BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0602 (PAB0602) DE:Hypothetical protein
         (272 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75137 hypothetical protein PAB0602 - Pyrococcus abyssi (st...   560  e-159
pir||G71229 hypothetical protein PH0097 - Pyrococcus horikoshii ...   142  5e-33

>pir||C75137 hypothetical protein PAB0602 - Pyrococcus abyssi (strain Orsay)
           >gi|5458323|emb|CAB49812.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 272
           
 Score =  560 bits (1428), Expect = e-159
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MRKVALLLLLALLIFSLHLFKPEAREERLRHFLESQYVPEAGLLRAAVKAYPDNETIYIA 60
           MRKVALLLLLALLIFSLHLFKPEAREERLRHFLESQYVPEAGLLRAAVKAYPDNETIYIA
Sbjct: 1   MRKVALLLLLALLIFSLHLFKPEAREERLRHFLESQYVPEAGLLRAAVKAYPDNETIYIA 60

Query: 61  NDNLLASKALEILNSPLAPRIREKLNEYSGGWNGKVDVLLGKPIEGFYCSKLLKIGSVYS 120
           NDNLLASKALEILNSPLAPRIREKLNEYSGGWNGKVDVLLGKPIEGFYCSKLLKIGSVYS
Sbjct: 61  NDNLLASKALEILNSPLAPRIREKLNEYSGGWNGKVDVLLGKPIEGFYCSKLLKIGSVYS 120

Query: 121 KKFKANFSIMWELTNKTCPMKDWMEYADLIAYAAINATLSGDIERAYKLYEGMLKLWDGH 180
           KKFKANFSIMWELTNKTCPMKDWMEYADLIAYAAINATLSGDIERAYKLYEGMLKLWDGH
Sbjct: 121 KKFKANFSIMWELTNKTCPMKDWMEYADLIAYAAINATLSGDIERAYKLYEGMLKLWDGH 180

Query: 181 GFRDKAFNGVYQTYKCALFIYVHRLLHKPKVGEEVYRKCSKIIIELQGEDGGIITGYKVK 240
           GFRDKAFNGVYQTYKCALFIYVHRLLHKPKVGEEVYRKCSKIIIELQGEDGGIITGYKVK
Sbjct: 181 GFRDKAFNGVYQTYKCALFIYVHRLLHKPKVGEEVYRKCSKIIIELQGEDGGIITGYKVK 240

Query: 241 DGKIIPWGDENTETTSIVVLAFYSPGFPIGNT 272
           DGKIIPWGDENTETTSIVVLAFYSPGFPIGNT
Sbjct: 241 DGKIIPWGDENTETTSIVVLAFYSPGFPIGNT 272


>pir||G71229 hypothetical protein PH0097 - Pyrococcus horikoshii
           >gi|3256483|dbj|BAA29166.1| (AP000001) 116aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 116
           
 Score =  142 bits (354), Expect = 5e-33
 Identities = 61/110 (55%), Positives = 81/110 (73%)

Query: 112 LLKIGSVYSKKFKANFSIMWELTNKTCPMKDWMEYADLIAYAAINATLSGDIERAYKLYE 171
           ++ I   YS+KFKA F+I++E+ + +CPMKDW EYADL  Y A+N  LSG    A++LY+
Sbjct: 1   MIFINKTYSRKFKAEFNIVYEIADTSCPMKDWKEYADLTVYMALNELLSGKKREAFELYK 60

Query: 172 GMLKLWDGHGFRDKAFNGVYQTYKCALFIYVHRLLHKPKVGEEVYRKCSK 221
            +L LWDG GFRDKAF GVYQTYKCALF Y++R L++P+ G  +Y  C K
Sbjct: 61  HLLSLWDGKGFRDKAFRGVYQTYKCALFAYLYRALNEPREGRNIYIVCQK 110


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.140    0.424 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107095743
Number of Sequences: 2977
Number of extensions: 4741525
Number of successful extensions: 9480
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9478
Number of HSP's gapped (non-prelim): 2
length of query: 272
length of database: 189,106,746
effective HSP length: 52
effective length of query: 220
effective length of database: 157,985,422
effective search space: 34756792840
effective search space used: 34756792840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)