BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0618 (PAB0618) DE:Hypothetical protein
         (168 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75140 hypothetical protein PAB0618 - Pyrococcus abyssi (st...   335  2e-91
pir||B71100 hypothetical protein PH1062 - Pyrococcus horikoshii ...   242  3e-63

>pir||D75140 hypothetical protein PAB0618 - Pyrococcus abyssi (strain Orsay)
           >gi|5458348|emb|CAB49837.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 168
           
 Score =  335 bits (849), Expect = 2e-91
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   MEEVRELKEVLDKVERKLIAGFHVYTALVYSAWLAAIGGYLLLTFLRFEYLGMYWLIAIA 60
           MEEVRELKEVLDKVERKLIAGFHVYTALVYSAWLAAIGGYLLLTFLRFEYLGMYWLIAIA
Sbjct: 1   MEEVRELKEVLDKVERKLIAGFHVYTALVYSAWLAAIGGYLLLTFLRFEYLGMYWLIAIA 60

Query: 61  LIIGLTIKVYTKYISSEHGEEKLGYAWIVGWILGGISWVLLGDARGLATMIVLGHVGMFV 120
           LIIGLTIKVYTKYISSEHGEEKLGYAWIVGWILGGISWVLLGDARGLATMIVLGHVGMFV
Sbjct: 61  LIIGLTIKVYTKYISSEHGEEKLGYAWIVGWILGGISWVLLGDARGLATMIVLGHVGMFV 120

Query: 121 SFRENSMLIPLALALVLLKPSWELADALIVLTYSLTALVNLYKAFRVI 168
           SFRENSMLIPLALALVLLKPSWELADALIVLTYSLTALVNLYKAFRVI
Sbjct: 121 SFRENSMLIPLALALVLLKPSWELADALIVLTYSLTALVNLYKAFRVI 168


>pir||B71100 hypothetical protein PH1062 - Pyrococcus horikoshii
           >gi|3257477|dbj|BAA30160.1| (AP000004) 168aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 168
           
 Score =  242 bits (610), Expect = 3e-63
 Identities = 112/168 (66%), Positives = 139/168 (82%)

Query: 1   MEEVRELKEVLDKVERKLIAGFHVYTALVYSAWLAAIGGYLLLTFLRFEYLGMYWLIAIA 60
           MEEVRELKEVLDKVE+KL+A F++YTAL+YSAWLA +GGYLL+  L  +Y+G YW+I I 
Sbjct: 1   MEEVRELKEVLDKVEKKLVAAFYIYTALIYSAWLATMGGYLLMMLLAPKYIGFYWIIGIT 60

Query: 61  LIIGLTIKVYTKYISSEHGEEKLGYAWIVGWILGGISWVLLGDARGLATMIVLGHVGMFV 120
           LII +T+KVY  Y+  E GE K+GYAW++GWI+GGI + +LGDARGLA+MIV+GH+GM+V
Sbjct: 61  LIILVTVKVYKTYLKGEAGEGKVGYAWLIGWIIGGILFGILGDARGLASMIVVGHIGMYV 120

Query: 121 SFRENSMLIPLALALVLLKPSWELADALIVLTYSLTALVNLYKAFRVI 168
           SFRE SMLIP+   +    PSWE A ALI+LTYSL AL+NLYKAFRVI
Sbjct: 121 SFREISMLIPVLAIVTFANPSWEFATALIILTYSLVALINLYKAFRVI 168


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.144    0.438 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61940416
Number of Sequences: 2977
Number of extensions: 2468365
Number of successful extensions: 9455
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9453
Number of HSP's gapped (non-prelim): 2
length of query: 168
length of database: 189,106,746
effective HSP length: 49
effective length of query: 119
effective length of database: 159,780,883
effective search space: 19013925077
effective search space used: 19013925077
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 162 (67.5 bits)