BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0614 (PAB0614) DE:Hypothetical protein
(298 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75139 hypothetical protein PAB0614 - Pyrococcus abyssi (st... 599 e-170
pir||G72414 hypothetical protein TM0119 - Thermotoga maritima (s... 277 1e-73
dbj|BAB03744.1| (AP001507) acetamidase [Bacillus halodurans] 234 1e-60
pir||C72750 probable acetamidase APE0528 - Aeropyrum pernix (str... 147 2e-34
gb|AAK42921.1| Hydrolase, acetamydase/formamidase related, putat... 146 3e-34
>pir||E75139 hypothetical protein PAB0614 - Pyrococcus abyssi (strain Orsay)
>gi|5458341|emb|CAB49830.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 298
Score = 599 bits (1527), Expect = e-170
Identities = 298/298 (100%), Positives = 298/298 (100%)
Query: 1 MNPMMVIPRDKHVYSFGPNMKEVARAKPGEIVIFQTLDALGGQVKSEEDTIEKIDFSRVN 60
MNPMMVIPRDKHVYSFGPNMKEVARAKPGEIVIFQTLDALGGQVKSEEDTIEKIDFSRVN
Sbjct: 1 MNPMMVIPRDKHVYSFGPNMKEVARAKPGEIVIFQTLDALGGQVKSEEDTIEKIDFSRVN 60
Query: 61 PATGPLYVEGAKRGGILRVDILDIKVEGKGAVVTAPGAGVLGKKVERPQTRICEVKDGFV 120
PATGPLYVEGAKRGGILRVDILDIKVEGKGAVVTAPGAGVLGKKVERPQTRICEVKDGFV
Sbjct: 61 PATGPLYVEGAKRGGILRVDILDIKVEGKGAVVTAPGAGVLGKKVERPQTRICEVKDGFV 120
Query: 121 IFKGIKIPAMPMIGVIGVAYDEEVPTGTPGKHGGNMDTNLIRKGTTIYFPVFVDGAYLAI 180
IFKGIKIPAMPMIGVIGVAYDEEVPTGTPGKHGGNMDTNLIRKGTTIYFPVFVDGAYLAI
Sbjct: 121 IFKGIKIPAMPMIGVIGVAYDEEVPTGTPGKHGGNMDTNLIRKGTTIYFPVFVDGAYLAI 180
Query: 181 GDLHAVMGDGEVCVSACEVSGEVTVRVTPMEGKLEWPLLETEDSFYLLVSDENLDKAIEE 240
GDLHAVMGDGEVCVSACEVSGEVTVRVTPMEGKLEWPLLETEDSFYLLVSDENLDKAIEE
Sbjct: 181 GDLHAVMGDGEVCVSACEVSGEVTVRVTPMEGKLEWPLLETEDSFYLLVSDENLDKAIEE 240
Query: 241 AVSLGVEALRKSNDLSWDEAYMLASLVMDVEISQLVDPRKTVRVRIPKGYVRLESFLT 298
AVSLGVEALRKSNDLSWDEAYMLASLVMDVEISQLVDPRKTVRVRIPKGYVRLESFLT
Sbjct: 241 AVSLGVEALRKSNDLSWDEAYMLASLVMDVEISQLVDPRKTVRVRIPKGYVRLESFLT 298
>pir||G72414 hypothetical protein TM0119 - Thermotoga maritima (strain MSB8)
>gi|4980611|gb|AAD35213.1|AE001698_2 (AE001698)
acetamidase, putative [Thermotoga maritima]
Length = 285
Score = 277 bits (700), Expect = 1e-73
Identities = 140/286 (48%), Positives = 196/286 (67%), Gaps = 8/286 (2%)
Query: 4 MMVIPRDKHVYSFGPNMKEVARAKPGEIVIFQTLDALGGQVKSEEDTIEKIDFSRVNPAT 63
M V+P + VYSF NM V PGE V+F+TLDALGG + +KIDFS+VNPAT
Sbjct: 1 MKVVPAQRCVYSFSANMAPVEEVYPGEQVVFETLDALGG-------SYDKIDFSKVNPAT 53
Query: 64 GPLYVEGAKRGGILRVDILDIKVEGKGAVVTAPGAGVLGKKVERPQTRICEVKDGFVIFK 123
GP++V G K G L+V I I++ +G +VT G GVLG +VE T+ E++ V+F
Sbjct: 54 GPVFVNGVKPGDTLKVRIKRIELPRRGMIVTGKGFGVLGDEVEGFHTKELEIEKWAVLFD 113
Query: 124 GIKIPAMPMIGVIGVAYDE-EVPTGTPGKHGGNMDTNLIRKGTTIYFPVFVDGAYLAIGD 182
G++IP PM+GVIGVA E E PTGT +HGGNMDT I + T++ PVF +GA LA+GD
Sbjct: 114 GVRIPIHPMVGVIGVAPQEGEYPTGTAHRHGGNMDTKEITENVTVHLPVFQEGALLALGD 173
Query: 183 LHAVMGDGEVCVSACEVSGEVTVRVTPMEGKLEWPLLETEDSFYLLVSDENLDKAIEEAV 242
+HA MGDGEVCVSACEV +V V + + +++WP++ET D++Y++VS ++++A++E
Sbjct: 174 VHATMGDGEVCVSACEVPAKVVVEIDVSKEEIKWPVVETNDAYYIIVSLPDIEEALKEVT 233
Query: 243 SLGVEALRKSNDLSWDEAYMLASLVMDVEISQLVDPRKTVRVRIPK 288
V +++ + + +AYMLASL +DV ISQLV+P KT + RIPK
Sbjct: 234 RETVWFIQRRKTIPFTDAYMLASLSVDVGISQLVNPAKTAKARIPK 279
>dbj|BAB03744.1| (AP001507) acetamidase [Bacillus halodurans]
Length = 300
Score = 234 bits (590), Expect = 1e-60
Identities = 124/290 (42%), Positives = 175/290 (59%), Gaps = 3/290 (1%)
Query: 4 MMVIPRDKHVYSFGPNMKEVARAKPGEIVIFQTLDALGGQVKSEEDTIEKIDFSRVNPAT 63
M+ + + ++ +A + G+ VIF+T D Q+ +EE + IDF+RVNPAT
Sbjct: 1 MIRLSNENTIFFMDKENVPIASCQSGDTVIFETKDCFSDQITNEEQALTSIDFNRVNPAT 60
Query: 64 GPLYVEGAKRGGILRVDILDIKVEGKGAVVTAPGAGVLGKKVERPQTRICEVKDGFVIFK 123
GPLYVEGA+RG +L ++ILDIKV +G + APG G LG+ + P T++ ++ V++
Sbjct: 61 GPLYVEGARRGDMLEIEILDIKVGKQGVMTAAPGLGALGESLNSPTTKLFPIEGDDVVYS 120
Query: 124 -GIKIPAMPMIGVIGVA-YDEEVPTGTPGKHGGNMDTNLIRKGTTIYFPVFVDGAYLAIG 181
G+++P PMIGVIG A E + GTPG HGGN+DT I+ GTT+Y PV VDGA LA+G
Sbjct: 121 TGLRLPLQPMIGVIGTAPPGEPINNGTPGPHGGNLDTKDIKPGTTVYLPVEVDGALLALG 180
Query: 182 DLHAVMGDGEVCVSACEVSGEVTVRV-TPMEGKLEWPLLETEDSFYLLVSDENLDKAIEE 240
DLHA MGDGE+ + E++G VT++V E P L+T+ F + S E LD A +
Sbjct: 181 DLHAAMGDGEILICGVEIAGTVTLKVNVKKERMFPLPALKTDTHFMTIASAETLDAAAVQ 240
Query: 241 AVSLGVEALRKSNDLSWDEAYMLASLVMDVEISQLVDPRKTVRVRIPKGY 290
A L LS +EA ML S D+ +SQ+V+P KT R + Y
Sbjct: 241 ATKNMATFLANRTALSIEEAGMLLSGAGDLYVSQIVNPLKTARFSLALHY 290
>pir||C72750 probable acetamidase APE0528 - Aeropyrum pernix (strain K1)
>gi|5104179|dbj|BAA79495.1| (AP000059) 377aa long
hypothetical acetamidase [Aeropyrum pernix]
Length = 377
Score = 147 bits (367), Expect = 2e-34
Identities = 104/337 (30%), Positives = 159/337 (46%), Gaps = 68/337 (20%)
Query: 18 PNMKEVARAKPGEIVIFQTLDALGGQVKSEE--DTIEKIDFSRVNPATGPLYVEGAKRGG 75
P+++ A PG+IV+ +T DAL GQ+ + D + D + V+P TGP+YV GAK G
Sbjct: 26 PDIEPAAEVDPGDIVVIETRDALDGQITANPGVDDVASADLNVVHPLTGPVYVRGAKPGD 85
Query: 76 ILRVDILDIKVEGKGAVVTAPGAGVLGKKVERPQTRICEVKDGFVI---FKGIKIPAMPM 132
+L V++LDIK E G V PG G L ++P ++ G+ ++IP P
Sbjct: 86 LLVVEVLDIKAEPFGFTVAIPGFGFLRDLFDKPYKIRWRIEGGYAFSEDLPNVRIPGDPF 145
Query: 133 IGVIGVAYDEEV----------------------PTGT----------------PGKHGG 154
+GV+GVA +E+ P G P ++GG
Sbjct: 146 LGVMGVAPSKELLKEIKEREDRLLKRGGFVLPPTPEGAVPPREPVASEGLRTIPPRENGG 205
Query: 155 NMDTNLIRKGTTIYFPVFVDGAYLAIGDLHAVMGDGEVCVSACEVSGEVTVRVTPM-EGK 213
N+D G+ IYFPVFV+GA ++GD H GDGEVC +A E+ T+R + EG
Sbjct: 206 NLDVRHFSPGSKIYFPVFVEGALFSVGDAHYAQGDGEVCGTAIEMGATATLRFGVISEGA 265
Query: 214 ----LEWPLLETEDS------------------FYLLVSDENLDKAIEEAVSLGVEALRK 251
+ +P+ + +S L EN + + A+ + L K
Sbjct: 266 KKYGIRFPIFKPSESSVRRFTHSKHVAVTGVGVIDSLNESENATLSAKHALLNLINLLEK 325
Query: 252 SNDLSWDEAYMLASLVMDVEISQLVD-PRKTVRVRIP 287
+ + ++AY+LAS+ D+ +SQLVD P TV +P
Sbjct: 326 AG-YTREQAYLLASVAADLRLSQLVDVPNFTVTAFLP 361
>gb|AAK42921.1| Hydrolase, acetamydase/formamidase related, putative [Sulfolobus
solfataricus]
Length = 318
Score = 146 bits (365), Expect = 3e-34
Identities = 102/285 (35%), Positives = 156/285 (53%), Gaps = 27/285 (9%)
Query: 29 GEIVIFQTLDALGGQV--KSEEDTIEKIDFSRVNPATGPLYVEGAKRGGILRVDILDIKV 86
G+I+ +T +A GQV S E + K+DFS+++P TGP+ V+GA+ G L V+ L+ +
Sbjct: 26 GDIITVETKEASDGQVTPSSTEKDLLKLDFSKIHPLTGPIEVKGAEPGDALEVEFLEFRH 85
Query: 87 EGKGAVVTAPGAGVLGKK-------VERPQTRICEVKDGFVIFK----GIKIPAMPMIGV 135
+G G PG G L + ++ P +I +V + + K +K+P P GV
Sbjct: 86 KGWGWTGVLPGFGFLADEQYTAPIDLQGPALKIWKVDEKYAYAKFGDLNVKVPIYPFPGV 145
Query: 136 IGVA--YDEEVPTGTPGKHGGNMDTNLIRKGTTIYFPVFVDGAYLAIGDLHAVMGDGEVC 193
IG + ++ T P ++GGNMD + GT +Y PVFV+GA L+IGD H GDGEVC
Sbjct: 146 IGTGLPFRGKLSTIPPRENGGNMDIKHLTVGTKLYLPVFVNGALLSIGDTHLAQGDGEVC 205
Query: 194 VSACEVSGEVTVRVTPMEG-KLEWPLL------ETEDSFYLLVS--DENLDKAIEEAVSL 244
+A E EVTV+V ++ L PL E E Y+ D NL A ++A+
Sbjct: 206 GTAIEAPMEVTVKVRLIKNVGLTQPLFVTKKVKEMEYDEYIAYPGIDSNLWNATKKAIKG 265
Query: 245 GVEALRKSNDLSWDEAYMLASLVMDVEISQLVD-PRKTVRVRIPK 288
+ L K ++ EAY+LAS+V+++ +S++VD P V +PK
Sbjct: 266 IISILSKY--MAPVEAYILASVVVNLRVSEVVDVPNWIVTAYLPK 308
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.402
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116343916
Number of Sequences: 2977
Number of extensions: 5220200
Number of successful extensions: 11105
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11090
Number of HSP's gapped (non-prelim): 6
length of query: 298
length of database: 189,106,746
effective HSP length: 55
effective length of query: 243
effective length of database: 156,189,961
effective search space: 37954160523
effective search space used: 37954160523
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)