BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0600 (PAB0600) DE:Hypothetical protein
(397 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75137 hypothetical protein PAB0600 - Pyrococcus abyssi (st... 812 0.0
pir||A71134 hypothetical protein PH0837 - Pyrococcus horikoshii ... 666 0.0
pir||A75105 hypothetical protein PAB1562 - Pyrococcus abyssi (st... 356 2e-97
pir||B75201 hypothetical protein PAB0083 - Pyrococcus abyssi (st... 301 1e-80
pir||B75067 hypothetical protein PAB1355 - Pyrococcus abyssi (st... 270 2e-71
gb|AAK41652.1| Conserved hypothetical protein [Sulfolobus solfat... 261 8e-69
pir||D71082 hypothetical protein PH0922 - Pyrococcus horikoshii ... 256 5e-67
pir||D72356 conserved hypothetical protein - Thermotoga maritima... 150 2e-35
gb|AAK41775.1| Conserved hypothetical protein [Sulfolobus solfat... 98 1e-19
gb|AAK41406.1| Conserved hypothetical protein [Sulfolobus solfat... 79 8e-14
pir||G64492 hypothetical protein MJ1544 - Methanococcus jannasch... 70 5e-11
>pir||A75137 hypothetical protein PAB0600 - Pyrococcus abyssi (strain Orsay)
>gi|5458321|emb|CAB49810.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 397
Score = 812 bits (2075), Expect = 0.0
Identities = 397/397 (100%), Positives = 397/397 (100%)
Query: 1 MRLGDIAYMNPWWEGKEDYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTG 60
MRLGDIAYMNPWWEGKEDYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTG
Sbjct: 1 MRLGDIAYMNPWWEGKEDYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTG 60
Query: 61 IKLLIQELLRNNPPEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTFL 120
IKLLIQELLRNNPPEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTFL
Sbjct: 61 IKLLIQELLRNNPPEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTFL 120
Query: 121 EGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYIE 180
EGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYIE
Sbjct: 121 EGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYIE 180
Query: 181 IMGIKKPELHREKVLKLFEDYLTTGGFPPSINGFPMEDLLGAYIGELVRFGKSLEIARET 240
IMGIKKPELHREKVLKLFEDYLTTGGFPPSINGFPMEDLLGAYIGELVRFGKSLEIARET
Sbjct: 181 IMGIKKPELHREKVLKLFEDYLTTGGFPPSINGFPMEDLLGAYIGELVRFGKSLEIARET 240
Query: 241 FAAIIRSSPSATSFRALAGMTSGYSYKVIQDYVEFFTELYILGIAYLKQGNQIMYRREKK 300
FAAIIRSSPSATSFRALAGMTSGYSYKVIQDYVEFFTELYILGIAYLKQGNQIMYRREKK
Sbjct: 241 FAAIIRSSPSATSFRALAGMTSGYSYKVIQDYVEFFTELYILGIAYLKQGNQIMYRREKK 300
Query: 301 FFFRDPLLAKLFAMWSGMELREDALYEWIVQEHVYRRFGEVYYYRNSYEVDVVAKNLRIE 360
FFFRDPLLAKLFAMWSGMELREDALYEWIVQEHVYRRFGEVYYYRNSYEVDVVAKNLRIE
Sbjct: 301 FFFRDPLLAKLFAMWSGMELREDALYEWIVQEHVYRRFGEVYYYRNSYEVDVVAKNLRIE 360
Query: 361 VKAGKAHRRYPRNVIVLEREDIPFFLLELLNERGFNI 397
VKAGKAHRRYPRNVIVLEREDIPFFLLELLNERGFNI
Sbjct: 361 VKAGKAHRRYPRNVIVLEREDIPFFLLELLNERGFNI 397
>pir||A71134 hypothetical protein PH0837 - Pyrococcus horikoshii
>gi|3257248|dbj|BAA29931.1| (AP000003) 396aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 396
Score = 666 bits (1701), Expect = 0.0
Identities = 303/392 (77%), Positives = 360/392 (91%)
Query: 1 MRLGDIAYMNPWWEGKEDYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTG 60
M+L DI YMNPWWEGKEDYHVK+W++QK+HW+P+W++E+SLKPFSLNFVLGPRQVGKTTG
Sbjct: 3 MKLDDITYMNPWWEGKEDYHVKQWEKQKVHWEPKWIREISLKPFSLNFVLGPRQVGKTTG 62
Query: 61 IKLLIQELLRNNPPEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTFL 120
IKLLIQ++L NPPE +LYLN+E+L +YRELL I+REFQELK EGIKTGYIFLDE + L
Sbjct: 63 IKLLIQKILEENPPESVLYLNLEILPTYRELLDIIREFQELKKEEGIKTGYIFLDEASSL 122
Query: 121 EGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYIE 180
EGWWRGVKPLID+GLLENDVIT+TGSSSL+V++DIELFPGRRG GKT+EVMPLSF EY
Sbjct: 123 EGWWRGVKPLIDSGLLENDVITVTGSSSLRVRRDIELFPGRRGGGKTLEVMPLSFPEYAR 182
Query: 181 IMGIKKPELHREKVLKLFEDYLTTGGFPPSINGFPMEDLLGAYIGELVRFGKSLEIARET 240
+MG+KK +L KV+KLFE Y+ TGGFP SINGFPMEDLLGAYIGE VRFGKSLEIA+E
Sbjct: 183 VMGLKKHKLEGSKVIKLFEKYIQTGGFPGSINGFPMEDLLGAYIGEFVRFGKSLEIAKEI 242
Query: 241 FAAIIRSSPSATSFRALAGMTSGYSYKVIQDYVEFFTELYILGIAYLKQGNQIMYRREKK 300
F+A+IRS+PSATSFRALA MTSGYSYKV+QDY+EFF +LYILG+AYLKQGNQ+MYRREKK
Sbjct: 243 FSALIRSAPSATSFRALAEMTSGYSYKVVQDYIEFFRDLYILGMAYLKQGNQVMYRREKK 302
Query: 301 FFFRDPLLAKLFAMWSGMELREDALYEWIVQEHVYRRFGEVYYYRNSYEVDVVAKNLRIE 360
FFFRDPLLAKLF++WSG E+ +DALYEWIVQEHV+R+FGE++Y+RNSYE+D++A +++IE
Sbjct: 303 FFFRDPLLAKLFSLWSGTEIGKDALYEWIVQEHVFRKFGEIHYFRNSYEIDIIASDMKIE 362
Query: 361 VKAGKAHRRYPRNVIVLEREDIPFFLLELLNE 392
VKAGKAHR+YPR V VLE+ED+PFFL+EL NE
Sbjct: 363 VKAGKAHRKYPRGVKVLEKEDVPFFLIELYNE 394
>pir||A75105 hypothetical protein PAB1562 - Pyrococcus abyssi (strain Orsay)
>gi|5458654|emb|CAB50142.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 405
Score = 356 bits (905), Expect = 2e-97
Identities = 181/392 (46%), Positives = 260/392 (66%), Gaps = 7/392 (1%)
Query: 1 MRLGDIAYMNPWWEGKEDYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTG 60
++L + NPWW + D + +++ +P+WL ELSL+PFSLNFV+GPR+VGKT G
Sbjct: 16 LKLHMLELQNPWWFSEPDRDWELFEKLTYKLRPKWLGELSLRPFSLNFVVGPRRVGKTLG 75
Query: 61 IKLLIQELLRN-NPPEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTF 119
IKLLI+ELL+ + P I Y + +VL YRELL IL ++ LK R+G+K+ +IFLDEV+
Sbjct: 76 IKLLIRELLKRVDTPYAIFYFSCDVLEDYRELLDILNDYLRLKKRKGVKSAFIFLDEVSL 135
Query: 120 LEGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYI 179
++ WWR +K LID G L+NDV+T+TGS SL + + E F GRRG GKT++VMPLSF EY
Sbjct: 136 VDDWWRALKFLIDRGELKNDVVTVTGSISLTIGQHFETFGGRRGKGKTVKVMPLSFHEY- 194
Query: 180 EIMGIKKPELHREKVLKLFEDYLTTGGFPPSING-FPMEDLLGAYIGELVRFGKSLEIAR 238
G+ E K +++FE YL TGG+ +NG +E+L+G +L +S ++AR
Sbjct: 195 --YGLFYDEFFLSKGVEVFESYLETGGYLAYLNGILKVEELVGLLKADLKALDRSTDLAR 252
Query: 239 ETFAAIIRSSPSATSFRALAGMTSGYSYKVIQDYVEFFTELYI-LGIAYLKQGNQIMYRR 297
+ AI+ +PS TSF A+A + G S ++DYVE F ++ L + YL +I R+
Sbjct: 253 DIMGAILDKAPSPTSFNAIAKVV-GVSPHTVRDYVELFEAFHVLLQVLYLGGDGKIYPRK 311
Query: 298 EKKFFFRDPLLAKLFAMWSGMELREDALYEWIVQEHVYRRFGEVYYYRNSYEVDVVAKNL 357
E+K RDPL+ + +W+ + LYEW+VQEH+YR+FGEV+YYRNSYEVD +A NL
Sbjct: 312 ERKLILRDPLIVRAMELWTRRRIDRAVLYEWLVQEHLYRKFGEVFYYRNSYEVDAIAGNL 371
Query: 358 RIEVKAGKAHRRYPRNVIVLEREDIPFFLLEL 389
++EVK+G+ RRYPR+V VL ++ FL +
Sbjct: 372 KVEVKSGEKRRRYPRDVRVLNGFEVLEFLYSI 403
>pir||B75201 hypothetical protein PAB0083 - Pyrococcus abyssi (strain Orsay)
>gi|5457566|emb|CAB49057.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 399
Score = 301 bits (762), Expect = 1e-80
Identities = 161/392 (41%), Positives = 241/392 (61%), Gaps = 14/392 (3%)
Query: 5 DIAYMNPWWEGKEDYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTGIKLL 64
D+ NPWW +ED ++ W + + P W++ELSL+PFS+NF++GPR+VGKT G+KLL
Sbjct: 2 DLEEYNPWWFHEEDPDIEEWNTLEYKYMPSWIRELSLEPFSVNFIIGPRRVGKTLGVKLL 61
Query: 65 IQELLRN---NPPEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTFLE 121
I++LL N NP E I Y + +L +LL +LR + +LK + IK+ IFLDEVT +
Sbjct: 62 IKQLLENRISNPYE-IFYYDCTMLDDQNDLLDVLRAYLKLKESKRIKSSLIFLDEVTSVR 120
Query: 122 GWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYIE- 180
WW+G+ LI+ L NDV+ I GS + + + I F GRRG+GK +E+MPL F +Y +
Sbjct: 121 NWWKGIIDLINRKKLRNDVVVIMGSVLINLDRSIGHFAGRRGNGKILEIMPLGFRDYYQL 180
Query: 181 IMGIKKPELHREKVLKLFEDYLTTGGFPPSIN-GFPMEDLLGAYIGEL--VRFGKSLEIA 237
I G++ E K + FE YL TGG+ +N D++G+ +L + K E A
Sbjct: 181 IFGVE--EYFERKGQEAFEMYLKTGGYAAYLNRRIRKSDIVGSLKADLRSLEREKDPETA 238
Query: 238 RETFAAIIRSSPSATSFRALAGMTSGYSYKVIQDYVEFFTELYI-LGIAYLKQGNQIMYR 296
RE AII +PS S+ LA G + ++ Y+ EL I L I + + G ++
Sbjct: 239 REILGAIISKAPSPVSYSELA-RDVGINRDTVRSYISVLVELKILLEIPFSEHGKMVLQN 297
Query: 297 REKKFFFRDPLLAKLFAMWSGMELREDALYEWIVQEHVYRRFGEVYYYRN-SYEVDVVAK 355
+ +K RDPL+A+ A W+ ++L + LYEW+VQEH+YR+F E+YY+ + +YE+D V
Sbjct: 298 KNRKIAIRDPLMARALAEWAKVKLEDSVLYEWVVQEHLYRKFREIYYFMSENYEIDAVVP 357
Query: 356 NLRIEVKAGKA-HRRYPRNVIVLEREDIPFFL 386
+R+EVK+GK+ RRYP +VI+L D+P FL
Sbjct: 358 GMRVEVKSGKSLGRRYPSDVIILTGRDVPRFL 389
>pir||B75067 hypothetical protein PAB1355 - Pyrococcus abyssi (strain Orsay)
>gi|5458944|emb|CAB50431.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 437
Score = 270 bits (683), Expect = 2e-71
Identities = 164/422 (38%), Positives = 240/422 (56%), Gaps = 49/422 (11%)
Query: 6 IAYMNPWWEGKE----DYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTGI 61
I NPWW+GKE D ++W+E + W PR ++++SL+PFSLNF+ GPRQVGKTT +
Sbjct: 2 IEQFNPWWKGKEFISEDEDYRKWEESGVKWVPRVIEDISLEPFSLNFIFGPRQVGKTTLL 61
Query: 62 KLLIQELLRNNP-PEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTFL 120
KL+I+ LL + P+ I YL + LS YREL+ L E+ EL+ EGI+ YIFLDE+TF
Sbjct: 62 KLIIKRLLDSGVNPKAIFYLRCDYLSDYRELMNALEEYMELREIEGIENSYIFLDEITFP 121
Query: 121 EGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYIE 180
W+R +K +D G +NDV+ +TGS S+ +K +IE FPGRRG GK I + PLSF +++
Sbjct: 122 REWFRAIKLYVDMGKFKNDVLILTGSVSMYLKGEIETFPGRRGKGKEIIMYPLSFRDFV- 180
Query: 181 IMGIKKPELHR---------------------EKVLKLFEDYLTTGGFPPSI-------- 211
G+ PEL+R +++ +LF YL +GGFP +I
Sbjct: 181 --GVVAPELYRKIPVVREISKVRECLKLLPWKDELHRLFLLYLRSGGFPRAIKDVLGKGR 238
Query: 212 -NGFPMEDLLGAYIGELVRFGKSLEIARETFAAIIRSSPSATSFRALAGMTSGYSYKVIQ 270
+G + L G++++FGKS E+AR I+ PS + +A S+K +
Sbjct: 239 VSGDTYDTYLSWVRGDIIKFGKSEEVARMIMKTILDKVPSPIGWNTIAREIDIGSHKTVF 298
Query: 271 DYVEFFTELYILGIAYLKQGNQIM--YRREKKFFFRDPLLAKLFAMWSGMEL-REDALYE 327
Y+EF + +IL + + N + +R+EKK DP L +LF+ W +E ED + E
Sbjct: 299 SYIEFLEKSFILKVLHYFDPNTLEPDFRKEKKVHLIDPFLYELFSRWCLVEKPSEDKIVE 358
Query: 328 WIVQEHVYRRFGEVYYYRNSYEVDVVAKN-LRIEVK-AGKAHRRYPR-----NVIVLERE 380
+V H+ R++ EV Y+RN EVDVV K+ + EVK GK R VI L ++
Sbjct: 359 SVVASHLARKY-EVGYWRNGKEVDVVTKSGIGFEVKWKGKVTPSRLRVGKIKEVITLSKD 417
Query: 381 DI 382
DI
Sbjct: 418 DI 419
>gb|AAK41652.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 409
Score = 261 bits (661), Expect = 8e-69
Identities = 142/356 (39%), Positives = 222/356 (61%), Gaps = 14/356 (3%)
Query: 10 NPWWEGK----EDYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTGIKLLI 65
N WW GK ED +K+W K W P+ + ++SL+PFSLNF++GPRQVGKTT IKLLI
Sbjct: 4 NIWWRGKDYIEEDEDIKKWNSAKFKWIPKEINKISLQPFSLNFIVGPRQVGKTTLIKLLI 63
Query: 66 QELLRNNP-PEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTFLEGWW 124
++LL +N P I Y + +++S Y ELL R++ +++ +EGIK+ +IFLDEVTF++ W+
Sbjct: 64 KKLLESNHNPLSIFYCSCDLVSDYEELLKRTRDYLKIRKQEGIKSSFIFLDEVTFVKEWY 123
Query: 125 RGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYIEIMGI 184
R VK LID G L +DV+T++GSSSL + K E FPGRRG+G + + PLSFS YI ++
Sbjct: 124 RAVKHLIDTGELTSDVVTVSGSSSLTILKQKESFPGRRGNGTDVILYPLSFSGYINVINP 183
Query: 185 K---KPELHREKVLKLFEDYLTTGGFPPSINGF-PMEDLLGAYIGELVRFGKSLEIARET 240
K +P + E + +LFE YL GG PPSING P++ I E+ R G+ +A++
Sbjct: 184 KIEVRPGWYSE-IEELFESYLKVGGLPPSINGLSPLKTYTEWIIYEINRVGRDEMLAKQI 242
Query: 241 FAAIIRSSPSATSFRALAGMTSGYSYKVIQDYVEFFTELYILGIAYLKQGN--QIMYRRE 298
+A++ ++PS S+ ++A G +++ + +Y++ F ++++ + N YR++
Sbjct: 243 LSAVLSTTPSKVSYNSIA-KEIGVNHRTVAEYIKLFNDMFLTLTLHFIDVNTGYYNYRKQ 301
Query: 299 KKFFFRDPLLAKLFAMWSGMELRED-ALYEWIVQEHVYRRFGEVYYYRNSYEVDVV 353
K F DPL + + W+G++ +D + E IV H+ R + Y E+DVV
Sbjct: 302 IKIHFVDPLFYDVMSTWTGVKRPDDPIIVEGIVASHLSRIYSIGYTEVGKEEIDVV 357
>pir||D71082 hypothetical protein PH0922 - Pyrococcus horikoshii
>gi|3257335|dbj|BAA30018.1| (AP000004) 435aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 435
Score = 256 bits (646), Expect = 5e-67
Identities = 148/396 (37%), Positives = 226/396 (56%), Gaps = 43/396 (10%)
Query: 6 IAYMNPWWEGKE----DYHVKRWKEQKLHWKPRWLKELSLKPFSLNFVLGPRQVGKTTGI 61
I + NPWW+G+E D ++W ++ W P +K++SL+PFSLN + GPRQVGKTT +
Sbjct: 2 IEHFNPWWKGREGIEEDEDYRKWIGSEVRWVPEVIKKISLEPFSLNIIFGPRQVGKTTLL 61
Query: 62 KLLIQELL-RNNPPEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEVTFL 120
KL++++LL P I YL + +S Y+EL+ ++ E+ E+K EGIK+ YI LDEVTF
Sbjct: 62 KLIVKKLLDEGKNPRSIFYLRCDYISDYKELMNVIDEYLEIKETEGIKSSYILLDEVTFP 121
Query: 121 EGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSEYIE 180
+ W+R +K ID G NDV+ +TGS+S+ K ++E FPGRRG GK ++PL+F E+I+
Sbjct: 122 KEWFRAIKLYIDMGKFRNDVLILTGSTSMYTKGEVETFPGRRGKGKDAVMLPLTFREFIK 181
Query: 181 IMGIKKPELHR---------------------EKVLKLFEDYLTTGGFPPSINGF----- 214
I P+LH E++ LF+ YL +GGFP ++
Sbjct: 182 ---IASPKLHSVLPRINSLNKVEECLKAIPFIEELNSLFKLYLISGGFPRAVKDLLKHNK 238
Query: 215 PMEDLLGAYI----GELVRFGKSLEIARETFAAIIRSSPSATSFRALAGMTSGYSYKVIQ 270
E+ YI G++++ GKS E+AR II+ PS S+ +A S+K +
Sbjct: 239 VSEETYETYISWMRGDILKLGKSEEVARRIMKTIIKKLPSPVSWHGIAKEIDIGSHKTVF 298
Query: 271 DYVEFFTELYILGI-AYLKQGN-QIMYRREKKFFFRDPLLAKLFAMWS-GMELREDALYE 327
Y+E F ++++ + Y+ + ++REKK DP L L + W+ E ED + E
Sbjct: 299 SYIELFERMFLIRVLPYIDPDKLEADFKREKKVHLIDPFLYHLVSRWTLTEEPSEDKIVE 358
Query: 328 WIVQEHVYRRFGEVYYYRNSYEVDVVAK-NLRIEVK 362
+V HV RR+ EV Y+R+ E+DVV + + IEVK
Sbjct: 359 SVVATHVARRY-EVGYWRDGREIDVVTREGVGIEVK 393
>pir||D72356 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981136|gb|AAD35701.1|AE001735_14 (AE001735)
conserved hypothetical protein [Thermotoga maritima]
Length = 463
Score = 150 bits (376), Expect = 2e-35
Identities = 103/369 (27%), Positives = 184/369 (48%), Gaps = 37/369 (10%)
Query: 3 LGDIAYMNPWWEGKE----DYHVKRWKEQKLHWKPRWL-KELSLKPFSLNFVLGPRQVGK 57
+ ++ MNPWW E D H+ ++ + P L K++ L + + GPRQVGK
Sbjct: 1 MDELYIMNPWWRDPEIINTDRHISMFENSTFKYFPENLFKKIPLNKPGIYTIRGPRQVGK 60
Query: 58 TTGIKLLIQELLRNN-PPEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDE 116
TT +KL I++LLR+ P I + + + EL+ ++ + ++ R+ +T Y+F+DE
Sbjct: 61 TTFLKLYIRKLLRDGVKPSNIFFFTCDAVKDRFELIETMKAYFQIFERKAGETRYLFIDE 120
Query: 117 VTFLEGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFS 176
+T +E W + +K L+D GLLEN ++ +TGSS+ +K+ E PGR+G+G+ + +PL+F
Sbjct: 121 ITAVEDWQKSIKYLVDIGLLENSLLILTGSSAFDLKRSSERLPGRKGYGEDLVYLPLTFG 180
Query: 177 EYIEIMGIKKPE-------LHREKVLKL-----------FEDYLTTGGFPPSINGFPMED 218
E++E +GI L E+ L++ F YL TGGFP I+ F E
Sbjct: 181 EFLESLGISVERMSVDDIFLKSEEELRILYLKNSFLKEYFVKYLNTGGFPKVIDVFLKEG 240
Query: 219 LL-----GAY----IGELVRFGKSLEIARETFAAIIRSSPSATSFRALAGMTSG--YSYK 267
+ G + +G+ ++ S E F + S+ +L + SG S
Sbjct: 241 KIDEITKGVFRDFILGDAEKYLGSRIKVIEIFKKLPDIVGQRFSWNSLVDIFSGAIESVD 300
Query: 268 VIQDYVEFFTELYILGIAYLKQGNQ--IMYRREKKFFFRDPLLAKLFAMWSGMELREDAL 325
IQ Y E+ +IL + ++ + +++KK + D ++ + SG +++ +
Sbjct: 301 TIQKYFEYLGYSFILMNVFFVDISRKTVRLKKQKKTYPIDRVVVDIIEEISGKQIKLPQI 360
Query: 326 YEWIVQEHV 334
E + H+
Sbjct: 361 VEMLTLRHL 369
>gb|AAK41775.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 287
Score = 98.3 bits (241), Expect = 1e-19
Identities = 83/280 (29%), Positives = 130/280 (45%), Gaps = 49/280 (17%)
Query: 3 LGDIAYMNPWWEGK----EDYHVKRWKEQKLHWKPRWLKELSLKPFSLN-FVLGPRQVGK 57
+ +++ NPWW K ED HVKR + + + P + +LGPRQVGK
Sbjct: 10 ISQMSFQNPWWVDKNRILEDEHVKRAR-------------VIVPPIDESALILGPRQVGK 56
Query: 58 TTGIKLLIQELLRNNPPEGILYLNVEVLSSYRELLTILREFQELKVREGIKTGYIFLDEV 117
TT +K I+ LL IL+ + + S EL+ ++ E++ L RE ++ YIFLDE+
Sbjct: 57 TTYLKTTIKTLLERVDSRSILFFSCDAFSKKEELIGLVNEYRTLVNRE--ESAYIFLDEI 114
Query: 118 TFLEGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGRRGHGKTIEVMPLSFSE 177
T + W + L +AG N ++ +TGSSS+ ++K E+ PGR K PL+F
Sbjct: 115 TSVSDWNTALLHLFNAGYFNNSLVYVTGSSSINLRK--EMLPGR--PIKKYVFYPLNFRV 170
Query: 178 YIE----------IMGIKKPELHREKVLKLFE----------DYLTTGG-FPPSINGFPM 216
Y + + +K EL+ E LKL +Y+ GG F S + P+
Sbjct: 171 YFDSFYKKLIQDHVKVDEKDELY-ENALKLLPYISELNKALLEYVRRGGFFATSFSENPL 229
Query: 217 ---EDLLGAYIGELVRFGKSLEIARETFAAIIRSSPSATS 253
E A + E ++ + + + II S S S
Sbjct: 230 SLYETYKDAILSEFLKTERKESVFKVIIRKIIESYGSRIS 269
>gb|AAK41406.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 432
Score = 79.2 bits (192), Expect = 8e-14
Identities = 85/333 (25%), Positives = 161/333 (47%), Gaps = 36/333 (10%)
Query: 49 VLGPRQVGKTTGIKLLIQELL--RNNPPEGILYLNVEV-----LSSYRELLTILREFQEL 101
V+G ++ GK+T I ++++L+ + P L +N E + + +L ++ ++EL
Sbjct: 44 VIGVKRSGKSTIINQVVKKLIEKKGEDPFDTLIVNFEDSRFGDIRTANDLFSLYELYKEL 103
Query: 102 KVREGIKTGYIFLDEVTFLEGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDIELFPGR 161
+ ++ YIFLDEV ++GW V+ ++D E +++ ++S+ K E+ GR
Sbjct: 104 RKKKKDSKPYIFLDEVQKIKGWEGFVRSIVDR--KEANIVISGSTASVNNKSVREVLAGR 161
Query: 162 RGHGKTIEVMPLSFSEYIEIMGIK-KPELH---REKVLK-LFEDYLTTGGFPPSINGFPM 216
+EV PLSF E++E I+ + EL +E +K LF +YL+ GGFP ++
Sbjct: 162 H---LILEVFPLSFKEFLEFKNIRLETELDMIAKESEIKVLFSEYLSYGGFPLVVSNERD 218
Query: 217 EDLLGAYIGELVRFG--------KSLEIARETFAAIIRSSPSATSFRALAGMTSGYSYKV 268
++ + + E + F ++ E A+ I + + FR ++ + ++
Sbjct: 219 KEKILLQLYEDIIFKDVISECNIRNEEEAKNLAIFYISNVGNKIRFRKIS-RSLNIPFRN 277
Query: 269 IQDYVEFFTELY-ILGIAYLKQGNQIMYRREKKFFFRDPLLAKLFAMWSGMELRED--AL 325
+Q Y E Y I + L M + +KK + D ++ + G L ++ +L
Sbjct: 278 VQRYTECMKNAYLIFFVKALSPKLSEMAKYDKKVYCIDNGISNVL----GYRLNQNIGSL 333
Query: 326 YEWIVQEHVYRRFG--EVYYYRNSY-EVDVVAK 355
+E ++ + RR+G V+YYR EVD V K
Sbjct: 334 FENLIFLELLRRYGINNVFYYRGRRGEVDFVVK 366
>pir||G64492 hypothetical protein MJ1544 - Methanococcus jannaschii
>gi|1592175|gb|AAB99562.1| (U67595) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 441
Score = 69.9 bits (168), Expect = 5e-11
Identities = 80/342 (23%), Positives = 156/342 (45%), Gaps = 49/342 (14%)
Query: 38 ELSLKPFSLNFVLGPRQVGKTTGIKLLIQELLRNNPPEGILYLNVEVLSSYRELLTILRE 97
E+ L P + + G R+ GKT + +++ + + +Y+N E R + L E
Sbjct: 44 EIKLIPNKIKVIYGVRRGGKT----YFLFQIINKHFKDDFIYINFE---DERLINIALDE 96
Query: 98 FQEL-KVREGIK-TGYIFLDEVTFLEGWWRGVKPLIDAGLLENDVITITGSSSLKVKKDI 155
EL K+ IK T +F DE+ ++ W + V+ L D+G I ITGSSS + K+I
Sbjct: 97 LNELLKIALSIKNTKNLFFDEIQSVDNWDKFVRRLNDSGFN----IFITGSSSKLLSKEI 152
Query: 156 ELFPGRRGHGKTIEVMPLSFSEYIEI--MGIKK--PELHREKVLKLFEDYLTTGGFPPSI 211
RG E++PL+F E+++ +KK + + ++LK +++ GGFP
Sbjct: 153 AT--SLRGRNLKTEILPLNFKEFLKFKNFNVKKRYSTIEKAELLKYLNEFIKFGGFPEIT 210
Query: 212 ---NGFPMEDLLGAYIGEL----------VRFGKSLEIARETFAAIIRSSPSATSFRALA 258
+ +++L Y+ + +R K +++ R +I + S + +A
Sbjct: 211 LIDDENIKKEILKEYLDGIFYRDVVERHSIRNIKEIKVLRN---ILINLFANEISIKKIA 267
Query: 259 GMTSGYSYKV----IQDYVEFFTELYILGIAYLKQGNQIMYRREKKFFFRDPLLAKLFAM 314
+ ++ K+ I +Y+E+F++ Y++ + N Y+ + + + ++ ++
Sbjct: 268 NLLKEFNTKISRECIYNYLEYFSDAYLIFLL-----NNFSYKTKTISYSKLYVIDGMWNF 322
Query: 315 WSGMELREDALYEWIVQEHVYRR-FGE----VYYYRNSYEVD 351
+ + E +V + RR F E Y R +YEVD
Sbjct: 323 SLSFSKNKGRILENLVFLELRRRGFVENENLFYVKRKNYEVD 364
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.143 0.430
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154002010
Number of Sequences: 2977
Number of extensions: 6714111
Number of successful extensions: 15579
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15535
Number of HSP's gapped (non-prelim): 11
length of query: 397
length of database: 189,106,746
effective HSP length: 52
effective length of query: 345
effective length of database: 157,985,422
effective search space: 54504970590
effective search space used: 54504970590
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)