BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0620 (PAB0620) DE:Hypothetical protein
(115 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P56813|Y620_PYRAB HYPOTHETICAL PROTEIN PAB0620 >gi|7517897|pi... 218 2e-56
sp|O58787|YA60_PYRHO HYPOTHETICAL PROTEIN PH1060 >gi|7518957|pir... 208 1e-53
sp|Q58103|Y691_METJA HYPOTHETICAL PROTEIN MJ0691 >gi|2128445|pir... 104 4e-22
gi|11499650 conserved hypothetical protein [Archaeoglobus fulgid... 97 6e-20
sp|O27652|YG15_METTH HYPOTHETICAL PROTEIN MTH1615 >gi|7482152|pi... 96 1e-19
gb|AAK40684.1| Apoptosis-related Tfar19 related protein (pdcd5) ... 91 3e-18
emb|CAC11200.1| (AL445063) apoptosis-related Tfar19 related prot... 78 2e-14
gb|AAG10611.1|AC008030_11 (AC008030) Similar to apoptosis relate... 73 7e-13
gi|4759224 programmed cell death 5; TFAR19 novel apoptosis-relat... 70 8e-12
gi|9790259 TF-1 apoptosis related protein 19 [Mus musculus] >gi|... 69 2e-11
pdb|1EIJ|A Chain A, Nmr Ensemble Of Methanobacterium Thermoautot... 69 2e-11
>sp|P56813|Y620_PYRAB HYPOTHETICAL PROTEIN PAB0620 >gi|7517897|pir||F75140 hypothetical
protein PAB0620 - Pyrococcus abyssi (strain Orsay)
>gi|5458350|emb|CAB49839.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 115
Score = 218 bits (549), Expect = 2e-56
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MREVAEDIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQAILRKILTPEARERL 60
MREVAEDIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQAILRKILTPEARERL
Sbjct: 1 MREVAEDIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQAILRKILTPEARERL 60
Query: 61 ARVRLVRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRIKW 115
ARVRLVRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRIKW
Sbjct: 61 ARVRLVRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRIKW 115
>sp|O58787|YA60_PYRHO HYPOTHETICAL PROTEIN PH1060 >gi|7518957|pir||H71099 hypothetical
protein PH1060 - Pyrococcus horikoshii
>gi|3257475|dbj|BAA30158.1| (AP000004) 115aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 115
Score = 208 bits (524), Expect = 1e-53
Identities = 108/115 (93%), Positives = 113/115 (97%)
Query: 1 MREVAEDIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQAILRKILTPEARERL 60
MRE+AEDIEEIRRRKL+ELQRKYLEQQKAQEE RQQALIEAQIQAILRKILTPEARERL
Sbjct: 1 MREMAEDIEEIRRRKLMELQRKYLEQQKAQEEAERQQALIEAQIQAILRKILTPEARERL 60
Query: 61 ARVRLVRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRIKW 115
ARV+LVRPELARQVELILVQLYQAGQITERIDDAKLK+ILAQIEA+TRREFRIKW
Sbjct: 61 ARVKLVRPELARQVELILVQLYQAGQITERIDDAKLKRILAQIEAKTRREFRIKW 115
>sp|Q58103|Y691_METJA HYPOTHETICAL PROTEIN MJ0691 >gi|2128445|pir||C64386 hypothetical
protein MJ0691 - Methanococcus jannaschii
>gi|1591406|gb|AAB98686.1| (U67516) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 109
Score = 104 bits (256), Expect = 4e-22
Identities = 58/110 (52%), Positives = 78/110 (70%), Gaps = 8/110 (7%)
Query: 7 DIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQ--AILRKILTPEARERLARVR 64
D+EEI+R+KLLELQ+K EQQ+ +E AL+EA++Q A+LRKILTPEARERL R+R
Sbjct: 2 DVEEIKRKKLLELQKKLAEQQQQEE------ALLEAEMQKRALLRKILTPEARERLERIR 55
Query: 65 LVRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRIK 114
L RPE A VE+ L+QL Q G++ + D K +L +I A T+R+ IK
Sbjct: 56 LARPEFAEAVEVQLIQLAQLGRLPIPLSDEDFKALLERISALTKRKREIK 105
>gi|11499650 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6226479|sp|O28211|YK68_ARCFU HYPOTHETICAL PROTEIN
AF2068 >gi|7483203|pir||C69508 conserved hypothetical
protein AF2068 - Archaeoglobus fulgidus
>gi|2648467|gb|AAB89187.1| (AE000961) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 111
Score = 96.7 bits (237), Expect = 6e-20
Identities = 56/108 (51%), Positives = 80/108 (73%), Gaps = 4/108 (3%)
Query: 6 EDIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQAILRKILTPEARERLARVRL 65
+D+EEIRRRKL+ELQR+ E ++ Q+EE R+Q +EAQ +AILR IL PEA+ERL+R++L
Sbjct: 5 DDLEEIRRRKLMELQRQK-ELEELQKEEMRRQ--VEAQKKAILRAILEPEAKERLSRLKL 61
Query: 66 VRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRI 113
PE+A VE L+ L QAG+I +I D L +IL +++ + +RE RI
Sbjct: 62 AHPEIAEAVENQLIYLAQAGRIQSKITDKMLVEILKRVQPK-KRETRI 108
>sp|O27652|YG15_METTH HYPOTHETICAL PROTEIN MTH1615 >gi|7482152|pir||G69082 conserved
hypothetical protein MTH1615 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622740|gb|AAB86088.1| (AE000920) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 111
Score = 95.6 bits (234), Expect = 1e-19
Identities = 53/109 (48%), Positives = 78/109 (70%), Gaps = 5/109 (4%)
Query: 7 DIEEIRRRKLLELQRKYLEQQKAQEEEARQQAL--IEAQIQAILRKILTPEARERLARVR 64
D+EEIRR+K+LELQ+K QQ+A E EA++Q +E Q + I+ +ILTPEAR RLA +R
Sbjct: 3 DLEEIRRKKMLELQQK--AQQQAMEAEAQEQMRQQLEMQKKQIMMQILTPEARSRLANLR 60
Query: 65 LVRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRI 113
L RP+ Q+EL L+QL Q G++ +I D +LK++L ++ A +RE +I
Sbjct: 61 LTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRV-AGKKREIKI 108
>gb|AAK40684.1| Apoptosis-related Tfar19 related protein (pdcd5) [Sulfolobus
solfataricus]
Length = 118
Score = 91.3 bits (223), Expect = 3e-18
Identities = 49/109 (44%), Positives = 76/109 (68%), Gaps = 7/109 (6%)
Query: 6 EDIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQAILRKILTPEARERLARVRL 65
E++EE+ L+RK ++QK EEE +++A +E+Q ++ILR ILTPEAR+RL ++L
Sbjct: 10 EELEEL-------LRRKAAQEQKRIEEERKRKAELESQKESILRVILTPEARQRLTNIKL 62
Query: 66 VRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRIK 114
V+PE A +E L+ L Q+G+I I D +LK+IL QI + RR+F+I+
Sbjct: 63 VKPEFAESLENQLIALAQSGRIKIPITDEELKQILEQISQQNRRDFKIQ 111
>emb|CAC11200.1| (AL445063) apoptosis-related Tfar19 related protein [Thermoplasma
acidophilum]
Length = 124
Score = 78.4 bits (190), Expect = 2e-14
Identities = 45/109 (41%), Positives = 73/109 (66%), Gaps = 2/109 (1%)
Query: 6 EDIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQAILRKILTPEARERLARVRL 65
E++E IRR++L +QR+ +++Q +E+E +++A A+ Q ILR+IL P ARERL VRL
Sbjct: 14 EELERIRRQQLESMQRQAMQEQMREEQEKQREAE-RARRQQILRQILDPSARERLNNVRL 72
Query: 66 VRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRIK 114
VRP+LA VE L+QL G+I + + + IL+++ +RE +I+
Sbjct: 73 VRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKL-TENKREPKIE 120
>gb|AAG10611.1|AC008030_11 (AC008030) Similar to apoptosis related protein 19 [Arabidopsis
thaliana]
Length = 129
Score = 73.4 bits (177), Expect = 7e-13
Identities = 40/116 (34%), Positives = 75/116 (64%), Gaps = 7/116 (6%)
Query: 7 DIEEIRRRKLLELQR-----KYLEQQKAQEEEARQQALIEA--QIQAILRKILTPEARER 59
++E IR+R++ EL K QQ ++E+ ++ A EA + Q +L ++L+ +ARER
Sbjct: 5 ELEAIRQRRMQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARER 64
Query: 60 LARVRLVRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRIKW 115
+AR+ LV+PE AR VE ++++ Q GQI E++ + +L +L QI ++T ++ ++ +
Sbjct: 65 IARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTY 120
>gi|4759224 programmed cell death 5; TFAR19 novel apoptosis-related gene [Homo
sapiens] >gi|11426015|ref|XP_009214.1| programmed cell
death 5 [Homo sapiens] >gi|6226219|sp|O14737|TF19_HUMAN
TFAR19 PROTEIN (TF-1 CELL APOPTOSIS RELATED GENE-19
PROTEIN) >gi|7513370|pir||JG0192 TFAR19 protein - human
>gi|2407068|gb|AAD11579.1| (AF014955) TFAR19 [Homo
sapiens]
Length = 125
Score = 69.9 bits (168), Expect = 8e-12
Identities = 37/111 (33%), Positives = 73/111 (65%), Gaps = 4/111 (3%)
Query: 6 EDIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQ-AILRKILTPEARERLARVR 64
E++E +RR++L ELQ K+ + A ++EA+ + EA+++ +IL ++L AR RL+ +
Sbjct: 4 EELEALRRQRLAELQAKHGDPGDAAQQEAKHR---EAEMRNSILAQVLDQSARARLSNLA 60
Query: 65 LVRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRIKW 115
LV+PE + VE L+Q+ + GQ++E++ + L +IL ++ +T + +K+
Sbjct: 61 LVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKF 111
>gi|9790259 TF-1 apoptosis related protein 19 [Mus musculus]
>gi|6686019|sp|P56812|TF19_MOUSE TFAR19 PROTEIN (TF-1
CELL APOPTOSIS RELATED GENE-19 PROTEIN)
>gi|5596626|gb|AAD45607.1|AF161074_1 (AF161074) TF-1
apoptosis related protein 19 [Mus musculus]
Length = 126
Score = 68.7 bits (165), Expect = 2e-11
Identities = 36/111 (32%), Positives = 74/111 (66%), Gaps = 4/111 (3%)
Query: 6 EDIEEIRRRKLLELQRKYLEQQKAQEEEARQQALIEAQIQ-AILRKILTPEARERLARVR 64
E++E +R+++L ELQ K+ + A ++EA+Q+ EA+++ +IL ++L AR RL+ +
Sbjct: 4 EELEALRKQRLAELQAKHGDPGDAAQQEAKQR---EAEMRNSILAQVLDQSARARLSNLA 60
Query: 65 LVRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRIKW 115
LV+PE + VE L+Q+ + GQ++ ++ + L +IL ++ +T ++ +K+
Sbjct: 61 LVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKF 111
>pdb|1EIJ|A Chain A, Nmr Ensemble Of Methanobacterium Thermoautotrophicum
Protein 1615
Length = 80
Score = 68.7 bits (165), Expect = 2e-11
Identities = 37/79 (46%), Positives = 55/79 (68%), Gaps = 3/79 (3%)
Query: 35 RQQALIEAQIQAILRKILTPEARERLARVRLVRPELARQVELILVQLYQAGQITERIDDA 94
RQQ +E Q + I+ +ILTPEAR RLA +RL RP+ Q+EL L+QL Q G++ +I D
Sbjct: 2 RQQ--LEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDE 59
Query: 95 KLKKILAQIEARTRREFRI 113
+LK++L ++ A +RE +I
Sbjct: 60 QLKELLKRV-AGKKREIKI 77
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.136 0.348
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30901171
Number of Sequences: 2977
Number of extensions: 991903
Number of successful extensions: 13234
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13218
Number of HSP's gapped (non-prelim): 11
length of query: 115
length of database: 189,106,746
effective HSP length: 60
effective length of query: 55
effective length of database: 153,197,526
effective search space: 8425863930
effective search space used: 8425863930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 159 (66.3 bits)