BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0598 (rr) DE:RUBRERYTHRIN
(175 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75136 rubrerythrin PAB0598 - Pyrococcus abyssi (strain Ors... 359 1e-98
pir||T44569 rubrerythrin [imported] - Pyrococcus furiosus >gi|60... 321 3e-87
gi|11499230 rubrerythrin (rr3) [Archaeoglobus fulgidus] >gi|7450... 246 1e-64
pir||F72348 rubrerythrin - Thermotoga maritima (strain MSB8) >gi... 225 3e-58
pir||H69209 rubrerythrin - Methanobacterium thermoautotrophicum ... 162 3e-39
gi|11499893 rubrerythrin (rr4) [Archaeoglobus fulgidus] >gi|7450... 162 3e-39
sp|P30820|NIGY_DESVH NIGERYTHRIN >gi|1616801|gb|AAC45480.1| (U71... 109 2e-23
pir||G81416 non-heme iron protein Cj0012c [imported] - Campyloba... 100 1e-20
sp|Q58144|RUBY_METJA PUTATIVE RUBRERYTHRIN >gi|2129277|pir||F643... 99 4e-20
pir||A69201 rubrerythrin - Methanobacterium thermoautotrophicum ... 97 1e-19
gi|11498437 rubrerythrin (rr2) [Archaeoglobus fulgidus] >gi|7447... 95 4e-19
gb|AAF08979.1| (AF202316) rubrerythrin [Moorella thermoacetica] 88 7e-17
gb|AAK42763.1| Rubrerythrin (rr) [Sulfolobus solfataricus] 85 4e-16
gi|11498438 rubrerythrin (rr1) [Archaeoglobus fulgidus] >gi|7447... 82 3e-15
pdb|1RYT| Rubrerythrin 79 4e-14
sp|P24931|RUBY_DESVH RUBRERYTHRIN >gi|79430|pir||A39492 rubreryt... 79 4e-14
sp|P51591|RUBY_CLOPE RUBRERYTHRIN >gi|1200049|emb|CAA63429.1| (X... 73 2e-12
gb|AAC28312.1| (AF050172) rubrerythrin/nigerythrin-like protein ... 71 8e-12
>pir||D75136 rubrerythrin PAB0598 - Pyrococcus abyssi (strain Orsay)
>gi|5458316|emb|CAB49805.1| (AJ248285) RUBRERYTHRIN
[Pyrococcus abyssi]
Length = 175
Score = 359 bits (911), Expect = 1e-98
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MVFLMPVKRAITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHA 60
MVFLMPVKRAITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHA
Sbjct: 1 MVFLMPVKRAITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHA 60
Query: 61 KNHFIALGKLGKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALEAEKI 120
KNHFIALGKLGKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALEAEKI
Sbjct: 61 KNHFIALGKLGKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALEAEKI 120
Query: 121 HAELYKKAKESAEQGKDIEIKKVYICPVCGYTAIDEAPERCPVCGAPRDKFIVFE 175
HAELYKKAKESAEQGKDIEIKKVYICPVCGYTAIDEAPERCPVCGAPRDKFIVFE
Sbjct: 121 HAELYKKAKESAEQGKDIEIKKVYICPVCGYTAIDEAPERCPVCGAPRDKFIVFE 175
>pir||T44569 rubrerythrin [imported] - Pyrococcus furiosus
>gi|6066242|gb|AAF03227.1|AF156097_7 (AF156097)
rubrerythrin [Pyrococcus furiosus]
Length = 171
Score = 321 bits (814), Expect = 3e-87
Identities = 150/171 (87%), Positives = 165/171 (95%)
Query: 5 MPVKRAITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHF 64
M VKR +T+KFLEEAFAGESMAHM+YLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHF
Sbjct: 1 MVVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHF 60
Query: 65 IALGKLGKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALEAEKIHAEL 124
IALGKLGKTPENLQ GIEGET+EVEEMYPV+NK AEFQGEK+AVRTTH+ALEAEKIHAEL
Sbjct: 61 IALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAEL 120
Query: 125 YKKAKESAEQGKDIEIKKVYICPVCGYTAIDEAPERCPVCGAPRDKFIVFE 175
Y+KAKE AE+G+DIEIKKVYICP+CGYTA+DEAPE CPVCGAP++KF+VFE
Sbjct: 121 YRKAKEKAEKGEDIEIKKVYICPICGYTAVDEAPEYCPVCGAPKEKFVVFE 171
>gi|11499230 rubrerythrin (rr3) [Archaeoglobus fulgidus] >gi|7450397|pir||G69454
rubrerythrin (rr3) homolog - Archaeoglobus fulgidus
>gi|2648916|gb|AAB89608.1| (AE000989) rubrerythrin (rr3)
[Archaeoglobus fulgidus]
Length = 164
Score = 246 bits (622), Expect = 1e-64
Identities = 112/164 (68%), Positives = 139/164 (84%)
Query: 11 ITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKL 70
+TRKFLE+AFAGES AHM+Y+IFA+ AE EG+P IAKLFRAIA+AE VHA+NH+ ALG +
Sbjct: 1 MTRKFLEDAFAGESQAHMRYMIFADVAENEGYPKIAKLFRAIAFAELVHARNHYRALGNV 60
Query: 71 GKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALEAEKIHAELYKKAKE 130
G T +NLQ IEGE+YEVEEMYPVFN A+FQGE +A ++T++AL AEKIH ELY+KAKE
Sbjct: 61 GSTVDNLQKAIEGESYEVEEMYPVFNNAAKFQGESEAEKSTYYALSAEKIHEELYRKAKE 120
Query: 131 SAEQGKDIEIKKVYICPVCGYTAIDEAPERCPVCGAPRDKFIVF 174
A Q KD+E++KV+ICPVCG+TA+DEAPE CPVCG R+ F+ F
Sbjct: 121 LASQEKDMELEKVFICPVCGFTAVDEAPEFCPVCGTKREMFVEF 164
>pir||F72348 rubrerythrin - Thermotoga maritima (strain MSB8)
>gi|4981180|gb|AAD35741.1|AE001739_4 (AE001739)
rubrerythrin [Thermotoga maritima]
Length = 170
Score = 225 bits (567), Expect = 3e-58
Identities = 106/167 (63%), Positives = 133/167 (79%), Gaps = 1/167 (0%)
Query: 9 RAITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALG 68
R +T+KFLE+AFAGESMAHMKYLIFA++AEQ G +A LFRAIAYAE+VHA+NH+ LG
Sbjct: 2 REMTKKFLEDAFAGESMAHMKYLIFADEAEQRGLKKLANLFRAIAYAEYVHARNHYRELG 61
Query: 69 KLGKT-PENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALEAEKIHAELYKK 127
K+ K EN+Q I+GET+E++EMYPV+N A+FQ EK A R+T FA EAEKIHAE+YKK
Sbjct: 62 KIYKEMAENVQQCIDGETFEIDEMYPVYNTVAQFQEEKGAERSTKFAWEAEKIHAEMYKK 121
Query: 128 AKESAEQGKDIEIKKVYICPVCGYTAIDEAPERCPVCGAPRDKFIVF 174
AKE E+G+D +K+YICPVCG+T E PE+CPVCGAP+ + F
Sbjct: 122 AKELVEKGEDYTAEKIYICPVCGHTVEGEPPEKCPVCGAPKSAYREF 168
>pir||H69209 rubrerythrin - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621913|gb|AAB85322.1| (AE000859) rubrerythrin
[Methanobacterium thermoautotrophicum]
Length = 163
Score = 162 bits (405), Expect = 3e-39
Identities = 84/156 (53%), Positives = 107/156 (67%), Gaps = 3/156 (1%)
Query: 16 LEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPE 75
L+EAFAGES A+ KYL FA+KA++EG+ +AKLFRA A AE VHA NH A+ + T E
Sbjct: 7 LKEAFAGESQANRKYLAFAKKADEEGYHQVAKLFRAAAAAETVHAMNHLDAMDAVRSTEE 66
Query: 76 NLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALEAEKIHAELYKKAKESAEQG 135
NL+ IEGET E E+MYP F + AE +G + A + A EKIHAELYKKA E+ G
Sbjct: 67 NLREAIEGETAEFEDMYPGFIEEAEAEGHEQARWSFDVANRVEKIHAELYKKALENL--G 124
Query: 136 KDIEIKKVYICPVCGYTAIDEAPERCPVCGAPRDKF 171
++E+ Y+C CG T EAP RCP+CGAP+D+F
Sbjct: 125 SNVEV-DYYVCNWCGNTVEGEAPSRCPICGAPKDEF 159
>gi|11499893 rubrerythrin (rr4) [Archaeoglobus fulgidus] >gi|7450396|pir||H69538
rubrerythrin (rr4) homolog - Archaeoglobus fulgidus
>gi|2648207|gb|AAB88944.1| (AE000944) rubrerythrin (rr4)
[Archaeoglobus fulgidus]
Length = 171
Score = 162 bits (405), Expect = 3e-39
Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 4/163 (2%)
Query: 12 TRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLG 71
T + L A+AGES A ++Y IFAE A +G IA++F A +++EFVHAKNH L L
Sbjct: 13 TEENLRNAYAGESQAMVRYRIFAEIARSKGLEGIARVFEAASFSEFVHAKNHLKVLEDLN 72
Query: 72 KTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALEAEKIHAELYKKAKES 131
+NL+ GETYE+ EMYP F + AE +G + A+ + +ALE EK+HA ++K+ ES
Sbjct: 73 DVRKNLETAYAGETYEITEMYPRFYEEAEKEGNRRAMNSIKWALETEKVHAGIFKRLIES 132
Query: 132 AEQGKDIEIKKVYICPVCGYTAIDEAPERCPVCGAPRDKFIVF 174
E +D K+Y+CPVCGY EAPE+CP+C P++KF+ F
Sbjct: 133 GEDYRD----KIYVCPVCGYAMEGEAPEKCPLCNTPKEKFVEF 171
>sp|P30820|NIGY_DESVH NIGERYTHRIN >gi|1616801|gb|AAC45480.1| (U71215) nigerythrin
[Desulfovibrio vulgaris]
Length = 202
Score = 109 bits (270), Expect = 2e-23
Identities = 62/177 (35%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 12 TRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLG 71
T + L+ A AGE+ AH KY FA+ A ++G+ IA+LF A A AE +H + + ++
Sbjct: 29 TLENLKAAIAGETGAHAKYTAFAKAAREQGYEQIARLFEATAAAELIHIGLEYALVAEME 88
Query: 72 KTPE--------------NLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALEA 117
E NL +G GE YE +MYP F + A+ +G AV A A
Sbjct: 89 PGYEKPTVAAPSAYSCDLNLISGANGEIYETSDMYPAFIREAQGEGNSKAVHVFTRAKLA 148
Query: 118 EKIHAELYKKAKESAEQGKDIEIKKVYICPVCGYTAIDEAPERCPVCGAPRDKFIVF 174
E +HAE Y A + D K ++CP+CGY E E+CP+C P+D F +
Sbjct: 149 ESVHAERYLAAYNDIDAPDD---DKFHLCPICGYIHKGEDFEKCPICFRPKDTFTAY 202
>pir||G81416 non-heme iron protein Cj0012c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967517|emb|CAB72505.1|
(AL139074) non-haem iron protein [Campylobacter jejuni]
Length = 215
Score = 100 bits (246), Expect = 1e-20
Identities = 65/170 (38%), Positives = 95/170 (55%), Gaps = 9/170 (5%)
Query: 11 ITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKL 70
+T L +AFAGESMA KY +FA+ AE+EG+ +A+ FR A E HA+ F A ++
Sbjct: 40 LTAVNLMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEI 99
Query: 71 --GK----TPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALEAEKIHAEL 124
GK T +NL EGE YE MYP F K AE +G+K R + E H
Sbjct: 100 VDGKPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHERE 159
Query: 125 YKKAKESAEQGK--DIEIKKVYICPVCGYT-AIDEAPERCPVCGAPRDKF 171
Y K+ E+ + + E++++++C VCG+ +AP CP+C AP++ F
Sbjct: 160 YLALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYF 209
>sp|Q58144|RUBY_METJA PUTATIVE RUBRERYTHRIN >gi|2129277|pir||F64391 rubrerythrin -
Methanococcus jannaschii >gi|1591449|gb|AAB98729.1|
(U67520) rubrerythrin (rr) [Methanococcus jannaschii]
Length = 204
Score = 98.7 bits (242), Expect = 4e-20
Identities = 66/187 (35%), Positives = 92/187 (48%), Gaps = 25/187 (13%)
Query: 12 TRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKL- 70
T K L +A+ GES+A +Y +A+ A+QEG+ IA++F A E HAK + + +L
Sbjct: 13 TLKNLTKAYIGESLARNRYTCYAKIAKQEGYEQIAEIFLLTAENEREHAKWLYYLITELK 72
Query: 71 ---------------------GKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVR 109
G T ENL+A IEGE +E EMYP F AE +G K+
Sbjct: 73 KKYNIDDKAIKVDGVEVPIVLGNTAENLKASIEGEHFEHTEMYPKFADIAEKEGLKEIAD 132
Query: 110 TTHFALEAEKIHAELYKKAKESAEQGKDIEIKK--VYICPVCGYTAI-DEAPERCPVCGA 166
AEK H E +KK + E+G + K ++C CG+ + E PE+CP C
Sbjct: 133 RLRAIGIAEKHHEERFKKLLKEVEEGTVFKKDKPVEWVCRKCGFVHLGKEPPEKCPSCSH 192
Query: 167 PRDKFIV 173
PR F V
Sbjct: 193 PRKYFEV 199
>pir||A69201 rubrerythrin - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621845|gb|AAB85259.1| (AE000854) rubrerythrin
[Methanobacterium thermoautotrophicum]
Length = 197
Score = 97.1 bits (238), Expect = 1e-19
Identities = 67/186 (36%), Positives = 87/186 (46%), Gaps = 24/186 (12%)
Query: 12 TRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKL- 70
T + L +AF GES A +Y +A+ A++EGF I+++F A E HAK F + L
Sbjct: 7 TLENLTKAFIGESQARNRYTFYAKIAKKEGFEQISEIFLTTADNEREHAKWLFRLINDLK 66
Query: 71 --------------------GKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRT 110
G T ENL A IEGE YE EMYP F AE +G + +
Sbjct: 67 KEVGEDLSSIVVDAEAPLTLGTTDENLIAAIEGEHYENSEMYPEFADVAEEEGYPEIAKR 126
Query: 111 THFALEAEKIHAELYKKAKESAEQGKDIEIKK--VYICPVCGYT-AIDEAPERCPVCGAP 167
EAEK H E Y+K + E GK + ++C CGY E PE+CP C P
Sbjct: 127 LRAIAEAEKHHEERYRKLLKLVETGKVYRKDEPVTWVCRKCGYVHEGTEPPEKCPSCDHP 186
Query: 168 RDKFIV 173
F V
Sbjct: 187 SRYFQV 192
>gi|11498437 rubrerythrin (rr2) [Archaeoglobus fulgidus] >gi|7447638|pir||G69353
rubrerythrin (rr2) homolog - Archaeoglobus fulgidus
>gi|2649773|gb|AAB90407.1| (AE001047) rubrerythrin (rr2)
[Archaeoglobus fulgidus]
Length = 190
Score = 95.2 bits (233), Expect = 4e-19
Identities = 65/183 (35%), Positives = 89/183 (48%), Gaps = 24/183 (13%)
Query: 12 TRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKL- 70
T + L +AF GESMA +Y +A+ A+ EG+ I ++F A E HA+N + +L
Sbjct: 3 TLENLVKAFIGESMARNRYTFYAKVAKDEGYVFIQRVFLETAENEKEHAENLLKFIQQLR 62
Query: 71 ----------------GKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFA 114
G T ENL+A IEGE YE EMYP F AE +G KD
Sbjct: 63 GDNAAIKVEAEAPLVWGTTVENLKAAIEGEHYENSEMYPQFADEAEKEGFKDIADRLRAI 122
Query: 115 LEAEKIHAELYKKAKESAEQG----KDIEIKKVYICPVCGYTAI-DEAPERCPVCGAPRD 169
+AE+ H Y++ E G +D EI ++C CGY E PE CP CG P+
Sbjct: 123 GKAEEHHERRYRRLLAEVENGTFFKRDKEI--AWVCLECGYIHYGTEPPEECPSCGHPKA 180
Query: 170 KFI 172
++
Sbjct: 181 YYV 183
>gb|AAF08979.1| (AF202316) rubrerythrin [Moorella thermoacetica]
Length = 191
Score = 87.8 bits (214), Expect = 7e-17
Identities = 63/183 (34%), Positives = 83/183 (44%), Gaps = 20/183 (10%)
Query: 7 VKRAITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIA 66
+K T K L +FAGES A +Y +A +A++EG+ IA +F A E HAK F
Sbjct: 4 LKGTRTEKNLLTSFAGESQARNRYTFYASQAKKEGYEQIAAIFLETADNEKEHAKRIFKF 63
Query: 67 L-------------GKLGKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHF 113
L G + TP+NL A GE YE MYP F + A +G +
Sbjct: 64 LEGGEVEIGAAFPAGTIATTPKNLGAAAAGENYEHTTMYPEFARVAAEEGFPEIAAVLRA 123
Query: 114 ALEAEKIHAELYKKAKESAEQGKDI--EIKKVYICPVCGYTAIDE---APERCPVCGAPR 168
AEK H + ++ + E + E K + C CGY I E APE CP C PR
Sbjct: 124 IARAEKGHEDRFRALLANIENDRVFKREEKVTWRCRNCGY--IHEGTTAPEVCPACAHPR 181
Query: 169 DKF 171
F
Sbjct: 182 SFF 184
>gb|AAK42763.1| Rubrerythrin (rr) [Sulfolobus solfataricus]
Length = 144
Score = 85.4 bits (208), Expect = 4e-16
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 7 VKRAITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNH--F 64
+K T + L AF GE+MA+ +YL FA++A++EG+P IA L R+IA E HA H F
Sbjct: 4 LKGTKTAENLRHAFCGEAMANRRYLYFAKRADEEGYPEIAGLLRSIAEGETAHAFGHLDF 63
Query: 65 IALG---------KLGKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFAL 115
I G +G + L++ + GETYE +MYP + K A +G +
Sbjct: 64 IRQGGIGDPATDKPIGTLEQMLESAVAGETYEWTQMYPGYAKVAREEGFNEIAEWFETLA 123
Query: 116 EAEKIHAELYKKAKESAEQGK 136
AEK HAE + + GK
Sbjct: 124 RAEKSHAEKFTGVLNQLKGGK 144
>gi|11498438 rubrerythrin (rr1) [Archaeoglobus fulgidus] >gi|7447639|pir||H69353
rubrerythrin (rr1) homolog - Archaeoglobus fulgidus
>gi|2649783|gb|AAB90419.1| (AE001047) rubrerythrin (rr1)
[Archaeoglobus fulgidus]
Length = 188
Score = 82.3 bits (200), Expect = 3e-15
Identities = 60/181 (33%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 12 TRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKL- 70
T K L + + GES+A +Y I++ AE E F +AK FR + E HA+ + KL
Sbjct: 3 TPKNLLKGYIGESLAISRYQIYSSIAEAEKFIYVAKYFREVIENEKKHAEIFANLIKKLD 62
Query: 71 --------------GKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALE 116
G T ENL+ +EGE +E EE YP + AE +G K+ +
Sbjct: 63 IEPSEVEVKAPIKFGTTAENLRYAVEGEKWEAEEFYPSTAEVAEKEGFKEVAERFRALTK 122
Query: 117 AEKIHAELYKKAKESAEQG----KDIEIKKVYICPVCGYTAI-DEAPERCPVCGAPRDKF 171
E H + K E E +D E++ ++C VCGYT E P+ CP CGA F
Sbjct: 123 VEFSHQRKFAKLLELIENDQMFKRDEEVE--WMCLVCGYTEKGKEPPKVCPNCGAMYYHF 180
Query: 172 I 172
+
Sbjct: 181 V 181
>pdb|1RYT| Rubrerythrin
Length = 190
Score = 78.8 bits (191), Expect = 4e-14
Identities = 57/181 (31%), Positives = 82/181 (44%), Gaps = 16/181 (8%)
Query: 7 VKRAITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIA 66
+K + T K + AFAGES A +Y F +A+++GF I+ +F A E HAK F
Sbjct: 3 LKGSRTEKNILTAFAGESQARNRYNYFGGQAKKDGFVQISDIFAETADQEREHAKRLFKF 62
Query: 67 L-------------GKLGKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHF 113
L G + T NL A GE +E EMYP F + A +G ++ R
Sbjct: 63 LEGGDLEIVAAFPAGIIADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFAS 122
Query: 114 ALEAEKIHAELYKKAKESAEQGKDI--EIKKVYICPVCGYTAIDE-APERCPVCGAPRDK 170
AE+ H + + + ++G+ E + C CGY APE CP C P+
Sbjct: 123 IAVAEEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGAPELCPACAHPKAH 182
Query: 171 F 171
F
Sbjct: 183 F 183
>sp|P24931|RUBY_DESVH RUBRERYTHRIN >gi|79430|pir||A39492 rubrerythrin - Desulfovibrio
vulgaris >gi|11513646|pdb|1DVB|A Chain A, Rubrerythrin
>gi|6980396|pdb|1B71|A Chain A, Rubrerythrin
>gi|238472|gb|AAB20261.1| rubrerythrin [Desulfovibrio
vulgaris, Peptide, 191 aa] >gi|1769571|gb|AAB39991.1|
(U82323) rubrerythrin [Desulfovibrio vulgaris]
Length = 191
Score = 78.8 bits (191), Expect = 4e-14
Identities = 57/181 (31%), Positives = 82/181 (44%), Gaps = 16/181 (8%)
Query: 7 VKRAITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIA 66
+K + T K + AFAGES A +Y F +A+++GF I+ +F A E HAK F
Sbjct: 4 LKGSRTEKNILTAFAGESQARNRYNYFGGQAKKDGFVQISDIFAETADQEREHAKRLFKF 63
Query: 67 L-------------GKLGKTPENLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHF 113
L G + T NL A GE +E EMYP F + A +G ++ R
Sbjct: 64 LEGGDLEIVAAFPAGIIADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFAS 123
Query: 114 ALEAEKIHAELYKKAKESAEQGKDI--EIKKVYICPVCGYTAIDE-APERCPVCGAPRDK 170
AE+ H + + + ++G+ E + C CGY APE CP C P+
Sbjct: 124 IAVAEEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGAPELCPACAHPKAH 183
Query: 171 F 171
F
Sbjct: 184 F 184
>sp|P51591|RUBY_CLOPE RUBRERYTHRIN >gi|1200049|emb|CAA63429.1| (X92844) rubrerythrin
[Clostridium perfringens]
Length = 195
Score = 73.0 bits (176), Expect = 2e-12
Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 20/189 (10%)
Query: 7 VKRAITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKN--HF 64
+K T + L ++FAGE A +Y F+ A +EG+ I+ +F A E HAK F
Sbjct: 4 LKGTKTAENLMKSFAGECQARTRYTYFSSTARKEGYVQISNIFLETAENEKEHAKRFYKF 63
Query: 65 IALGKLGKTPE---------------NLQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVR 109
+ G+ E NL+ EGE E+ +YP F A+ +G +
Sbjct: 64 LKDDLQGEAVEINAAYPVELPTDTLTNLKFAAEGEHDELSNLYPSFADVADEEGFPEVAA 123
Query: 110 TTHFALEAEKIHAELYKKAKESAEQGKDIEIKKVYI--CPVCGYT-AIDEAPERCPVCGA 166
+AE H + K ++ E+GK + +V + C CG+ EAP +CP C
Sbjct: 124 AFRMIAKAETAHYNRFMKLAKNMEEGKVFKKDEVVLWKCGNCGFIWEGAEAPLKCPACLH 183
Query: 167 PRDKFIVFE 175
P+ F VF+
Sbjct: 184 PQAFFEVFK 192
>gb|AAC28312.1| (AF050172) rubrerythrin/nigerythrin-like protein [Spirillum
volutans]
Length = 153
Score = 71.0 bits (171), Expect = 8e-12
Identities = 43/117 (36%), Positives = 60/117 (50%), Gaps = 2/117 (1%)
Query: 11 ITRKFLEEAFAGESMAHMKYLIFAEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKL 70
+T + E AF GES AH+KY FA+ ++G AK+F A E +HA H +
Sbjct: 1 VTFQNXEAAFGGESQAHIKYRYFAKICREQGDEATAKIFEETANQEVLHAFGHLDLIYPA 60
Query: 71 GK-TPEN-LQAGIEGETYEVEEMYPVFNKTAEFQGEKDAVRTTHFALEAEKIHAELY 125
+ TP L+ I GETYE +MYP F + AE + AV+ + K HAE +
Sbjct: 61 AEMTPARCLELAIAGETYEYTQMYPAFREAAESEQNHAAVQEIDEQIAESKEHAERF 117
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61325273
Number of Sequences: 2977
Number of extensions: 2376050
Number of successful extensions: 6718
Number of sequences better than 1.0e-10: 18
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6671
Number of HSP's gapped (non-prelim): 19
length of query: 175
length of database: 189,106,746
effective HSP length: 54
effective length of query: 121
effective length of database: 156,788,448
effective search space: 18971402208
effective search space used: 18971402208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)