BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0596 (fprA) DE:flavoprotein (fprA)
(409 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75136 flavoprotein (fpra) PAB0596 - Pyrococcus abyssi (str... 838 0.0
pir||B71103 probable flavoprotein - Pyrococcus horikoshii >gi|32... 734 0.0
pir||A72338 conserved hypothetical protein - Thermotoga maritima... 482 e-135
gi|11499115 flavoprotein (fprA-2) [Archaeoglobus fulgidus] >gi|7... 192 8e-48
sp|Q58142|Y732_METJA HYPOTHETICAL PROTEIN MJ0732 >gi|2127902|pir... 186 3e-46
gi|11497784 flavoprotein (fprA-1) [Archaeoglobus fulgidus] >gi|7... 186 5e-46
pir||E69076 flavoprotein A homolog (III) - Methanobacterium ther... 184 1e-45
gb|AAG00802.1| (AF202316) type a flavoprotein [Moorella thermoac... 183 2e-45
pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From ... 149 5e-35
pir||B65051 hypothetical protein b2710 - Escherichia coli (strai... 145 7e-34
sp|Q58158|Y748_METJA HYPOTHETICAL PROTEIN MJ0748 >gi|2127903|pir... 144 2e-33
pir||F64366 flavoprotein - Methanococcus jannaschii 142 6e-33
sp|Q57954|Y534_METJA HYPOTHETICAL PROTEIN MJ0534 >gi|2826294|gb|... 142 6e-33
gb|AAB88013.1| (U17835) flavoprotein [Methanobacterium thermoaut... 136 5e-31
dbj|BAA02789.2| (D13625) ORFU1 product, potential FMN-protein [R... 136 5e-31
pir||C69127 flavoprotein A homolog (II) - Methanobacterium therm... 134 2e-30
pir||S66533 flavoprotein A - Methanobacterium thermoautotrophicu... 131 2e-29
gb|AAB85827.1| (AE000898) flavoprotein AI [Methanobacterium ther... 131 2e-29
pir||S75748 flavoprotein, 63.5K - Synechocystis sp. (strain PCC ... 122 8e-27
pir||S39896 flavoprotein homolog orf14 - Rhodobacter capsulatus ... 115 8e-25
pir||S74578 probable flavoprotein, 64K - Synechocystis sp. (stra... 109 6e-23
dbj|BAA05933.1| (D28595) unknown [Escherichia coli] 80 6e-14
pir||S76209 probable flavoprotein, 65K - Synechocystis sp. (stra... 75 2e-12
>pir||A75136 flavoprotein (fpra) PAB0596 - Pyrococcus abyssi (strain Orsay)
>gi|5458313|emb|CAB49802.1| (AJ248285) flavoprotein
(fprA) [Pyrococcus abyssi]
Length = 409
Score = 838 bits (2141), Expect = 0.0
Identities = 409/409 (100%), Positives = 409/409 (100%)
Query: 1 MVKVWIEKLLEEPELYLLRVDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKD 60
MVKVWIEKLLEEPELYLLRVDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKD
Sbjct: 1 MVKVWIEKLLEEPELYLLRVDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKD 60
Query: 61 YTEEFIEALSSLVDPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGF 120
YTEEFIEALSSLVDPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGF
Sbjct: 61 YTEEFIEALSSLVDPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGF 120
Query: 121 YGSDVVKNFHVVRDGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGI 180
YGSDVVKNFHVVRDGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGI
Sbjct: 121 YGSDVVKNFHVVRDGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGI 180
Query: 181 PRAIDDSDEEVVKEYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLI 240
PRAIDDSDEEVVKEYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLI
Sbjct: 181 PRAIDDSDEEVVKEYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLI 240
Query: 241 WRRNPVRIFEHYERVGAGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFT 300
WRRNPVRIFEHYERVGAGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFT
Sbjct: 241 WRRNPVRIFEHYERVGAGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFT 300
Query: 301 DKEAPAVSDILGEVPDSEALIIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGW 360
DKEAPAVSDILGEVPDSEALIIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGW
Sbjct: 301 DKEAPAVSDILGEVPDSEALIIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGW 360
Query: 361 GGVAGKKIETLISRSKFELVEVVETKGRPTEEDKEKLREAVRRLIQWIS 409
GGVAGKKIETLISRSKFELVEVVETKGRPTEEDKEKLREAVRRLIQWIS
Sbjct: 361 GGVAGKKIETLISRSKFELVEVVETKGRPTEEDKEKLREAVRRLIQWIS 409
>pir||B71103 probable flavoprotein - Pyrococcus horikoshii
>gi|3257501|dbj|BAA30184.1| (AP000004) 411aa long
hypothetical flavoprotein [Pyrococcus horikoshii]
Length = 411
Score = 734 bits (1874), Expect = 0.0
Identities = 339/407 (83%), Positives = 382/407 (93%)
Query: 1 MVKVWIEKLLEEPELYLLRVDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKD 60
MVKVW+EKLL+EPELY+LR+DD I++FEA W IPEGITYNAYLMK+ D V+LFD WK +
Sbjct: 3 MVKVWVEKLLDEPELYILRLDDSEIKHFEAAWSIPEGITYNAYLMKVGDAVVLFDTWKGE 62
Query: 61 YTEEFIEALSSLVDPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGF 120
YTE+F+E+LS+LVDPKEITHI+VHHTEPDH+GALPKLLELNEY+A++IGT FAKNLLQGF
Sbjct: 63 YTEKFLESLSTLVDPKEITHIIVHHTEPDHSGALPKLLELNEYRAKLIGTTFAKNLLQGF 122
Query: 121 YGSDVVKNFHVVRDGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGI 180
YG VV+NFH ++DGEEVKIG+RTFRFITVPWLHWPDTMITY +EDKLIFSCDAGGGYGI
Sbjct: 123 YGDKVVENFHTIKDGEEVKIGNRTFRFITVPWLHWPDTMITYDVEDKLIFSCDAGGGYGI 182
Query: 181 PRAIDDSDEEVVKEYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLI 240
P AIDDSDE+VVK+YLPYVTKYIVTVIGHYHKYIVQNIKKLK LGIIE+ MILPGHGLI
Sbjct: 183 PEAIDDSDEDVVKKYLPYVTKYIVTVIGHYHKYIVQNIKKLKELGIIENANMILPGHGLI 242
Query: 241 WRRNPVRIFEHYERVGAGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFT 300
WR++P RIFEHYERVGAGIPTKDKVLV+YDSMYGFVE+RM VVIEEL++Y KKPV+YRFT
Sbjct: 243 WRKSPTRIFEHYERVGAGIPTKDKVLVIYDSMYGFVEKRMSVVIEELKRYGKKPVVYRFT 302
Query: 301 DKEAPAVSDILGEVPDSEALIIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGW 360
DKE PA+SDILGEVPDSEAL+IGVSTYEAD+HPR+R LYEILDKANY+KPVLIVGAFGW
Sbjct: 303 DKENPAISDILGEVPDSEALVIGVSTYEADIHPRMRCALYEILDKANYEKPVLIVGAFGW 362
Query: 361 GGVAGKKIETLISRSKFELVEVVETKGRPTEEDKEKLREAVRRLIQW 407
GGVAGKK+ETLISRSKFELV+VVETKGR T ED+E+LREAVR+LIQW
Sbjct: 363 GGVAGKKVETLISRSKFELVDVVETKGRMTSEDEERLREAVRKLIQW 409
>pir||A72338 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981282|gb|AAD35837.1|AE001745_4 (AE001745)
conserved hypothetical protein [Thermotoga maritima]
Length = 398
Score = 482 bits (1227), Expect = e-135
Identities = 221/404 (54%), Positives = 300/404 (73%), Gaps = 11/404 (2%)
Query: 1 MVKVWIEKLLEEPELYLLRVDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKD 60
M K+W E++ ++PE+Y+LR+DDDRIRYFEA W+IPEGI+YNAYL+KL +L D WK +
Sbjct: 1 MPKIWTERIFDDPEIYVLRIDDDRIRYFEAVWEIPEGISYNAYLVKLNGANVLIDGWKGN 60
Query: 61 YTEEFIEALSSLVDPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGF 120
Y +EFI+ALS +VDPKEITHI+V+HTEPDH+G+LP L+ + +II +NF K LL+GF
Sbjct: 61 YAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIASNFGKRLLEGF 120
Query: 121 YGSDVVKNFHVVRDGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGI 180
YG +K+ VV+DGEE +IG + F+F+ PWLHWPDTM+TY+ D ++FSCD GGGY +
Sbjct: 121 YG---IKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYL--DGILFSCDVGGGYLL 175
Query: 181 PRAIDDSDEEVVKEYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLI 240
P +DDS+E VV+ YLP+VTKYIVTVIGHY YI++ +KL SL ++ +LPGHGLI
Sbjct: 176 PEILDDSNESVVERYLPHVTKYIVTVIGHYKNYILEGAEKLSSL----KIKALLPGHGLI 231
Query: 241 WRRNPVRIFEHYERVGAGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFT 300
W+++P R+ HY V G P K KV V+YDSMYGFVE MK I+ L++ PV+Y+F+
Sbjct: 232 WKKDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFS 291
Query: 301 DKEAPAVSDILGEVPDSEALIIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGW 360
D+E PA+S+IL ++PDSEALI GVSTYEA++HP +R+TL EI+DKANY+KPVL+ G GW
Sbjct: 292 DEERPAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHGW 351
Query: 361 GGVAGKKIETLISRSKFELVEVVETKGRPTEEDKEKLREAVRRL 404
A + L+ +KF ++ E KG + D+ K+ EA+ L
Sbjct: 352 APSAERTAGELLKETKFRILSFTEIKG--SNMDERKIEEAISLL 393
>gi|11499115 flavoprotein (fprA-2) [Archaeoglobus fulgidus]
>gi|7483303|pir||G69439 flavoprotein (fprA-2) homolog -
Archaeoglobus fulgidus >gi|2649041|gb|AAB89726.1|
(AE000997) flavoprotein (fprA-2) [Archaeoglobus
fulgidus]
Length = 488
Score = 192 bits (482), Expect = 8e-48
Identities = 118/368 (32%), Positives = 199/368 (54%), Gaps = 11/368 (2%)
Query: 37 GITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLVDPKEITHIVVHHTEPDHTGALPK 96
G+TYN+YL+ + D V+L D K + +E +E + LVDP +I +++V+H EPDH+ LP
Sbjct: 130 GLTYNSYLI-VDDKVVLVDTVKHKFVKESMERIRKLVDPSQIDYVIVNHIEPDHSSGLPD 188
Query: 97 LLELNEYKAQIIGTNFAKNLLQGFYGSDVVKNFHVVRDGEEVKIGDRTFRFITVPWLHWP 156
+ + + A ++ T AK+ + +Y D N VV+ G+ +KIG RT FI + LHWP
Sbjct: 189 TMRIAK-DATVVCTQRAKDGICKYYDCDGW-NIQVVKGGDTLKIGKRTLTFIDMTMLHWP 246
Query: 157 DTMITYVIEDKLIFSCDAGGGYGIPRAIDDSDEEVVKEYLPYVTKYIVTVIGHYHKYIVQ 216
D+M TY+ EDK++ S DA G + + +E V+E L + Y ++ I +
Sbjct: 247 DSMATYINEDKILLSNDAFGQH-VASEYRFDEEIGVEEALKWAKVYYANILMPLGGLIQK 305
Query: 217 NIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYERVGAGIPTKDKVLVLYDSMYGFV 276
+K++K G+ + +I P HG++W +NP RI E Y+R PT +KV++++DSM+
Sbjct: 306 KLKEIKESGL--EIDIIAPSHGVVW-KNPGRIIEAYDRWSRFEPT-NKVVIVFDSMWHST 361
Query: 277 EERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVPDSEALIIGVSTYEADVHPRIR 336
E+ + E + R +DI+ E+ D++A+ +G T + P +
Sbjct: 362 EKLAMAIAEGA---GSEGADVRVMHIRKDYWTDIVTEILDAKAIAVGSPTIHNGLFPTVA 418
Query: 337 YTLYEILDKANYDKPVLIVGAFGWGGVAGKKIETLISRSKFELVEVVETKGRPTEEDKEK 396
L + +K L G++GW G A K+++ ++ KFE +E K +P+EE+ +K
Sbjct: 419 GFLTYLKGLKPQNKKALAFGSYGWNGNAVKEVQKVLEELKFETLEPFMVKFKPSEEELQK 478
Query: 397 LREAVRRL 404
E R L
Sbjct: 479 AFELGREL 486
>sp|Q58142|Y732_METJA HYPOTHETICAL PROTEIN MJ0732 >gi|2127902|pir||D64391 flavoprotein -
Methanococcus jannaschii >gi|1591446|gb|AAB98728.1|
(U67519) flavoprotein (fprA) [Methanococcus jannaschii]
Length = 393
Score = 186 bits (468), Expect = 3e-46
Identities = 126/393 (32%), Positives = 207/393 (52%), Gaps = 19/393 (4%)
Query: 15 LYLLRVDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKDYT-EEFIEALSSLV 73
+Y + V D IR F + P G TYN+YL+K K V++ A KDY E I +S +
Sbjct: 12 IYWVGVIDWEIRDFHG-YGTPYGSTYNSYLIKDKKNVLIDTA--KDYMFNELIYGISKFI 68
Query: 74 DPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVKNFHVVR 133
DPK++ +I+V+H E DH+G + KL+E++ A II K L +Y + +F +V
Sbjct: 69 DPKDLDYIIVNHVEKDHSGCVDKLVEISN--ATIITNEKGKEHLSLYYDTKDW-DFIIVD 125
Query: 134 DGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGIPRAIDDSDEEVVK 193
G+E+ IGDRT +FI P LHWPD M+TY E+K++FS DA G + + + D E+ +
Sbjct: 126 TGDEINIGDRTLKFIRTPMLHWPDNMLTYCKEEKILFSNDAFGQH--IASSERFDYEIGE 183
Query: 194 EYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYE 253
+ Y ++ Y I IK +K+L + +I P HG+IW+ I E Y
Sbjct: 184 GIFEHAKDYFANILMPYKMLIPDAIKAVKNL----DIELICPSHGVIWKEYINEIIEKYN 239
Query: 254 RVGAGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGE 313
A TK+K +++YD+MY ++ + E L + + IYR + ++S I+ E
Sbjct: 240 E-WAMNKTKNKAVIVYDTMYNSTKKMAHAIAEGLMEKGVEVKIYRVCE---TSLSRIMTE 295
Query: 314 VPDSEALIIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGWGGVAGKKIETLIS 373
+ D++ +++G T +++P + L + DK + G++GW A +KI+ +
Sbjct: 296 ILDAKYVLVGSPTVNRNLYPEVGKFLAYMDCIRPLDKIGVAFGSYGWMECATEKIKEIFK 355
Query: 374 RSKFELV--EVVETKGRPTEEDKEKLREAVRRL 404
F++V E + + P EE +K E +RL
Sbjct: 356 NLGFKIVDDECLTVRFAPKEEHLKKCYEFGKRL 388
>gi|11497784 flavoprotein (fprA-1) [Archaeoglobus fulgidus]
>gi|7446595|pir||G69270 flavoprotein (fprA-1) homolog -
Archaeoglobus fulgidus >gi|2650474|gb|AAB91061.1|
(AE001094) flavoprotein (fprA-1) [Archaeoglobus
fulgidus]
Length = 336
Score = 186 bits (467), Expect = 5e-46
Identities = 107/328 (32%), Positives = 184/328 (55%), Gaps = 18/328 (5%)
Query: 78 ITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVKN-FHVVRDGE 136
I ++V++H EPDH GA+P ++E ++ A ++ T + + +Y DV ++ VV DGE
Sbjct: 20 IDYVVMNHAEPDHAGAIPFIMESSD--ALLVTTKKGAEMAKFYY--DVPESRVRVVEDGE 75
Query: 137 EVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGIPRAIDDSDEEVVKEYL 196
E+ +G++T RFI PWLHWP+TM TY++ED ++F CD +G A D+E V E L
Sbjct: 76 EISLGEKTLRFIHAPWLHWPETMFTYLVEDGILFPCDF---FGCHTAYGFYDDE-VPEIL 131
Query: 197 PYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYERVG 256
Y +Y ++ + + ++K+K L + MI P HG I+ RN +I YE+
Sbjct: 132 YYAQRYFGEIMMPFRSMGKKALEKIKGL----KINMIAPSHGPIY-RNLEKILSAYEKWT 186
Query: 257 AGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVPD 316
AG T++KVLV+Y +M+G E + ++ E L K K ++ + + +I ++ D
Sbjct: 187 AG-ETEEKVLVVYATMWGSTERMVNLLTELLMKEGLKVAVHNLASAD---IGEIAKDLVD 242
Query: 317 SEALIIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGWGGVAGKKIETLISRSK 376
S A+++G T +HP + + + ++ +FGWGG A K+IE ++S
Sbjct: 243 SRAIVLGTPTVLGGMHPLALFAANLVKALRPPARYAAVLSSFGWGGGAVKQIEEIVSSLN 302
Query: 377 FELVEVVETKGRPTEEDKEKLREAVRRL 404
E++ VVE + +P++ D EK+R+ ++
Sbjct: 303 LEVLGVVEVRAKPSDSDLEKVRKLAEKI 330
>pir||E69076 flavoprotein A homolog (III) - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621199|gb|AAB84663.1| (AE000804)
flavoprotein A homolog (III) [Methanobacterium
thermoautotrophicum]
Length = 385
Score = 184 bits (463), Expect = 1e-45
Identities = 119/398 (29%), Positives = 199/398 (49%), Gaps = 23/398 (5%)
Query: 8 KLLEEPELYLLRVDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKDYTEEFIE 67
K + + Y +D DR R F+ +P G +YN+YL+ L D + E +
Sbjct: 4 KRIADGVYYTGTIDWDR-RTFDELVTLPRGTSYNSYLISGTSATALIDTTEPSRAAELLR 62
Query: 68 ALSSLVDPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVK 127
L + +I +IV H E DH+G +P+LLE+ +A++IGT LLQ +
Sbjct: 63 TLEEM--DADIKYIVSQHAEQDHSGTIPELLEIYP-EAEVIGTPACIELLQELLR--ING 117
Query: 128 NFHVVRDGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGIPRAIDDS 187
NF V+DGE + +GDRT RFI PW+HWPDTM+TY+ ED ++F+CD G + I ++
Sbjct: 118 NFREVKDGESLSLGDRTLRFIVTPWVHWPDTMVTYLEEDGILFTCDFFGSHIATSDIMET 177
Query: 188 DEEVVKEYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVR 247
++ ++E +Y ++ + + + N++K+ L V MI P HG + P
Sbjct: 178 PDDFLRE----AKRYYAHIMMPFSQMVASNLRKISEL----EVSMIAPSHGPV-ISEPGL 228
Query: 248 IFEHYERVGAGIPTKDKVLVLYDSMYGFVEERMKVVIEEL-RKYNKKPVIYRFTDKEAPA 306
I + Y+ +G D V++ Y +M+G +V++E L K + V R +
Sbjct: 229 IMDAYDTWTSG---GDGVVIAYTTMHG----STRVMVERLTEKLMELDVSVRPVNVAEHD 281
Query: 307 VSDILGEVPDSEALIIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGWGGVAGK 366
+ L E+ D+ L++ T HP I LY + + V ++G++GWG +
Sbjct: 282 TGEFLTELVDASVLVVASPTVLTRPHPAIASVLYLVNALRPPLRHVAVMGSYGWGSLIES 341
Query: 367 KIETLISRSKFELVEVVETKGRPTEEDKEKLREAVRRL 404
++ L+S E +E V KG P EED +++ E ++
Sbjct: 342 EVRKLLSNLNVEYLESVLVKGLPVEEDLQRVDELAMKI 379
>gb|AAG00802.1| (AF202316) type a flavoprotein [Moorella thermoacetica]
Length = 399
Score = 183 bits (461), Expect = 2e-45
Identities = 117/393 (29%), Positives = 204/393 (51%), Gaps = 13/393 (3%)
Query: 15 LYLLRVDDDRIRYFEA-TWDIPEGITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLV 73
+Y + D IRYF + G TYNAYL+ + D L D + + EE I L +
Sbjct: 11 IYWVGAVDWNIRYFHGPAFSTHRGTTYNAYLI-VDDKTALVDTVYEPFKEELIAKLKQIK 69
Query: 74 DPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVKNFHVVR 133
DP ++ ++VV+HTE DH GA P ++EL A ++ T A + L+ Y S + N+ +V+
Sbjct: 70 DPVKLDYLVVNHTESDHAGAFPAIMELCP-DAHVLCTQRAFDSLKAHY-SHIDFNYTIVK 127
Query: 134 DGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGIPRAIDDSDEEVVK 193
G V +G R+ FI P LHWPD+M TYV E+ L+ DA G + I ++ D+
Sbjct: 128 TGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQH-IATSVRFDDQVDAG 186
Query: 194 EYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYE 253
+ KY ++ + I + + +++ + + +++ I P HG+IWR++P RI E Y
Sbjct: 187 LIMDEAAKYYANILMPFSNLITKKLDEIQKINL--AIKTIAPSHGIIWRKDPGRIIEAYA 244
Query: 254 RVGAGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGE 313
R G K K ++ YD+M+ E+ +++ L + +++ + + +D++ E
Sbjct: 245 RWAEG-QGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDR---NDVIKE 300
Query: 314 VPDSEALIIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGWGGVAGKKIETLIS 373
+ D+ A+++G T D+ P + L +++ +K L GA+GWGG A K +E +
Sbjct: 301 ILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLK 360
Query: 374 RSKFELVEV--VETKGRPTEEDKEKLREAVRRL 404
+K EL+ + P ED ++ E R++
Sbjct: 361 AAKIELIAEPGPTVQWVPRGEDLQRCYELGRKI 393
>pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas >gi|11513649|pdb|1E5D|B Chain B,
Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
>gi|11385418|gb|AAG34792.1|AF218053_1 (AF218053)
rubredoxin-oxygen oxidoreductase [Desulfovibrio gigas]
Length = 402
Score = 149 bits (373), Expect = 5e-35
Identities = 108/367 (29%), Positives = 181/367 (48%), Gaps = 13/367 (3%)
Query: 35 PEGITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLVDPKEITHIVVHHTEPDHTGAL 94
P G TYNAYL++ + LFD K +Y E + ++S++DPK+I ++V+ H E DH GAL
Sbjct: 30 PMGTTYNAYLVE-DEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGAL 88
Query: 95 PKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVKNFHVVRDGEEVKIGDRTFRFITVPWLH 154
P L+E + + + K + F+ D VV+ GE + +G RT F LH
Sbjct: 89 PALIEACQPEKIFTSSLGQKAMESHFHYKD--WPVQVVKHGETLSLGKRTVTFYETRMLH 146
Query: 155 WPDTMITYVIEDKLIFSCDAGGGYGIPRAIDDSDEEVVKEYLPYVTKYIVTVIGHYHKYI 214
WPD+M+++ ++K++ S D G I + SD+ V + +Y ++ Y
Sbjct: 147 WPDSMVSWFADEKVLISNDI-FGQNIAASERFSDQIPVHTLERAMREYYANIVNPYAPQT 205
Query: 215 VQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIF--EHYERVGAGIPTKDKVLVLYDSM 272
++ I+ L G+ + I P HG+I+R F + Y PT +KV++ YDSM
Sbjct: 206 LKAIETLVGAGV--APEFICPDHGVIFRGADQCTFAVQKYVEYAEQKPT-NKVVIFYDSM 262
Query: 273 YGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVPDSEALIIGVSTYEADVH 332
+ E+ +V+ E R + + +A S I+ E+ D+ A+I+G T+ +
Sbjct: 263 WHSTEKMARVLAESFR---DEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGIL 319
Query: 333 PRIRYTLYEILDKANYDKPVLIVGAFGWGGVAGKKIETLISRSKFEL-VEVVETKGRPTE 391
P + TL I +K G+FGW G + K + ++ F++ V+ K PT
Sbjct: 320 PYVAGTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTH 379
Query: 392 EDKEKLR 398
D E+L+
Sbjct: 380 ADYEQLK 386
>pir||B65051 hypothetical protein b2710 - Escherichia coli (strain K-12)
>gi|882603|gb|AAA69220.1| (U29579) ORF_o479 [Escherichia
coli] >gi|1789064|gb|AAC75752.1| (AE000355) putative
flavodoxin [Escherichia coli K12]
Length = 479
Score = 145 bits (363), Expect = 7e-34
Identities = 107/393 (27%), Positives = 192/393 (48%), Gaps = 19/393 (4%)
Query: 22 DDRIRYFEAT-WDIPEGITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLVDPKEITH 80
D +R F T + G +YN+YL++ ++ +L D ++ EF++ L + +D +I +
Sbjct: 16 DWEVRDFHGTEYKTLRGSSYNSYLIR-EEKNVLIDTVDHKFSREFVQNLRNEIDLADIDY 74
Query: 81 IVVHHTEPDHTGALPKLLELNEYKAQIIGTNF--AKNLLQGFYG--SDVVKNFHVVRDGE 136
IV++H E DH GAL +L+ AQI T N + G NF+VV+ G+
Sbjct: 75 IVINHAEEDHAGALTELM------AQIPDTPIYCTANAIDSINGHHHHPEWNFNVVKTGD 128
Query: 137 EVKIGD-RTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGIPRAIDDSDEEVVKEY 195
+ IG+ + F+ P LHWPD+M+TY+ D ++FS DA G + + +DE E
Sbjct: 129 TLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHL-FNDEVDQTEL 187
Query: 196 LPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYERV 255
+Y ++ + + + I ++ LG V MI HG++WR NP +I E Y +
Sbjct: 188 FEQCQRYYANILTPFSRLVTPKITEI--LGFNLPVDMIATSHGVVWRDNPTQIVELYLKW 245
Query: 256 GAGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVP 315
A +D++ + YD+M + + + + + + + F + ++IL V
Sbjct: 246 AADY-QEDRITIFYDTMSNNTRMMADAIAQGIAETDPRVAVKIFNVARSDK-NEILTNVF 303
Query: 316 DSEALIIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGWGGVAGKKIETLISRS 375
S+ +++G ST + P+I + E+ +K G+ GW G A ++ T + +
Sbjct: 304 RSKGVLVGTSTMNNVMMPKIAGLVEEMTGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDA 363
Query: 376 KFELVEVVETKGRPTEEDKEKLREAVRRLI-QW 407
FE+ ++ K RP ++ + RE R + QW
Sbjct: 364 GFEMSLSLKAKWRPDQDALKLCREHGREIARQW 396
>sp|Q58158|Y748_METJA HYPOTHETICAL PROTEIN MJ0748 >gi|2127903|pir||D64393 flavoprotein -
Methanococcus jannaschii >gi|1591461|gb|AAB98741.1|
(U67520) flavoprotein (fpaA) [Methanococcus jannaschii]
Length = 416
Score = 144 bits (360), Expect = 2e-33
Identities = 104/378 (27%), Positives = 184/378 (48%), Gaps = 21/378 (5%)
Query: 32 WDIP-------EGITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLVDPK----EITH 80
WDI +G TYNAYL+ + V L D + + + + + +I
Sbjct: 23 WDIRMYHGYTLKGTTYNAYLVFGDEKVALIDNTYPGTSAQMWGRIKDAFEKEGREFKIDV 82
Query: 81 IVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVKNFHVVRDGEEVKI 140
IV +H E DH+GALP++ + A I T A L+ Y S F VV G+ V +
Sbjct: 83 IVQNHVEKDHSGALPEIHKKFP-DAPIYCTEVAVEGLKKHYPSLKDAQFKVVHTGDTVDL 141
Query: 141 GDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGIPRAIDDSDEEVVKEYLPYVT 200
G +T F+ P LHWPD+M T+ E ++FS DA G + A D+++ + L
Sbjct: 142 GGKTLTFLEAPLLHWPDSMFTFYNEGGILFSNDAFGQHLCFPAHKRFDKDIPEYVLMDAN 201
Query: 201 -KYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYERVGAGI 259
K+ +I K +++ +++ LG++E ++MI P HG IW +P+++ + Y+ G
Sbjct: 202 QKFYANLITPLSKLVLKKFEEVIQLGLLEKIKMIAPSHGQIW-TDPMKVIKAYQDFATGK 260
Query: 260 PTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVPDSEA 319
KDK +++YD+M+ ++ E L V+Y E S+I+ ++ D++A
Sbjct: 261 AAKDKAVIVYDTMHYSTQKMAHAFAEGLMSEGIDVVMYFLHYDER---SEIVKDILDAKA 317
Query: 320 LIIGVSTYEADVHPRIRYTLYEI----LDKANYDKPVLIVGAFGWGGVAGKKIETLISRS 375
++ G+ T + +P I +Y + ++ + + + G+ G G A KI +++
Sbjct: 318 VLFGIPTIYDEPYPSIGDIIYYLRGLKFNRTGFKRLAVTFGSMGGEGGAVAKIAEDLAKC 377
Query: 376 KFELVEVVETKGRPTEED 393
FE++ E PTE++
Sbjct: 378 GFEVINQYELYYVPTEDE 395
>pir||F64366 flavoprotein - Methanococcus jannaschii
Length = 391
Score = 142 bits (355), Expect = 6e-33
Identities = 112/407 (27%), Positives = 208/407 (50%), Gaps = 24/407 (5%)
Query: 1 MVKVWIEKLLEEPELYLLRVDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKD 60
MVK + K+ + +Y + + +I+ + DI +G TYN+YL+ K+ VI+ D +
Sbjct: 1 MVKYMVLKIKDN--IYCMSFIEWKIKEYRGL-DIEKGTTYNSYLILDKNNVII-DTTRIK 56
Query: 61 YTEEFIEALSSLVDPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGF 120
Y +E + L + + K + +I+ +H PDH + KL+EL E A+I+ T K L
Sbjct: 57 YFDELLSYLKDVANLK-LDYIISNHISPDHNECIEKLIELTE--AKIVTTKIRKYYLDAQ 113
Query: 121 YGSDVVKNFHVVRDGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGI 180
+ + + F +V++G+E+ IG+RT +FIT + M+TY +EDK++FS D + +
Sbjct: 114 FNTKDWE-FVIVKNGDELNIGNRTLKFITDDKCEY---MLTYCVEDKILFSNDLFSQHVV 169
Query: 181 PRAIDDSDEEVVKEYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLI 240
+ DSD + + + +Y ++ Y K I++ + LK L + I P HG+I
Sbjct: 170 YKEKIDSD--IGHKIMLDAKEYFANILLPYRKSILKILNILKDL----DLEYICPSHGVI 223
Query: 241 WRRNPVRIFEHYERVGAGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFT 300
W I Y R+ K+ +++Y ++Y E+ K + E L + + +R
Sbjct: 224 WHIMIDEILTKY-RMWCSDSYKNTAVIVYATIYSSTEKIAKALGEGLSEEGVDVIYHRL- 281
Query: 301 DKEAPAVSDILGEVPDSEALIIGVSTYEADVHPRIRYTLYEILD-KANYDKPVLIVGAFG 359
+ ++ I+ ++ D++ +++G T +VHP++ L I K + K + G++G
Sbjct: 282 --DTSPLNIIMRDILDAKYVLVGSPTINMNVHPKVGMLLTYIEGLKPSNKKIGVXFGSYG 339
Query: 360 WGGVAGKKIETLISRSKFELVE--VVETKGRPTEEDKEKLREAVRRL 404
W A KKI R F++V+ ++ + P E D +K++E R+L
Sbjct: 340 WKECATKKIIEAFKRLGFKIVDDKILTFRFAPKENDIKKIKEFGRKL 386
>sp|Q57954|Y534_METJA HYPOTHETICAL PROTEIN MJ0534 >gi|2826294|gb|AAB98525.1| (U67502)
flavoprotein (fprA) [Methanococcus jannaschii]
Length = 391
Score = 142 bits (355), Expect = 6e-33
Identities = 112/407 (27%), Positives = 208/407 (50%), Gaps = 24/407 (5%)
Query: 1 MVKVWIEKLLEEPELYLLRVDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKD 60
MVK + K+ + +Y + + +I+ + DI +G TYN+YL+ K+ VI+ D +
Sbjct: 1 MVKYMVLKIKDN--IYCMSFIEWKIKEYRGL-DIEKGTTYNSYLILDKNNVII-DTTRIK 56
Query: 61 YTEEFIEALSSLVDPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGF 120
Y +E + L + + K + +I+ +H PDH + KL+EL E A+I+ T K L
Sbjct: 57 YFDELLSYLKDVANLK-LDYIISNHISPDHNECIEKLIELTE--AKIVTTKIRKYYLDAQ 113
Query: 121 YGSDVVKNFHVVRDGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGI 180
+ + + F +V++G+E+ IG+RT +FIT + M+TY +EDK++FS D + +
Sbjct: 114 FNTKDWE-FVIVKNGDELNIGNRTLKFITDDKCEY---MLTYCVEDKILFSNDLFSQHVV 169
Query: 181 PRAIDDSDEEVVKEYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLI 240
+ DSD + + + +Y ++ Y K I++ + LK L + I P HG+I
Sbjct: 170 YKEKIDSD--IGHKIMLDAKEYFANILLPYRKSILKILNILKDL----DLEYICPSHGVI 223
Query: 241 WRRNPVRIFEHYERVGAGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFT 300
W I Y R+ K+ +++Y ++Y E+ K + E L + + +R
Sbjct: 224 WHIMIDEILTKY-RMWCSDSYKNTAVIVYATIYSSTEKIAKALGEGLSEEGVDVIYHRL- 281
Query: 301 DKEAPAVSDILGEVPDSEALIIGVSTYEADVHPRIRYTLYEILD-KANYDKPVLIVGAFG 359
+ ++ I+ ++ D++ +++G T +VHP++ L I K + K + G++G
Sbjct: 282 --DTSPLNIIMRDILDAKYVLVGSPTINMNVHPKVGMLLTYIEGLKPSNKKIGVAFGSYG 339
Query: 360 WGGVAGKKIETLISRSKFELVE--VVETKGRPTEEDKEKLREAVRRL 404
W A KKI R F++V+ ++ + P E D +K++E R+L
Sbjct: 340 WKECATKKIIEAFKRLGFKIVDDKILTFRFAPKENDIKKIKEFGRKL 386
>gb|AAB88013.1| (U17835) flavoprotein [Methanobacterium thermoautotrophicum]
Length = 404
Score = 136 bits (339), Expect = 5e-31
Identities = 102/379 (26%), Positives = 181/379 (46%), Gaps = 21/379 (5%)
Query: 36 EGITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLVDP------KEITHIVVHHTEPD 89
+G TYNAYL+ + V L D Y F E ++ + D + + +I+ +H E D
Sbjct: 31 QGTTYNAYLVCGDEGVALID---NSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKD 87
Query: 90 HTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVKNFHVVRDGEEVKIGDRTFRFIT 149
H+G L +L +A I T A L Y S F V+ G+ + +G +T F+
Sbjct: 88 HSGVLVEL-HRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLE 146
Query: 150 VPWLHWPDTMITYVIEDKLIFSCDAGGGY-GIPRAIDDSDEEVVKEYLPYVTKYIVTVIG 208
P LHWPD+M T + ED ++FS DA G + P+ +D E + + K+ +I
Sbjct: 147 TPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYI--LMDAARKFYANLIT 204
Query: 209 HYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYERVGAGIPTKDKVLVL 268
K +++ ++K LG++E ++MI P HG IW +P++I E Y G+ ++V V+
Sbjct: 205 PLSKLVLKKFDEVKELGLLERIQMIAPSHGQIW-TDPMKIIEAYTGWATGM-VDERVTVI 262
Query: 269 YDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVPDSEALIIGVSTYE 328
YD+M+G + + E +Y + + S+I+ ++ +S A+ +G T
Sbjct: 263 YDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDR---SEIVKDILESGAIALGAPTIY 319
Query: 329 ADVHPRIRYTLYEILD---KANYDKPVLIVGAFGWGGVAGKKIETLISRSKFELVEVVET 385
+ +P + L + + L+ G+ G G A ++ L++ + F++ E
Sbjct: 320 DEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEV 379
Query: 386 KGRPTEEDKEKLREAVRRL 404
PT ++ + EA R+L
Sbjct: 380 YYVPTGDELDACFEAGRKL 398
>dbj|BAA02789.2| (D13625) ORFU1 product, potential FMN-protein [Rhodobacter
capsulatus]
Length = 435
Score = 136 bits (339), Expect = 5e-31
Identities = 102/400 (25%), Positives = 183/400 (45%), Gaps = 19/400 (4%)
Query: 13 PELYLLRVDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSL 72
P ++ + D +R F+ G TYNAY ++ + V + D K ++ +F L ++
Sbjct: 26 PGVHWVGALDPGLRNFDVILKTANGTTYNAYAVRGSEGVAVIDTVKAEFAGDFFARLEAV 85
Query: 73 VDPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVK-NFHV 131
EI IV++H EPDHTGA+P+LL +AQ+ + +L+ D + +
Sbjct: 86 ARYDEIRLIVLNHLEPDHTGAVPELLR-RAPQAQVRLSPRGLPMLRALLKDDFERYDIKG 144
Query: 132 VRDGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDA-GGGYGIPRAIDDSDEE 190
V G+ V +GDR +F T P++HWPDT T++ ++++F+CD G Y R +D
Sbjct: 145 VTTGQSVSLGDRDLQFFTTPFVHWPDTQCTWLAAERVLFTCDLFGSHYCDGRLFND---- 200
Query: 191 VVKEYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFE 250
+V ++ Y ++ + ++ Q + ++ L +I P HG I R +P
Sbjct: 201 LVGDFRFSFEYYFDRIMRPFRSFVAQALDLIEPL----DFGIIAPAHGPILRSHPRDYLT 256
Query: 251 H-----YERVGAGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAP 305
H R+ A ++ +L+ Y S YG + + + + + V D E
Sbjct: 257 HTRRLISSRLAAETGSEKTLLIFYVSAYGATAQLAQAIHDGAAE--SPDVRVSLFDLEGG 314
Query: 306 AVSDILGEVPDSEALIIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGWGGVAG 365
++ L + +++ + +G T D I L ++D K G++GW G A
Sbjct: 315 EITPFLDLIEEADGIALGTPTINGDAVRTIWEMLAALVDIETRGKLGAAFGSYGWSGEAV 374
Query: 366 KKIETLISRSKFELVEV-VETKGRPTEEDKEKLREAVRRL 404
+ +ET + K L E + K P+ + ++ R RRL
Sbjct: 375 RLVETRLQGLKMRLPEPGLRVKLHPSAAELKEGRAFGRRL 414
>pir||C69127 flavoprotein A homolog (II) - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621267|gb|AAB84726.1| (AE000809)
flavoprotein A homolog (II) [Methanobacterium
thermoautotrophicum]
Length = 410
Score = 134 bits (333), Expect = 2e-30
Identities = 98/381 (25%), Positives = 177/381 (45%), Gaps = 25/381 (6%)
Query: 32 WDIPE-------GITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLVD----PKEITH 80
WDI G TYN YL+ + V L D + + ++ + ++I
Sbjct: 24 WDIRSYHGYTLGGTTYNTYLIFGDERVALVDNTYPGTSSQMFGRITDAFEREGRDEKIDL 83
Query: 81 IVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVKNFHVVRDGEEVKI 140
I+ +H E DH+G++ ++L+ Y ++II T A L+ Y V+ G+ +
Sbjct: 84 IIQNHIERDHSGSITEVLK--RYGSEIICTAKAAEGLRQHYSIPQDTPMQTVKTGDSTDL 141
Query: 141 GDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGY-GIPRAIDDSDEEVVKEYLPYV 199
G +T F+ P LHWPD+M T + E+ ++FS DA G + I + D E V +
Sbjct: 142 GGKTLTFLEAPMLHWPDSMFTLLEEEGILFSNDAFGQHLCISKRFDKDVPEAV--LMDAA 199
Query: 200 TKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYERVGAGI 259
K+ ++ +++ ++K LG++E + MI P HG IW P++I Y G
Sbjct: 200 MKFYANLLTPLSPLVLRKFSEVKELGLLEKIGMIAPSHGQIW-TEPLKIIAAYTDWATG- 257
Query: 260 PTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVPDSEA 319
+DK ++YD+M+ + E L + ++ + E S+I+ + +S+A
Sbjct: 258 KCRDKATIIYDTMHYSTRMLAHAMAEGLMAADVDVSMHFLHEDER---SEIVKNILESKA 314
Query: 320 LIIGVSTYEADVHPRIRYTLYEI----LDKANYDKPVLIVGAFGWGGVAGKKIETLISRS 375
+ IG T P + +Y + D+ + + ++ G+ GWGG A + ++ +S +
Sbjct: 315 VFIGSPTMFNGPFPSLGDLIYYLKGLTFDRTGFKRLAVVFGSKGWGGGAVRTLQEELSGA 374
Query: 376 KFELVEVVETKGRPTEEDKEK 396
FE+ E E PT D ++
Sbjct: 375 GFEVAETFEVNYVPTSGDLDE 395
>pir||S66533 flavoprotein A - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|710356|gb|AAB53659.1| (U21086) flavoprotein
[Methanobacterium thermoautotrophicum]
Length = 404
Score = 131 bits (325), Expect = 2e-29
Identities = 105/391 (26%), Positives = 178/391 (44%), Gaps = 30/391 (7%)
Query: 32 WDIP-------EGITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLVDP-------KE 77
WDI +G TYNAYL+ + V L D Y F E ++ + D
Sbjct: 20 WDIRNYHGYTLQGTTYNAYLVFGDEGVALID---NSYPGTFQELMARMEDAFNREGREMR 76
Query: 78 ITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVKNFHVVRDGEE 137
+ IV +H E DH+G L +L +A+I T A L Y + F V+ G+
Sbjct: 77 VDFIVQNHVERDHSGVLVEL-HRRFPEAEIHCTEVAVEGLLKHYPALEGTEFRTVKTGDS 135
Query: 138 VKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGY-GIPRAIDDSDEEVVKEYL 196
+ +G RT F+ P LHWPD+M T+ ++ ++FS DA G + P+ +D E + +
Sbjct: 136 IDLGGRTLTFLEAPLLHWPDSMFTF-LDTGILFSNDAFGQHLCYPQRLDTEIPEYI--LM 192
Query: 197 PYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYERVG 256
K+ +I K +++ ++K LG+++ + MI P HG IW P++I E Y
Sbjct: 193 DAAKKFYANLITPLSKLVLRKFDEVKELGLLDKIGMIAPSHGQIW-TEPMKIIEAYAAWA 251
Query: 257 AGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVPD 316
G K KV V+YD+M+ + E +Y + + S+I+ ++ D
Sbjct: 252 TG-KVKKKVTVIYDTMHHSTAMMAHAIAEGAMSEGADVRVYYLHEDDR---SEIVKDILD 307
Query: 317 SEALIIGVSTYEADVHPRIRYTLYEILD---KANYDKPVLIVGAFGWGGVAGKKIETLIS 373
S A+ +G + +P + L + + ++ G+ G G A ++ L++
Sbjct: 308 SHAIALGAPAIYDEPYPSVGDLLMYLRGLKFNRTGQRRAMVFGSMGGRGGATGTMQKLLA 367
Query: 374 RSKFELVEVVETKGRPTEEDKEKLREAVRRL 404
+ F+++E E P E+ + EA RRL
Sbjct: 368 DAGFDVMEADEIYYVPNNEELDACFEAGRRL 398
>gb|AAB85827.1| (AE000898) flavoprotein AI [Methanobacterium thermoautotrophicum]
Length = 409
Score = 131 bits (325), Expect = 2e-29
Identities = 105/391 (26%), Positives = 178/391 (44%), Gaps = 30/391 (7%)
Query: 32 WDIP-------EGITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLVDP-------KE 77
WDI +G TYNAYL+ + V L D Y F E ++ + D
Sbjct: 25 WDIRNYHGYTLQGTTYNAYLVFGDEGVALID---NSYPGTFQELMARMEDAFNREGREMR 81
Query: 78 ITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVKNFHVVRDGEE 137
+ IV +H E DH+G L +L +A+I T A L Y + F V+ G+
Sbjct: 82 VDFIVQNHVERDHSGVLVEL-HRRFPEAEIHCTEVAVEGLLKHYPALEGTEFRTVKTGDS 140
Query: 138 VKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGY-GIPRAIDDSDEEVVKEYL 196
+ +G RT F+ P LHWPD+M T+ ++ ++FS DA G + P+ +D E + +
Sbjct: 141 IDLGGRTLTFLEAPLLHWPDSMFTF-LDTGILFSNDAFGQHLCYPQRLDTEIPEYI--LM 197
Query: 197 PYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYERVG 256
K+ +I K +++ ++K LG+++ + MI P HG IW P++I E Y
Sbjct: 198 DAAKKFYANLITPLSKLVLRKFDEVKELGLLDKIGMIAPSHGQIW-TEPMKIIEAYTAWA 256
Query: 257 AGIPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVPD 316
G K KV V+YD+M+ + E +Y + + S+I+ ++ D
Sbjct: 257 TG-KVKKKVTVIYDTMHHSTAMMAHAIAEGAMSEGADVRVYYLHEDDR---SEIVKDILD 312
Query: 317 SEALIIGVSTYEADVHPRIRYTLYEILD---KANYDKPVLIVGAFGWGGVAGKKIETLIS 373
S A+ +G + +P + L + + ++ G+ G G A ++ L++
Sbjct: 313 SHAIALGAPAIYDEPYPSVGDLLMYLRGLKFNRTGQRRAMVFGSMGGRGGATGTMQKLLA 372
Query: 374 RSKFELVEVVETKGRPTEEDKEKLREAVRRL 404
+ F+++E E P E+ + EA RRL
Sbjct: 373 DAGFDVMEADEIYYVPNNEELDACFEAGRRL 403
>pir||S75748 flavoprotein, 63.5K - Synechocystis sp. (strain PCC 6803)
>gi|1001242|dbj|BAA10483.1| (D64003) flavoprotein
[Synechocystis sp.]
Length = 573
Score = 122 bits (303), Expect = 8e-27
Identities = 95/382 (24%), Positives = 183/382 (47%), Gaps = 33/382 (8%)
Query: 20 VDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLVDPKEIT 79
+D DR R F+ + + G TYN+YL++ D V L D+ + + + +++ L L+DP+ I
Sbjct: 29 LDWDRDR-FDIEFGLQNGTTYNSYLIQA-DKVALVDSSHEKFRQLYLDLLQGLIDPQRID 86
Query: 80 HIVVHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVKNFHVVRDGEEVK 139
+++V HTEPDH+G + +L+LN + ++ T A L F + V+ G+ +
Sbjct: 87 YLIVSHTEPDHSGLVKDILQLNP-RITVVATKVALQFLDNFVHQPFER--IQVKSGDRLD 143
Query: 140 IGD-RTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGIPRAIDDSDEEVVKEYLPY 198
+G F++ P LHWPDTM+TY +++F+CD G + A+ D D + + P
Sbjct: 144 LGQGHDLEFVSAPNLHWPDTMLTYDPATEILFTCDVFGMHYCSDAVFDID---LGKIAPD 200
Query: 199 VTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYERVGAG 258
Y ++G + ++ +K++ +LG I +V GHG + R N + Y
Sbjct: 201 YQFYYDCLMGPNARSVLAAMKRMDNLGTISTV---ANGHGPLLRHNVGELLHRYRHWSES 257
Query: 259 IPTKDK-VLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVPDS 317
+K V+V Y + YG+ + + + + + K + + + + +++G +
Sbjct: 258 QSKAEKTVVVFYVADYGYGDRLSQAIAKGITKTGVGVDMVDLSSADPQEIQELVGH---A 314
Query: 318 EALIIGVSTYE--ADVHPRIRYTLYEILDKANYDKPVLIVGAFGWGGVAGKKIETLISRS 375
+++G+ + AD+ L + +P + G + G + I+ L R+
Sbjct: 315 SGVVLGMPPLQANADLSTNFGAVLAAM-------QPKQVFGLYESYGGDDEPIDPL--RT 365
Query: 376 KF------ELVEVVETKGRPTE 391
KF E +V++ K P+E
Sbjct: 366 KFLDLGLREAFKVIKVKDTPSE 387
>pir||S39896 flavoprotein homolog orf14 - Rhodobacter capsulatus
>gi|435528|emb|CAA51402.1| (X72888) orf14; gtg start
codon [Rhodobacter capsulatus] >gi|742358|prf||2009377E
rnfA downstream ORF [Rhodobacter capsulatus]
Length = 370
Score = 115 bits (286), Expect = 8e-25
Identities = 91/360 (25%), Positives = 162/360 (44%), Gaps = 19/360 (5%)
Query: 53 LFDAWKKDYTEEFIEALSSLVDPKEITHIVVHHTEPDHTGALPKLLELNEYKAQIIGTNF 112
+ D K ++ +F L ++ EI IV++H EPDHTGA+P+LL +AQ+ +
Sbjct: 1 MIDTVKAEFAGDFFARLEAVARYDEIRLIVLNHLEPDHTGAVPELLR-RAPQAQVRLSPR 59
Query: 113 AKNLLQGFYGSDVVK-NFHVVRDGEEVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFS 171
+L+ D + + V G+ V +GDR F T P++HWPDT T++ ++++F+
Sbjct: 60 GLPMLRALLKDDFERYDIKGVTTGQSVSLGDRICSFFTTPFVHWPDTQCTWLAAERVLFT 119
Query: 172 CDA-GGGYGIPRAIDDSDEEVVKEYLPYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESV 230
CD G Y R +D +V ++ Y ++ + ++ Q + ++ L
Sbjct: 120 CDLFGSHYCDGRLFND----LVGDFRFSFEYYFDRIMRPFRSFVAQVLDLIEPL----DF 171
Query: 231 RMILPGHGLIWRRNPVRIFEHYER-----VGAGIPTKDKVLVLYDSMYGFVEERMKVVIE 285
+I P HG I R +P H R + A ++ +L+ Y S Y + + + +
Sbjct: 172 GIIAPAHGPILRSHPRDYLTHTRRLISSWLAAETGSEKTLLIFYVSAYRATAQLAQAIHD 231
Query: 286 ELRKYNKKPVIYRFTDKEAPAVSDILGEVPDSEALIIGVSTYEADVHPRIRYTLYEILDK 345
+ V D E ++ L + +++ + +G T D I L ++D
Sbjct: 232 GAAE--SPDVRVSLFDLEGGEITPFLDLIEEADGIALGTPTINGDAVRTIWEMLAALVDI 289
Query: 346 ANYDKPVLIVGAFGWGGVAGKKIETLISRSKFELVEV-VETKGRPTEEDKEKLREAVRRL 404
K G++GW G A + +ET + K L E + K P+ + E+ R RRL
Sbjct: 290 ETRGKLGAAFGSYGWSGEAVRLVETRLQGLKMRLPEPGLRVKLHPSAAELEEGRAFGRRL 349
>pir||S74578 probable flavoprotein, 64K - Synechocystis sp. (strain PCC 6803)
>gi|1651803|dbj|BAA16730.1| (D90900) potential
FMN-protein [Synechocystis sp.]
Length = 578
Score = 109 bits (270), Expect = 6e-23
Identities = 91/401 (22%), Positives = 182/401 (44%), Gaps = 35/401 (8%)
Query: 20 VDDDRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLVDPKEIT 79
+D DR R F+ +++ G TYN++L++ + L D + + +++ L LVD + +
Sbjct: 34 LDWDRDR-FDIEFELRHGTTYNSFLIR-GEKTALIDTSHRKFEAVYLQLLQDLVDLRSLD 91
Query: 80 HIVVHHTEPDHTGALPKLLELNEYKAQI---IGTNFAKNLLQGFYGSDVVKNFHVVRDGE 136
+++V+HTEPDH+G +P LLEL + + F + L+ + S +VK+ H + G+
Sbjct: 92 YLIVNHTEPDHSGLIPDLLELAPQVTVVGSKVAIQFLEKLVHRPFESQIVKSGHSLDLGQ 151
Query: 137 EVKIGDRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGIPRAIDDSDEEVVKEYL 196
+FI+ P LHWPDT++TY +++++CD +G+ D +E +
Sbjct: 152 -----GHELQFISAPNLHWPDTILTYDSGTQVLYTCDV---FGMHYCDDSLFDETPERLE 203
Query: 197 PYVTKYIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYERVG 256
P Y ++G + ++ +K++ L ++ ++ GHG + + + Y+
Sbjct: 204 PDFQYYYNCLMGSNARSVLMALKRIAPLQVV----LVATGHGPLLQHHISHWLGQYDAWS 259
Query: 257 AG-IPTKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVP 315
+ + V + Y YG + ++ + + + +K V D ++
Sbjct: 260 QNQVKAETFVALFYVDGYGVSDRLVQTIADGI---SKTGVAIELVDLSVADTHEVRTLAQ 316
Query: 316 DSEALIIGV---STYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGWGGVAGKKIETLI 372
+ L++G+ S+ + P + L + P ++G F GG + I L
Sbjct: 317 CAAGLVVGMPPQSSTSTTLDPLLGTILAAV-------HPKQVIGLFESGGGQDEPIYPLR 369
Query: 373 SRSK----FELVEVVETKGRPTEEDKEKLREAVRRLIQWIS 409
+R + E E + K PT + REA L Q+++
Sbjct: 370 NRFQELGLQEAFEPILLKTEPTAATDQLCREAGTDLGQYLT 410
>dbj|BAA05933.1| (D28595) unknown [Escherichia coli]
Length = 268
Score = 79.6 bits (193), Expect = 6e-14
Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 6/249 (2%)
Query: 160 ITYVIEDKLIFSCDAGGGYGIPRAIDDSDEEVVKEYLPYVTKYIVTVIGHYHKYIVQNIK 219
+TY+ D ++FS DA G + + + DE E +Y ++ + + + I
Sbjct: 1 MTYLTGDAVLFSNDAFGQHYCDEHLFN-DEVDQTELFEQCQRYYANILTPFSRLVTPKIT 59
Query: 220 KLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYERVGAGIPTKDKVLVLYDSMYGFVEER 279
++ LG V MI HG++WR NP +I E Y + A +D++ + YD+M
Sbjct: 60 EI--LGFNLPVDMIATSHGVVWRDNPTQIVELYLKWAADYQ-EDRITIFYDTMSNNTRMM 116
Query: 280 MKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVPDSEALIIGVSTYEADVHPRIRYTL 339
+ + + + + + + F + ++IL V S+ +++G ST + P+I +
Sbjct: 117 ADAIAQGIAETDPRVAVKIFNVARSDK-NEILTNVFRSKGVLVGTSTMNNVMMPKIAGLV 175
Query: 340 YEILDKANYDKPVLIVGAFGWGGVAGKKIETLISRSKFELVEVVETKGRPTEEDKEKLRE 399
E+ +K G+ GW G A ++ T + + FE+ ++ K RP ++ + RE
Sbjct: 176 EEMTGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALKLCRE 235
Query: 400 AVRRLI-QW 407
R + QW
Sbjct: 236 HGREIARQW 244
>pir||S76209 probable flavoprotein, 65K - Synechocystis sp. (strain PCC 6803)
>gi|1653555|dbj|BAA18468.1| (D90914) hypothetical
protein [Synechocystis sp.]
Length = 597
Score = 74.5 bits (180), Expect = 2e-12
Identities = 77/381 (20%), Positives = 149/381 (38%), Gaps = 15/381 (3%)
Query: 23 DRIRYFEATWDIPEGITYNAYLMKLKDVVILFDAWKKDYTEEFIEALSSLVDPKEITHIV 82
DR++ FE + + G T N+YL+ D + LFD + +T+ F+ L +D + +++
Sbjct: 48 DRLK-FEIEYGLQRGTTANSYLISA-DKIALFDPPGESFTDNFVGTLIQRLDLNSLDYVI 105
Query: 83 VHHTEPDHTGALPKLLELNEYKAQIIGTNFAKNLLQGFYGSDVVKNFHVVRDGEEVKIG- 141
+ H + L LL L I A+NL + ++V V++ + + +G
Sbjct: 106 LGHVNANRAHTLKLLLSLAPQATIICSNPAAQNLEKLLADAEVNNPIQVMKGNDHLDLGR 165
Query: 142 DRTFRFITVPWLHWPDTMITYVIEDKLIFSCDAGGGYGIPRAIDDSDEEVVKEYLPYVTK 201
FI P +P + TY +++F+ G + + D + +E Y
Sbjct: 166 GHELTFIPTPSPRYPGQLCTYDPRTEILFTDKLFGAHVCGDQVFDEGWTIYQEDRRY--- 222
Query: 202 YIVTVIGHYHKYIVQNIKKLKSLGIIESVRMILPGHGLIWRRNPVRIFEHYER-VGAGIP 260
Y ++ + + KL++ + P HG + R + +Y++ +
Sbjct: 223 YFDCLLAPAAAQVSAALNKLEAY----PAQTYAPSHGPLVRYGLRELTRNYQQWLSEQQA 278
Query: 261 TKDKVLVLYDSMYGFVEERMKVVIEELRKYNKKPVIYRFTDKEAPAVSDILGEVPDSEAL 320
V ++Y S YG + + + K A + + +G+ S
Sbjct: 279 QALNVALIYASAYGNTSTLAQAIARGITKAGVAVTAINAETSNAEEIKEAIGK---SAGF 335
Query: 321 IIGVSTYEADVHPRIRYTLYEILDKANYDKPVLIVGAFGWGGVAGKKIETLISRSKFEL- 379
I G T I+ L L A+ + + G+FGW G A +E + F
Sbjct: 336 IFGSPTLGGHAPTPIQTALGITLANASKTQLCGVFGSFGWSGEAIDMLENKFRDAGFSFG 395
Query: 380 VEVVETKGRPTEEDKEKLREA 400
+ + K +PT++ + EA
Sbjct: 396 FDTIRVKFKPTDQTLKMCEEA 416
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.142 0.423
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163278207
Number of Sequences: 2977
Number of extensions: 7260401
Number of successful extensions: 18806
Number of sequences better than 1.0e-10: 23
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 18733
Number of HSP's gapped (non-prelim): 23
length of query: 409
length of database: 189,106,746
effective HSP length: 53
effective length of query: 356
effective length of database: 157,386,935
effective search space: 56029748860
effective search space used: 56029748860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)