYTLYTPDLLGKKALDTK 892
Query: 894 ELQAFLRERGLNPQDPVPRNSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEEAIAM 953
E Q FL E+ L+P +P P+NSVDVL LLEYYSLLG +KE +E L+K A VEEA+ +
Sbjct: 893 EFQKFLHEKKLDPVEPKPKNSVDVLQLLEYYSLLGRSRVKEEIEKLRKMWAGEVEEALFI 952
Query: 954 AKLVSSYYKAMYSQMLSPLGVVIRADERKVEGELMKDGHYEVVLMSRLVRNLGGGV 1009
A+LVS YY +Y + + P+ + +++ EL KDG EVVLM RL+ +GG V
Sbjct: 953 ARLVSEYYAEIYIRKIDPVRRMKEEFASEIDRELEKDGFLEVVLMRRLLGYVGGAV 1008
>pir||A71080 hypothetical protein PH0905 - Pyrococcus horikoshii
>gi|3257316|dbj|BAA29999.1| (AP000004) 996aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 996
Score = 1308 bits (3348), Expect = 0.0
Identities = 678/1021 (66%), Positives = 805/1021 (78%), Gaps = 41/1021 (4%)
Query: 4 KRLIESLNFPVVEVNKKSEKEKGPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDVDVS 63
KRLIES NFP+ EVN+KS KEKGP RPPYWEMVFWWTRKPL+GARAIIAASLLPED DV+
Sbjct: 3 KRLIESPNFPIEEVNEKSLKEKGPGRPPYWEMVFWWTRKPLIGARAIIAASLLPEDYDVN 62
Query: 64 RFKSMIGLNESTPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGLDVTAVELL 123
+FKS I L+E H+ NP E FRGKKLLDPFAGFGSIPLEGLRLGLDVTAVELL
Sbjct: 63 KFKSKIRLSEG--HKANP------EPMFRGKKLLDPFAGFGSIPLEGLRLGLDVTAVELL 114
Query: 124 PVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTWEIK 183
P AY+FLKAVLEYPKKFG+ L+RDVE+WGNWITEQLKNDPEI+ELYD+DVAVYIGTWE+K
Sbjct: 115 PTAYIFLKAVLEYPKKFGRQLIRDVEKWGNWITEQLKNDPEIKELYDEDVAVYIGTWEVK 174
Query: 184 CPHCGRFTLAVGNYWLARVKDSKGYKRLAYMV--PEGEGVRIIDLNEILGDVSRAKVKGE 241
CPHCGR+T AVGN+WLARVKD K YKRLAYM P GE VRIIDLNEI DVS AKV E
Sbjct: 175 CPHCGRWTPAVGNFWLARVKDGKNYKRLAYMKIDPNGE-VRIIDLNEIFADVSGAKVSTE 233
Query: 242 --EIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNV 299
EI+ EGKG+VEKV+KA+E GK+KE DVEI+GDKV+F+VP PNIE RKSQL CL+CGNV
Sbjct: 234 RGEIILEGKGYVEKVKKAIERGKLKEEDVEIEGDKVVFKVPRPNIEGRKSQLVCLSCGNV 293
Query: 300 IRYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDERFARQRLLVKVKVKDGDLIFEPAT 359
I+YADE G HY +KP+G VDFYVKFAL+KYHEG+ERFARQRLLVKVKVK+ DLIFEPAT
Sbjct: 294 IKYADEEGNHYIEKPKGKNVDFYVKFALRKYHEGNERFARQRLLVKVKVKNKDLIFEPAT 353
Query: 360 KEDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRITPILSA-ERWFHLFNPRQLLTL 418
+EDNEKL +AKEKV+E++E+KDPDVPTE++ Y + I W +LFNPRQLLTL
Sbjct: 354 REDNEKLWKAKEKVKEMVEKKDPDVPTEKMQPYGGATLGDIYKVFISWNNLFNPRQLLTL 413
Query: 419 IKIVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWNSSL 478
IKIVRLIREVGKKVEEEK+ EGW +ERAFEYAEAVATYLS+VL++ +NS T W S
Sbjct: 414 IKIVRLIREVGKKVEEEKIAEGWSKERAFEYAEAVATYLSIVLVRLMNFNSICTSWYSGS 473
Query: 479 IMA----PSLAVRGIAMQWN--PYEISPSARWTGSWRQGIEHTFSRSLEYLTTALAPSGQ 532
++ SL+ RGIAM WN I + S+R+ E R+L+YLT+AL+ S Q
Sbjct: 474 LLTNKIQSSLSFRGIAMVWNWGDTNILYEEGNSYSFRKSTESVL-RALQYLTSALS-SSQ 531
Query: 533 KTLTDFTKTNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSD 592
KTL DFT N++KVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSD
Sbjct: 532 KTLADFT-GNSIKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSD 590
Query: 593 SDGKRLIPRFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRF--MDDENRKEKAVQH 650
+ +L+PRFH+ AFFK++G KWVEIKTQWQEFAK+EVS P RF + KE A +H
Sbjct: 591 VENGKLVPRFHREAFFKRIGPKWVEIKTQWQEFAKKEVSMYPARFDGKSGKEAKEIASKH 650
Query: 651 FENLFAQAFVAMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTESS 710
FENLF+QAFVAMREHLKDDG+LVTYYAHTD ESW+ L+ AGWR+A LQ+TRA PL TESS
Sbjct: 651 FENLFSQAFVAMREHLKDDGILVTYYAHTDLESWITLIEAGWRKAKLQVTRAFPLGTESS 710
Query: 711 TSIVKRGKLSLDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHGYRGLDLLY 770
+ RGK++LDTS+VVVWRK + V + + E ++E ++SAK ++ HGY L+LLY
Sbjct: 711 QRVTARGKMALDTSVVVVWRKRNEEKEVWVGDIEETLTEVGMKSAKEFISHGYHRLNLLY 770
Query: 771 GVMASILEEVTKYSEVTSPKGALSTREILERHVYPATIRGIVEALA-DVKGRITSNEGLF 829
GVMAS+L EVTKY V SPKG LS REILE++VYPATIRGIV A+ DVK S EG+F
Sbjct: 771 GVMASVLSEVTKYKAVKSPKGELSVREILEKYVYPATIRGIVGAITEDVKAETLSREGIF 830
Query: 830 YSAYKVLFGNASISPNDIVLLNLATFTNAKLLIRDKILKQVGSGKKEFRLYSPDILGERA 889
Y+AYKVLFGNA +SPNDI+LLNLAT ++ L + +ILK+V S E LYSPD+LG++A
Sbjct: 831 YTAYKVLFGNAKVSPNDIILLNLATAVDSSSLQKLRILKRVNS---EITLYSPDLLGKKA 887
Query: 890 LNTRELQAFLRERGLNPQDPVPRNSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEE 949
L+ RELQ FL+ERG RNS+DVLH+LE+ SLLG+ ++E +E LK + V E
Sbjct: 888 LDARELQKFLKERGAEKY----RNSIDVLHVLEHASLLGASKVRETIEELKSKME--VNE 941
Query: 950 AIAMAKLVSSYYKAMYSQMLSPLGVVIRADERKVEGELMKDGHYEVVLMSRLVRNLGGGV 1009
AI++AKLV+SYYK +YS LG+ DE+++ L KDG YEV+LM RLV+ + G +
Sbjct: 942 AISIAKLVASYYKRIYS---LTLGI---KDEKEITKRLEKDGLYEVILMERLVKAVRGEM 995
Query: 1010 I 1010
+
Sbjct: 996 L 996
>pir||H72734 hypothetical protein APE0416 - Aeropyrum pernix (strain K1)
>gi|5104056|dbj|BAA79372.1| (AP000059) 1007aa long
hypothetical protein [Aeropyrum pernix]
Length = 1007
Score = 674 bits (1720), Expect = 0.0
Identities = 440/1074 (40%), Positives = 578/1074 (52%), Gaps = 212/1074 (19%)
Query: 4 KRLIESLNFPVVEVNKKSEKEK-GPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDVDV 62
KR IE+ FP+ +N+ S +EK G RPPYWEMVFWWTRKPL GARA+IA +LLP D D
Sbjct: 10 KRFIETSRFPISLINEVSAREKQGGGRPPYWEMVFWWTRKPLAGARAVIAGALLPGDYDK 69
Query: 63 SRFKSMIGLNES-TPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGL-DVTAV 120
+ F S + L PHR+NP +P+ +++ F+ KLLDPFAGFGSIPLE +RLG+ +V AV
Sbjct: 70 TGFLSELRLIAGKVPHRLNPILPRGVKERFKQAKLLDPFAGFGSIPLEAIRLGVGEVVAV 129
Query: 121 ELLPVAYVFLKAVLEYPKKF--------------------------------GKT----- 143
E LP AY+FLKA+LEYPK++ GKT
Sbjct: 130 EFLPTAYIFLKAMLEYPKEYSEARVRVLGREIRELELDKAVSGFIREKSIFDGKTYEIPA 189
Query: 144 LVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTWEIKCPHCGRFTLAVGNYWLARVK 203
L+ DV RWG WIT++L DP+I+ELYD+D AVYIGTWE+KCP CGR+T VGN+WLA+VK
Sbjct: 190 LIYDVARWGRWITKRLGEDPDIKELYDEDAAVYIGTWEVKCPVCGRYTPLVGNWWLAKVK 249
Query: 204 DSKGYKRLAYMVPEGEGVRIIDLNEILGDVSRAKVKGEEIVFEGKGFVEKVRKAVEEGKI 263
KR AYM PE EG +I G +I+ EGK
Sbjct: 250 G----KRYAYMKPETEGNKI----------------GIKII---------------EGKT 274
Query: 264 KEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNVIRYAD-ENGRHYTQKPEGV----- 317
PSPN+ R CL CG+ I Y D GR Y K E
Sbjct: 275 GGS-------------PSPNVAGRPELAECLLCGSRITYIDPRTGRTYRTKNEVANTLIR 321
Query: 318 -KVDFYVKFALKKYHEGDERF--------------ARQRLLVKVKVKDGDLIFEPATKED 362
+++FY K ALK +++ E + AR RLLVKVK+ + DL FEPAT D
Sbjct: 322 SRLEFYPKHALKDWNKKLEEYLEGGIALEELRNSLARPRLLVKVKIANKDLKFEPATDRD 381
Query: 363 NEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRI-TPILSAERWFHLFNPRQLLTLIKI 421
+EKL +A EK+R+L DPD+PTE IP Y+NR + T ++WF LFNPRQLLTL+K+
Sbjct: 382 DEKLWKALEKLRQLWG--DPDIPTEPIPSYDNRNLMTYTWGNDKWFKLFNPRQLLTLVKL 439
Query: 422 VRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWN-SSLIM 480
V+LIRE GK++EEEKL+EGW E A +YAEA+ TYL++ ++ YNS VT W S ++
Sbjct: 440 VKLIRETGKRIEEEKLREGWSREEAHKYAEAITTYLAIAFLRSMTYNSLVTRWKPDSWVL 499
Query: 481 ---APSLAVRGIAMQWNPYEISPSARWTGSW--RQGIEHTFSRSLEYLTTAL-----APS 530
SL+ RGIAM WN W +W + I + + S+E + AL A S
Sbjct: 500 NKVQDSLSTRGIAMTWN---------WGDTWLAHEDISYNYFDSVETVVDALLYLVSAVS 550
Query: 531 GQKTLTDFTKTNTVKVLQGDATSLNL--GEKFDVIVTDPPYADDVPYTELSDFYYVWLKR 588
G + V+VL DAT L+ GE+FDVIVTDPPY DDVPY ELSDFYYVWLKR
Sbjct: 551 GS--------SGRVRVLLDDATVLSKLEGERFDVIVTDPPYRDDVPYAELSDFYYVWLKR 602
Query: 589 ALSDSDGKRLIPRFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDENRKEKAV 648
+LS G L RFH A TQW+ FA E+S N GR R+ A
Sbjct: 603 SLS---GDGLALRFHSDALVSN---------TQWEGFALNEISYNEGRLRYFGVRE--AE 648
Query: 649 QHFENLFAQAFVAMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTE 708
++E L AF + E LKDDGL+VTY+AH+ PE+W+ L+ AGWRRAGL++TRA TE
Sbjct: 649 DYYERLMGMAFKRLSELLKDDGLIVTYFAHSSPEAWIELVEAGWRRAGLRVTRAWAFATE 708
Query: 709 SSTSIVKRGKLSLDTSIVVVWRKSKKIDRVEISRLNE--EISEKAIESAKL----YMKHG 762
S + RGK +L++SIVVVWRK K + R+ E ++ +A+E+A+ K G
Sbjct: 709 SPQRVTARGKTALESSIVVVWRKRGK----DGGRVGEYVDVYREALENARRARDEAFKSG 764
Query: 763 YRGLDLLYGVMASILEEVTKYSEVTSPKGALSTREILERHVYPATIRGIVEALADVKGRI 822
D+ M L T Y V L++R+++ AT +A+ I
Sbjct: 765 LTDSDMFLSTMLGALSTFTSYDRVVHFGRGLTSRDVVRESYAIAT-----RVIANATETI 819
Query: 823 TSNEGLFYSAYKVLFGNAS-----------------ISPNDIVLLNLA------------ 853
S E LFY A K +F S +S +D+++L+
Sbjct: 820 RSPEALFYLASKAIFRRYSRPGGQTTLSSAPAEPIVLSSHDVIILSYGFLRSVERPEKEG 879
Query: 854 --TFTNAKLLIRDKILKQVGSGK-KEFRLYSPDILGERALNTRELQAFLRERGLNP--QD 908
TF NA ++ + +K K K F L P EL+ L RG+NP D
Sbjct: 880 YKTFVNAGIIKSAEEVKGANVAKQKAFALLEP-----LDSTIEELKKLLGVRGVNPIKMD 934
Query: 909 PVPR--NSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEEAIAMAKLVSSY 960
R NS+D LHLLEYY+ G K + L ++ V EA+ +AK++SSY
Sbjct: 935 AERRSFNSIDALHLLEYYAKQGRSEFKTTYQILYSKYPKQVREAVEVAKVISSY 988
>gi|11500033 Predicted DNA methylase containing a Zn-ribbon module
[Archaeoglobus fulgidus]
Length = 751
Score = 297 bits (753), Expect = 3e-79
Identities = 246/826 (29%), Positives = 376/826 (44%), Gaps = 165/826 (19%)
Query: 4 KRLIESLNFPVVEVNKKSEKEK-GPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDVDV 62
K LIE PV E++++++KEK G A+PP + + +WW RKPL+ ARA + +L+ ++
Sbjct: 2 KLLIEEF-IPVEEISEEAKKEKLGNAKPPIFSLHYWWARKPLITARAAVLGALISKE--- 57
Query: 63 SRFKSMIGLNESTPHRVNP-RIPQDLEKYFRGKK---------------------LLDPF 100
++G + + + RIP+D+ + R +LDPF
Sbjct: 58 -NLPMIVGNGDLKTNLLRILRIPKDINEGPRAHTQDPPAEYLKEAIIKTWGEIPTVLDPF 116
Query: 101 AGFGSIPLEGLRLGLDVTAVELLPVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLK 160
AG GSIP E LRLG + AV+ PVAY+ LK LEYPKK+G L+ DV+++ I +LK
Sbjct: 117 AGGGSIPFEALRLGCNAVAVDYNPVAYLILKETLEYPKKYGMKLIYDVKKYAEQIFRELK 176
Query: 161 NDPEIRELY----DDDVAVYIGTWEIKCPHCGRFTLAVGNYWLARVKDSKGYKRLAYMVP 216
E+ Y + DVA YI +W +KCP CG T VG++ LA+ K K LAY
Sbjct: 177 E--ELGRFYPKHDEKDVAAYIFSWVVKCPQCGFETPLVGSWQLAKTKRGKEV-YLAY--- 230
Query: 217 EGEGVRIIDLNEILGDVSRAKVKGEEIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVI 276
+V+G+E+ E ++EG EG+V +GD V
Sbjct: 231 --------------------EVEGDELKLE-----------IKEGMAPEGNVS-RGDGV- 257
Query: 277 FRVPSPNIEARKSQLTCLACGNVIRYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDER 336
CL CG I N Q E K L G E
Sbjct: 258 ----------------CLKCGAHI----PNDEVVKQIRENEKERMLAVALLNSGRGGKEY 297
Query: 337 FARQRLLVKVKVKDGDL-IFEPATKEDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENR 395
D DL FE A KE + R ++ +P ++P +
Sbjct: 298 DV---------PSDEDLKAFEEAEKELKKSWFRF---------YREGLIPDGEMP--RDY 337
Query: 396 RITPILSAERWFHLFNPRQLLTLIKIVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVAT 455
R T L + + LFNPRQLL ++K + + ++ ER EYA+A+
Sbjct: 338 RFT--LYLPKHYQLFNPRQLLLMVKFAEKAKRIVNEI----------AERDEEYAKAMGV 385
Query: 456 YLSMVLMKYAIYNSYVTYWNSSL-IMAPSLAVRGIAMQWNPYEISPSARWTGSWRQGIEH 514
YLS ++ K+ N T W+S +++ R +M W+ E++P + +G+ I
Sbjct: 386 YLSAIIAKHVDRNCRGTTWDSGYEVISSMFGKRRPSMMWDHTEVNPFVKSSGTLINNIND 445
Query: 515 TFSRSLEYLTTALAPSGQKTLTDFTKTNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVP 574
+ +L+Y L+ + T++++ S KF +IVTDPPY DD P
Sbjct: 446 VLN-ALKYSIEKLS----------STQATIEIINESTASWKPQRKFKIIVTDPPYYDDTP 494
Query: 575 YTELSDFYYVWLKRALSDSDGKRLIPRFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNP 634
Y E+S+ +Y+W KR + F+K + + F V T+
Sbjct: 495 YGEVSEVFYIWHKRIVGH--------------LFEK----------ESKYFRNDRVETS- 529
Query: 635 GRFMDDENRKEKAVQHFENLFAQAFVAMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRR 694
+D ++K + F NLF + + + L DDG+LV ++AH PE+W +L A R+
Sbjct: 530 -EELDVGGNRDK--EFFNNLFIKTMQNVHDLLDDDGILVLFFAHKSPEAWYFVLEA-LRQ 585
Query: 695 AGLQITRAIPLTTESSTSIVKRGKLSLDTSIVVVWRKSKKIDRVEISRLNEEISEKAIES 754
AG IT P+ TES+ S+V RGK S+ S+++ RK K+ I + EI EK +
Sbjct: 586 AGFNITATFPIHTESTESVVARGKKSIYHSLIITARKRKEEKTGIIEEILPEIEEKIYQR 645
Query: 755 AKLYMKHGYRGLDLLYGVMASILEEVTKYSEVTSPKGALSTREILE 800
A K+G +G DLL M LE +T YSE+ S G ++ + +E
Sbjct: 646 ADELEKYGLKGSDLLVAAMGVALEVLTSYSEIKSYSGKITAKSAIE 691
>pir||C69543 hypothetical protein AF2347 - Archaeoglobus fulgidus
>gi|2650749|gb|AAB91316.1| (AE001114) A. fulgidus
predicted coding region AF2347 [Archaeoglobus fulgidus]
Length = 453
Score = 178 bits (446), Expect = 3e-43
Identities = 121/398 (30%), Positives = 193/398 (48%), Gaps = 57/398 (14%)
Query: 407 FHLFNPRQLLTLIKIVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAI 466
+ LFNPRQLL ++K + + ++ E DEE YA+A+ YLS ++ K+
Sbjct: 49 YQLFNPRQLLLMVKFAEKAKRIVNEIAER------DEE----YAKAMGVYLSAIIAKHVD 98
Query: 467 YNSYVTYWNSSL-IMAPSLAVRGIAMQWNPYEISPSARWTGSWRQGIEHTFSR---SLEY 522
N T W+S +++ R +M W+ E++P + +G+ I + S+E
Sbjct: 99 RNCRGTTWDSGYEVISSMFGKRRPSMMWDHTEVNPFVKSSGTLINNINDVLNALKYSIEK 158
Query: 523 LTTALAPSGQKTLTDFTKTNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFY 582
L++ A T++++ S KF +IVTDPPY DD PY E+S+ +
Sbjct: 159 LSSTQA--------------TIEIINESTASWKPQRKFKIIVTDPPYYDDTPYGEVSEVF 204
Query: 583 YVWLKRALSDSDGKRLIPRFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDEN 642
Y+W KR + F+K + + F V T+ +D
Sbjct: 205 YIWHKRIVGH--------------LFEK----------ESKYFRNDRVETSEE--LDVGG 238
Query: 643 RKEKAVQHFENLFAQAFVAMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRA 702
++K + F NLF + + + L DDG+LV ++AH PE+W +L A R+AG IT
Sbjct: 239 NRDK--EFFNNLFIKTMQNVHDLLDDDGILVLFFAHKSPEAWYFVLEA-LRQAGFNITAT 295
Query: 703 IPLTTESSTSIVKRGKLSLDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHG 762
P+ TES+ S+V RGK S+ S+++ RK K+ I + EI EK + A K+G
Sbjct: 296 FPIHTESTESVVARGKKSIYHSLIITARKRKEEKTGIIEEILPEIEEKIYQRADELEKYG 355
Query: 763 YRGLDLLYGVMASILEEVTKYSEVTSPKGALSTREILE 800
+G DLL M LE +T YSE+ S G ++ + +E
Sbjct: 356 LKGSDLLVAAMGVALEVLTSYSEIKSYSGKITAKSAIE 393
>pir||A69543 hypothetical protein AF2345 - Archaeoglobus fulgidus
>gi|2650750|gb|AAB91317.1| (AE001114) A. fulgidus
predicted coding region AF2345 [Archaeoglobus fulgidus]
Length = 162
Score = 99.8 bits (245), Expect = 1e-19
Identities = 61/165 (36%), Positives = 91/165 (54%), Gaps = 28/165 (16%)
Query: 4 KRLIESLNFPVVEVNKKSEKEK-GPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDVDV 62
K LIE PV E++++++KEK G A+PP + + +WW RKPL+ ARA + +L+ ++
Sbjct: 2 KLLIEEF-IPVEEISEEAKKEKLGNAKPPIFSLHYWWARKPLITARAAVLGALISKE--- 57
Query: 63 SRFKSMIGLNESTPHRVNP-RIPQDLEKYFRGKK---------------------LLDPF 100
++G + + + RIP+D+ + R +LDPF
Sbjct: 58 -NLPMIVGNGDLKTNLLRILRIPKDINEGPRAHTQDPPAEYLKEAIIKTWGEIPTVLDPF 116
Query: 101 AGFGSIPLEGLRLGLDVTAVELLPVAYVFLKAVLEYPKKFGKTLV 145
AG GSIP E LRLG + AV+ PVAY+ LK LEYPKK+G L+
Sbjct: 117 AGGGSIPFEALRLGCNAVAVDYNPVAYLILKETLEYPKKYGMKLI 161
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379952070
Number of Sequences: 2977
Number of extensions: 16683773
Number of successful extensions: 44440
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 44385
Number of HSP's gapped (non-prelim): 13
length of query: 1010
length of database: 189,106,746
effective HSP length: 59
effective length of query: 951
effective length of database: 153,796,013
effective search space: 146260008363
effective search space used: 146260008363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 170 (70.6 bits)