BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0597 (PAB0597) DE:Hypothetical protein
(187 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75136 hypothetical protein PAB0597 - Pyrococcus abyssi (st... 388 e-107
pir||H72414 hypothetical protein TM0120 - Thermotoga maritima (s... 236 2e-61
gb|AAF50104.1| (AE003546) CG6279 gene product [Drosophila melano... 106 2e-22
pir||T35605 probable oxidoreductase - Streptomyces coelicolor >g... 87 1e-16
emb|CAA19772.1| (AL031010) dJ422F24.1 (PUTATIVE novel protein si... 85 5e-16
gb|AAK42689.1| Nitroreductase, bluB homolog, putative [Sulfolobu... 79 4e-14
pir||G72383 hypothetical protein TM0383 - Thermotoga maritima (s... 78 7e-14
sp|P34273|YKH5_CAEEL HYPOTHETICAL 41.1 KD PROTEIN C02C2.5 IN CHR... 75 5e-13
sp|O26223|Y120_METTH PUTATIVE NADH DEHYDROGENASE/NAD(P)H NITRORE... 71 1e-11
pir||B72384 bacterioferritin comigratory protein/NADH dehydrogen... 71 1e-11
>pir||C75136 hypothetical protein PAB0597 - Pyrococcus abyssi (strain Orsay)
>gi|5458315|emb|CAB49804.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 187
Score = 388 bits (985), Expect = e-107
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MKVLELAKRRKTVRKFLPNKPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKIR 60
MKVLELAKRRKTVRKFLPNKPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKIR
Sbjct: 1 MKVLELAKRRKTVRKFLPNKPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKIR 60
Query: 61 ELCEKEEERFYSTTRGKLMEWLKEKGFTPRKPFLSEAPYLILVFSNTKAPYWLQSTWIAV 120
ELCEKEEERFYSTTRGKLMEWLKEKGFTPRKPFLSEAPYLILVFSNTKAPYWLQSTWIAV
Sbjct: 61 ELCEKEEERFYSTTRGKLMEWLKEKGFTPRKPFLSEAPYLILVFSNTKAPYWLQSTWIAV 120
Query: 121 GYLLLALEELGLGSVTYTPPNPRPIEYLLNVPRDYKLQVILPTGYPDDPKPKYERKSLEE 180
GYLLLALEELGLGSVTYTPPNPRPIEYLLNVPRDYKLQVILPTGYPDDPKPKYERKSLEE
Sbjct: 121 GYLLLALEELGLGSVTYTPPNPRPIEYLLNVPRDYKLQVILPTGYPDDPKPKYERKSLEE 180
Query: 181 VVSFNGF 187
VVSFNGF
Sbjct: 181 VVSFNGF 187
>pir||H72414 hypothetical protein TM0120 - Thermotoga maritima (strain MSB8)
>gi|4980612|gb|AAD35214.1|AE001698_3 (AE001698)
oxidoreductase, putative [Thermotoga maritima]
Length = 184
Score = 236 bits (595), Expect = 2e-61
Identities = 109/183 (59%), Positives = 136/183 (73%), Gaps = 2/183 (1%)
Query: 5 ELAKRRKTVRKFLPNKPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKIRELCE 64
+LAK+RKTVRKF KP E ++ ++ A EAPSGMNAQPW+F++++D E KR+IRE CE
Sbjct: 4 DLAKQRKTVRKFKEEKPSIEKLMYCLKVANEAPSGMNAQPWRFLVVKDEETKRQIRETCE 63
Query: 65 KEEERFYSTTRGKLMEWLKEKGFTPRKPFLSEAPYLILVFSNTKAPYWLQSTWIAVGYLL 124
K E+ FY RGKL EWL E F +KPFL EAPYL+LVFS APY +S W+A+GYLL
Sbjct: 64 KAEKDFYENVRGKLKEWLNENSFNWKKPFLEEAPYLLLVFSKKDAPYSRESVWLAIGYLL 123
Query: 125 LALEELGLGSVTYTPPNPRPIEYLLNVPRDYKLQVILPTGYPDDPKPKYERKSLEEVVSF 184
LALEE GLG+V YTPPNP + ++N P D + +VILP GYPDDPKPKY R+ ++ VSF
Sbjct: 124 LALEEQGLGTVPYTPPNPNELTKIVNTPSDLRFEVILPVGYPDDPKPKYPREEMK--VSF 181
Query: 185 NGF 187
N F
Sbjct: 182 NHF 184
>gb|AAF50104.1| (AE003546) CG6279 gene product [Drosophila melanogaster]
Length = 748
Score = 106 bits (262), Expect = 2e-22
Identities = 74/199 (37%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 2 KVLELAKRRKTVRKFLPN-KPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKIR 60
++ EL + R+++R F + KP +I I AA APSG + +PW + ++++ ELKR IR
Sbjct: 549 RLYELMRGRRSIRSFNSHPKPDLSVIEDCIRAAGTAPSGAHTEPWTYCVVQEPELKRSIR 608
Query: 61 ELCEKEEERFYSTTRGKLMEW---LKEKGFTPRKPFLSEAPYLILVFSNT---------- 107
E+ E+EE YS +W L+ K +L+EAPYLIL+F T
Sbjct: 609 EIVEQEELVNYSQRMHP--QWVTDLRPLQTNHVKEYLTEAPYLILIFKQTYGLSENGKRM 666
Query: 108 KAPYWLQ-STWIAVGYLLLALEELGLGSVTYTPPNPRP-IEYLLNVPRDYKLQVILPTGY 165
+ Y+ + ST IA G LL AL+ GL S+ TP N P + LL P + KL ++LP GY
Sbjct: 667 RRHYYNEISTSIAAGILLCALQAAGLASLVTTPLNCGPALRNLLGRPVNEKLLILLPVGY 726
Query: 166 PDD--PKPKYERKSLEEVV 182
P D P RK+L ++
Sbjct: 727 PKDGCTVPDLARKNLSNIM 745
>pir||T35605 probable oxidoreductase - Streptomyces coelicolor
>gi|5139582|emb|CAB45600.1| (AL079356) putative
oxidoreductase [Streptomyces coelicolor]
Length = 226
Score = 87.4 bits (213), Expect = 1e-16
Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 22/193 (11%)
Query: 9 RRKTVRKFLPNKPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKIRELCEKEEE 68
RR++VR F PRE + A+ AA APSG + QPWKF +I D K +IR E+EE
Sbjct: 34 RRRSVRFFSDEPVPRECLDLAVAAANTAPSGAHFQPWKFAVIGDAATKHRIRVAAEEEER 93
Query: 69 RFYSTTRGKLMEW---LKEKGFTPRKPFLSEAPYLILVFS--NTKAP--------YWLQS 115
Y R EW L K FL P++++ F+ +T P Y +S
Sbjct: 94 VNYEGGRIP-PEWRAALARLETDSDKGFLDVVPWIVVCFAEKSTALPDGSLRKNYYVNES 152
Query: 116 TWIAVGYLLLALEELGLGSVTYTPPNPRPIEYLLNV---PRDYKLQVILPTGY--PDDPK 170
IA G + AL +GL ++T+T P P+ +L + P + + ++ P GY PD
Sbjct: 153 VGIACGLFITALHAMGLSTLTHT---PNPMAFLTRICARPGNERPYILFPVGYAAPDCEV 209
Query: 171 PKYERKSLEEVVS 183
P RK L E ++
Sbjct: 210 PDLARKPLAEAIT 222
>emb|CAA19772.1| (AL031010) dJ422F24.1 (PUTATIVE novel protein similar to C. elegans
C02C2.5) [Homo sapiens]
Length = 184
Score = 85.0 bits (207), Expect = 5e-16
Identities = 59/160 (36%), Positives = 85/160 (52%), Gaps = 12/160 (7%)
Query: 5 ELAKRRKTVRKFLPNKPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKIRELCE 64
EL +R++VR + P E+I I A APSG + +PW F++++D ++K KIR++ E
Sbjct: 22 ELLNKRRSVRFISNEQVPMEVIDNVIRTAGTAPSGAHTEPWTFVVVKDPDVKHKIRKIIE 81
Query: 65 KEEERFYSTTRG-KLMEWLKEKGFTPRKPFLSEAPYLILVFSNT---------KAPYWLQ 114
+EEE Y G + + LK+ K +L AP LIL+F K Y+ +
Sbjct: 82 EEEEINYMKRMGHRWVTDLKKLRTNWIKEYLDTAPILILIFKQVHGFAANGKKKVHYYNE 141
Query: 115 -STWIAVGYLLLALEELGLGSVTYTPPNPRP-IEYLLNVP 152
S IA G LL AL+ GL +VT TP N P + LL P
Sbjct: 142 ISVSIACGILLAALQNAGLVTVTTTPLNCGPRLRVLLGRP 181
>gb|AAK42689.1| Nitroreductase, bluB homolog, putative [Sulfolobus solfataricus]
Length = 227
Score = 78.8 bits (191), Expect = 4e-14
Identities = 61/189 (32%), Positives = 102/189 (53%), Gaps = 15/189 (7%)
Query: 1 MKVLELAKRRKTVRKFL-PNKPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKI 59
M V E ++R+ +R + P+ P E++ K + AA APS +QPW FIII D E+++KI
Sbjct: 1 MDVYEAIRKRRDIRSYYKPDPIPDEVLAKILSAAHMAPSVGYSQPWNFIIIRDDEIRKKI 60
Query: 60 RELCEKEEERFYST---TRGKLMEWLKEKGF--TPRKPFLSEAPYLI---LVFSNTKAPY 111
+++ E+E +RF S R + +K + TP ++ P ++ +T
Sbjct: 61 KQVVEEERKRFESVLDEERKLIFSKIKVEAILDTPVNMAVTYDPNRFGPNILGRSTMPET 120
Query: 112 WLQSTWIAVGYLLLA--LEELGLGSVTYTPPNPRPIEYLLNVPRDYKLQVILPTGYPDD- 168
L ST +A+G L LA E +G+G V++ N ++ +LN+P++ +L L GY +
Sbjct: 121 SLYSTVLAIGNLWLAATAEGIGVGFVSFF--NKEKVKEILNIPKEIELVSYLTLGYVREF 178
Query: 169 PK-PKYERK 176
PK P+ E K
Sbjct: 179 PKIPELEEK 187
>pir||G72383 hypothetical protein TM0383 - Thermotoga maritima (strain MSB8)
>gi|4980886|gb|AAD35468.1|AE001718_5 (AE001718) NADH
oxidoreductase, putative [Thermotoga maritima]
Length = 166
Score = 78.0 bits (189), Expect = 7e-14
Identities = 56/187 (29%), Positives = 82/187 (42%), Gaps = 35/187 (18%)
Query: 4 LELAKRRKTVRKFLPNKPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKIRELC 63
+ + RR+++RK+ P EL+ + I AA APS N QPW F++I + E K+KI E+
Sbjct: 1 MSIIYRRRSIRKYQKKDVPDELVKEIIRAAMHAPSACNQQPWHFVVIRNEETKKKIAEI- 59
Query: 64 EKEEERFYSTTRGKLMEWLKEKGFTPRKPFLSEAPYLILVFSNTKAP----YWLQSTWIA 119
P +EAP +ILV + YW+Q A
Sbjct: 60 ------------------------HPHAQMSAEAPVVILVCGDPTLEKCKGYWIQDCSAA 95
Query: 120 VGYLLLALEELGLGSVTYTPPNPR-----PIEYLLNVPRDYKLQVILPTGYPDDPKPKYE 174
V LLL ELGLG+V + PR LL +P ++P GYP + + +
Sbjct: 96 VENLLLRATELGLGAV-WCGVYPREERVKAFRELLGIPEHVVPFALVPVGYPAEHPVQVD 154
Query: 175 RKSLEEV 181
R E +
Sbjct: 155 RFKPERI 161
>sp|P34273|YKH5_CAEEL HYPOTHETICAL 41.1 KD PROTEIN C02C2.5 IN CHROMOSOME III
>gi|630501|pir||S44738 C02C2.5 protein - Caenorhabditis
elegans >gi|388568|gb|AAA27908.1| (L23649) putative
[Caenorhabditis elegans]
Length = 359
Score = 75.3 bits (182), Expect = 5e-13
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 15/164 (9%)
Query: 5 ELAKRRKTVRKFLPNKPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKIRELCE 64
E K R++ R+F P ++I ++ A +PS N QPW F ++ +K IR++ E
Sbjct: 149 EEMKMRRSCRQFSSRDVPLKVIQNLLKTAGTSPSVGNLQPWTFCVVSSDSIKTMIRKILE 208
Query: 65 KEEERFYSTTRGKLMEW---LKEKGFTPRKPFLSEAPYLIL--------VFSNTKAPYWL 113
+E Y +R K W + + T R+P++++APYL++ V S T+ +
Sbjct: 209 ADERDNY-VSRKKGASWVVDVSQLQDTWRRPYITDAPYLLIVCHEIFRDVHSKTERVFHY 267
Query: 114 Q--STWIAVGYLLLALEELGLGSVTYTPPNPRP-IEYLLNVPRD 154
ST IAVG LL A++ +GL +V +P N P I +L P +
Sbjct: 268 NQISTSIAVGILLAAIQNVGLSTVVTSPLNAGPDISRILRRPEN 311
>sp|O26223|Y120_METTH PUTATIVE NADH DEHYDROGENASE/NAD(P)H NITROREDUCTASE
>gi|7430216|pir||B69027 NADPH-oxidoreductase -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621159|gb|AAB84626.1| (AE000801)
NADPH-oxidoreductase [Methanobacterium
thermoautotrophicum]
Length = 191
Score = 70.6 bits (170), Expect = 1e-11
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 35/175 (20%)
Query: 1 MKVLELAKRRKTVRKFLPNKPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKIR 60
M VLE K R+++RK+ + P ELI K ++AA PS ++ +PW FI++ + E+ KI
Sbjct: 23 MDVLEAIKTRRSIRKYQDREVPEELIDKILDAAMCGPSAVDERPWHFIVVRNREMLEKIP 82
Query: 61 ELCEKEEERFYSTTRGKLMEWLKEKGFTPRKPFLSEAPYLILVFSNT---KAP-YWLQST 116
E+ P + +AP I+V ++ K P +W+Q
Sbjct: 83 EV-------------------------HPYGAMVKDAPVAIIVCCDSSLEKIPGFWVQDC 117
Query: 117 WIAVGYLLLALEELGLGSVTYTPPNP-----RPIEYLLNVPRDYKLQVILPTGYP 166
IA +LLA LGLG+V +T P I L ++P ++P GYP
Sbjct: 118 SIASQNILLAAHSLGLGAV-WTGVYPLEDRVEGIRRLFSIPEHVIPFSVIPLGYP 171
>pir||B72384 bacterioferritin comigratory protein/NADH dehydrogenase -
Thermotoga maritima (strain MSB8)
>gi|4980889|gb|AAD35471.1|AE001718_8 (AE001718)
bacterioferritin comigratory protein/NADH dehydrogenase
[Thermotoga maritima]
Length = 321
Score = 70.6 bits (170), Expect = 1e-11
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 46/203 (22%)
Query: 2 KVLELAKRRKTVRKFLPNKPPRELILKAIEAAKEAPSGMNAQPWKFIIIEDHELKRKIRE 61
K +E + R+ ++K ++ PRE + I+AA APS MN QPW+F+++++ EL +KI E
Sbjct: 145 KHIEWRRARRALKK---DRVPREELELLIKAAHLAPSCMNNQPWRFVVVDEEELLKKIHE 201
Query: 62 LCEKEEERFYSTTRGKLMEWLKEKGFTPRKPFLSEAPYLILVFSN--------TKAPYWL 113
W+K AP LI V S Y+L
Sbjct: 202 ALPGGN------------YWMK------------NAPALIAVHSKKDFDCALPDNRDYFL 237
Query: 114 QSTWIAVGYLLLALEELGLGSVTYTPPNPRPIEYLLNVPRDYKLQVILPTGYPDDPKPKY 173
T +AVG LL+ ++GL + +P ++ +L +P D+ L ++ GY D
Sbjct: 238 FDTGLAVGNLLVQATQMGLVAHPVAGYDPVKVKEILKIPEDHVLITLIAVGYLGDESELS 297
Query: 174 E-----------RKSLEEVVSFN 185
E RK L E+V +N
Sbjct: 298 EKHRELERSERVRKELSEIVRWN 320
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80381917
Number of Sequences: 2977
Number of extensions: 3576820
Number of successful extensions: 9150
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9137
Number of HSP's gapped (non-prelim): 10
length of query: 187
length of database: 189,106,746
effective HSP length: 52
effective length of query: 135
effective length of database: 157,985,422
effective search space: 21328031970
effective search space used: 21328031970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)