BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0619 (PAB0619) DE:Hypothetical protein
         (100 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75140 hypothetical protein PAB0619 - Pyrococcus abyssi (st...   196  5e-50
pir||A71100 hypothetical protein PH1061 - Pyrococcus horikoshii ...   155  1e-37

>pir||E75140 hypothetical protein PAB0619 - Pyrococcus abyssi (strain Orsay)
           >gi|5458349|emb|CAB49838.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 100
           
 Score =  196 bits (493), Expect = 5e-50
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MEELKQLMKSHILGNPVRLGIMVFLLSRRKATFSQIQKVLDLTPGNLKSHLNVLEKDKLI 60
           MEELKQLMKSHILGNPVRLGIMVFLLSRRKATFSQIQKVLDLTPGNLKSHLNVLEKDKLI
Sbjct: 1   MEELKQLMKSHILGNPVRLGIMVFLLSRRKATFSQIQKVLDLTPGNLKSHLNVLEKDKLI 60

Query: 61  KTYKVIADRPRTVVEITDKGIQETRKFLKMLKGIIDSIEF 100
           KTYKVIADRPRTVVEITDKGIQETRKFLKMLKGIIDSIEF
Sbjct: 61  KTYKVIADRPRTVVEITDKGIQETRKFLKMLKGIIDSIEF 100


>pir||A71100 hypothetical protein PH1061 - Pyrococcus horikoshii
          >gi|3257476|dbj|BAA30159.1| (AP000004) 100aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 100
          
 Score =  155 bits (388), Expect = 1e-37
 Identities = 74/99 (74%), Positives = 88/99 (88%)

Query: 1  MEELKQLMKSHILGNPVRLGIMVFLLSRRKATFSQIQKVLDLTPGNLKSHLNVLEKDKLI 60
          MEELK++MKSHILGNPVRLGIM+FLL RRKA FSQIQKVLDLTPGNL SH+ VLE++ L+
Sbjct: 1  MEELKEIMKSHILGNPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLV 60

Query: 61 KTYKVIADRPRTVVEITDKGIQETRKFLKMLKGIIDSIE 99
          KTYKVIADRPRTVVEITD G++E ++FL  LK +ID ++
Sbjct: 61 KTYKVIADRPRTVVEITDFGMEEAKRFLSSLKAVIDGLD 99


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.140    0.376 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31992072
Number of Sequences: 2977
Number of extensions: 1064015
Number of successful extensions: 3388
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3386
Number of HSP's gapped (non-prelim): 2
length of query: 100
length of database: 189,106,746
effective HSP length: 55
effective length of query: 45
effective length of database: 156,189,961
effective search space: 7028548245
effective search space used: 7028548245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 158 (66.0 bits)