BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0606 (PAB0606) DE:HOMOLOGY WITH METH2
(339 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75138 meth2 homolog PAB0606 - Pyrococcus abyssi (strain Or... 679 0.0
pir||H71103 hypothetical protein PH1091 - Pyrococcus horikoshii ... 484 e-136
pir||D72397 conserved hypothetical protein - Thermotoga maritima... 69 9e-11
>pir||A75138 meth2 homolog PAB0606 - Pyrococcus abyssi (strain Orsay)
>gi|5458329|emb|CAB49818.1| (AJ248285) HOMOLOGY WITH
METH2 [Pyrococcus abyssi]
Length = 339
Score = 679 bits (1732), Expect = 0.0
Identities = 339/339 (100%), Positives = 339/339 (100%)
Query: 1 MRILSCPKDLLNGPCGGALNGVCEVDGRPCPWVHFLERFDLLDGAPLLVEHPIVIEMERF 60
MRILSCPKDLLNGPCGGALNGVCEVDGRPCPWVHFLERFDLLDGAPLLVEHPIVIEMERF
Sbjct: 1 MRILSCPKDLLNGPCGGALNGVCEVDGRPCPWVHFLERFDLLDGAPLLVEHPIVIEMERF 60
Query: 61 ETEEVKLRESEFLRNLRKGKALSVEFPLKLFEKGRRDFENVNALYTIPDNPLGYPHLSST 120
ETEEVKLRESEFLRNLRKGKALSVEFPLKLFEKGRRDFENVNALYTIPDNPLGYPHLSST
Sbjct: 61 ETEEVKLRESEFLRNLRKGKALSVEFPLKLFEKGRRDFENVNALYTIPDNPLGYPHLSST 120
Query: 121 ALATWLKIKGFQVMPHVTGKDRNALAIISELRTALEFEFEGVLLTTGDWPGLLLQTKPVF 180
ALATWLKIKGFQVMPHVTGKDRNALAIISELRTALEFEFEGVLLTTGDWPGLLLQTKPVF
Sbjct: 121 ALATWLKIKGFQVMPHVTGKDRNALAIISELRTALEFEFEGVLLTTGDWPGLLLQTKPVF 180
Query: 181 DLDSPNMVKLAKLMFSGVLPTGERIELRERPFIAATMNPNYSAKVEGKRVARKLIAGADV 240
DLDSPNMVKLAKLMFSGVLPTGERIELRERPFIAATMNPNYSAKVEGKRVARKLIAGADV
Sbjct: 181 DLDSPNMVKLAKLMFSGVLPTGERIELRERPFIAATMNPNYSAKVEGKRVARKLIAGADV 240
Query: 241 LFTQVVASVEAVRRIPEILREALRYSSVEVPIVVSLLYPITKDLEGILRKMGVKTGSSFE 300
LFTQVVASVEAVRRIPEILREALRYSSVEVPIVVSLLYPITKDLEGILRKMGVKTGSSFE
Sbjct: 241 LFTQVVASVEAVRRIPEILREALRYSSVEVPIVVSLLYPITKDLEGILRKMGVKTGSSFE 300
Query: 301 EIVEEVSSLELGGINLIVFDENSWEKRLEEAFDIIKGGV 339
EIVEEVSSLELGGINLIVFDENSWEKRLEEAFDIIKGGV
Sbjct: 301 EIVEEVSSLELGGINLIVFDENSWEKRLEEAFDIIKGGV 339
>pir||H71103 hypothetical protein PH1091 - Pyrococcus horikoshii
>gi|3257507|dbj|BAA30190.1| (AP000004) 336aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 336
Score = 484 bits (1232), Expect = e-136
Identities = 229/337 (67%), Positives = 286/337 (83%), Gaps = 5/337 (1%)
Query: 1 MRILSCPKDLLNGPCGGALNGVCEVDGRPCPWVHFLERFDLLDGAPLLVEHPIVIEMERF 60
MRILSCPK LLNGPCG NG C V +PCPWV+ LE+ D LDGAPLLVEHPIV RF
Sbjct: 1 MRILSCPKKLLNGPCGDVFNGTCRVSKKPCPWVYVLEKLDTLDGAPLLVEHPIVA---RF 57
Query: 61 ETEE-VKLRESEFLRNLRKGKALSVEFPLKLFEKGRRDFENVNALYTIPDNPLGYPHLSS 119
E+ V++++S+F+++L KG+A+SVEFP+++FE G +DF++ L+T+PDNPLGYPH+SS
Sbjct: 58 TLEDDVEIKKSKFIKDLEKGRAISVEFPIRVFESGFKDFKDNGYLFTVPDNPLGYPHVSS 117
Query: 120 TALATWLKIKGFQVMPHVTGKDRNALAIISELRTALEFEFEGVLLTTGDWPGLLLQTKPV 179
ALATWLK KGF+VMPHVTGKDRNALAI SELRTA+EF FEGVLLTTGDWPGL+L KPV
Sbjct: 118 VALATWLKSKGFEVMPHVTGKDRNALAITSELRTAVEFNFEGVLLTTGDWPGLMLHAKPV 177
Query: 180 FDLDSPNMVKLAKLMFSGVLPTGERIELRERPFIAATMNPNYSAKVEGKRVARKLIAGAD 239
FDLDS NM+KLA+L+FSG+LPTGE+IE++ERPF+A TMNPNY K+EGKR+ARK+IAG D
Sbjct: 178 FDLDSTNMIKLARLVFSGILPTGEKIEVKERPFVAGTMNPNYQEKLEGKRLARKIIAGVD 237
Query: 240 VLFTQVVASVEAVRRIPEILREALRYSSVEVPIVVSLLYPITKDLEGILRKMGVKTGSSF 299
V+FTQVVA+V+ R+IPEI++ +L+YSS EVPIVVSLLYPI K+LE LR MGV+ GS F
Sbjct: 238 VVFTQVVANVKVARKIPEIVKHSLKYSSREVPIVVSLLYPIKKELENALRSMGVEVGSKF 297
Query: 300 EEIVEEVSSLELGGINLIVFDENSWEKRLEEAFDIIK 336
EE++EEVSSLE GINLIVF ++ W +++EEA +++K
Sbjct: 298 EEVLEEVSSLEFAGINLIVFADD-WMEKVEEALELVK 333
>pir||D72397 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980768|gb|AAD35359.1|AE001709_5 (AE001709)
conserved hypothetical protein [Thermotoga maritima]
Length = 281
Score = 68.7 bits (165), Expect = 9e-11
Identities = 52/166 (31%), Positives = 83/166 (49%), Gaps = 4/166 (2%)
Query: 105 YTIPDNPLGYPHLSSTALATWLKIKGFQVMPHVTGKDRNALAIISELRTALEFEFEGVLL 164
+T+ D P+G ++ A + L G V+ H T RN + I S+L + +LL
Sbjct: 41 FTVTDMPMGRVRMAPWAASHLLVESGKDVLMHFTRNTRNMIRIQSDLLGCHALGVKNLLL 100
Query: 165 TTGDWP--GLLLQTKPVFDLDSPNMVKLAKLMFSGVLPTGERIELRERPFIAATMNPNYS 222
+GD P G +T V D+D ++++L KLM G G +I + F+ +NP +S
Sbjct: 101 LSGDNPSHGDYPETTSVNDIDILDLIRLTKLMNEGTDLAGNKIYGKTDFFVGGALNP-FS 159
Query: 223 AKVEGKRVARKLIAGADVLFTQVVASVEAVRRIPEILREALRYSSV 268
K + KR +K+ AG D L TQ + + E ++I E L + S V
Sbjct: 160 DK-DIKRAKQKIEAGVDFLVTQPLFNSEVAKKIKEELNTKILASIV 204
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122934209
Number of Sequences: 2977
Number of extensions: 5029252
Number of successful extensions: 12367
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12363
Number of HSP's gapped (non-prelim): 3
length of query: 339
length of database: 189,106,746
effective HSP length: 55
effective length of query: 284
effective length of database: 156,189,961
effective search space: 44357948924
effective search space used: 44357948924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)