BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0591 (PAB0591) DE:PUTATIVE DEAH ATP-DEPENDENT HELICASE
(973 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75135 probable DEAH ATP-dependent helicase PAB0591 - Pyroc... 1921 0.0
pir||D71079 hypothetical protein PH0900 - Pyrococcus horikoshii ... 834 0.0
pir||D72308 conserved hypothetical protein - Thermotoga maritima... 832 0.0
pir||E72734 hypothetical protein APE0413 - Aeropyrum pernix (str... 305 2e-81
gi|11499927 ATP-dependent RNA helicase HepA, putative [Archaeogl... 232 1e-59
gi|10803646 ORF H1186 [Halobacterium sp. NRC-1] >gi|7484100|pir|... 209 1e-52
sp|P54509|YQHH_BACSU HYPOTHETICAL HELICASE IN SINI-GCVT INTERGEN... 178 3e-43
dbj|BAB06536.1| (AP001516) helicase (Snf2/Rad54 family) [Bacillu... 175 2e-42
pir||T17395 probable DEAH ATP-dependent helicase - Dichelobacter... 166 8e-40
gi|10957432 ATP-dependent helicase HepA [Deinococcus radiodurans... 162 2e-38
dbj|BAB04688.1| (AP001510) SNF2 helicase [Bacillus halodurans] 138 3e-31
pir||H82068 RNA polymerase-associated protein HepA VC2506 [impor... 132 2e-29
sp|P23852|HEPA_ECOLI RNA POLYMERASE ASSOCIATED PROTEIN (ATP-DEPE... 117 6e-25
pir||G83231 RNA helicase HepA PA3308 [imported] - Pseudomonas ae... 115 3e-24
emb|CAA38617.1| (X54847) unnamed protein product [Escherichia coli] 93 1e-17
pir||S15944 hypothetical protein (polB 3' region) - Escherichia ... 93 1e-17
pir||S40575 hypothetical protein - Escherichia coli >gi|216479|d... 93 1e-17
pir||A41878 helicase homolog hepA - Escherichia coli (fragment) 93 1e-17
pir||T40879 probable helicase - fission yeast (Schizosaccharomyc... 91 5e-17
gi|11499053 ATP-dependent RNA helicase, putative [Archaeoglobus ... 83 1e-14
gb|AAF52824.1| (AE003626) CG5899 gene product [Drosophila melano... 81 5e-14
gi|6321275 DNA-dependent ATPase; Rad54p [Saccharomyces cerevisia... 79 2e-13
gb|AAB95091.2| (U45025) 89B helicase [Drosophila melanogaster] 75 5e-12
gb|AAF55260.1| (AE003711) Hel89B gene product [Drosophila melano... 75 5e-12
pir||T45606 hypothetical protein F13G24.10 - Arabidopsis thalian... 72 3e-11
dbj|BAB09945.1| (AB005249) contains similarity to HepA-related p... 72 3e-11
emb|CAC12619.1| (AL445067) RNA helicase (RIG-I) related protein ... 71 6e-11
>pir||A75135 probable DEAH ATP-dependent helicase PAB0591 - Pyrococcus abyssi
(strain Orsay) >gi|5458305|emb|CAB49794.1| (AJ248285)
PUTATIVE DEAH ATP-DEPENDENT HELICASE [Pyrococcus abyssi]
Length = 973
Score = 1921 bits (4921), Expect = 0.0
Identities = 973/973 (100%), Positives = 973/973 (100%)
Query: 1 MNLPEALLRELVLHSPNLFYMSLAWPGRKKIEPFLHQLQPLYHAMIQRPVRMFIADEIGL 60
MNLPEALLRELVLHSPNLFYMSLAWPGRKKIEPFLHQLQPLYHAMIQRPVRMFIADEIGL
Sbjct: 1 MNLPEALLRELVLHSPNLFYMSLAWPGRKKIEPFLHQLQPLYHAMIQRPVRMFIADEIGL 60
Query: 61 GKTIQALAIARYLNLKGEAKRILILVPKILREQWREEVERLGIIPIVIESGAEVESKLRR 120
GKTIQALAIARYLNLKGEAKRILILVPKILREQWREEVERLGIIPIVIESGAEVESKLRR
Sbjct: 61 GKTIQALAIARYLNLKGEAKRILILVPKILREQWREEVERLGIIPIVIESGAEVESKLRR 120
Query: 121 KEGFFIVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVTLGTQRYEFVKDLVGKNKDLNVI 180
KEGFFIVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVTLGTQRYEFVKDLVGKNKDLNVI
Sbjct: 121 KEGFFIVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVTLGTQRYEFVKDLVGKNKDLNVI 180
Query: 181 FLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQEFYRRTMGTIIFRRTKSIVNELEGE 240
FLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQEFYRRTMGTIIFRRTKSIVNELEGE
Sbjct: 181 FLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQEFYRRTMGTIIFRRTKSIVNELEGE 240
Query: 241 NIFRKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKNTQKNSPQALLAVLVNKRASSSYSS 300
NIFRKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKNTQKNSPQALLAVLVNKRASSSYSS
Sbjct: 241 NIFRKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKNTQKNSPQALLAVLVNKRASSSYSS 300
Query: 301 AMKTLNKIVESYSVREVNLGKVRDYIERLFGLGYEDVNLEGFSEYDDVIDKIIEEYSAVL 360
AMKTLNKIVESYSVREVNLGKVRDYIERLFGLGYEDVNLEGFSEYDDVIDKIIEEYSAVL
Sbjct: 301 AMKTLNKIVESYSVREVNLGKVRDYIERLFGLGYEDVNLEGFSEYDDVIDKIIEEYSAVL 360
Query: 361 QESQVREFRELLDVLKRIKMDTKLNIVANVVKQHVERGEKVIIFTEFKDTLEYLRKNLPS 420
QESQVREFRELLDVLKRIKMDTKLNIVANVVKQHVERGEKVIIFTEFKDTLEYLRKNLPS
Sbjct: 361 QESQVREFRELLDVLKRIKMDTKLNIVANVVKQHVERGEKVIIFTEFKDTLEYLRKNLPS 420
Query: 421 LAGLSDEDVSILHGGMPSGKVEEEIRKFEKHGKLLISTDVASEGLNLQVANVLINYEAPW 480
LAGLSDEDVSILHGGMPSGKVEEEIRKFEKHGKLLISTDVASEGLNLQVANVLINYEAPW
Sbjct: 421 LAGLSDEDVSILHGGMPSGKVEEEIRKFEKHGKLLISTDVASEGLNLQVANVLINYEAPW 480
Query: 481 TPIKLEQRVGRVWRINQKRDVKAYTIFLDTEVDMYVLNNLYRKIMNIKEAIGGGPRVGIP 540
TPIKLEQRVGRVWRINQKRDVKAYTIFLDTEVDMYVLNNLYRKIMNIKEAIGGGPRVGIP
Sbjct: 481 TPIKLEQRVGRVWRINQKRDVKAYTIFLDTEVDMYVLNNLYRKIMNIKEAIGGGPRVGIP 540
Query: 541 VLAEKILEGDFEKIWKDIPGDFEAREKISEYDIGYAILRREIEGYKRAILNTLRILRQSI 600
VLAEKILEGDFEKIWKDIPGDFEAREKISEYDIGYAILRREIEGYKRAILNTLRILRQSI
Sbjct: 541 VLAEKILEGDFEKIWKDIPGDFEAREKISEYDIGYAILRREIEGYKRAILNTLRILRQSI 600
Query: 601 RGAVPQERVENIKRELELALGEDGLKKEDISDVVKDYLRELLGINVPEVTPILHRILVSG 660
RGAVPQERVENIKRELELALGEDGLKKEDISDVVKDYLRELLGINVPEVTPILHRILVSG
Sbjct: 601 RGAVPQERVENIKRELELALGEDGLKKEDISDVVKDYLRELLGINVPEVTPILHRILVSG 660
Query: 661 EEIKRGIKVGVKKGKAELFLVKLVRDGNEIHRIPVMVENGEVVYGIKLLQRLVELLKDGY 720
EEIKRGIKVGVKKGKAELFLVKLVRDGNEIHRIPVMVENGEVVYGIKLLQRLVELLKDGY
Sbjct: 661 EEIKRGIKVGVKKGKAELFLVKLVRDGNEIHRIPVMVENGEVVYGIKLLQRLVELLKDGY 720
Query: 721 VILGEANLDSPHLAKIIGVGRERLYKVREKYRKYERWLKRKMLKRDYLFTETQVVPEKIV 780
VILGEANLDSPHLAKIIGVGRERLYKVREKYRKYERWLKRKMLKRDYLFTETQVVPEKIV
Sbjct: 721 VILGEANLDSPHLAKIIGVGRERLYKVREKYRKYERWLKRKMLKRDYLFTETQVVPEKIV 780
Query: 781 EFEPLGEKFKMAKLIPLGLLEHLGLSQEDISLPTKEDELLLTRNFVPLEDILKAEAEAMR 840
EFEPLGEKFKMAKLIPLGLLEHLGLSQEDISLPTKEDELLLTRNFVPLEDILKAEAEAMR
Sbjct: 781 EFEPLGEKFKMAKLIPLGLLEHLGLSQEDISLPTKEDELLLTRNFVPLEDILKAEAEAMR 840
Query: 841 IVIELEKEKLRKEYGEEGWEVKDVSLHEHYDILVRHPDGEKYIEVKGHLPLLLQAELTEA 900
IVIELEKEKLRKEYGEEGWEVKDVSLHEHYDILVRHPDGEKYIEVKGHLPLLLQAELTEA
Sbjct: 841 IVIELEKEKLRKEYGEEGWEVKDVSLHEHYDILVRHPDGEKYIEVKGHLPLLLQAELTEA 900
Query: 901 EAKFAKENEDKYWLYIVTNIRKRPIILKVFKPLSNPRIFLVTGKGELEITGQIKVKIKER 960
EAKFAKENEDKYWLYIVTNIRKRPIILKVFKPLSNPRIFLVTGKGELEITGQIKVKIKER
Sbjct: 901 EAKFAKENEDKYWLYIVTNIRKRPIILKVFKPLSNPRIFLVTGKGELEITGQIKVKIKER 960
Query: 961 KRTLLSIGPIEGS 973
KRTLLSIGPIEGS
Sbjct: 961 KRTLLSIGPIEGS 973
>pir||D71079 hypothetical protein PH0900 - Pyrococcus horikoshii
>gi|3257311|dbj|BAA29994.1| (AP000004) 902aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 902
Score = 834 bits (2130), Expect = 0.0
Identities = 448/938 (47%), Positives = 643/938 (67%), Gaps = 50/938 (5%)
Query: 45 MIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWREEVER-LGI 103
M+ RPVR+ IADEIGLGKTIQAL IA+YL+L+GE K+ LI+VPK+LREQWREEV+R L
Sbjct: 1 MLIRPVRLMIADEIGLGKTIQALLIAKYLDLRGEIKKALIVVPKVLREQWREEVKRILEE 60
Query: 104 IPIVIESGAEVESKLRRKEGFFIVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVTLGTQR 163
P +I+ G E+E KLRR +FI+SIDLAK + + ++WDLVI+DE HN TLGTQR
Sbjct: 61 APEIIDRGIEIERKLRRPRKYFIISIDLAK--RYTKEITSQDWDLVIVDEVHNATLGTQR 118
Query: 164 YEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQEFYRRTMG 223
YEF+K+L KNK+LNVIFLSATPHRG+ KDYLARL LLDPTL ++ S + ++ Y RT G
Sbjct: 119 YEFLKELT-KNKNLNVIFLSATPHRGNNKDYLARLRLLDPTLPEEISPTNEKKLYMRTRG 177
Query: 224 TIIFRRTKSIVNELEGENIFRKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKNTQKNSPQ 283
T++ RRTK +VNELEGE +F+KC+FGAIVV +++EE++FF LN L +LVK+ SP
Sbjct: 178 TLVLRRTKKVVNELEGE-VFKKCHFGAIVVDVSDEERKFFEELNRALFELVKDQADYSPL 236
Query: 284 ALLAVLVNKRASSSYSSAMKTLNKIVES-YSVREVNLGKVRDYIERLFGLGYEDVNLEGF 342
LLAV++ KRASSSY +A+KTL +IVES + R+ + +Y+E++F +GYE++ +E F
Sbjct: 237 TLLAVIIRKRASSSYEAALKTLTRIVESSHRGRKEKAKGIEEYVEKIFRMGYEELEIEEF 296
Query: 343 SEYDDVIDKIIEEYSAVLQESQVREFRELLDVLKRI-KMDTKLNIVANVVKQHVERGEKV 401
E DD I KII+EY L E Q+ + + +L++ K+I D+KL ++++++ H+ +GEKV
Sbjct: 297 EEIDDAIHKIIDEYRGFLDERQLEKLKRVLELGKKIGNKDSKLEVISDIIAYHIRKGEKV 356
Query: 402 IIFTEFKDTLEYLRKNLPSLAG------LSDEDVSILHGGMPSGKVEEEIRKFEKHGKLL 455
IIFTEF+DTLEY+ LP + L +D++ LHGGM S ++E EI+KF + LL
Sbjct: 357 IIFTEFRDTLEYILGKLPGILRERHGILLESDDIAKLHGGMKSEEIEREIKKFHERSDLL 416
Query: 456 ISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFLDTEVDMY 515
+STDVASEGLNL VA+V+INYEAPW+PIKLEQRVGR+WR+NQ+++ AYT+FL TE D+
Sbjct: 417 VSTDVASEGLNLHVASVVINYEAPWSPIKLEQRVGRIWRLNQRKETNAYTVFLATETDLD 476
Query: 516 VLNNLYRKIMNIKEAIGGGPRVGIPVLAEKILEGDFEKIWKDIPGDFEAR-EKISEYDIG 574
VLNNLY+KIMNIKEAIG GP +G P I +GDFE +W++ D E R E++SEY++
Sbjct: 477 VLNNLYKKIMNIKEAIGSGPIIGKP-----IFKGDFENLWRE---DVEERNEEVSEYELI 528
Query: 575 YAILRREIEGYKRAILNTLRILRQSIRGAVPQERVENIKRELELALGEDGLKKEDISDVV 634
A ++ +++GY A++ TLRIL+Q + AVP +IKREL L L ED D+
Sbjct: 529 LASIKGQLKGYAGALVRTLRILKQKVENAVPVNPAGSIKRELSLIL-------EDTPDI- 580
Query: 635 KDYLRELLGINVPEVTPILHRILVSGEEIKRGIKVGVK--KGKAELFLVKLV-RDGNEIH 691
+ L+ ++ NVP ++ +L +I+ GI+V VK G +++ V +G E++
Sbjct: 581 -EVLKGIVEKNVPNPFRLVRALLRENSKIE-GIQVLVKGYNGSMDVYYVLFYDEEGREVY 638
Query: 692 RIPVMVENGEVVYGIKLLQRLVELLKDGYVILGEANLDSPHLAKIIGVGRERLYKVREKY 751
R P++VENG G +L+R+ E+L Y I+ + + + + + + R + + +Y
Sbjct: 639 RYPILVENGRYFIGFNILRRISEVLTKEYKIVKGVSKGTDYKVRTLIMDRV-YFPIIGRY 697
Query: 752 RKYERWLKRKMLKRDYLFTETQVVPEKIVEFEPLGE-KFKMAKLIPLGLLEHLGLSQEDI 810
YE + +KRD LF +V +K++E + + E +F++ K +P+ +++ LGL ++
Sbjct: 698 MDYE----KLSIKRDRLFKRIKVEIKKVLEIKGVSEGEFEIIKRVPVEIVKVLGLDFTNV 753
Query: 811 SLPTKEDELLLTRNFVPLEDILKAEAEAMRIVIELEKEKLRKEYGEEGWEVKDVSLHEHY 870
LPT+E L RNFVPL IL++E +AM IV+ELEK + G+ V+DVSL EHY
Sbjct: 754 ELPTEEYIKALERNFVPLNKILESERKAMEIVMELEKTR--------GYNVEDVSLREHY 805
Query: 871 DILVRHPDGEKYIEVKGHLPLLLQAELTEAEAKFAKENEDKYWLYIVTNIRKRPIILKVF 930
DI EKYIEVKGH P+L AELTE E KFA +NEDKYW+YIV+NI + P+I+K++
Sbjct: 806 DIRAFKDGEEKYIEVKGHYPMLFLAELTEKEYKFALKNEDKYWIYIVSNIAREPVIVKIY 865
Query: 931 KPLSNPRIFLVTGKGELEITGQIKVKIKERKRTLLSIG 968
KP S R + GE ++ ++ +++ ++ R +L +G
Sbjct: 866 KPFSQDRKVFIVKNGE-DVEVKVDIEVNKKARHVLKLG 902
>pir||D72308 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981530|gb|AAD36069.1|AE001761_1 (AE001761)
conserved hypothetical protein [Thermotoga maritima]
Length = 967
Score = 832 bits (2126), Expect = 0.0
Identities = 452/960 (47%), Positives = 642/960 (66%), Gaps = 36/960 (3%)
Query: 45 MIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWREEVERLGII 104
M+ RPVR+ IADEIGLGKTIQALAIARYL L+GEAK+ILILVPKILREQW++E+ RLG
Sbjct: 1 MLSRPVRILIADEIGLGKTIQALAIARYLELQGEAKKILILVPKILREQWKQEIRRLGGK 60
Query: 105 PIVIESGAEVESKLRRKEGF------FIVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVT 158
P+VI +G+EVE KL RK F F+VSIDLAK H +KF +WDL+I+DE HNVT
Sbjct: 61 PVVITNGSEVERKLLRKATFNNAAEYFVVSIDLAKSQNHSEKFSAIDWDLLIVDEVHNVT 120
Query: 159 LGTQRYEFVKDLVGKNK-DLNVIFLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQEF 217
TQRY F+K L+ K+K DLN++FLSATPHRG+PKDY+ RL LLDPTL D++ LDS++F
Sbjct: 121 YNTQRYNFLKSLIEKSKEDLNIVFLSATPHRGNPKDYIERLRLLDPTLTADWNALDSEKF 180
Query: 218 YRRTMGTIIFRRTKSIVNELEGENIFRKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKNT 277
YRRT G ++FRRTK +VN+LE IF+KC F A++V ITEEEK FF L++VL ++VK+
Sbjct: 181 YRRTHGVLVFRRTKKVVNDLEKREIFKKCDFNAVIVDITEEEKRFFEELDEVLFEMVKDV 240
Query: 278 QKNSPQALLAVLVNKRASSSYSSAMKTLNKIVESYSVREVNLGKVRDYIERLFGLGYEDV 337
NSP ALLAVL+ KRA+SSY SA+KT+N I+++ + D I+++FGLGY+++
Sbjct: 241 HMNSPVALLAVLLRKRAASSYESALKTINNIIKNQYSGASGEDVLEDQIKQIFGLGYDEM 300
Query: 338 NLEGFSEYDDVIDKIIEEYSA--VLQESQVREFRELLDVLKRI-KMDTKLNIVANVVKQH 394
LE SE DD+I II + L + Q+ ++L + K I K D+KL +A V+ H
Sbjct: 301 ELEENSEIDDLISSIINSVAKRYPLDKGQINALEKILKIGKAIGKNDSKLKTLAEVLAYH 360
Query: 395 VERGEKVIIFTEFKDTLEYLRKNLPSL-----AGLSDE-DVSILHGGMPSGKVEEEIRKF 448
+++ EKVI+FTEFKDTLEYLR NLP+L LS+E D+S+LHGGM S ++E+++ KF
Sbjct: 361 LKKNEKVIVFTEFKDTLEYLRNNLPTLLEQEGIHLSEEKDISVLHGGMKSEEIEKQVEKF 420
Query: 449 EKHGKLLISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFL 508
GKLLISTDVASEGLNLQVAN+LINYE PW+PIKLEQRVGR+WR+NQ ++ AYT+ L
Sbjct: 421 ANDGKLLISTDVASEGLNLQVANILINYEIPWSPIKLEQRVGRIWRLNQTKETIAYTLLL 480
Query: 509 DTEVDMYVLNNLYRKIMNIKEAIGGGPRVGIPVLAEKILEGDFEKIWKDIPGDFEAREKI 568
+ E D+ +L +LY+KI+NI +A+G GP VG PV + L G+FE +++ + + +
Sbjct: 481 NHEADLQILESLYQKILNITDAVGTGPNVGKPVFGTRTLSGNFEYRLENVQDEETSDSPV 540
Query: 569 SEYDIGY-AILRREIEGYKRAILNTLRILRQSIRGAVPQERVENIKRELELALGEDGLKK 627
SE+++ AI RR ++ + I++TL+ LR I VP I+ EL L D ++
Sbjct: 541 SEFELMLSAIKRRNLDEQTKRIISTLKSLRTKIEEVVPLNTCNEIQEELNSVLLPDDMES 600
Query: 628 EDISDVVKDYLRELLGINVPEVTPILHRILVS--GEEI--KRGIKVGVKKGKAE--LFLV 681
E + + +K Y+ + + L +IL E + ++ +K+ VK E LF V
Sbjct: 601 EIVFEKLKKYISVFENSFINSIGSYLFKILTDRIHEPLLNEKCLKIAVKNESKEYRLFQV 660
Query: 682 KLVRDGNEIHRIPVMVENG-----EVVYGIKLLQRLVELLKDGYVILGEANLDSP---HL 733
+++ G +I+ PV++E G ++ G LL++L ++ + ++ AN
Sbjct: 661 EVIDRGRKIYEYPVLIEIGGNVSPQLYRGTSLLEKLADVFSKEWFVIEWANPKEKMDIQT 720
Query: 734 AKIIGVGRERLYKVREKYRKYERWLKRKMLKRDYLFTETQVVPEKIVEFEPLGEK-FKMA 792
AK+I + L + +K+ Y+ L ++K D LF +I+ E L ++ F +
Sbjct: 721 AKLIDRSAKDLQSIMDKHTDYDIKLNESLMKTDSLFRRLNTRSSEILRVEGLSDREFSVF 780
Query: 793 KLIPLGLLEHLGLSQEDISLPTKEDELLLTRNFVPLEDILKAEAEAMRIVIELEKEKLRK 852
KL+ +LE LGLS + I LP + E + R+FVPLEDIL++E +AM IV+++EK++L +
Sbjct: 781 KLLHPSILEILGLSLDSIELPPSDYEKWMERSFVPLEDILESERKAMEIVMDIEKKRLIE 840
Query: 853 EYGEEG-WEVKDVSLHEHYDILVRHPDGEKYIEVKGHLPLLLQAELTEAEAKFAKENEDK 911
+YGE W+V+DVSL EHYDI V P+GEKYIEVKGH PL L AELT AE +FA +N D+
Sbjct: 841 KYGESSDWKVEDVSLKEHYDIKVSEPEGEKYIEVKGHKPLWLSAELTAAEHRFANDNRDR 900
Query: 912 YWLYIVTNI-RKRPIILKVFKPLSNP--RIFLVTGKGELEITGQIKVKIKERKRTLLSIG 968
YW+YIV+N+ K+P+ILK+F P + +I+LV +++IT IK ++R ++S+G
Sbjct: 901 YWIYIVSNLGGKKPVILKIFSPFDDEKRKIYLVHENKDIDITEIFGSTIKTKQRYVISLG 960
>pir||E72734 hypothetical protein APE0413 - Aeropyrum pernix (strain K1)
>gi|5104053|dbj|BAA79369.1| (AP000059) 1039aa long
hypothetical protein [Aeropyrum pernix]
Length = 1039
Score = 305 bits (772), Expect = 2e-81
Identities = 293/1015 (28%), Positives = 477/1015 (46%), Gaps = 145/1015 (14%)
Query: 33 PFLHQLQPLYHAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAK--RILILVPKIL 90
P LHQ + + ++ +P R+ IAD IGLGKT+ AL I + + K R+LI VP +L
Sbjct: 29 PLLHQTEVVAKSLFIKPTRILIADVIGLGKTVTALRILKTIEHYKNQKLGRVLIAVPAVL 88
Query: 91 REQWREEVERLGIIPIVIESGAEVESKLRRKE---GFFIVSIDLAKMPEHRDKFLEKEWD 147
EQW++E+ +GI PI+IE + ++ + ++ E G++I SID K PE+ +WD
Sbjct: 89 VEQWKDEMRSMGINPILIERKS-LDFRAKQPELPSGWYIGSIDTLKRPEYMAFLQRNKWD 147
Query: 148 LVIIDEAHNVTL----GTQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDP 203
+++DEAH + + R+ + L+ +N+D V+ LSATPHRG DYL+RL L+DP
Sbjct: 148 AIVVDEAHKLGVVGGEPNMRWRNLGKLIMENRDAIVLLLSATPHRGKANDYLSRLALVDP 207
Query: 204 TLIDDYSK------LDSQEFYRRTMGTIIFRRTKSIVNEL-EGENIFRKCYFGAIVVGIT 256
TL+D S D EFY+RT I+FRR K VN++ E IF+ C A+++
Sbjct: 208 TLLDVTSVSTLEKVFDKPEFYQRTHNVILFRRNKDDVNKIYERAEIFKPCNMLAVLIEPN 267
Query: 257 EEEKEFFRRLNDVLSKLV-------------KNTQKNSPQALLAVLVNKRASSSYSSAMK 303
+ E+ F R + ++ + + K + S ALL L+ KR SS + +K
Sbjct: 268 DVERGFLRTITELTTSYLRSYYTYIVKELGWKTGRAQSIVALLRTLLVKRGLSSPQALVK 327
Query: 304 TLNKIVESYS--VREVNLGKVRDYIERLFGLGYEDVN------LEG-FSEYDDVIDKIIE 354
T K+VE + ++ G D ++ ED L G E D+ +D+ E
Sbjct: 328 TFGKLVEKRGRFIELIDRGYTPDEAQKKIAEEIEDYARKLDEILSGDIGEIDEELDEEFE 387
Query: 355 EYSAVLQESQVREFRELL--------DVLKRIKMDTKLNIVANVVKQHVER--------- 397
+ + FRE L D+L +D+K+ + ++ +
Sbjct: 388 RLAIYFDKLLDDMFREELKKAQKYAEDILVGKAVDSKVETLKKILGLVLYTPPEELPDEF 447
Query: 398 ----GEKVIIFTEFKDTLEYLRKNLPSLAG--LSDEDVSILHGGMPSGKVEEEIRKFEKH 451
+K I+FTEFKDT YL + L A D + + G++E+ R +
Sbjct: 448 KDLASQKAIVFTEFKDTATYLYEKLRKWAEDEFGDPGIVRVFTSENRGEIEDIKRWLSED 507
Query: 452 GK-LLISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFLDT 510
G+ +L++TDVA EGLNLQ ANV+INYE W+PI+LEQR+GRVWR Q + + +FL
Sbjct: 508 GRRVLVTTDVAGEGLNLQYANVIINYEITWSPIRLEQRIGRVWRYGQDKTTYVFNLFLAD 567
Query: 511 EVDMYVLNNLYRKIMNIKEAIGG-----GPRVGIPVLAEKILE---GDFEKIWKDIPGD- 561
++ V ++ K+ I ++G G +V + + ++LE + E I IP +
Sbjct: 568 GLEKEVAETVFAKLYGISISVGKLEPILGEQVFLSTIRNELLEHAVEERETIGGLIPIEI 627
Query: 562 -FEARE-KISEYDIGYAILRREIEGYKRAILNTLRILRQSI---RGAVPQERVENIKREL 616
FE R+ +SE I ++ ++ + +A + L+ L + I R + E ++ EL
Sbjct: 628 NFENRKISLSEARI-IELVAKDARAFVKAFIKALKRLVREIKYKRIFPVRADAEKVREEL 686
Query: 617 ELALG----ED----------------GLKKEDISDVV----KDYLRELLGINVPEV-TP 651
G ED L E+ D + KD L I+ PE
Sbjct: 687 LHLTGFRDMEDVVETLKNAGEAFSKILDLSFEEREDKILLRSKDGTVFELPISNPETFLK 746
Query: 652 ILHRILVSGEEIKRGIKVGVKKGKAELFLVKLVRDGNEIHRIPV-MVENGE-----VVYG 705
L + + K + +K L V+++ G +R P+ ++ N E ++ G
Sbjct: 747 RLQAYFRTDDHAKYFVYQSSEKEVMLLSEVEVLIGGEIRYREPIGILANVETYSLTILRG 806
Query: 706 IKLLQRLVELLKDGYVILGEANLDSPHLAKIIGVGRERLYKVREKYRKYERWLKRKMLKR 765
+L +L+++L + + LD ++ + + + + YE LK +K
Sbjct: 807 KELFSKLLKILDNSVPVDEVYGLDD-----VLNLIPQIMSSSPNTF--YETALKNGAVKL 859
Query: 766 DYLFTETQVVPEKIVEFEPLGEKFKMAKLIPLGLLEHLGLSQEDISLPTKEDELLLTRNF 825
+ E + V EK+ +KF + + E + +LP +D
Sbjct: 860 IKMLEEYEEVKEKLG-----AKKFFHTYEPQVKIREPTFIMISSANLPEVKD-------- 906
Query: 826 VPLEDILK-AEAEAMRIVIELEKEKLRKEYGEEGWEVKDVSLHEHYDI--LVRHPDG--- 879
VP E++ AE EA+ V++ EK++ R E VS HEHYD+ + R DG
Sbjct: 907 VPSEEVWGWAEDEAISTVLDYEKQEDR--------EPTRVSGHEHYDVRSVKRGEDGSIK 958
Query: 880 -EKYIEVKGHLPLLLQAELTEAEAKFAKENEDKYWLYIVTNIR-KRPIILKVFKP 932
E++IEVK + L L E K A++ D YWLYIV +R ++P+IL + P
Sbjct: 959 EERFIEVKTKIKRSLNFGLKSEEFKVAEKKGDNYWLYIVYGVRTEKPVILCIKNP 1013
>gi|11499927 ATP-dependent RNA helicase HepA, putative [Archaeoglobus fulgidus]
>gi|7446070|pir||F69543 ATP-dependent RNA helicase HepA
homolog - Archaeoglobus fulgidus
>gi|2650747|gb|AAB91314.1| (AE001114) ATP-dependent RNA
helicase HepA, putative [Archaeoglobus fulgidus]
Length = 943
Score = 232 bits (586), Expect = 1e-59
Identities = 222/802 (27%), Positives = 401/802 (49%), Gaps = 92/802 (11%)
Query: 48 RPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWREEVE-RLGI-IP 105
RPVR+ IA E GLGKTI A + + ++ RILI+ P ++ QW++E++ + G+ +P
Sbjct: 53 RPVRVLIAYETGLGKTILAGLFIKEMVIRNPNTRILIVTPPNVQYQWQDELKNKFGMHVP 112
Query: 106 IVIESGAEVESKLRRKEGFFIVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVTLGTQRYE 165
++ E+ + + L++K + I S+D K + + WD+V++DE H T+ +R +
Sbjct: 113 LLTEADKQGKDPLKQK--WLIASMDTLKGENWLRRVEDHRWDIVVVDELHRATIKNRRAQ 170
Query: 166 FVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQEFYRRTMGTI 225
++ L + K +++ L+ATPH G ++ RL+L++ + + K EF ++
Sbjct: 171 LIQVLRDRTK--HMLALTATPHDGKEDQFVFRLSLINRNVDEQNWK----EFVKK----Y 220
Query: 226 IFRRTKSIVNELEGENIF-RKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKNTQKNSPQA 284
FRR K V +LEG IF +K Y I + EEEKEF+ + + K ++ + ++
Sbjct: 221 TFRRRKRDVLDLEGRKIFPQKVYPLTIEIEPDEEEKEFYWEVEKYVRSYYKLAEEENKRS 280
Query: 285 --LLAVLVNKRASSSYSSAMKTL-NKIVESYSVREVNLGKVRDYIERLFGLGYEDVNLEG 341
L+A +V + SSS ++ ++ L N+ + L D ++ L + EG
Sbjct: 281 IGLVATIVGRAVSSSINAGVQVLKNRYRRLFEGFAEELEDAEDILDEL-----KQAEEEG 335
Query: 342 FSE-YDDVIDKIIEEYSAVLQESQVREFRELLDVLKRIK-------MDTKLNIVANVVKQ 393
E + + KIIE S +++ V + +E+L+ L + D K + VV +
Sbjct: 336 DDEKLEKLRMKIIE--SVPVRKDLVEKEKEVLERLITLGEKLLERGRDKKTERLVQVVNE 393
Query: 394 HVERGEKVIIFTEFKDTLEYLRKNLPSLAGLSDEDVSILHGGMPSGKVEEEIRKFEKHGK 453
H+E+G KVIIFT+F TL++L + + G + V +HGG+ + + I K K
Sbjct: 394 HMEKGNKVIIFTQFLATLDHLERTFKEIYG--ENSVVTVHGGLTHEEKKNRIAKLWDSAK 451
Query: 454 LLISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFLDTEVD 513
+LI+TD A E LNLQ ANV+I+YE PW P+ QRVGRV+R Q++D+ ++ +++
Sbjct: 452 ILIATDAAGESLNLQAANVVIHYEIPWNPVVYIQRVGRVYRYGQEKDIYIQSMLPVFKIE 511
Query: 514 MYVLNNLYRKIMNIKEAIGGGPRVGIPVLAEKILEGDFE-KIWKDIPGD--FEAREKIS- 569
VL + +K+ I++ G + ++ I E D E +IW+ D +A E++S
Sbjct: 512 RRVLEVILQKVETIEKDFDIG---SVEIIGTIISERDIENEIWRAYVEDRIEDAGEEVSK 568
Query: 570 EYDIGYAILRREIEGYKRAILNTLRILRQSI---RGAVPQERVENIKREL----ELALGE 622
++D G ++L++ ++A + + + RG V E++++ L E LGE
Sbjct: 569 KFDKGKSVLQKIRLVLEKAEAAKKHVRAEKLLEDRGIVEIITEEDLRKYLFYFGEAKLGE 628
Query: 623 DGLKKE----DISDV----------VKDYLRELLGINVPEVTPILHRIL-VSGEEIKRGI 667
E +I DV +K E+L ++ +VT + + L + I++ +
Sbjct: 629 GKFYDEFTFFEIKDVRIHPEKILTEIKPSKAEIL--DLKDVTTLSEKELKLDNPAIRKAL 686
Query: 668 KVGV-----------KKGKAELFLVKLVR-DGNEIHRIPVMVENGEVVYGIKLLQRLVEL 715
+G+ ++G E+ L+KL G I+ IPV+V NG + + LQ L +
Sbjct: 687 YIGMCQRGEAIFSGNEEGYGEIRLLKLFDFYGEPIYEIPVVVFNGS-IKPFRFLQTLEPV 745
Query: 716 LKDGYVILGEANLDSPHLAKIIGVGRERLY--KVREKYRKYERWLKRKML-----KRDYL 768
+ + E L + +K I + R+ Y +V+E+ R Y + K+L + +Y
Sbjct: 746 ILSDEI---EKELTADLESKEIEI-RDSSYISEVKEEQRLYLKERVNKVLDALSIEEEYY 801
Query: 769 --FTETQVVPEKIVEFEPLGEK 788
F + +K+ E + + +K
Sbjct: 802 KRFLSDEQAKKKLQEIQEMKKK 823
>gi|10803646 ORF H1186 [Halobacterium sp. NRC-1] >gi|7484100|pir||T08316
probable ATP-dependent helicase H1186 - Halobacterium
sp. (strain NRC-1) plasmid pNRC100
>gi|2822377|gb|AAC82883.1| (AF016485) ORF H1186
[Halobacterium sp. NRC-1] >gi|10584193|gb|AAG20812.1|
(AE005149) ATP-dependent RNA helicase; HepA
[Halobacterium sp. NRC-1]
Length = 979
Score = 209 bits (527), Expect = 1e-52
Identities = 171/639 (26%), Positives = 300/639 (46%), Gaps = 66/639 (10%)
Query: 28 RKKIEPFLHQLQPLYHAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVP 87
R +IEP+ Q+Q Y + R I DE+GLGKTI+A + L +G A+R+LI+ P
Sbjct: 97 RIEIEPY--QVQAAYEILNSYDHRYLIGDEVGLGKTIEAGIVTEELIARGRAQRVLIVAP 154
Query: 88 KILREQWREEVERLGIIPIVIESGAEVESKLRR--------KEGFFIVSIDLAKMPEHRD 139
L QW++E+ VI V + +E I SID AK + +
Sbjct: 155 APLTVQWQQEMREKFDRNFVIYDRETVRTHRNSHPNQNVWLQEDLIITSIDFAKQDDVLE 214
Query: 140 KF--LEKEWDLVIIDEAHNVTLG---------TQRYEFVKDLVGKNKDLNVIFLSATPHR 188
L+ WDL + DEAH++T TQRY V + V +N D ++ L+ TPH+
Sbjct: 215 ALRNLDVPWDLAVFDEAHHLTARRGSDESIERTQRYT-VGEAVAENSDA-LLLLTGTPHK 272
Query: 189 GDPKDYLARLTLLDPTLIDDYSKLDSQEFYRRTMGTIIFRRTKSIVNELEGENIFRKCYF 248
G + + LLDP S++ E + ++ RR K + E +G +F +
Sbjct: 273 GKSDQFYFMVNLLDPYRFGHESQIHPDE-----LDDLMIRRLKEDMYETDGTRMFPEKNI 327
Query: 249 GAIVVGITEEEKEFFRRLNDVLSKLVKNTQK--NSPQALLAVLVNKRASSSYSSAMKTLN 306
A+ V ++ E++ + + + + + Q+ N V+ KR SS + K+L
Sbjct: 328 EALGVEMSPAERKLYDDVTEYIREYYNLAQQEENKAAGFTMVIYQKRLVSSIYAIQKSLE 387
Query: 307 ---KIVESYSVREVNLGKVRDYIERLFGLGYEDVNLEGFSEYD-DVIDKIIEEYSAVLQE 362
+ +++ +V E V++ I R E ++ + + ++ +E + L +
Sbjct: 388 NRMRAIQNDAVAEDLPDDVQELIPRY------STEPETLTDAERERVEAALETVTVTLNQ 441
Query: 363 SQVREFRELLDVLKRIKMDTKLNIVANVVKQHVER------GEKVIIFTEFKDTLEYLRK 416
SQ++E + + L R + + A ++KQ V+R EK++IFTE+ DTLEYLR
Sbjct: 442 SQIQEELDRVKQLWRQAKSIETDSKAQMLKQFVDRILTEDPDEKILIFTEYTDTLEYLRD 501
Query: 417 NLPSLAGLSDEDVSILHGGMPSGKVEEEIRKFEKHGKLLISTDVASEGLNLQVANVLINY 476
+ ++ D++ ++G + + +E+ FE ++I+TD A EGLNLQ A+++ N+
Sbjct: 502 RV-----FAEYDIAQVYGDLDQDRRRQEMADFENEKNIMIATDAAQEGLNLQFAHIMANF 556
Query: 477 EAPWTPIKLEQRVGRVWRINQKRDVKAYTIFLDTEVDMYVLNNLYRKIMNIKEAIGGGPR 536
+ PW+P +++QR+GR+ R Q+R V+ +F + +LN L K I+ +G
Sbjct: 557 DLPWSPTRIDQRMGRLHRYGQERTVEIRNLFFKDTRESEILNLLVEKTDQIESDLGMRSD 616
Query: 537 VGIPVLAEKILEGDFEKIWKDIPGDFEAREKISEYDIGYAILRREIEGYKRAIL------ 590
V VL + L+ + I I D E +++ D + +E + L
Sbjct: 617 VLGRVLEDVDLD---DTIMAAIAEDRPTDEVVADIDETIEERKNALETVENEFLIRDRFD 673
Query: 591 ------NTLRILRQSIRGAVPQERVENIKRELELALGED 623
L ++ +S G V ++ +E + RE G D
Sbjct: 674 LSDEDDEILDVIERSQHGDVSEDDIEVLVREFFDEFGGD 712
>sp|P54509|YQHH_BACSU HYPOTHETICAL HELICASE IN SINI-GCVT INTERGENIC REGION
>gi|7446097|pir||G69958 SNF2 helicase homolog yqhH -
Bacillus subtilis >gi|1303889|dbj|BAA12545.1| (D84432)
YqhH [Bacillus subtilis] >gi|2634892|emb|CAB14389.1|
(Z99116) similar to SNF2 helicase [Bacillus subtilis]
Length = 557
Score = 178 bits (446), Expect = 3e-43
Identities = 147/535 (27%), Positives = 255/535 (47%), Gaps = 80/535 (14%)
Query: 33 PFLHQLQPLYHAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILRE 92
P HQL+ + + + +ADE+GLGKT++A I + ++G AK+ILILVP L
Sbjct: 60 PLPHQLEVAQKVVEKMNGKAILADEVGLGKTVEAGLILKEYMIRGLAKKILILVPASLVS 119
Query: 93 QWREEVERLGIIPIVIESGAEVESKLRRKEGFFIVSIDLAKMPEHRDKFLEKEWDLVIID 152
QW +E++ +IP V + +S + + + SID AK HR+ L +DLVIID
Sbjct: 120 QWVKELQEKFLIPAV----EQKKSYVWEQCDIVVSSIDTAKRSPHREIVLSIPYDLVIID 175
Query: 153 EAHNV-TLGTQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLIDDYSK 211
EAH + T+ YEFV++LV K + L+ATP + ++ ++LL P + +
Sbjct: 176 EAHKLKNSKTKNYEFVRNLVKK----YCLLLTATPIQNRIEEIFNLVSLLKPGHLGSQNH 231
Query: 212 LDSQEFYRRTMGTIIFRRTKSIVNELEGEN-------IFRKCYFGAIVVGITEEEKEFFR 264
+EF ++ K +VN++ N +++ + + + + E+ +
Sbjct: 232 F-QEEFAKKKSSLEAHEHLKDLVNKVMIRNRRHDTGLNWKQRHVETVPIQFSPSEQALY- 289
Query: 265 RLNDVLSKLVKNTQKNSPQALLAVL-VNKRASSSYSSAMKTLNKIVESYSVREVNLGKVR 323
D +S+L + N P ++ +++ + + SS + TL K+++ + +
Sbjct: 290 ---DEISRLKDSI--NKPASMFSIMTLQRECCSSREAVYMTLKKMLDQKEKQAPAID--- 341
Query: 324 DYIERLFGLGYEDVNLEGFSEYDDVIDKIIEEYSAVLQESQVREFRELLDVLKRIKMDTK 383
+D I +I+ + V Q S+ +++D++K+I
Sbjct: 342 ----------------------EDTISVLIDRINQVTQNSKA---LQVVDLIKKI----- 371
Query: 384 LNIVANVVKQHVERGEKVIIFTEFKDTLEYLRKNLPSLAGLSDEDVSILHGGMPSGKVEE 443
+KVIIFTE++ T YL+ L G+S GG GK +
Sbjct: 372 --------------DDKVIIFTEYRATQIYLQWFLQQ-NGISSVP---FRGGFKRGKKDW 413
Query: 444 EIRKFEKHGKLLISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKA 503
F ++LI+T+ EG+NLQ N +INY+ PW P++LEQR+GR+ R+ Q+RDV
Sbjct: 414 MKDLFRGKIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHI 473
Query: 504 YTIFLDTEVDMYVLNNLYRKIMNIKEAIGGGPRVGIPVLAEKILEGDFEKIWKDI 558
Y + V+ ++L LY KI ++ +G + + KI +FE+ DI
Sbjct: 474 YNMATKHTVEEHILKLLYEKIHLFEKVVG-----ELDDILTKIQVNNFEEHLHDI 523
>dbj|BAB06536.1| (AP001516) helicase (Snf2/Rad54 family) [Bacillus halodurans]
Length = 566
Score = 175 bits (439), Expect = 2e-42
Identities = 137/511 (26%), Positives = 230/511 (44%), Gaps = 75/511 (14%)
Query: 30 KIEPFLHQLQPLYHAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKI 89
+++PF HQ++ + Q + +ADE+GLGKTI+A I + ++G AK++LILVP
Sbjct: 57 QLQPFPHQMEVAQTVIEQMNGKAILADEVGLGKTIEAGLILKEYMIRGLAKKVLILVPAS 116
Query: 90 LREQWREEVERLGIIPIVIESGAEVESKLRRKEGFFIVSIDLAKMPEHRDKFLEKEWDLV 149
L QW E+ IP + + A V + + SID AK HRD L + +DLV
Sbjct: 117 LVSQWAYELSSKFYIPAIPQKKAYVWEQY----DVVVASIDTAKRQPHRDIVLNQHYDLV 172
Query: 150 IIDEAHNV-TLGTQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLIDD 208
IIDEAH + T+ Y F+K L K + L+ATP + ++ ++LL P + D
Sbjct: 173 IIDEAHKLKNPKTKNYAFIKSL----KRKYCLLLTATPVQNKLEEIFNLVSLLKPGHLGD 228
Query: 209 YSKLDSQEFYRRTMGTIIFRRTKSIVNELEGEN-------IFRKCYFGAIVVGITEEEKE 261
+ +E+ + K +VN++ N + K + + +E E+
Sbjct: 229 LESFE-KEYRANKRAPKNEDKLKELVNKVMVRNRREETGIEWTKRIVQTVPITFSEGERA 287
Query: 262 FFRRLNDVLSKLVKNTQKNSPQALLAVLVNKRASSSYSSAMKTLNKIVESYSVREVNLGK 321
F+ + + K + NS L + + SS +A TL ++
Sbjct: 288 FYHAITKL--KQQPDVMTNSFSLL---TLQREICSSREAAFMTLKNMI------------ 330
Query: 322 VRDYIERLFGLGYEDVNLEGFSEYDDVIDKIIEEYSAVLQESQVREFRELLDVLKRIKMD 381
LE +++ +IE+ + ++ + EL+ +
Sbjct: 331 ---------------TKLEQEGRTSPILESLIEQVGTIEGHAKAEKALELIQQI------ 369
Query: 382 TKLNIVANVVKQHVERGEKVIIFTEFKDTLEYLRKNLPSLAGLSDEDVSILHGGMPSGKV 441
+KVIIFTE++ T YL+ L G+S GG GK
Sbjct: 370 ----------------NDKVIIFTEYRATQLYLQWYLKQ-HGISSVP---FRGGFKRGKK 409
Query: 442 EEEIRKFEKHGKLLISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDV 501
+ + FE ++LI+T+ EG+NLQ + +INY+ PW P+++EQR+GR+ R+ Q DV
Sbjct: 410 DWMRQLFENRAQVLIATEAGGEGINLQFCHHIINYDLPWNPMRIEQRIGRIHRLGQTEDV 469
Query: 502 KAYTIFLDTEVDMYVLNNLYRKIMNIKEAIG 532
+ Y + ++ +L LY KI + +G
Sbjct: 470 RIYNFAVKDTIEEQILTLLYEKIQLFERVVG 500
>pir||T17395 probable DEAH ATP-dependent helicase - Dichelobacter nodosus
>gi|2317808|gb|AAC33384.1| (U20246) putative DEAH
ATP-dependent helicase [Dichelobacter nodosus]
Length = 965
Score = 166 bits (417), Expect = 8e-40
Identities = 157/560 (28%), Positives = 254/560 (45%), Gaps = 61/560 (10%)
Query: 20 YMSLAWPGRKKIEPFLHQLQPLYHAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEA 79
Y+ LA P + P HQ+ L A+ VR +ADE+GLGKTI+A + R L L+G
Sbjct: 86 YVLLA-PMESNVIPLPHQIHALSRAISGDRVRYLLADEVGLGKTIEAGLVMRELKLRGLV 144
Query: 80 KRILILVPKILREQWREEVERLGIIPIVIESGAEVESKLRRKEGF------------FIV 127
+R L++ PK + QW E++ + G ++ + R G IV
Sbjct: 145 RRTLVVSPKGIATQWVAEMQTHFNEQFQLVLGDDIGTLQRLAPGADHRSSAWSMFDQVIV 204
Query: 128 SIDLAKMPEHR----------------DKFLEKEWDLVIIDEAHNVTLGTQ---RYEFVK 168
S+D K + R + + WDLVI+DEAH + T RY+ K
Sbjct: 205 SLDSVKPMDKRRGWTAERVAEYNRSRFEDLITAGWDLVIVDEAHRLGGSTDQVARYKLGK 264
Query: 169 DLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQEFYRRTMGTIIFR 228
L V+ LSATPH+G + + LLD D + +DS R + + + R
Sbjct: 265 GLAEAAP--YVLLLSATPHQGKTDAFHRLMNLLDD---DAFPDMDSVS--RERVASYVIR 317
Query: 229 RTKSIVNELEGENIFRKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKN------TQKNSP 282
K + +G+ +F+ V E + + L + ++ V+ +K
Sbjct: 318 TEKRKAIDADGKPLFKPRRTQMAPVA-WESRHQLQQLLYEAVTDYVREGYNQALREKKRH 376
Query: 283 QALLAVLVNKRASSSYSSAMKTLNKIVESYSVREVNLG-KVRDYIERLFGLGYEDVNLEG 341
L +L+ + SS + TL + + + E ++ + GL D +
Sbjct: 377 IGFLMILMQRLVVSSTRAIRTTLERRLAALKDGEQQASLRLAELENGADGLESPDDEIAE 436
Query: 342 FSEYD--DVIDKIIEEYSAVLQESQVREFRELLDVLKRIKM---DTKLN-IVANVVKQHV 395
+ D +++D++++ + + LQ S+ LLD R + D K ++ + K
Sbjct: 437 LYDMDGQELLDELLKSHVSALQ-SEGSHVETLLDAAVRCEQAGPDAKAEALIEWIYKLQA 495
Query: 396 ERGE---KVIIFTEFKDTLEYLRKNLPSLAGLSDEDVSILHGGMPSGKVEEEIRKFEKHG 452
E E KV+IFTEF T + L++ L + G+S V L+G M + F K
Sbjct: 496 EENEPDLKVLIFTEFVPTQQMLKEFLEA-RGIS---VVTLNGSMAMEERGAAQDAFRKSH 551
Query: 453 KLLISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFLDTEV 512
++L+STD EGLNLQ A+V+INY+ PW P++LEQR+GRV RI Q + V+A + V
Sbjct: 552 RVLVSTDAGGEGLNLQFAHVIINYDIPWNPMRLEQRIGRVDRIGQPKTVQAINFVFEDSV 611
Query: 513 DMYVLNNLYRKIMNIKEAIG 532
+ V L +K+ I + G
Sbjct: 612 EFRVREVLEQKLSVIFDEFG 631
>gi|10957432 ATP-dependent helicase HepA [Deinococcus radiodurans]
>gi|7471169|pir||C75633 ATP-dependent helicase HepA -
Deinococcus radiodurans (strain R1)
>gi|6460861|gb|AAF12565.1|AE001826_34 (AE001826)
ATP-dependent helicase HepA [Deinococcus radiodurans]
Length = 941
Score = 162 bits (405), Expect = 2e-38
Identities = 173/582 (29%), Positives = 271/582 (45%), Gaps = 68/582 (11%)
Query: 11 LVLHSPNLFYMSLAWP----GRKKIEPFLHQLQPLYHAMIQRPVRMFIADEIGLGKTIQA 66
L+L++ L S A P R +EP +QL PL A+ Q P R+ IAD++G+GKT++A
Sbjct: 72 LLLNAARLAVRSGAGPFRSLSRLGVEPRPYQLVPLLMALRQSPARLMIADDVGIGKTVEA 131
Query: 67 LAIARYLNLKGEAKRILILVPKILREQWREE------VERLGIIPIV---IESGAEVESK 117
IAR L +GE R+ +L P L QW EE ++ + ++P +E G
Sbjct: 132 ALIARELLDRGEIDRLTVLCPPHLAGQWVEELRVKFGIDAVAVLPGTARRLEKGCNPGQS 191
Query: 118 LRRKEGFFIVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVTLGT-------QRYEFVKDL 170
+ + F +VS+DL K R FL D VI+DEAH G QRY ++DL
Sbjct: 192 VFERYKFTVVSLDLVKSDRWRQDFLTNAPDFVIVDEAHASAEGEGMGTKRHQRYRLLEDL 251
Query: 171 VGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLIDDYSKLD------SQEFYRRTMGT 224
K +D ++I ++ATPH G + + L LL+P D+++L E R T+
Sbjct: 252 ARK-EDRHLILVTATPHSGKEDAFRSLLRLLNP----DFARLPLDLSGAQNERARATLAR 306
Query: 225 -IIFRRTKSIVNELEGENIFRKCYFGAIVVGITEEEKEFFRRLNDVLS------KLVKNT 277
++ R K I L+ + F + + + F +DVL+ +
Sbjct: 307 HLVQRGRKDIAEYLQEDTPFPTRRDAELHYALHPDYAALF---DDVLAYARESVHVPGEA 363
Query: 278 QKNSPQALLAVLVNKRA-SSSYSSAMKTLNKIVESYSVREVNLGKVRDYIERLFGLGYED 336
Q + A L RA +SS +A TL + + E + I+R LG E
Sbjct: 364 QSRTRIRWWAALGLLRALASSPQAAAATLRERAIAADDGETD----EAVIDR---LGREL 416
Query: 337 VNLEGFSEYDDVIDKIIEEYSAVLQESQVREFRELLDVLKRI-----KMDTKLNIVANVV 391
V L+ D +D A + Q LL + R D KL ++ V
Sbjct: 417 V-LDPEEGEDSALDM---TPGAQVDGEQSETTGRLLTLASRADALAGAKDNKLKLLTAQV 472
Query: 392 KQHVERGEKVIIFTEFKDTLEYLRKNLPSLAGLSDEDVSILHGGMPSGKVE--EEIRKFE 449
+ V++G I+F F T E + ++L A E +++ P +V+ EE+ + E
Sbjct: 473 QGLVDQGFAPIVFCRFIATAEAVAEHLRG-ALKGSEVLAVTGRHTPDERVDRVEELARAE 531
Query: 450 KHGKLLISTDVASEGLNLQVA-NVLINYEAPWTPIKLEQRVGRVWRINQ-KRDVKAYTIF 507
+ ++L++TD SEG+NLQ A + +I+Y+ PW P +L+QR GRV R Q +V+ TI+
Sbjct: 532 R--RVLVATDCLSEGINLQAAFSAVIHYDLPWNPTRLDQREGRVDRYGQASPEVRVLTIY 589
Query: 508 -LDTEVDMYVLNNLYRKIMNIKEAIGGGPRVGIPVLAEKILE 548
D +D +L L RK I+ + G V P AE +L+
Sbjct: 590 GEDNRIDTLILEVLVRKHRLIRATL--GTSVPAPEEAESLLD 629
>dbj|BAB04688.1| (AP001510) SNF2 helicase [Bacillus halodurans]
Length = 577
Score = 138 bits (344), Expect = 3e-31
Identities = 125/493 (25%), Positives = 225/493 (45%), Gaps = 71/493 (14%)
Query: 54 IADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWREEVERLGIIPIVIESGAE 113
+ADE+GLGKTI+A I + L ++G +LILVP L EQWR+E+ I + +
Sbjct: 73 LADEVGLGKTIEAGLIIKELLVRGLINSVLILVPAPLVEQWRDEMNDKFKIQLT-----D 127
Query: 114 VESKLRRKEGFFIVSIDLAKMPEHRDKFLEKE-WDLVIIDEAHNV-TLGTQRYEFVKDLV 171
++ + ++ I S+ + R + + K +DL+++DEAH + TQ Y+FV +
Sbjct: 128 LKEEGWEEQNLLISSMPYLVRSKKRQEIINKRTFDLLVVDEAHCLKNHRTQTYKFVYT-I 186
Query: 172 GKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQ-----------EFYRR 220
KN N + +SATP + D ++ + +L P + K Q E R
Sbjct: 187 QKN---NTLLMSATPIQNDMRELFNLVNILKPGFLKSRKKFREQFIVNRYTPKNIEALRD 243
Query: 221 TMGTIIFRRTKSIVNELEGENIFRKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKNTQKN 280
+ ++ R +S + R + + +TE E+ F + D K +
Sbjct: 244 LLNKVMIRHRRSDTLVELPRRVIRN-----VEIELTEIERNFHNGVIDFCRDTYKKYMEG 298
Query: 281 SPQALLAVLVNKRASSSYSSAMKTLNKIVESYSVREVNLGKVRDYIERLFGLGYEDVNLE 340
Q + + + + L+ + ++ S + +L +R +
Sbjct: 299 DIQ------IGWDKTRVHLIVLILLSLLKQNCSSPQASLSTLRTKM-------------- 338
Query: 341 GFSEYDDVIDKIIEEYSAVLQESQVREFRELLDVLKRIKMDTKLNIVANVVKQHVERGEK 400
F D V DK + +L+ + +RI +K + ++KQ E+
Sbjct: 339 -FPRLDGV-DK--------------KNCLDLIQLGERITAPSKAIELLKLLKQS---DEQ 379
Query: 401 VIIFTEFKDTLEYLRKNLPSLAGLSDEDVSILHGGMPSGKVEEEIRKFE-KHGKLLISTD 459
I+++E++ T++ L + L D V+ HG + S + ++ I +F+ K ++ IS++
Sbjct: 380 AIVYSEYRVTIDLLSELLEE----HDFTVTTYHGRLSSREKQQSIERFKNKEAQVFISSE 435
Query: 460 VASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFLDTEVDMYVLNN 519
+GLNLQ LIN++ PW P+++EQR+GRV R Q DV+ YT+ +D Y+L
Sbjct: 436 SGGQGLNLQFCRRLINFDLPWNPMRIEQRIGRVHRFGQVNDVEIYTMPTKGAIDEYLLYT 495
Query: 520 LYRKIMNIKEAIG 532
L K+ + IG
Sbjct: 496 LTSKVNLFEVVIG 508
>pir||H82068 RNA polymerase-associated protein HepA VC2506 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657088|gb|AAF95648.1| (AE004320) RNA
polymerase-associated protein HepA [Vibrio cholerae]
Length = 969
Score = 132 bits (329), Expect = 2e-29
Identities = 133/525 (25%), Positives = 232/525 (43%), Gaps = 83/525 (15%)
Query: 36 HQLQPLYHAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWR 95
HQL + + R+ +ADE+GLGKTI+A I L G A+RILI+VP+ L+ QW
Sbjct: 157 HQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQVLTGRAERILIVVPETLQHQWL 216
Query: 96 EEVERLGIIPI-------VIESGAEVESKLRRKEGFFIVSID-LAKMPEHRDKFLEKEWD 147
E+ R + +E+ +E ++ ++ + + S+D L K + ++ LE EWD
Sbjct: 217 VEMMRRFNLHFSIFDEERCVEAFSEADNPFETQQ-YVLCSLDFLRKSRQRFEQALEAEWD 275
Query: 148 LVIIDEAHNVTLGTQR----YEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDP 203
L+++DEAH++ ++ Y+ ++ L + V+ L+ATP + + + ARL LLD
Sbjct: 276 LLVVDEAHHLEWHPEKPSREYQVIEALAEQTP--GVLLLTATPEQLGRESHFARLRLLDA 333
Query: 204 TLIDDYSKLDSQE-------------FYRRTMGTIIFRRTKSIVNELEGENIFRKCYFGA 250
DY +E F + + +++E + E +F+ A
Sbjct: 334 DRFYDYEAFVKEEEQYAPVADAVTALFSGEKLSDEAKNKITELLSEQDVEPLFKALESHA 393
Query: 251 IVVGITEEEKEFFRRLND------VLSKLVKNTQKNSPQALLAVLVNKRASSSYSSAMKT 304
I +E L D VL + + K P + L+ S Y+++M+
Sbjct: 394 SEDEIALARQELIDNLMDRHGTGRVLFRNTRAAIKGFPVRNVH-LLPLEIPSQYTTSMRV 452
Query: 305 LNKIVESYSVREVNLGKVRDYIERLFGLGYEDVNLEGFSEYDDVIDKIIEEYSAVLQESQ 364
+ GK+ + L E++ F E++ +ES
Sbjct: 453 AGMLG----------GKLTPEARAMKMLYPEEI----FQEFEG-------------EESS 485
Query: 365 VREFRELLDVLKRIKMDTKLNIVANVVKQHVERGEKVIIFTEFKDTLEYLRKNLPSLAGL 424
+F D+++N + VK +R EK+++ T L + L G+
Sbjct: 486 WWQF------------DSRVNWLLEKVK--AKRSEKILVIASRASTALQLEQALREREGI 531
Query: 425 SDEDVSILHGGM---PSGKVEEEIRKFEKHGKLLISTDVASEGLNLQVANVLINYEAPWT 481
++ H GM K + E ++LI +++ SEG N Q AN L+ ++ P+
Sbjct: 532 R---ATVFHEGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFN 588
Query: 482 PIKLEQRVGRVWRINQKRDVKAYTIFLDTEVDMYVLNNLYRKIMN 526
P LEQR+GR+ RI QKRD+ Y +L TE +L +++ +N
Sbjct: 589 PDLLEQRIGRLDRIGQKRDIDVYVPYL-TETSQAILARWFQEGLN 632
>sp|P23852|HEPA_ECOLI RNA POLYMERASE ASSOCIATED PROTEIN (ATP-DEPENDENT HELICASE HEPA)
>gi|7446087|pir||C64727 probable ATP-dependent helicase
hepA - Escherichia coli >gi|1786245|gb|AAC73170.1|
(AE000116) probable ATP-dependent RNA helicase
[Escherichia coli K12]
Length = 968
Score = 117 bits (290), Expect = 6e-25
Identities = 118/489 (24%), Positives = 221/489 (45%), Gaps = 46/489 (9%)
Query: 36 HQLQPLYHAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWR 95
HQL + + R+ +ADE+GLGKTI+A I L G A+R+LI+VP+ L+ QW
Sbjct: 157 HQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWL 216
Query: 96 EEVERLGIIPIVI---ESGAEVESKLRR---KEGFFIVSIDLAKMPEHR-DKFLEKEWDL 148
E+ R + + E AE + E I S+D A+ + R + E EWDL
Sbjct: 217 VEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL 276
Query: 149 VIIDEAHNVTLG----TQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPT 204
+++DEAH++ ++ Y+ ++ L V+ L+ATP + + + ARL LLDP
Sbjct: 277 LVVDEAHHLVWSEDAPSREYQAIEQLA--EHVPGVLLLTATPEQLGMESHFARLRLLDPN 334
Query: 205 LIDDYSK-LDSQEFYRRTMGTIIFRRTKSIVNELEGENIFRKCYFGAIVVGITEEEKEFF 263
D+++ ++ Q+ YR + N+L + + ++G E++
Sbjct: 335 RFHDFAQFVEEQKNYRPVADAVAMLLAG---NKLSNDEL--------NMLGEMIGEQDIE 383
Query: 264 RRLNDVLSKLVKNTQKNSPQALLAVLVNKRASSSYSSAMKTLNKIVESYSVREVNLGKVR 323
L S +++ Q L+++L+++ +S + V+ + RE++ K+
Sbjct: 384 PLLQAANSD--SEDAQSARQELVSMLMDRHGTSRV--LFRNTRNGVKGFPKRELHTIKLP 439
Query: 324 DYIERLFGLGYEDVNLEGFSEYDDVIDKIIEEYSAVLQESQVREFRELLDVLKRIKMDTK 383
+ + + S D D + E + QE + D D +
Sbjct: 440 LPTQYQTAIKVSGIMGARKSAEDRARDMLYPE--RIYQEFEG-------DNATWWNFDPR 490
Query: 384 LNIVANVVKQHVERGEKVIIFTEFKDTLEYLRKNLPSLAGLSDEDVSILHGGMPSGKVEE 443
+ + + H R +KV++ T L + L G+ ++ H GM + +
Sbjct: 491 VEWLMGYLTSH--RSQKVLVICAKAATALQLEQVLREREGIR---AAVFHEGMSIIERDR 545
Query: 444 EIRKFEKH---GKLLISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRD 500
F + ++L+ +++ SEG N Q A+ ++ ++ P+ P LEQR+GR+ RI Q D
Sbjct: 546 AAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHD 605
Query: 501 VKAYTIFLD 509
++ + +L+
Sbjct: 606 IQIHVPYLE 614
>pir||G83231 RNA helicase HepA PA3308 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949437|gb|AAG06696.1|AE004753_4
(AE004753) RNA helicase HepA [Pseudomonas aeruginosa]
Length = 950
Score = 115 bits (284), Expect = 3e-24
Identities = 153/594 (25%), Positives = 247/594 (40%), Gaps = 75/594 (12%)
Query: 3 LPEALLRELVLHSPNLFYMSLAWP-GRKKIEPFLHQLQPLYHAMIQRPVRMFIADEIGLG 61
LP LR L + S W G + +P HQL + R+ +ADE+GLG
Sbjct: 124 LPWFSLRYHTLERRSQLLQSSLWGLGGARAQPIAHQLHIAREVADRMAPRVLLADEVGLG 183
Query: 62 KTIQALAIARYLNLKGEAKRILILVPKILREQWREEVERLGIIPIVI---ESGAEVE-SK 117
KTI+A I L G A R+LILVP+ L+ QW E+ R + + + E AE + S
Sbjct: 184 KTIEAGLIIHRQLLSGRAGRVLILVPENLQHQWLVEMRRRFNLQVALFDKERFAESDASN 243
Query: 118 LRRKEGFFIVSIDLAKMPEH-RDKFLEKEWDLVIIDEAHNVTLGTQRYEFVKDLVGKNKD 176
+V+++ K E +D WDL+++DEAH++ + LV + +
Sbjct: 244 PFEDTQLALVALEWLKEDERAQDALFAAGWDLLVVDEAHHLVWHQDQVSAEYALVEQLAE 303
Query: 177 L--NVIFLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQEFYRRTMGTIIFRRTKSIV 234
+ V+ L+ATP + + ARL LLDP D E +RR +R V
Sbjct: 304 IIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDL------EAFRRESEQ--YRPVAEAV 355
Query: 235 NELEGENIFRKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKNTQKNSPQALLAVLVNKRA 294
EL G++ G + F D L V+ + + L+ L+++
Sbjct: 356 QELLDH--------GSLSAGARKAIHGFLGSEGDELLASVEGGDEEARSRLVRELLDRHG 407
Query: 295 SSSYSSAMKTLNKIVESYSVREVN---LGKVRDYIERLFGLG---YEDVNLEGFSEYDDV 348
+ + V+ + RE++ L Y E G Y +VN + E D
Sbjct: 408 TGRV--LFRNTRAAVQGFPQRELHAYPLPMPSQYEELPAGEHPDLYPEVNFQQQWEDGDD 465
Query: 349 IDKIIEEYSAVLQESQVREFRELLDVLKRIKMDTKLNIVANVVKQHVERGEKVIIFTEFK 408
++ V L+D LK +K L I A H E + +
Sbjct: 466 NNRWWRFDPRV---------EWLIDTLKMLKQFKVLVICA-----HAETA------LDLE 505
Query: 409 DTLEYLRKNLPSLAGLSDEDVSILHGGMPSGKVEEEIRKFEKHGKLLISTDVASEGLNLQ 468
D L LR + A + E +SIL + +E E ++LI +++ SEG N Q
Sbjct: 506 DALR-LRSGIS--ATVFHEGMSILERDRAAAYFADE----EFGAQVLICSEIGSEGRNFQ 558
Query: 469 VANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFLDTEVDMYVLNNLYRKIMN-- 526
A+ L+ ++ P P LEQR+GR+ RI Q+ ++ + L+ L Y + +N
Sbjct: 559 FAHHLVLFDLPAHPDLLEQRIGRLDRIGQRHTIQLHVPHLENSAQQR-LFQWYHQALNAF 617
Query: 527 IKEAIGG-------GPRVGIPVLAEKILEGDFEKIWKDIPGDFEAREKISEYDI 573
+ G GPR+ +P +L+G +K W + + AR + E ++
Sbjct: 618 LNTCPTGNALQHEFGPRL-LP-----LLDGGEDKAWDALLAEGRARREALEAEL 665
>emb|CAA38617.1| (X54847) unnamed protein product [Escherichia coli]
Length = 401
Score = 93.2 bits (228), Expect = 1e-17
Identities = 64/196 (32%), Positives = 104/196 (52%), Gaps = 14/196 (7%)
Query: 36 HQLQPLYHAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWR 95
HQL + + R+ +ADE+GLGKTI+A I L G A+R+LI+VP+ L+ QW
Sbjct: 157 HQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWL 216
Query: 96 EEVERLGIIPIVI---ESGAEVESKLRR---KEGFFIVSIDLAKMPEHR-DKFLEKEWDL 148
E+ R + + E AE + E I S+D A+ + R + E EWDL
Sbjct: 217 VEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL 276
Query: 149 VIIDEAHNVTLG----TQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPT 204
+++DEAH++ ++ Y+ ++ L V+ L+ATP + + + ARL LLDP
Sbjct: 277 LVVDEAHHLVWSEDAPSREYQAIEQLA--EHVPGVLLLTATPEQLGMESHFARLRLLDPN 334
Query: 205 LIDDYSK-LDSQEFYR 219
D+++ ++ Q+ YR
Sbjct: 335 RFHDFAQFVEEQKNYR 350
>pir||S15944 hypothetical protein (polB 3' region) - Escherichia coli (fragment)
>gi|227828|prf||1712306C polB-associated ORF
[Escherichia coli]
Length = 422
Score = 93.2 bits (228), Expect = 1e-17
Identities = 64/196 (32%), Positives = 104/196 (52%), Gaps = 14/196 (7%)
Query: 36 HQLQPLYHAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWR 95
HQL + + R+ +ADE+GLGKTI+A I L G A+R+LI+VP+ L+ QW
Sbjct: 157 HQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWL 216
Query: 96 EEVERLGIIPIVI---ESGAEVESKLRR---KEGFFIVSIDLAKMPEHR-DKFLEKEWDL 148
E+ R + + E AE + E I S+D A+ + R + E EWDL
Sbjct: 217 VEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL 276
Query: 149 VIIDEAHNVTLG----TQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPT 204
+++DEAH++ ++ Y+ ++ L V+ L+ATP + + + ARL LLDP
Sbjct: 277 LVVDEAHHLVWSEDAPSREYQAIEQLA--EHVPGVLLLTATPEQLGMESHFARLRLLDPN 334
Query: 205 LIDDYSK-LDSQEFYR 219
D+++ ++ Q+ YR
Sbjct: 335 RFHDFAQFVEEQKNYR 350
>pir||S40575 hypothetical protein - Escherichia coli >gi|216479|dbj|BAA01330.1|
(D10483) hypotheitical protein 422 (polB 3'
region)(PIR:PQ0118) [Escherichia coli]
Length = 567
Score = 93.2 bits (228), Expect = 1e-17
Identities = 64/196 (32%), Positives = 104/196 (52%), Gaps = 14/196 (7%)
Query: 36 HQLQPLYHAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWR 95
HQL + + R+ +ADE+GLGKTI+A I L G A+R+LI+VP+ L+ QW
Sbjct: 157 HQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWL 216
Query: 96 EEVERLGIIPIVI---ESGAEVESKLRR---KEGFFIVSIDLAKMPEHR-DKFLEKEWDL 148
E+ R + + E AE + E I S+D A+ + R + E EWDL
Sbjct: 217 VEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL 276
Query: 149 VIIDEAHNVTLG----TQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPT 204
+++DEAH++ ++ Y+ ++ L V+ L+ATP + + + ARL LLDP
Sbjct: 277 LVVDEAHHLVWSEDAPSREYQAIEQLA--EHVPGVLLLTATPEQLGMESHFARLRLLDPN 334
Query: 205 LIDDYSK-LDSQEFYR 219
D+++ ++ Q+ YR
Sbjct: 335 RFHDFAQFVEEQKNYR 350
>pir||A41878 helicase homolog hepA - Escherichia coli (fragment)
Length = 510
Score = 93.2 bits (228), Expect = 1e-17
Identities = 64/196 (32%), Positives = 104/196 (52%), Gaps = 14/196 (7%)
Query: 36 HQLQPLYHAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWR 95
HQL + + R+ +ADE+GLGKTI+A I L G A+R+LI+VP+ L+ QW
Sbjct: 157 HQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWL 216
Query: 96 EEVERLGIIPIVI---ESGAEVESKLRR---KEGFFIVSIDLAKMPEHR-DKFLEKEWDL 148
E+ R + + E AE + E I S+D A+ + R + E EWDL
Sbjct: 217 VEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL 276
Query: 149 VIIDEAHNVTLG----TQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPT 204
+++DEAH++ ++ Y+ ++ L V+ L+ATP + + + ARL LLDP
Sbjct: 277 LVVDEAHHLVWSEDAPSREYQAIEQLA--EHVPGVLLLTATPEQLGMESHFARLRLLDPN 334
Query: 205 LIDDYSK-LDSQEFYR 219
D+++ ++ Q+ YR
Sbjct: 335 RFHDFAQFVEEQKNYR 350
>pir||T40879 probable helicase - fission yeast (Schizosaccharomyces pombe)
>gi|3668152|emb|CAA21109.1| (AL031764) helicase with SNF2
domain [Schizosaccharomyces pombe]
Length = 1284
Score = 91.3 bits (223), Expect = 5e-17
Identities = 124/542 (22%), Positives = 226/542 (40%), Gaps = 89/542 (16%)
Query: 43 HAMIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWREEVER-- 100
H + Q+ + +ADE+GLGKT Q +A L +G L++VP E W E+ R
Sbjct: 562 HLLYQQKLSGILADEMGLGKTCQVVAFFALLLEQGHHGPHLVVVPSSTLENWLRELARFC 621
Query: 101 --LGIIPIV--IESGAEVESKLRRKE---GFFIVSIDLAKMPEHRDKFLEKE-WDLVIID 152
L + P + A + + E + + LA + FL+ + +D+ + D
Sbjct: 622 PSLRVEPYYGSQQERANIREAIEENEIKYDILVTTYQLATNNKEDRSFLKHQNFDVCVYD 681
Query: 153 EAHNVTLGTQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLID----- 207
E H L + E K L+ N + ++ L+ TP + + K+ ++ L + P + D
Sbjct: 682 EGHY--LKNRMSERYKHLMNLNANFRLL-LTGTPLQNNLKELVSLLAFILPNMFDSDMDD 738
Query: 208 ---------------DYSKLDSQEFYR-RTMGT--IIFRRTKSIVNELEGEN-IFRKCYF 248
+ + L Q R +TM T ++ RR ++N+L + I C
Sbjct: 739 LDVIFKAKPTADADIEQALLSKQRISRAKTMMTPFVLRRRKNQVLNDLPKKTQIIEHCK- 797
Query: 249 GAIVVGITEEEKEFFRRLNDVLSKLVKNTQKNSPQALLAVLVNKRASSSYSSAMKTLNKI 308
++E + E + R + L KN Q NKR+ + S K+L
Sbjct: 798 ------LSENQLEIYNRY----AALQKNQQLRRDDKR-----NKRSKNDEESDGKSL--- 839
Query: 309 VESYSVREVNLGKVRDYIERLFGLGYEDVNLEGFS-------EYDDVIDKIIEEYSAVLQ 361
S + L K ++ LF Y+D L+ + +Y + ++ I E V+
Sbjct: 840 --SAGHVLMQLRKAANHA-LLFRKFYDDEKLKQMAKDIMQEEQYKNANEQYIYEDMEVMS 896
Query: 362 ESQVREFRELLDVLKRIK------MDT-KLNIVANVVKQHVERGEKVIIFTEFKDTLEYL 414
+ ++ L+ MD+ K+ ++ ++ + E G ++++F++F L+ L
Sbjct: 897 DFELHRLCRSFPTLQSYTLKDDPWMDSGKIRVLKELLPKMKEEGSRILLFSQFTQMLDIL 956
Query: 415 RKNLPSLAGLSDEDVSILH-GGMPSGKVEEEI----RKFEKHGKLLISTDVASEGLNLQV 469
+ L +L +S + G +V ++I K E L+ST G+NL
Sbjct: 957 EQVLDTLK------ISYVRLDGSTQVEVRQDIIDQFHKEEDVTVFLLSTKAGGFGINLAC 1010
Query: 470 ANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFLDTEVDMYVLNNLYRKIMNIKE 529
ANV+I Y+ + P Q R R+ Q R+V + D ++ Y+ +K+ N K
Sbjct: 1011 ANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYI-----QKLANTKL 1065
Query: 530 AI 531
A+
Sbjct: 1066 AL 1067
>gi|11499053 ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus]
>gi|7428313|pir||A69432 ATP-dependent RNA helicase
homolog - Archaeoglobus fulgidus
>gi|2649107|gb|AAB89786.1| (AE001002) ATP-dependent RNA
helicase, putative [Archaeoglobus fulgidus]
Length = 741
Score = 83.1 bits (202), Expect = 1e-14
Identities = 135/585 (23%), Positives = 245/585 (41%), Gaps = 78/585 (13%)
Query: 59 GLGKT-IQALAIA-RYLNLKGEAKRILILVP-KILREQWREEVERLGIIPIVIESGAEVE 115
GLGKT I AL IA R LN G ++L L P K L EQ ++R+ + ++ EV
Sbjct: 39 GLGKTTIAALVIASRLLNEDG---KVLFLAPTKPLVEQHARFLKRVLKVEEIVSLSGEVP 95
Query: 116 SKLRR----KEGFFIVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVTLGTQRYEFV-KDL 170
+ R+ K + + + + + ++ LV+ DEAH +G Y F+ K+
Sbjct: 96 PEKRKELWEKARIVVSTPQVVENDLLAGRISLEDVILVVFDEAHRA-VGNYAYVFIAKEY 154
Query: 171 VGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQEFYRRTMGTIIFRRT 230
+ K ++ ++A+P DP+ + + L I+ ++ DS I + +
Sbjct: 155 LRTAKKPLILAMTASPG-SDPERIMEVIQNLGIEAIEVRTEWDSDVAPYVGKKRIEWIKV 213
Query: 231 KSIVNELEGENIFRKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKNTQKNSPQALLAVLV 290
E + ++C K F+RL ++ ++ +N+ K AL L
Sbjct: 214 DIPEEMKEVKERLKECI------------KIRFKRLRELWIEVPENSSKRDLLALQEALQ 261
Query: 291 NKRASSSYSSAMKTLNKIVESYSVREVNLGKVRDYIERLFGLGYEDVNLEGFSEYDDVID 350
+ ASS S + L+ + E ++ E + +G +
Sbjct: 262 AEAASSQSSEIFEALSILAEIMKLQHA----------------VELIETQGVKAVKSYLR 305
Query: 351 KIIEEYSAVLQESQVRE------FRELLDVLKRIKMD-TKLNIVANVVKQHVERG--EKV 401
K++ E ++ + F++ + L + K++ KL + ++K+ E+ +V
Sbjct: 306 KLVREATSKGGSKAAKSIVGDPIFKKAVIALSKCKVEHPKLEKLKEILKEQFEKNPDSRV 365
Query: 402 IIFTEFKDTLEYLRKNLPSL------AGLSDEDVSILHGGMPSGKVEEEIRKFEKHG-KL 454
I+FT ++D+ E L L L G + D GM + E I KF + K+
Sbjct: 366 IVFTNYRDSAEMLVNELSPLFPVAKFVGQASRDND---KGMRQKEQIETIDKFRRGVYKV 422
Query: 455 LISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFLDTEVDM 514
L++T V EGL++ ++++ YEA + I+ QR GR R + R V T E
Sbjct: 423 LVATSVGEEGLDIPSTDLVVFYEAVPSEIRAIQRKGRTGRGREGRIVVLVTKGTRDEAYY 482
Query: 515 YVL----NNLYRKIMNIKEAIGGGPR----------VGIPVLAE-KILEGDFEKIWKDIP 559
Y +Y KI+ IK I R GI V+ + + L + K ++I
Sbjct: 483 YSSMKKERKMYDKILEIKRIIDRKQRSIGDYVLPEETGIKVIVDSRELRSEVVKHLREIG 542
Query: 560 GDFEARE-KISEYDIG--YAILRREIEGYKRAILNTLRILRQSIR 601
E R ++++Y + A+ R+ +E + +I+ R+ Q R
Sbjct: 543 AKIEIRNLEVADYVVSDRVAVERKTVEDFLNSIIQKERLFSQVAR 587
>gb|AAF52824.1| (AE003626) CG5899 gene product [Drosophila melanogaster]
Length = 844
Score = 81.1 bits (197), Expect = 5e-14
Identities = 119/526 (22%), Positives = 216/526 (40%), Gaps = 95/526 (18%)
Query: 45 MIQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRI-LILVPKILREQWREEVERLGI 103
M ++ + +ADE+GLGKTIQ +A YL G ++ LI+VP + W E+ R
Sbjct: 303 MHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLSQAAHLIVVPSSTLDNWEAEISR-WC 361
Query: 104 IPIVIES--GAEVESKLRR----KEGF--FIVSID----LAKMPEHRDKFLEKEWDLVII 151
+V+E G++ E + R K+GF F V + + PE R F + D VI
Sbjct: 362 PELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLLTTYHIVGSTPEERKMFRVCKLDYVIF 421
Query: 152 DEAHNV-TLGTQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLI---- 206
DEAH + + TQRY +L+ N + ++ L+ TP + + + ++ L + P
Sbjct: 422 DEAHMLKNMTTQRY---ANLITINARMRIL-LTGTPLQNNLLELISLLCFVMPKFFAKSI 477
Query: 207 -----------------DDYSKLDSQEFYR--RTMGTIIFRRTKSIVNELEGENIFRKCY 247
D+ S+ + R R M + RR K V +N+ +K
Sbjct: 478 EDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKPFVLRRLKKDVL----KNLPKKLS 533
Query: 248 FGAIVVGITEEEKEFFRRLNDVLSKLVKNTQKNSPQALLAVLVNKRASSSYSSAMKTLNK 307
V ++ ++K ++ L D S +S +A +A+++ R +++ M
Sbjct: 534 L-VEKVPMSSQQKIYYHELVDYYSNNKGEVCSSSERAGIAIMMEMRRIANHPLLM----- 587
Query: 308 IVESYSVREVNLGKVRDYIERLFGLGYEDVNLEGFSE-------YDDVIDKIIEEYSAVL 360
R Y + D NL GFS+ + ++ I E AV+
Sbjct: 588 ---------------RHY--------FTDANLRGFSKRLANASSFKKTNEQYIFEELAVM 624
Query: 361 QESQV------REFRELLDVLKRIKMDTKLNIVANVVKQHVERGEKVIIFTEFKDTLEYL 414
+ QV EF ++ I K + ++ + G +V++F++F L+ +
Sbjct: 625 SDFQVYQMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIV 684
Query: 415 RKNLPSLAGLSDEDVSILHGGMPSGKVEEEIRKFEKHGKL---LISTDVASEGLNLQVAN 471
+ L + L G ++ I F + L+ST G+NL A+
Sbjct: 685 EEYL----RIRKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAAD 740
Query: 472 VLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFLDTEVDMYVL 517
+ ++ + P +Q R R+ Q+R V Y + ++ ++ +L
Sbjct: 741 TCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGIL 786
>gi|6321275 DNA-dependent ATPase; Rad54p [Saccharomyces cerevisiae]
>gi|417577|sp|P32863|RA54_YEAST DNA REPAIR AND
RECOMBINATION PROTEIN RAD54 >gi|83449|pir||JH0440 RAD54
protein - yeast (Saccharomyces cerevisiae)
>gi|172343|gb|AAA34949.1| (M63232) recombination and
repair protein [Saccharomyces cerevisiae]
>gi|728692|emb|CAA88534.1| (Z48618) RAD54 [Saccharomyces
cerevisiae] >gi|1322760|emb|CAA96875.1| (Z72685) ORF
YGL163c [Saccharomyces cerevisiae]
Length = 898
Score = 79.2 bits (192), Expect = 2e-13
Identities = 112/483 (23%), Positives = 198/483 (40%), Gaps = 69/483 (14%)
Query: 54 IADEIGLGKTIQALAIARYLNLKG-EAKRIL----ILVPKILREQWREE-VERLG---II 104
+ADE+GLGKT+Q +A+ L +G + KR++ I+ P L W E ++ LG +
Sbjct: 333 MADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWLGPNTLT 392
Query: 105 PIVIESG-----------AEVESKLRRKEGFFIVS----IDLAKMPEHRDKFLEKEWDLV 149
P+ ++ ++ + +G IV I + + D+ L+
Sbjct: 393 PLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLRRNVDQLKNCNVGLM 452
Query: 150 IIDEAHNVTLGTQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLIDDY 209
+ DE H + G D + + + LS TP + D +Y A L+ +P L
Sbjct: 453 LADEGHRLKNGDSLTFTALDSISCPRR---VILSGTPIQNDLSEYFALLSFSNPGL---- 505
Query: 210 SKLDSQEFYRRTMGTIIFRRTKSIVNELE---GENIFRKCYFGAIVVGITEEEKEFFRRL 266
L S+ +R+ I R + + E GE +K T K RR
Sbjct: 506 --LGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLS--------TIVSKFIIRRT 555
Query: 267 NDVLSKLVKNTQKNSPQALLAVLVNKRASSSYSSAMKTLNKIVESYSVREVNLGKVRDYI 326
ND+L+K + ++ + VN + + + NK+++S V++V G
Sbjct: 556 NDILAKYLPCKYEH------VIFVNLKPLQN-----ELYNKLIKSREVKKVVKGVGGSQP 604
Query: 327 ERLFGLGYEDVNLEGFSEYDDVIDKIIEEYSAVLQESQVREFRELLDVLKRIKMDTKLNI 386
R G+ + N ++D D +E L + + DV + K K +I
Sbjct: 605 LRAIGILKKLCNHPNLLNFEDEFD---DEDDLELPDDYNMPGSKARDV--QTKYSAKFSI 659
Query: 387 VANVV-KQHVERGEKVIIFTEFKDTLEYLRKNLPSLAGLSDEDVSILHGGMPSGKVEEEI 445
+ + K E +K+++ + + TL+ + K + L G M K ++ +
Sbjct: 660 LERFLHKIKTESDDKIVLISNYTQTLDLIEK----MCRYKHYSAVRLDGTMSINKRQKLV 715
Query: 446 RKF-EKHGK---LLISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDV 501
+F + G+ L+S+ G+NL AN LI + W P +Q + RVWR QK+D
Sbjct: 716 DRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDC 775
Query: 502 KAY 504
Y
Sbjct: 776 FIY 778
>gb|AAB95091.2| (U45025) 89B helicase [Drosophila melanogaster]
Length = 913
Score = 74.5 bits (180), Expect = 5e-12
Identities = 113/501 (22%), Positives = 199/501 (39%), Gaps = 60/501 (11%)
Query: 54 IADEIGLGKTIQALAIARYLNLKGEAKRI-----LILVPKILREQWREEVERLGIIPIVI 108
+ D++GLGKT+Q + I ++ + + L++ P L W EVE+ V+
Sbjct: 363 LCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVL 422
Query: 109 ES--------GAE-VESKLRRKEGFFIVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVTL 159
G E + S + K + S D + + D F ++ ++DE H +
Sbjct: 423 RPLHYYGFPVGREKLRSDIGTKCNLVVASYDTVR--KDIDFFSGIHFNYCVLDEGHIIKN 480
Query: 160 G-TQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQEFY 218
G T+ + +K L ++ + LS TP + + + + L P + K Q F
Sbjct: 481 GKTKSSKAIKRLKANHR----LILSGTPIQNNVLELWSLFDFLMPGFLGT-EKQFVQRFS 535
Query: 219 RRTMGTIIFRRTKSIVNELEGENIFRKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKNTQ 278
R + + R KS E E + + ++ + KE DVL L
Sbjct: 536 RPILSS---RDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKE------DVLKDLPPKIT 586
Query: 279 KNSPQALLAVLVNKRASSSYSSAMKTLNKIVESYSVREV--NLGKVRDYIERLFGLGYED 336
++ L + + S L+K+ +S S V NL + L L
Sbjct: 587 QDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVC 646
Query: 337 VNLEGFSEYDDVIDKIIEEYSAVLQESQVREFRELLDVLKRIKMDTKLNIVANVVKQHVE 396
+ + + + K+ + + E L LK++ +D + + V QH
Sbjct: 647 NHPKLVLRQSEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQH-- 704
Query: 397 RGEKVIIFTEFKDTLEY-----LRKNLPSLAGLSDEDVSILHGGMPSGKVEEEIRKFEKH 451
+ +IF + K L+ LR++LPS+ L L G +P+ + ++ + F
Sbjct: 705 ---RALIFCQLKAMLDIVEQDLLRRHLPSVTYLR------LDGSVPASQRQDIVNNFNSD 755
Query: 452 GK---LLISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFL 508
LL++T V GLNL A+ +I E W P+K Q + R RI QK+ V Y +
Sbjct: 756 PSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLI- 814
Query: 509 DTEVDMYVLNNLYRKIMNIKE 529
N+L KIM +++
Sbjct: 815 -------TRNSLEEKIMGLQK 828
>gb|AAF55260.1| (AE003711) Hel89B gene product [Drosophila melanogaster]
Length = 1861
Score = 74.5 bits (180), Expect = 5e-12
Identities = 113/501 (22%), Positives = 199/501 (39%), Gaps = 60/501 (11%)
Query: 54 IADEIGLGKTIQALAIARYLNLKGEAKRI-----LILVPKILREQWREEVERLGIIPIVI 108
+ D++GLGKT+Q + I ++ + + L++ P L W EVE+ V+
Sbjct: 1311 LCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVL 1370
Query: 109 ES--------GAE-VESKLRRKEGFFIVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVTL 159
G E + S + K + S D + + D F ++ ++DE H +
Sbjct: 1371 RPLHYYGFPVGREKLRSDIGTKCNLVVASYDTVR--KDIDFFSGIHFNYCVLDEGHIIKN 1428
Query: 160 G-TQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLLDPTLIDDYSKLDSQEFY 218
G T+ + +K L ++ + LS TP + + + + L P + K Q F
Sbjct: 1429 GKTKSSKAIKRLKANHR----LILSGTPIQNNVLELWSLFDFLMPGFLGT-EKQFVQRFS 1483
Query: 219 RRTMGTIIFRRTKSIVNELEGENIFRKCYFGAIVVGITEEEKEFFRRLNDVLSKLVKNTQ 278
R + + R KS E E + + ++ + KE DVL L
Sbjct: 1484 RPILSS---RDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKE------DVLKDLPPKIT 1534
Query: 279 KNSPQALLAVLVNKRASSSYSSAMKTLNKIVESYSVREV--NLGKVRDYIERLFGLGYED 336
++ L + + S L+K+ +S S V NL + L L
Sbjct: 1535 QDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVC 1594
Query: 337 VNLEGFSEYDDVIDKIIEEYSAVLQESQVREFRELLDVLKRIKMDTKLNIVANVVKQHVE 396
+ + + + K+ + + E L LK++ +D + + V QH
Sbjct: 1595 NHPKLVLRQSEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQH-- 1652
Query: 397 RGEKVIIFTEFKDTLEY-----LRKNLPSLAGLSDEDVSILHGGMPSGKVEEEIRKFEKH 451
+ +IF + K L+ LR++LPS+ L L G +P+ + ++ + F
Sbjct: 1653 ---RALIFCQLKAMLDIVEQDLLRRHLPSVTYLR------LDGSVPASQRQDIVNNFNSD 1703
Query: 452 GK---LLISTDVASEGLNLQVANVLINYEAPWTPIKLEQRVGRVWRINQKRDVKAYTIFL 508
LL++T V GLNL A+ +I E W P+K Q + R RI QK+ V Y +
Sbjct: 1704 PSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLI- 1762
Query: 509 DTEVDMYVLNNLYRKIMNIKE 529
N+L KIM +++
Sbjct: 1763 -------TRNSLEEKIMGLQK 1776
>pir||T45606 hypothetical protein F13G24.10 - Arabidopsis thaliana (fragment)
>gi|6562295|emb|CAB62593.1| (AL133421) putative protein
(fragment) [Arabidopsis thaliana]
Length = 786
Score = 72.2 bits (174), Expect = 3e-11
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 17/156 (10%)
Query: 46 IQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWREEVERLGIIP 105
++R R FIADE+GLGKT+QA+AIA +G IL++ P +LR W EE+ER +P
Sbjct: 216 LRRGGRCFIADEMGLGKTLQAIAIAGCFISEGS---ILVVCPAVLRFTWAEELERW--LP 270
Query: 106 IVIESGAEVESKLRRKEGFF-----IVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVTLG 160
+ S + + + +V I + R LE+EW L+I+DE+H++
Sbjct: 271 SCLPSDVHLVFGHQDNPAYLPRWPKVVVISYKMLQHLRTTMLEREWALLIVDESHHLRCS 330
Query: 161 TQR-----YEFVKDLVGKNKDLNVIFLSATPHRGDP 191
++ + V D+ K K ++I LS TP P
Sbjct: 331 KKKSDPPEIKTVLDVAEKVK--HIILLSGTPSVSRP 364
>dbj|BAB09945.1| (AB005249) contains similarity to HepA-related protein
Harp~gene_id:MXM12.5 [Arabidopsis thaliana]
Length = 1178
Score = 72.2 bits (174), Expect = 3e-11
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 17/156 (10%)
Query: 46 IQRPVRMFIADEIGLGKTIQALAIARYLNLKGEAKRILILVPKILREQWREEVERLGIIP 105
++R R FIADE+GLGKT+QA+AIA +G IL++ P +LR W EE+ER +P
Sbjct: 216 LRRGGRCFIADEMGLGKTLQAIAIAGCFISEGS---ILVVCPAVLRFTWAEELERW--LP 270
Query: 106 IVIESGAEVESKLRRKEGFF-----IVSIDLAKMPEHRDKFLEKEWDLVIIDEAHNVTLG 160
+ S + + + +V I + R LE+EW L+I+DE+H++
Sbjct: 271 SCLPSDVHLVFGHQDNPAYLPRWPKVVVISYKMLQHLRTTMLEREWALLIVDESHHLRCS 330
Query: 161 TQR-----YEFVKDLVGKNKDLNVIFLSATPHRGDP 191
++ + V D+ K K ++I LS TP P
Sbjct: 331 KKKSDPPEIKTVLDVAEKVK--HIILLSGTPSVSRP 364
>emb|CAC12619.1| (AL445067) RNA helicase (RIG-I) related protein [Thermoplasma
acidophilum]
Length = 508
Score = 71.0 bits (171), Expect = 6e-11
Identities = 121/526 (23%), Positives = 221/526 (42%), Gaps = 70/526 (13%)
Query: 31 IEPFLHQLQPLYHAMIQRPVRMFIADEIGLGKTI-QALAIARYLNLKGEAKRILILVPK- 88
I+P +QL +++ Q + I GLGKTI A+ I ++ GE KR L++ P
Sbjct: 3 IQPREYQLNVFKNSIGQNTL---IVMPTGLGKTIIAAMFIEKFY---GEKKRSLMVAPTK 56
Query: 89 -ILREQWREEVERLGIIPIVI-----ESGAEVESKLRRKEGFFIVSIDLAKMPEHRDKFL 142
++ + R + GI I E AE + + F VS + R L
Sbjct: 57 PLVLQHARTIADSTGISENEIGVFTGEIDAEERELIWVTKKIF-VSTPQVVFNDMRSGIL 115
Query: 143 E-KEWDLVIIDEAHNVTLGTQRYEFVKDLVGKNKDLNVIFLSATPHRGDPKDYLARLTLL 201
+ ++DL+I DEAH +G Y + K K +I L+A+P G ++ + + +
Sbjct: 116 DITKFDLIIFDEAHRA-VGNYAYVDIAQEYLKYKKKLIIGLTASP--GSSREKIDEI-MA 171
Query: 202 DPTLIDDYSKLDSQEFYRRTMGTIIFRRTKSIVNELEGENIFRKCYFGAIVVGITEEEKE 261
+ + +K + E R+ + TI + K + E +G KE
Sbjct: 172 NLGISKVIAKTEMDEDVRKYVKTIDVKLIK--IREPDGT-------------------KE 210
Query: 262 FFRRLNDVLSKLVKNTQKNSPQALLAVLVNKRASSSYSSAMKTLNKIVESYS----VREV 317
++ V+SKL++ + ++ + + ++ K +N E S VR +
Sbjct: 211 IVNMIDAVMSKLLEPVKSSN------FSIGRSRKDLVATMQKVINSAKEDRSLFQLVRRI 264
Query: 318 NLGKVRDYIERLFGLGYEDVNLEGFSEYDDVIDKIIEEYSAVLQESQVREFRELLDVLKR 377
DY++ DV L E + D I ++L S + EF L L
Sbjct: 265 TAAIRLDYLKEYIETQGIDVALHYLEEMEKSQDPGIRRAISML--SSLDEFATLRTKLML 322
Query: 378 IK---MDTKLNIVANVVKQHVERGEKVIIFTEFKDT----LEYLRKNLPSLAGLSDEDVS 430
+ K+ ++++ +V + I+FT ++ T ++Y++KN SL + +
Sbjct: 323 AADGYTNPKMEKTLSIMESNVHGNARAIVFTHYRITSDLLMDYIQKNGTSLKPV--RFIG 380
Query: 431 ILHGGMPSGKVEEEIRKFEKHGK-----LLISTDVASEGLNLQVANVLINYEAPWTPIKL 485
G G +++ +K + K +LI+T +A EGL++ + +I YEA + I+
Sbjct: 381 QADRGSDEGLSQDQQKKIIEDFKNNVYNVLIATSIAEEGLDIPDTDFVIFYEAVPSEIRY 440
Query: 486 EQRVGRVWRINQKRDVKAYTIFLDTEVDMYVLNNLYRKIMNIKEAI 531
QR GR R R+ + Y + + DM + RK+ + + I
Sbjct: 441 IQRKGRTGR---SRNGQVYILVFENSRDMAYYYSSIRKVSRMTQTI 483
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.141 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 352630748
Number of Sequences: 2977
Number of extensions: 15790317
Number of successful extensions: 46951
Number of sequences better than 1.0e-10: 27
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 46839
Number of HSP's gapped (non-prelim): 41
length of query: 973
length of database: 189,106,746
effective HSP length: 60
effective length of query: 913
effective length of database: 153,197,526
effective search space: 139869341238
effective search space used: 139869341238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 170 (70.6 bits)