BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0599 (PAB0599) DE:desulfoferrodoxin
(118 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75136 desulfoferrodoxin PAB0599 - Pyrococcus abyssi (strai... 256 9e-68
sp|O58810|NLRH_PYRHO NEELAREDOXIN HOMOLOG >gi|7518970|pir||H7110... 240 6e-63
pir||T44571 superoxide reductase (EC 1.-.-.-) [imported] - Pyroc... 179 1e-44
gi|11497956 desulfoferrodoxin, putative [Archaeoglobus fulgidus]... 140 5e-33
pir||G72348 neelaredoxin - Thermotoga maritima (strain MSB8) >gi... 114 3e-25
sp|O50258|NLR_DESGI NEELAREDOXIN >gi|2654185|gb|AAB87989.1| (AF0... 101 3e-21
>pir||F75136 desulfoferrodoxin PAB0599 - Pyrococcus abyssi (strain Orsay)
>gi|5458318|emb|CAB49807.1| (AJ248285) desulfoferrodoxin
[Pyrococcus abyssi]
Length = 118
Score = 256 bits (646), Expect = 9e-68
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MVGMLKDTIKSGDWKGEKHVPVIEYEKEGDLVKVEVSVGKEIPHPNTPEHHIAWIELYFH 60
MVGMLKDTIKSGDWKGEKHVPVIEYEKEGDLVKVEVSVGKEIPHPNTPEHHIAWIELYFH
Sbjct: 1 MVGMLKDTIKSGDWKGEKHVPVIEYEKEGDLVKVEVSVGKEIPHPNTPEHHIAWIELYFH 60
Query: 61 PEDGQFPILVGRVAFTSHDDPLTEPRAVFFFKTKKKGKLYALSYCNIHGLWENEVQLE 118
PEDGQFPILVGRVAFTSHDDPLTEPRAVFFFKTKKKGKLYALSYCNIHGLWENEVQLE
Sbjct: 61 PEDGQFPILVGRVAFTSHDDPLTEPRAVFFFKTKKKGKLYALSYCNIHGLWENEVQLE 118
>sp|O58810|NLRH_PYRHO NEELAREDOXIN HOMOLOG >gi|7518970|pir||H71102 hypothetical protein
PH1083 - Pyrococcus horikoshii
>gi|3257499|dbj|BAA30182.1| (AP000004) 137aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 137
Score = 240 bits (605), Expect = 6e-63
Identities = 108/118 (91%), Positives = 114/118 (96%)
Query: 1 MVGMLKDTIKSGDWKGEKHVPVIEYEKEGDLVKVEVSVGKEIPHPNTPEHHIAWIELYFH 60
++GMLK+TI+SGDWKGEKHVPVIEYE+EGDLVKVEVSVGKEIPHPNTPEHHIAWIELYFH
Sbjct: 20 VIGMLKETIRSGDWKGEKHVPVIEYEREGDLVKVEVSVGKEIPHPNTPEHHIAWIELYFH 79
Query: 61 PEDGQFPILVGRVAFTSHDDPLTEPRAVFFFKTKKKGKLYALSYCNIHGLWENEVQLE 118
PE GQFPILVGRV FT+H DPLTEPRAVFFFKT KKGKLYALSYCNIHGLWENEVQLE
Sbjct: 80 PEGGQFPILVGRVEFTNHSDPLTEPRAVFFFKTSKKGKLYALSYCNIHGLWENEVQLE 137
>pir||T44571 superoxide reductase (EC 1.-.-.-) [imported] - Pyrococcus furiosus
>gi|8569605|pdb|1DQI|A Chain A, Crystal Structure Of
Superoxide Reductase From P. Furiosus In The Oxidized
State At 1.7 Angstroms Resolution >gi|8569606|pdb|1DQI|B
Chain B, Crystal Structure Of Superoxide Reductase From
P. Furiosus In The Oxidized State At 1.7 Angstroms
Resolution >gi|8569607|pdb|1DQI|C Chain C, Crystal
Structure Of Superoxide Reductase From P. Furiosus In
The Oxidized State At 1.7 Angstroms Resolution
>gi|8569608|pdb|1DQI|D Chain D, Crystal Structure Of
Superoxide Reductase From P. Furiosus In The Oxidized
State At 1.7 Angstroms Resolution >gi|8569609|pdb|1DQK|A
Chain A, Crystal Structure Of Superoxide Reductase In
The Reduced State At 2.0 Angstroms Resolution
>gi|8569610|pdb|1DQK|B Chain B, Crystal Structure Of
Superoxide Reductase In The Reduced State At 2.0
Angstroms Resolution >gi|8569611|pdb|1DQK|C Chain C,
Crystal Structure Of Superoxide Reductase In The Reduced
State At 2.0 Angstroms Resolution >gi|8569612|pdb|1DQK|D
Chain D, Crystal Structure Of Superoxide Reductase In
The Reduced State At 2.0 Angstroms Resolution
>gi|7546408|pdb|1DO6|A Chain A, Crystal Structure Of
Superoxide Reductase In The Oxidized State At 2.0
Angstrom Resolution >gi|7546409|pdb|1DO6|B Chain B,
Crystal Structure Of Superoxide Reductase In The
Oxidized State At 2.0 Angstrom Resolution
>gi|6066244|gb|AAF03229.1|AF156097_9 (AF156097)
superoxide reductase [Pyrococcus furiosus]
Length = 124
Score = 179 bits (449), Expect = 1e-44
Identities = 87/124 (70%), Positives = 95/124 (76%), Gaps = 9/124 (7%)
Query: 4 MLKDTIKSGDWKGEKHVPVIEYEKEGDLVKVEVSVGKEIPHPNTPEHHIAWIELYFHPED 63
M+ +TI+SGDWKGEKHVPVIEYE+EG+LVKV+V VGKEIPHPNT EHHI +IELYF PE
Sbjct: 1 MISETIRSGDWKGEKHVPVIEYEREGELVKVKVQVGKEIPHPNTTEHHIRYIELYFLPEG 60
Query: 64 GQFPILVGRVAFTSH---------DDPLTEPRAVFFFKTKKKGKLYALSYCNIHGLWENE 114
F VGRV FT+H D TEP A F KTKKKGKLYALSYCNIHGLWENE
Sbjct: 61 ENFVYQVGRVEFTAHGESVNGPNTSDVYTEPIAYFVLKTKKKGKLYALSYCNIHGLWENE 120
Query: 115 VQLE 118
V LE
Sbjct: 121 VTLE 124
>gi|11497956 desulfoferrodoxin, putative [Archaeoglobus fulgidus]
>gi|3914137|sp|O29903|NLRH_ARCFU NEELAREDOXIN HOMOLOG
>gi|7433370|pir||H69292 desulfoferrodoxin homolog -
Archaeoglobus fulgidus >gi|2650292|gb|AAB90892.1|
(AE001081) desulfoferrodoxin, putative [Archaeoglobus
fulgidus]
Length = 125
Score = 140 bits (350), Expect = 5e-33
Identities = 71/121 (58%), Positives = 83/121 (67%), Gaps = 10/121 (8%)
Query: 7 DTIKSGDWKGEKHVPVIEYEK-EGDLVKVEVSVGKEIPHPNTPEHHIAWIELYFHPEDGQ 65
+ ++ DWK EKHVPVIE + EG +V+V+VSVGKEIPHPNT EHHIAWIEL F PE +
Sbjct: 2 ELFQTADWKKEKHVPVIEVLRAEGGVVEVKVSVGKEIPHPNTTEHHIAWIELVFQPEGSK 61
Query: 66 FPILVGRVAFTSH----DDP-----LTEPRAVFFFKTKKKGKLYALSYCNIHGLWENEVQ 116
FP +VGR F +H D P T+P AVF FK +K GKL A SYCNIHGLW E
Sbjct: 62 FPYVVGRAEFAAHGASVDGPNTSGVYTDPVAVFAFKAEKSGKLTAFSYCNIHGLWMGEAT 121
Query: 117 L 117
L
Sbjct: 122 L 122
>pir||G72348 neelaredoxin - Thermotoga maritima (strain MSB8)
>gi|4981181|gb|AAD35742.1|AE001739_5 (AE001739)
neelaredoxin [Thermotoga maritima]
Length = 131
Score = 114 bits (283), Expect = 3e-25
Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 12/125 (9%)
Query: 5 LKDTIKSGDWKGEKHVPVIEYE---KEGDLVKVEVSVGKEIPHPNTPEHHIAWIELYFHP 61
L D IK+ D+K EKHVPVIE K+ + V++ V+VGKEIPHPNT EHHI WI+++F P
Sbjct: 3 LSDFIKTEDFKKEKHVPVIEAPEKVKKDEKVQIVVTVGKEIPHPNTTEHHIRWIKVFFQP 62
Query: 62 EDGQFPILVGRVAFTSHDDPL---------TEPRAVFFFKTKKKGKLYALSYCNIHGLWE 112
+ + VGR F +H + + TEP K + G + ALSYCNIHGLWE
Sbjct: 63 DGDPYVYEVGRYEFNAHGESVQGPNIGAVYTEPTVTTVVKLNRSGTIIALSYCNIHGLWE 122
Query: 113 NEVQL 117
+ ++
Sbjct: 123 SSQKI 127
>sp|O50258|NLR_DESGI NEELAREDOXIN >gi|2654185|gb|AAB87989.1| (AF034965) neelaredoxin
[Desulfovibrio gigas] >gi|4235394|gb|AAD13200.1|
(AF096317) neelaredoxin [Desulfovibrio gigas]
Length = 130
Score = 101 bits (250), Expect = 3e-21
Identities = 54/119 (45%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Query: 7 DTIKSGDWKGEKHVPVIEYEKE---GDLVKVEVSVGKEIPHPNTPEHHIAWIELYFHPED 63
D ++ DWK EKHVP IE + V VS+GKEI HPNT EHHI WI YF PE
Sbjct: 5 DMFQTADWKTEKHVPAIECDDAVAADAFFPVTVSLGKEIAHPNTTEHHIRWIRCYFKPEG 64
Query: 64 GQFPILVGRVAFTSHDDPLTEPR---------AVFFFKTKKKGKLYALSYCNIHGLWEN 113
+F VG FT+H + P F K K G L A S+CNIHGLWE+
Sbjct: 65 DKFSYEVGSFEFTAHGECAKGPNEGPVYTNHTVTFQLKIKTPGVLVASSFCNIHGLWES 123
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.441
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52486978
Number of Sequences: 2977
Number of extensions: 2210110
Number of successful extensions: 4399
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4388
Number of HSP's gapped (non-prelim): 6
length of query: 118
length of database: 189,106,746
effective HSP length: 48
effective length of query: 70
effective length of database: 160,379,370
effective search space: 11226555900
effective search space used: 11226555900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)