BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0588 (PAB0588) DE:Hypothetical protein
         (1010 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75134 hypothetical protein PAB0588 - Pyrococcus abyssi (st...  2034  0.0
pir||H72310 conserved hypothetical protein - Thermotoga maritima...  1399  0.0
pir||A71080 hypothetical protein PH0905 - Pyrococcus horikoshii ...  1308  0.0
pir||H72734 hypothetical protein APE0416 - Aeropyrum pernix (str...   674  0.0
gi|11500033 Predicted DNA methylase containing a Zn-ribbon modul...   297  3e-79
pir||C69543 hypothetical protein AF2347 - Archaeoglobus fulgidus...   178  3e-43
pir||A69543 hypothetical protein AF2345 - Archaeoglobus fulgidus...   100  1e-19

>pir||F75134 hypothetical protein PAB0588 - Pyrococcus abyssi (strain Orsay)
            >gi|5458302|emb|CAB49791.1| (AJ248285) hypothetical
            protein [Pyrococcus abyssi]
            Length = 1010
            
 Score = 2034 bits (5212), Expect = 0.0
 Identities = 1010/1010 (100%), Positives = 1010/1010 (100%)

Query: 1    MGYKRLIESLNFPVVEVNKKSEKEKGPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDV 60
            MGYKRLIESLNFPVVEVNKKSEKEKGPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDV
Sbjct: 1    MGYKRLIESLNFPVVEVNKKSEKEKGPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDV 60

Query: 61   DVSRFKSMIGLNESTPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGLDVTAV 120
            DVSRFKSMIGLNESTPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGLDVTAV
Sbjct: 61   DVSRFKSMIGLNESTPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGLDVTAV 120

Query: 121  ELLPVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTW 180
            ELLPVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTW
Sbjct: 121  ELLPVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTW 180

Query: 181  EIKCPHCGRFTLAVGNYWLARVKDSKGYKRLAYMVPEGEGVRIIDLNEILGDVSRAKVKG 240
            EIKCPHCGRFTLAVGNYWLARVKDSKGYKRLAYMVPEGEGVRIIDLNEILGDVSRAKVKG
Sbjct: 181  EIKCPHCGRFTLAVGNYWLARVKDSKGYKRLAYMVPEGEGVRIIDLNEILGDVSRAKVKG 240

Query: 241  EEIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNVI 300
            EEIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNVI
Sbjct: 241  EEIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNVI 300

Query: 301  RYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDERFARQRLLVKVKVKDGDLIFEPATK 360
            RYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDERFARQRLLVKVKVKDGDLIFEPATK
Sbjct: 301  RYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDERFARQRLLVKVKVKDGDLIFEPATK 360

Query: 361  EDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRITPILSAERWFHLFNPRQLLTLIK 420
            EDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRITPILSAERWFHLFNPRQLLTLIK
Sbjct: 361  EDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRITPILSAERWFHLFNPRQLLTLIK 420

Query: 421  IVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWNSSLIM 480
            IVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWNSSLIM
Sbjct: 421  IVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWNSSLIM 480

Query: 481  APSLAVRGIAMQWNPYEISPSARWTGSWRQGIEHTFSRSLEYLTTALAPSGQKTLTDFTK 540
            APSLAVRGIAMQWNPYEISPSARWTGSWRQGIEHTFSRSLEYLTTALAPSGQKTLTDFTK
Sbjct: 481  APSLAVRGIAMQWNPYEISPSARWTGSWRQGIEHTFSRSLEYLTTALAPSGQKTLTDFTK 540

Query: 541  TNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSDSDGKRLIP 600
            TNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSDSDGKRLIP
Sbjct: 541  TNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSDSDGKRLIP 600

Query: 601  RFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDENRKEKAVQHFENLFAQAFV 660
            RFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDENRKEKAVQHFENLFAQAFV
Sbjct: 601  RFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDENRKEKAVQHFENLFAQAFV 660

Query: 661  AMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTESSTSIVKRGKLS 720
            AMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTESSTSIVKRGKLS
Sbjct: 661  AMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTESSTSIVKRGKLS 720

Query: 721  LDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHGYRGLDLLYGVMASILEEV 780
            LDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHGYRGLDLLYGVMASILEEV
Sbjct: 721  LDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHGYRGLDLLYGVMASILEEV 780

Query: 781  TKYSEVTSPKGALSTREILERHVYPATIRGIVEALADVKGRITSNEGLFYSAYKVLFGNA 840
            TKYSEVTSPKGALSTREILERHVYPATIRGIVEALADVKGRITSNEGLFYSAYKVLFGNA
Sbjct: 781  TKYSEVTSPKGALSTREILERHVYPATIRGIVEALADVKGRITSNEGLFYSAYKVLFGNA 840

Query: 841  SISPNDIVLLNLATFTNAKLLIRDKILKQVGSGKKEFRLYSPDILGERALNTRELQAFLR 900
            SISPNDIVLLNLATFTNAKLLIRDKILKQVGSGKKEFRLYSPDILGERALNTRELQAFLR
Sbjct: 841  SISPNDIVLLNLATFTNAKLLIRDKILKQVGSGKKEFRLYSPDILGERALNTRELQAFLR 900

Query: 901  ERGLNPQDPVPRNSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEEAIAMAKLVSSY 960
            ERGLNPQDPVPRNSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEEAIAMAKLVSSY
Sbjct: 901  ERGLNPQDPVPRNSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEEAIAMAKLVSSY 960

Query: 961  YKAMYSQMLSPLGVVIRADERKVEGELMKDGHYEVVLMSRLVRNLGGGVI 1010
            YKAMYSQMLSPLGVVIRADERKVEGELMKDGHYEVVLMSRLVRNLGGGVI
Sbjct: 961  YKAMYSQMLSPLGVVIRADERKVEGELMKDGHYEVVLMSRLVRNLGGGVI 1010


>pir||H72310 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
            >gi|4981526|gb|AAD36066.1|AE001760_16 (AE001760)
            conserved hypothetical protein [Thermotoga maritima]
            Length = 1008
            
 Score = 1399 bits (3582), Expect = 0.0
 Identities = 699/1016 (68%), Positives = 832/1016 (81%), Gaps = 19/1016 (1%)

Query: 4    KRLIESLNFPVVEVNKKSEKEKGPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDVDVS 63
            K  +ESL FPV EVNKKS  EKGP RPPYWEMVF+WTRKPLVGAR++IA +LLPE+VD +
Sbjct: 2    KTFLESLKFPVQEVNKKSSGEKGPGRPPYWEMVFYWTRKPLVGARSVIAGALLPENVDEN 61

Query: 64   RFKSMIGLNESTPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGLDVTAVELL 123
             FK+ + L+  TPHR NP+IP +  KYF GKKLLDPFAGFGSIPLEGLRLGLDVTAVELL
Sbjct: 62   LFKAAVRLSSPTPHRENPQIPAEFAKYFEGKKLLDPFAGFGSIPLEGLRLGLDVTAVELL 121

Query: 124  PVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTWEIK 183
            P  Y+FLKAVLEYPKKFGK+LV+DVERWG WITEQLKNDPEIRELYDDDVAVYIGTWEI+
Sbjct: 122  PTTYIFLKAVLEYPKKFGKSLVKDVERWGEWITEQLKNDPEIRELYDDDVAVYIGTWEIR 181

Query: 184  CPHCGRFTLAVGNYWLARVKDSKGYKRLAYMVPEGEG----VRIIDLNEILGDVSRAKVK 239
            CPHCGR+T A+GN+WLARVKD KGYKRLAYM PE +G    +R+IDLNEIL D+S+A V 
Sbjct: 182  CPHCGRWTPAIGNFWLARVKDGKGYKRLAYMKPERKGDEIEIRVIDLNEILDDISKANVD 241

Query: 240  GEEIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNV 299
            G EI+FEG+ +V+ V +AV +GK+K+ DV+I G+ VIF VPS NIE+R+ QLTCL CGNV
Sbjct: 242  GNEIIFEGENYVKTVEEAVRDGKLKQSDVKIDGNTVIFEVPSANIESRRDQLTCLMCGNV 301

Query: 300  IRYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDERFARQRLLVKVKVKDGDLIFEPAT 359
            I+YADENG H+ +   G   DFYVKFAL+KYHEGDERFARQRLLVKVKVKDGDLIFEPAT
Sbjct: 302  IKYADENGNHHMKLKNG---DFYVKFALRKYHEGDERFARQRLLVKVKVKDGDLIFEPAT 358

Query: 360  KEDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRITPILSAERWFHLFNPRQLLTLI 419
            KED+EKL +AKEKVRE++E+ D DVP+E IPLYENRRITPILSAE+W+  FNPRQLLTLI
Sbjct: 359  KEDSEKLWKAKEKVREMLEKGDLDVPSEAIPLYENRRITPILSAEKWYQFFNPRQLLTLI 418

Query: 420  KIVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWNSSLI 479
            KIVRLIREVG+KVEEEK+ EGW++ERAFEYAEAVATYLS  ++KYA YNS VT W+S+  
Sbjct: 419  KIVRLIREVGRKVEEEKIAEGWNKERAFEYAEAVATYLSTAMLKYAYYNSIVTRWDSTWW 478

Query: 480  -MAPSLAVRGIAMQWNPYEISPSARWTGSWRQGIEHTFS--RSLEYLTTALAPSGQKTLT 536
             +  +++ RGIAM WN  E SP   W  S+   I+   +  R ++YLT+AL+ S Q+TL 
Sbjct: 479  KIGETMSTRGIAMNWNWTE-SP---WFSSFGGMIKTLLAILRGVKYLTSALS-SSQRTLA 533

Query: 537  DFTKTNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSDSDGK 596
            DFT+ N+VKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSD +  
Sbjct: 534  DFTE-NSVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSDVENG 592

Query: 597  RLIPRFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDENRKEKAVQHFENLFA 656
            +LIPRFHK AFFK++G KWVEIKTQWQEFAK+EVSTNPGRFM+DEN+KEKAVQHFENLF+
Sbjct: 593  KLIPRFHKEAFFKRIGPKWVEIKTQWQEFAKKEVSTNPGRFMEDENKKEKAVQHFENLFS 652

Query: 657  QAFVAMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTESSTSIVKR 716
            QAFVAMREHLKDDG+LVTYYAHTDP SW+NL+ AGWRRA LQITRAIPLTTES TSIV R
Sbjct: 653  QAFVAMREHLKDDGVLVTYYAHTDPGSWINLIEAGWRRARLQITRAIPLTTESETSIVSR 712

Query: 717  GKLSLDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHGYRGLDLLYGVMASI 776
            GK+SLDTSIV VWRK K+   V+IS L EEI  KA  SA+ ++++GY GLDLLYGVMA+ 
Sbjct: 713  GKMSLDTSIVAVWRKQKEEKTVQISTLKEEIERKAKSSAREFIEYGYEGLDLLYGVMAAA 772

Query: 777  LEEVTKYSEVTSPKGALSTREILERHVYPATIRGIVEALADVKGRITSNEG--LFYSAYK 834
            LEEVTKY E++S KG L+T EIL  +VYPATIRGIV A+A+++G  T + G  +FY+AYK
Sbjct: 773  LEEVTKYREISSLKGPLTTEEILNEYVYPATIRGIVNAIAEIEGTGTLHSGTAMFYTAYK 832

Query: 835  VLFGNASISPNDIVLLNLATFTNAKLLIRDKILKQV-GSGKKEFRLYSPDILGERALNTR 893
            +LFGNAS+S NDIVLL LAT T+   LI   +LK+   S  KE+ LY+PD+LG++AL+T+
Sbjct: 833  ILFGNASLSANDIVLLRLATSTDPSELISSGVLKEKRSSSSKEYTLYTPDLLGKKALDTK 892

Query: 894  ELQAFLRERGLNPQDPVPRNSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEEAIAM 953
            E Q FL E+ L+P +P P+NSVDVL LLEYYSLLG   +KE +E L+K  A  VEEA+ +
Sbjct: 893  EFQKFLHEKKLDPVEPKPKNSVDVLQLLEYYSLLGRSRVKEEIEKLRKMWAGEVEEALFI 952

Query: 954  AKLVSSYYKAMYSQMLSPLGVVIRADERKVEGELMKDGHYEVVLMSRLVRNLGGGV 1009
            A+LVS YY  +Y + + P+  +      +++ EL KDG  EVVLM RL+  +GG V
Sbjct: 953  ARLVSEYYAEIYIRKIDPVRRMKEEFASEIDRELEKDGFLEVVLMRRLLGYVGGAV 1008


>pir||A71080 hypothetical protein PH0905 - Pyrococcus horikoshii
            >gi|3257316|dbj|BAA29999.1| (AP000004) 996aa long
            hypothetical protein [Pyrococcus horikoshii]
            Length = 996
            
 Score = 1308 bits (3348), Expect = 0.0
 Identities = 678/1021 (66%), Positives = 805/1021 (78%), Gaps = 41/1021 (4%)

Query: 4    KRLIESLNFPVVEVNKKSEKEKGPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDVDVS 63
            KRLIES NFP+ EVN+KS KEKGP RPPYWEMVFWWTRKPL+GARAIIAASLLPED DV+
Sbjct: 3    KRLIESPNFPIEEVNEKSLKEKGPGRPPYWEMVFWWTRKPLIGARAIIAASLLPEDYDVN 62

Query: 64   RFKSMIGLNESTPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGLDVTAVELL 123
            +FKS I L+E   H+ NP      E  FRGKKLLDPFAGFGSIPLEGLRLGLDVTAVELL
Sbjct: 63   KFKSKIRLSEG--HKANP------EPMFRGKKLLDPFAGFGSIPLEGLRLGLDVTAVELL 114

Query: 124  PVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTWEIK 183
            P AY+FLKAVLEYPKKFG+ L+RDVE+WGNWITEQLKNDPEI+ELYD+DVAVYIGTWE+K
Sbjct: 115  PTAYIFLKAVLEYPKKFGRQLIRDVEKWGNWITEQLKNDPEIKELYDEDVAVYIGTWEVK 174

Query: 184  CPHCGRFTLAVGNYWLARVKDSKGYKRLAYMV--PEGEGVRIIDLNEILGDVSRAKVKGE 241
            CPHCGR+T AVGN+WLARVKD K YKRLAYM   P GE VRIIDLNEI  DVS AKV  E
Sbjct: 175  CPHCGRWTPAVGNFWLARVKDGKNYKRLAYMKIDPNGE-VRIIDLNEIFADVSGAKVSTE 233

Query: 242  --EIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNV 299
              EI+ EGKG+VEKV+KA+E GK+KE DVEI+GDKV+F+VP PNIE RKSQL CL+CGNV
Sbjct: 234  RGEIILEGKGYVEKVKKAIERGKLKEEDVEIEGDKVVFKVPRPNIEGRKSQLVCLSCGNV 293

Query: 300  IRYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDERFARQRLLVKVKVKDGDLIFEPAT 359
            I+YADE G HY +KP+G  VDFYVKFAL+KYHEG+ERFARQRLLVKVKVK+ DLIFEPAT
Sbjct: 294  IKYADEEGNHYIEKPKGKNVDFYVKFALRKYHEGNERFARQRLLVKVKVKNKDLIFEPAT 353

Query: 360  KEDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRITPILSA-ERWFHLFNPRQLLTL 418
            +EDNEKL +AKEKV+E++E+KDPDVPTE++  Y    +  I      W +LFNPRQLLTL
Sbjct: 354  REDNEKLWKAKEKVKEMVEKKDPDVPTEKMQPYGGATLGDIYKVFISWNNLFNPRQLLTL 413

Query: 419  IKIVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWNSSL 478
            IKIVRLIREVGKKVEEEK+ EGW +ERAFEYAEAVATYLS+VL++   +NS  T W S  
Sbjct: 414  IKIVRLIREVGKKVEEEKIAEGWSKERAFEYAEAVATYLSIVLVRLMNFNSICTSWYSGS 473

Query: 479  IMA----PSLAVRGIAMQWN--PYEISPSARWTGSWRQGIEHTFSRSLEYLTTALAPSGQ 532
            ++      SL+ RGIAM WN     I      + S+R+  E    R+L+YLT+AL+ S Q
Sbjct: 474  LLTNKIQSSLSFRGIAMVWNWGDTNILYEEGNSYSFRKSTESVL-RALQYLTSALS-SSQ 531

Query: 533  KTLTDFTKTNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSD 592
            KTL DFT  N++KVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSD
Sbjct: 532  KTLADFT-GNSIKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFYYVWLKRALSD 590

Query: 593  SDGKRLIPRFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRF--MDDENRKEKAVQH 650
             +  +L+PRFH+ AFFK++G KWVEIKTQWQEFAK+EVS  P RF     +  KE A +H
Sbjct: 591  VENGKLVPRFHREAFFKRIGPKWVEIKTQWQEFAKKEVSMYPARFDGKSGKEAKEIASKH 650

Query: 651  FENLFAQAFVAMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTESS 710
            FENLF+QAFVAMREHLKDDG+LVTYYAHTD ESW+ L+ AGWR+A LQ+TRA PL TESS
Sbjct: 651  FENLFSQAFVAMREHLKDDGILVTYYAHTDLESWITLIEAGWRKAKLQVTRAFPLGTESS 710

Query: 711  TSIVKRGKLSLDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHGYRGLDLLY 770
              +  RGK++LDTS+VVVWRK  +   V +  + E ++E  ++SAK ++ HGY  L+LLY
Sbjct: 711  QRVTARGKMALDTSVVVVWRKRNEEKEVWVGDIEETLTEVGMKSAKEFISHGYHRLNLLY 770

Query: 771  GVMASILEEVTKYSEVTSPKGALSTREILERHVYPATIRGIVEALA-DVKGRITSNEGLF 829
            GVMAS+L EVTKY  V SPKG LS REILE++VYPATIRGIV A+  DVK    S EG+F
Sbjct: 771  GVMASVLSEVTKYKAVKSPKGELSVREILEKYVYPATIRGIVGAITEDVKAETLSREGIF 830

Query: 830  YSAYKVLFGNASISPNDIVLLNLATFTNAKLLIRDKILKQVGSGKKEFRLYSPDILGERA 889
            Y+AYKVLFGNA +SPNDI+LLNLAT  ++  L + +ILK+V S   E  LYSPD+LG++A
Sbjct: 831  YTAYKVLFGNAKVSPNDIILLNLATAVDSSSLQKLRILKRVNS---EITLYSPDLLGKKA 887

Query: 890  LNTRELQAFLRERGLNPQDPVPRNSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEE 949
            L+ RELQ FL+ERG        RNS+DVLH+LE+ SLLG+  ++E +E LK +    V E
Sbjct: 888  LDARELQKFLKERGAEKY----RNSIDVLHVLEHASLLGASKVRETIEELKSKME--VNE 941

Query: 950  AIAMAKLVSSYYKAMYSQMLSPLGVVIRADERKVEGELMKDGHYEVVLMSRLVRNLGGGV 1009
            AI++AKLV+SYYK +YS     LG+    DE+++   L KDG YEV+LM RLV+ + G +
Sbjct: 942  AISIAKLVASYYKRIYS---LTLGI---KDEKEITKRLEKDGLYEVILMERLVKAVRGEM 995

Query: 1010 I 1010
            +
Sbjct: 996  L 996


>pir||H72734 hypothetical protein APE0416 - Aeropyrum pernix (strain K1)
           >gi|5104056|dbj|BAA79372.1| (AP000059) 1007aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 1007
           
 Score =  674 bits (1720), Expect = 0.0
 Identities = 440/1074 (40%), Positives = 578/1074 (52%), Gaps = 212/1074 (19%)

Query: 4   KRLIESLNFPVVEVNKKSEKEK-GPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDVDV 62
           KR IE+  FP+  +N+ S +EK G  RPPYWEMVFWWTRKPL GARA+IA +LLP D D 
Sbjct: 10  KRFIETSRFPISLINEVSAREKQGGGRPPYWEMVFWWTRKPLAGARAVIAGALLPGDYDK 69

Query: 63  SRFKSMIGLNES-TPHRVNPRIPQDLEKYFRGKKLLDPFAGFGSIPLEGLRLGL-DVTAV 120
           + F S + L     PHR+NP +P+ +++ F+  KLLDPFAGFGSIPLE +RLG+ +V AV
Sbjct: 70  TGFLSELRLIAGKVPHRLNPILPRGVKERFKQAKLLDPFAGFGSIPLEAIRLGVGEVVAV 129

Query: 121 ELLPVAYVFLKAVLEYPKKF--------------------------------GKT----- 143
           E LP AY+FLKA+LEYPK++                                GKT     
Sbjct: 130 EFLPTAYIFLKAMLEYPKEYSEARVRVLGREIRELELDKAVSGFIREKSIFDGKTYEIPA 189

Query: 144 LVRDVERWGNWITEQLKNDPEIRELYDDDVAVYIGTWEIKCPHCGRFTLAVGNYWLARVK 203
           L+ DV RWG WIT++L  DP+I+ELYD+D AVYIGTWE+KCP CGR+T  VGN+WLA+VK
Sbjct: 190 LIYDVARWGRWITKRLGEDPDIKELYDEDAAVYIGTWEVKCPVCGRYTPLVGNWWLAKVK 249

Query: 204 DSKGYKRLAYMVPEGEGVRIIDLNEILGDVSRAKVKGEEIVFEGKGFVEKVRKAVEEGKI 263
                KR AYM PE EG +I                G +I+               EGK 
Sbjct: 250 G----KRYAYMKPETEGNKI----------------GIKII---------------EGKT 274

Query: 264 KEGDVEIKGDKVIFRVPSPNIEARKSQLTCLACGNVIRYAD-ENGRHYTQKPEGV----- 317
                           PSPN+  R     CL CG+ I Y D   GR Y  K E       
Sbjct: 275 GGS-------------PSPNVAGRPELAECLLCGSRITYIDPRTGRTYRTKNEVANTLIR 321

Query: 318 -KVDFYVKFALKKYHEGDERF--------------ARQRLLVKVKVKDGDLIFEPATKED 362
            +++FY K ALK +++  E +              AR RLLVKVK+ + DL FEPAT  D
Sbjct: 322 SRLEFYPKHALKDWNKKLEEYLEGGIALEELRNSLARPRLLVKVKIANKDLKFEPATDRD 381

Query: 363 NEKLLRAKEKVRELIERKDPDVPTEQIPLYENRRI-TPILSAERWFHLFNPRQLLTLIKI 421
           +EKL +A EK+R+L    DPD+PTE IP Y+NR + T     ++WF LFNPRQLLTL+K+
Sbjct: 382 DEKLWKALEKLRQLWG--DPDIPTEPIPSYDNRNLMTYTWGNDKWFKLFNPRQLLTLVKL 439

Query: 422 VRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAIYNSYVTYWN-SSLIM 480
           V+LIRE GK++EEEKL+EGW  E A +YAEA+ TYL++  ++   YNS VT W   S ++
Sbjct: 440 VKLIRETGKRIEEEKLREGWSREEAHKYAEAITTYLAIAFLRSMTYNSLVTRWKPDSWVL 499

Query: 481 ---APSLAVRGIAMQWNPYEISPSARWTGSW--RQGIEHTFSRSLEYLTTAL-----APS 530
                SL+ RGIAM WN         W  +W   + I + +  S+E +  AL     A S
Sbjct: 500 NKVQDSLSTRGIAMTWN---------WGDTWLAHEDISYNYFDSVETVVDALLYLVSAVS 550

Query: 531 GQKTLTDFTKTNTVKVLQGDATSLNL--GEKFDVIVTDPPYADDVPYTELSDFYYVWLKR 588
           G         +  V+VL  DAT L+   GE+FDVIVTDPPY DDVPY ELSDFYYVWLKR
Sbjct: 551 GS--------SGRVRVLLDDATVLSKLEGERFDVIVTDPPYRDDVPYAELSDFYYVWLKR 602

Query: 589 ALSDSDGKRLIPRFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDENRKEKAV 648
           +LS   G  L  RFH  A             TQW+ FA  E+S N GR      R+  A 
Sbjct: 603 SLS---GDGLALRFHSDALVSN---------TQWEGFALNEISYNEGRLRYFGVRE--AE 648

Query: 649 QHFENLFAQAFVAMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRAIPLTTE 708
            ++E L   AF  + E LKDDGL+VTY+AH+ PE+W+ L+ AGWRRAGL++TRA    TE
Sbjct: 649 DYYERLMGMAFKRLSELLKDDGLIVTYFAHSSPEAWIELVEAGWRRAGLRVTRAWAFATE 708

Query: 709 SSTSIVKRGKLSLDTSIVVVWRKSKKIDRVEISRLNE--EISEKAIESAKL----YMKHG 762
           S   +  RGK +L++SIVVVWRK  K    +  R+ E  ++  +A+E+A+       K G
Sbjct: 709 SPQRVTARGKTALESSIVVVWRKRGK----DGGRVGEYVDVYREALENARRARDEAFKSG 764

Query: 763 YRGLDLLYGVMASILEEVTKYSEVTSPKGALSTREILERHVYPATIRGIVEALADVKGRI 822
               D+    M   L   T Y  V      L++R+++      AT       +A+    I
Sbjct: 765 LTDSDMFLSTMLGALSTFTSYDRVVHFGRGLTSRDVVRESYAIAT-----RVIANATETI 819

Query: 823 TSNEGLFYSAYKVLFGNAS-----------------ISPNDIVLLNLA------------ 853
            S E LFY A K +F   S                 +S +D+++L+              
Sbjct: 820 RSPEALFYLASKAIFRRYSRPGGQTTLSSAPAEPIVLSSHDVIILSYGFLRSVERPEKEG 879

Query: 854 --TFTNAKLLIRDKILKQVGSGK-KEFRLYSPDILGERALNTRELQAFLRERGLNP--QD 908
             TF NA ++   + +K     K K F L  P           EL+  L  RG+NP   D
Sbjct: 880 YKTFVNAGIIKSAEEVKGANVAKQKAFALLEP-----LDSTIEELKKLLGVRGVNPIKMD 934

Query: 909 PVPR--NSVDVLHLLEYYSLLGSDVLKERVEALKKRHAPLVEEAIAMAKLVSSY 960
              R  NS+D LHLLEYY+  G    K   + L  ++   V EA+ +AK++SSY
Sbjct: 935 AERRSFNSIDALHLLEYYAKQGRSEFKTTYQILYSKYPKQVREAVEVAKVISSY 988


>gi|11500033 Predicted DNA methylase containing a Zn-ribbon module
           [Archaeoglobus fulgidus]
           Length = 751
           
 Score =  297 bits (753), Expect = 3e-79
 Identities = 246/826 (29%), Positives = 376/826 (44%), Gaps = 165/826 (19%)

Query: 4   KRLIESLNFPVVEVNKKSEKEK-GPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDVDV 62
           K LIE    PV E++++++KEK G A+PP + + +WW RKPL+ ARA +  +L+ ++   
Sbjct: 2   KLLIEEF-IPVEEISEEAKKEKLGNAKPPIFSLHYWWARKPLITARAAVLGALISKE--- 57

Query: 63  SRFKSMIGLNESTPHRVNP-RIPQDLEKYFRGKK---------------------LLDPF 100
                ++G  +   + +   RIP+D+ +  R                        +LDPF
Sbjct: 58  -NLPMIVGNGDLKTNLLRILRIPKDINEGPRAHTQDPPAEYLKEAIIKTWGEIPTVLDPF 116

Query: 101 AGFGSIPLEGLRLGLDVTAVELLPVAYVFLKAVLEYPKKFGKTLVRDVERWGNWITEQLK 160
           AG GSIP E LRLG +  AV+  PVAY+ LK  LEYPKK+G  L+ DV+++   I  +LK
Sbjct: 117 AGGGSIPFEALRLGCNAVAVDYNPVAYLILKETLEYPKKYGMKLIYDVKKYAEQIFRELK 176

Query: 161 NDPEIRELY----DDDVAVYIGTWEIKCPHCGRFTLAVGNYWLARVKDSKGYKRLAYMVP 216
              E+   Y    + DVA YI +W +KCP CG  T  VG++ LA+ K  K    LAY   
Sbjct: 177 E--ELGRFYPKHDEKDVAAYIFSWVVKCPQCGFETPLVGSWQLAKTKRGKEV-YLAY--- 230

Query: 217 EGEGVRIIDLNEILGDVSRAKVKGEEIVFEGKGFVEKVRKAVEEGKIKEGDVEIKGDKVI 276
                               +V+G+E+  E           ++EG   EG+V  +GD V 
Sbjct: 231 --------------------EVEGDELKLE-----------IKEGMAPEGNVS-RGDGV- 257

Query: 277 FRVPSPNIEARKSQLTCLACGNVIRYADENGRHYTQKPEGVKVDFYVKFALKKYHEGDER 336
                           CL CG  I     N     Q  E  K        L     G E 
Sbjct: 258 ----------------CLKCGAHI----PNDEVVKQIRENEKERMLAVALLNSGRGGKEY 297

Query: 337 FARQRLLVKVKVKDGDL-IFEPATKEDNEKLLRAKEKVRELIERKDPDVPTEQIPLYENR 395
                        D DL  FE A KE  +   R           ++  +P  ++P   + 
Sbjct: 298 DV---------PSDEDLKAFEEAEKELKKSWFRF---------YREGLIPDGEMP--RDY 337

Query: 396 RITPILSAERWFHLFNPRQLLTLIKIVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVAT 455
           R T  L   + + LFNPRQLL ++K     + +  ++           ER  EYA+A+  
Sbjct: 338 RFT--LYLPKHYQLFNPRQLLLMVKFAEKAKRIVNEI----------AERDEEYAKAMGV 385

Query: 456 YLSMVLMKYAIYNSYVTYWNSSL-IMAPSLAVRGIAMQWNPYEISPSARWTGSWRQGIEH 514
           YLS ++ K+   N   T W+S   +++     R  +M W+  E++P  + +G+    I  
Sbjct: 386 YLSAIIAKHVDRNCRGTTWDSGYEVISSMFGKRRPSMMWDHTEVNPFVKSSGTLINNIND 445

Query: 515 TFSRSLEYLTTALAPSGQKTLTDFTKTNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVP 574
             + +L+Y    L+          +   T++++     S     KF +IVTDPPY DD P
Sbjct: 446 VLN-ALKYSIEKLS----------STQATIEIINESTASWKPQRKFKIIVTDPPYYDDTP 494

Query: 575 YTELSDFYYVWLKRALSDSDGKRLIPRFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNP 634
           Y E+S+ +Y+W KR +                 F+K          + + F    V T+ 
Sbjct: 495 YGEVSEVFYIWHKRIVGH--------------LFEK----------ESKYFRNDRVETS- 529

Query: 635 GRFMDDENRKEKAVQHFENLFAQAFVAMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRR 694
              +D    ++K  + F NLF +    + + L DDG+LV ++AH  PE+W  +L A  R+
Sbjct: 530 -EELDVGGNRDK--EFFNNLFIKTMQNVHDLLDDDGILVLFFAHKSPEAWYFVLEA-LRQ 585

Query: 695 AGLQITRAIPLTTESSTSIVKRGKLSLDTSIVVVWRKSKKIDRVEISRLNEEISEKAIES 754
           AG  IT   P+ TES+ S+V RGK S+  S+++  RK K+     I  +  EI EK  + 
Sbjct: 586 AGFNITATFPIHTESTESVVARGKKSIYHSLIITARKRKEEKTGIIEEILPEIEEKIYQR 645

Query: 755 AKLYMKHGYRGLDLLYGVMASILEEVTKYSEVTSPKGALSTREILE 800
           A    K+G +G DLL   M   LE +T YSE+ S  G ++ +  +E
Sbjct: 646 ADELEKYGLKGSDLLVAAMGVALEVLTSYSEIKSYSGKITAKSAIE 691


>pir||C69543 hypothetical protein AF2347 - Archaeoglobus fulgidus
           >gi|2650749|gb|AAB91316.1| (AE001114) A. fulgidus
           predicted coding region AF2347 [Archaeoglobus fulgidus]
           Length = 453
           
 Score =  178 bits (446), Expect = 3e-43
 Identities = 121/398 (30%), Positives = 193/398 (48%), Gaps = 57/398 (14%)

Query: 407 FHLFNPRQLLTLIKIVRLIREVGKKVEEEKLKEGWDEERAFEYAEAVATYLSMVLMKYAI 466
           + LFNPRQLL ++K     + +  ++ E       DEE    YA+A+  YLS ++ K+  
Sbjct: 49  YQLFNPRQLLLMVKFAEKAKRIVNEIAER------DEE----YAKAMGVYLSAIIAKHVD 98

Query: 467 YNSYVTYWNSSL-IMAPSLAVRGIAMQWNPYEISPSARWTGSWRQGIEHTFSR---SLEY 522
            N   T W+S   +++     R  +M W+  E++P  + +G+    I    +    S+E 
Sbjct: 99  RNCRGTTWDSGYEVISSMFGKRRPSMMWDHTEVNPFVKSSGTLINNINDVLNALKYSIEK 158

Query: 523 LTTALAPSGQKTLTDFTKTNTVKVLQGDATSLNLGEKFDVIVTDPPYADDVPYTELSDFY 582
           L++  A              T++++     S     KF +IVTDPPY DD PY E+S+ +
Sbjct: 159 LSSTQA--------------TIEIINESTASWKPQRKFKIIVTDPPYYDDTPYGEVSEVF 204

Query: 583 YVWLKRALSDSDGKRLIPRFHKTAFFKKVGAKWVEIKTQWQEFAKREVSTNPGRFMDDEN 642
           Y+W KR +                 F+K          + + F    V T+    +D   
Sbjct: 205 YIWHKRIVGH--------------LFEK----------ESKYFRNDRVETSEE--LDVGG 238

Query: 643 RKEKAVQHFENLFAQAFVAMREHLKDDGLLVTYYAHTDPESWLNLLNAGWRRAGLQITRA 702
            ++K  + F NLF +    + + L DDG+LV ++AH  PE+W  +L A  R+AG  IT  
Sbjct: 239 NRDK--EFFNNLFIKTMQNVHDLLDDDGILVLFFAHKSPEAWYFVLEA-LRQAGFNITAT 295

Query: 703 IPLTTESSTSIVKRGKLSLDTSIVVVWRKSKKIDRVEISRLNEEISEKAIESAKLYMKHG 762
            P+ TES+ S+V RGK S+  S+++  RK K+     I  +  EI EK  + A    K+G
Sbjct: 296 FPIHTESTESVVARGKKSIYHSLIITARKRKEEKTGIIEEILPEIEEKIYQRADELEKYG 355

Query: 763 YRGLDLLYGVMASILEEVTKYSEVTSPKGALSTREILE 800
            +G DLL   M   LE +T YSE+ S  G ++ +  +E
Sbjct: 356 LKGSDLLVAAMGVALEVLTSYSEIKSYSGKITAKSAIE 393


>pir||A69543 hypothetical protein AF2345 - Archaeoglobus fulgidus
           >gi|2650750|gb|AAB91317.1| (AE001114) A. fulgidus
           predicted coding region AF2345 [Archaeoglobus fulgidus]
           Length = 162
           
 Score = 99.8 bits (245), Expect = 1e-19
 Identities = 61/165 (36%), Positives = 91/165 (54%), Gaps = 28/165 (16%)

Query: 4   KRLIESLNFPVVEVNKKSEKEK-GPARPPYWEMVFWWTRKPLVGARAIIAASLLPEDVDV 62
           K LIE    PV E++++++KEK G A+PP + + +WW RKPL+ ARA +  +L+ ++   
Sbjct: 2   KLLIEEF-IPVEEISEEAKKEKLGNAKPPIFSLHYWWARKPLITARAAVLGALISKE--- 57

Query: 63  SRFKSMIGLNESTPHRVNP-RIPQDLEKYFRGKK---------------------LLDPF 100
                ++G  +   + +   RIP+D+ +  R                        +LDPF
Sbjct: 58  -NLPMIVGNGDLKTNLLRILRIPKDINEGPRAHTQDPPAEYLKEAIIKTWGEIPTVLDPF 116

Query: 101 AGFGSIPLEGLRLGLDVTAVELLPVAYVFLKAVLEYPKKFGKTLV 145
           AG GSIP E LRLG +  AV+  PVAY+ LK  LEYPKK+G  L+
Sbjct: 117 AGGGSIPFEALRLGCNAVAVDYNPVAYLILKETLEYPKKYGMKLI 161


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.137    0.400 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379952070
Number of Sequences: 2977
Number of extensions: 16683773
Number of successful extensions: 44440
Number of sequences better than 1.0e-10: 7
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 44385
Number of HSP's gapped (non-prelim): 13
length of query: 1010
length of database: 189,106,746
effective HSP length: 59
effective length of query: 951
effective length of database: 153,796,013
effective search space: 146260008363
effective search space used: 146260008363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 170 (70.6 bits)