BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0603 (PAB0603) DE:Hypothetical protein
         (135 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75137 hypothetical protein PAB0603 - Pyrococcus abyssi (st...   262  1e-69
pir||E71102 hypothetical protein PH1080 - Pyrococcus horikoshii ...   146  8e-35
pir||B72287 conserved hypothetical protein - Thermotoga maritima...    71  4e-12

>pir||E75137 hypothetical protein PAB0603 - Pyrococcus abyssi (strain Orsay)
           >gi|5458325|emb|CAB49814.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 135
           
 Score =  262 bits (663), Expect = 1e-69
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MDRKLYRAKDERMFLGVLGGIAKYLNVDATIIRLLFLLFLVLNPVAAIILYFGAAIIMPE 60
           MDRKLYRAKDERMFLGVLGGIAKYLNVDATIIRLLFLLFLVLNPVAAIILYFGAAIIMPE
Sbjct: 1   MDRKLYRAKDERMFLGVLGGIAKYLNVDATIIRLLFLLFLVLNPVAAIILYFGAAIIMPE 60

Query: 61  EPGEEEGEEELPKRIEKLRNEIEEGFKFENDAKVLGLALILLGLAFILKSYVFVPKEILM 120
           EPGEEEGEEELPKRIEKLRNEIEEGFKFENDAKVLGLALILLGLAFILKSYVFVPKEILM
Sbjct: 61  EPGEEEGEEELPKRIEKLRNEIEEGFKFENDAKVLGLALILLGLAFILKSYVFVPKEILM 120

Query: 121 GGILVVLGLYLIVRR 135
           GGILVVLGLYLIVRR
Sbjct: 121 GGILVVLGLYLIVRR 135


>pir||E71102 hypothetical protein PH1080 - Pyrococcus horikoshii
           >gi|3257496|dbj|BAA30179.1| (AP000004) 158aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 158
           
 Score =  146 bits (366), Expect = 8e-35
 Identities = 78/141 (55%), Positives = 104/141 (73%), Gaps = 9/141 (6%)

Query: 1   MDRKLYRAKDERMFLGVLGGIAKYLNVDATIIRLLFLLFLVLNPVAAIILYFGAAIIMPE 60
           M+++LYRA+DERMFLGVLGGIAKY +VD TI+RLLF+L  VLNP  A ILYFGAA++MPE
Sbjct: 19  MEKRLYRARDERMFLGVLGGIAKYFDVDPTIVRLLFILLFVLNPEVATILYFGAALVMPE 78

Query: 61  EPGEEEGEEELPKRIEKLRNEIEE---GFKFE-NDAKVLGLALILLGLAFILKSY---VF 113
           EPGEE G   +  R+E++  E+ E   G KF+  D KV+G+A+I LG   IL++Y   + 
Sbjct: 79  EPGEESG--SIGDRVEEMVREVGEVFKGLKFKGKDEKVIGIAVIALGFILILRAYYPFIN 136

Query: 114 VPKEILMGGILVVLGLYLIVR 134
           VP +I++G + V  G YLI+R
Sbjct: 137 VPWKIVVGVLAVTFGAYLILR 157


>pir||B72287 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981705|gb|AAD36232.1|AE001773_1 (AE001773)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 129
           
 Score = 71.4 bits (172), Expect = 4e-12
 Identities = 48/137 (35%), Positives = 83/137 (60%), Gaps = 18/137 (13%)

Query: 3   RKLYRAKDERMFLGVLGGIAKYLNVDATIIRLLFLLFLVLNPVAAIILYFGAAIIMPEEP 62
           ++L R++  R+  GV GG A+Y  VD T++RL+++L + L   A ++LY  A +IMPEE 
Sbjct: 4   KQLRRSRKNRIIAGVCGGFAEYFGVDPTLVRLIWVL-ITLAWGAGLLLYIIAWLIMPEEE 62

Query: 63  GEEEGEEELPKRIEKLRNEIEEGFKFENDAKVLGLALILLGLAFILKSY--VF--VPKEI 118
           GE E E+      + L+N   EG K      ++G  LI LG+ F++ ++  +F  V  ++
Sbjct: 63  GETESEK------KPLQN--TEGLKV-----LVGGLLIFLGIVFLVSAFFPIFFGVAWKV 109

Query: 119 LMGGILVVLGLYLIVRR 135
           ++  +LV+ G+ L++RR
Sbjct: 110 VLALLLVIFGVLLLLRR 126


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.151    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49626373
Number of Sequences: 2977
Number of extensions: 2066018
Number of successful extensions: 12814
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12807
Number of HSP's gapped (non-prelim): 3
length of query: 135
length of database: 189,106,746
effective HSP length: 51
effective length of query: 84
effective length of database: 158,583,909
effective search space: 13321048356
effective search space used: 13321048356
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)