BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0590 (PAB0590) DE:Hypothetical protein
         (153 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75134 hypothetical protein PAB0590 - Pyrococcus abyssi (st...   316  9e-86
pir||E71079 hypothetical protein PH0901 - Pyrococcus horikoshii ...   172  2e-42
pir||B72311 conserved hypothetical protein - Thermotoga maritima...   166  2e-40

>pir||H75134 hypothetical protein PAB0590 - Pyrococcus abyssi (strain Orsay)
           >gi|5458304|emb|CAB49793.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 153
           
 Score =  316 bits (801), Expect = 9e-86
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MRGMSEGVMYMVKLKYIDKAKLPVRREQKLAEFLPVFLTEGQKVPGRVEARTRVYLPEFL 60
           MRGMSEGVMYMVKLKYIDKAKLPVRREQKLAEFLPVFLTEGQKVPGRVEARTRVYLPEFL
Sbjct: 1   MRGMSEGVMYMVKLKYIDKAKLPVRREQKLAEFLPVFLTEGQKVPGRVEARTRVYLPEFL 60

Query: 61  EFAKDLGWEVKGKKRITLTTHDDYAYLRLLVYGVVMSATKDPVKWDYLKDHVLSMESIPL 120
           EFAKDLGWEVKGKKRITLTTHDDYAYLRLLVYGVVMSATKDPVKWDYLKDHVLSMESIPL
Sbjct: 61  EFAKDLGWEVKGKKRITLTTHDDYAYLRLLVYGVVMSATKDPVKWDYLKDHVLSMESIPL 120

Query: 121 RYWASKFKNVYWKYKNRGKLLYLARRFLEVETV 153
           RYWASKFKNVYWKYKNRGKLLYLARRFLEVETV
Sbjct: 121 RYWASKFKNVYWKYKNRGKLLYLARRFLEVETV 153


>pir||E71079 hypothetical protein PH0901 - Pyrococcus horikoshii
           >gi|3257312|dbj|BAA29995.1| (AP000004) 142aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 142
           
 Score =  172 bits (431), Expect = 2e-42
 Identities = 82/147 (55%), Positives = 110/147 (74%), Gaps = 6/147 (4%)

Query: 7   GVMYMVKLKYIDKAKLPVRREQKLAEFLPVFLTEGQKVPGRVEARTRVYLPEFLEFAKDL 66
           G+ Y++KLKYI   +L V REQKLAEF P+F        G+VEA+ RV+LPE+ +FAK L
Sbjct: 2   GMKYLIKLKYIKPVQLAVNREQKLAEFYPIF---EDGTLGKVEAKARVFLPEYSDFAKGL 58

Query: 67  GWEVKGKKRITLTTHDDYAYLRLLVYGVVMSATKDPVKWDYLKDHVLSMESIPLRYWASK 126
           G+EVK ++   +TT +DYAYLR ++YGVVM   ++P  W+ L++ VL ME I LRYWASK
Sbjct: 59  GFEVKKRR---MTTENDYAYLRAMIYGVVMGVLRNPGDWERLEERVLEMEPIELRYWASK 115

Query: 127 FKNVYWKYKNRGKLLYLARRFLEVETV 153
           F+NVYWKYKN  +L++LARRF+EVE +
Sbjct: 116 FRNVYWKYKNMRRLMFLARRFMEVEMI 142


>pir||B72311 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981528|gb|AAD36068.1|AE001760_18 (AE001760)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 169
           
 Score =  166 bits (415), Expect = 2e-40
 Identities = 82/163 (50%), Positives = 110/163 (67%), Gaps = 15/163 (9%)

Query: 4   MSEGVMYMVKLKYIDKAKLPVRREQKLAEFLPVFLT----EGQKVPGRVEARTRVYLPEF 59
           M+  + Y + LKY+ K+ LPV+R QKLAEF+PVF+     + +++PG+ EAR +V+LPEF
Sbjct: 1   MNSAIEYRISLKYVKKSTLPVKRTQKLAEFVPVFIAGKNGKEEQIPGKAEARAKVFLPEF 60

Query: 60  LEFAKDLG-----------WEVKGKKRITLTTHDDYAYLRLLVYGVVMSATKDPVKWDYL 108
           L FAK +G            E    +++ L   DDYAYLRL++YGV+MS  K+PV+W YL
Sbjct: 61  LNFAKKVGAIHDEQISLFQMENDRSRKLVLKVSDDYAYLRLMIYGVLMSVLKNPVEWGYL 120

Query: 109 KDHVLSMESIPLRYWASKFKNVYWKYKNRGKLLYLARRFLEVE 151
           +D VLSME + LR+W SK K  +WK KNR  L YLARR LEVE
Sbjct: 121 EDLVLSMEPLTLRFWGSKIKYTFWKAKNRRVLNYLARRILEVE 163


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.140    0.422 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54020040
Number of Sequences: 2977
Number of extensions: 2062255
Number of successful extensions: 4466
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4457
Number of HSP's gapped (non-prelim): 3
length of query: 153
length of database: 189,106,746
effective HSP length: 51
effective length of query: 102
effective length of database: 158,583,909
effective search space: 16175558718
effective search space used: 16175558718
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 162 (67.5 bits)